Ecosyste.ms: Papers

10.7554/eLife.57117

PRDM9 activity depends on HELLS and promotes local 5-hydroxymethylcytosine enrichment
Cited by: 15
Author(s): Yukiko Imai, Mathilde Biot, Julie Clément, Mariko Teragaki, Serge Urbach, Thomas Robert, Frédéric Baudat, Corinne Grey, Bernard de Massy
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0179882

HIV-Tat regulates macrophage gene expression in the context of neuroAIDS
Cited by: 22
Author(s): Loreto Carvallo, Lillie Lopez, J. Eduardo Fajardo, Matias Jaureguiberry‐Bravo, András Fiser, Joan W. Berman
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0099603

Genome-Wide Binding of MBD2 Reveals Strong Preference for Highly Methylated Loci
Cited by: 46
Author(s): Roberta Menafra, Arie B. Brinkman, Filomena Matarese, Gianluigi Franci, Stefanie J. J. Bartels, Luan N. Nguyen, Takashi Shimbo, Paul A. Wade, Nina C. Hubner, Hendrik G. Stunnenberg
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0009878

A Systems Biology Approach to Transcription Factor Binding Site Prediction
Cited by: 11
Author(s): Xiang Zhou, Pavel Sumazin, Presha Rajbhandari, Andrea Califano
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0027770

Global Mapping of H3K4me1 and H3K4me3 Reveals the Chromatin State-Based Cell Type-Specific Gene Regulation in Human Treg Cells
Cited by: 36
Author(s): Yi Tian, Zhengcai Jia, Jun Wang, Zhenglan Huang, Jun Tang, Yanhua Zheng, Yan Tang, Qinghong Wang, Zhiqiang Tian, Di Yang, Yi Zhang, Xiaolan Fu, Jianxun Song, Shunli Liu, Jennifer C. van Velkinburgh, Yuzhang Wu, Bing Ni
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0095374

A Comparison of the Rest Complex Binding Patterns in Embryonic Stem Cells and Epiblast Stem Cells
Cited by: 15
Author(s): Masahide Seki, Masaki Hara, Takako Arauchi, Hiromitsu Nakauchi, Sumio Sugano, Yutaka Suzuki
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0192105

Integrative analysis of super enhancer SNPs for type 2 diabetes
Cited by: 13
Author(s): Wei-ping Sun, Sihong Yao, Jie-long Tang, Shuai Liu, Juan Chen, Daqing Deng, Chun‐Ping Zeng
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.67964

Comparison of transcriptional initiation by RNA polymerase II across eukaryotic species
Cited by: 9
Author(s): Natalia Petrenko, Kevin Struhl
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0156378

An H2A Histone Isotype, H2ac, Associates with Telomere and Maintains Telomere Integrity
Cited by: 2
Author(s): Chia-Hsin Su, Ching Wei Cheng, Tsai-Yu Tzeng, I‐Hsuan Lin, Ming Hsu
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0025260

Comparison of Four ChIP-Seq Analytical Algorithms Using Rice Endosperm H3K27 Trimethylation Profiling Data
Cited by: 55
Author(s): Brandon Malone, Feng Tan, Susan M. Bridges, Zhaohua Peng
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0075126

Selection of Single Domain Antibodies from Immune Libraries Displayed on the Surface of E. coli Cells with Two β-Domains of Opposite Topologies
Cited by: 77
Author(s): Valencio Salema, Elvira Marín, Rocío Martínez-Arteaga, David Ruano-Gallego, Sofı́a Fraile, Yago Margolles, Xema Teira, Carlos Gutiérrez, Gustavo Bodelón, Luis A. Fernández
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pcbi.1000566

Discovery and Annotation of Functional Chromatin Signatures in the Human Genome
Cited by: 155
Author(s): Gary C. Hon, Wei Wang, Bing Ren
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0083258

Histone H4R3 Methylation Catalyzed by SKB1/PRMT5 Is Required for Maintaining Shoot Apical Meristem
Cited by: 18
Author(s): Minghui Yue, Qiuling Li, Zhang Ya, Yan Zhao, Zhaoliang Zhang, Shilai Bao
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0102238

Non-Circadian Expression Masking Clock-Driven Weak Transcription Rhythms in U2OS Cells
Cited by: 19
Author(s): Júlia Hoffmann, Laura Symul, Anton Shostak, Tamás Fischer, Félix Naef, Michael Brunner
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0137820

Fission Yeast CSL Transcription Factors: Mapping Their Target Genes and Biological Roles
Cited by: 18
Author(s): Martin Převorovský, Martina Oravcová, Jarmila Tvarůžková, Róbert Zach, Petr Folk, František Půta, Jürg Bähler
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0186974

Parallel mapping with site-directed hydroxyl radicals and micrococcal nuclease reveals structural features of positioned nucleosomes in vivo
Cited by: 5
Author(s): Tomohiro Fuse, Koji Katsumata, Koya Morohoshi, Yoshihiko Mukai, Yuichi Ichikawa, Hitoshi Kurumizaka, Akio Yanagida, Takeshi Urano, Hiroaki Kato, Mitsuhiro Shimizu
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0113361

Identification of Highly Conserved Putative Developmental Enhancers Bound by SOX3 in Neural Progenitors Using ChIP-Seq
Cited by: 27
Author(s): Dale McAninch, Paul Q. Thomas
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0044099

Transposable Elements in TDP-43-Mediated Neurodegenerative Disorders
Cited by: 146
Author(s): Wanhe Li, Ying Jin, Lisa Prazak, Molly Gale Hammell, Josh Dubnau
Software Mentions: 1
Published: about 12 years ago

10.1186/s12896-018-0416-3

Agrobacterium-mediated and electroporation-mediated transformation of Chlamydomonas reinhardtii: a comparative study
Cited by: 24
Author(s): Paola Mini, Olivia Costantina Demurtas, Silvia Valentini, Patrizia Pallara, Giuseppe Aprea, Paola Ferrante, Giovanni Giuliano
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0018430

A ChIP-Seq Benchmark Shows That Sequence Conservation Mainly Improves Detection of Strong Transcription Factor Binding Sites
Cited by: 12
Author(s): Tony Håndstad, Morten Rye, Finn Drabløs, Pål Sætrom
Software Mentions: 1
Published: over 13 years ago

10.7554/eLife.05606

The zinc finger proteins ZNF644 and WIZ regulate the G9a/GLP complex for gene repression
Cited by: 35
Author(s): Chunjing Bian, Qiang Chen, Xiaochun Yu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0122518

ChIP-Seq and RNA-Seq Analyses Identify Components of the Wnt and Fgf Signaling Pathways as Prep1 Target Genes in Mouse Embryonic Stem Cells
Cited by: 20
Author(s): Audrey Laurent, Manuela Calabrese, Hans-Jörg Warnatz, Marie–Laure Yaspo, В. А. Ткачук, Miguel Torres, Francesco Blasi, Dmitry Penkov
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0092317

Integrative ChIP-seq/Microarray Analysis Identifies a CTNNB1 Target Signature Enriched in Intestinal Stem Cells and Colon Cancer
Cited by: 42
Author(s): Kazuhide Watanabe, Jacob Biesinger, Michael L. Salmans, Brian S. Roberts, William T. Arthur, Michele A. Cleary, Bogi Andersen, Xiaohui Xie, Xing Dai
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0159779

Mapping Variation in Cellular and Transcriptional Response to 1,25-Dihydroxyvitamin D3 in Peripheral Blood Mononuclear Cells
Cited by: 17
Author(s): Silvia N. Kariuki, Joseph C. Maranville, Shaneen S. Baxter, Choongwon Jeong, Shigeki Nakagome, Cara L. Hrusch, David B. Witonsky, Anne I. Sperling, Anna Di Rienzo
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0125036

Buoyancy-Activated Cell Sorting Using Targeted Biotinylated Albumin Microbubbles
Cited by: 14
Author(s): Yu-Ren Liou, Yu-Hsin Wang, Chia‐Ying Lee, Pai‐Chi Li
Software Mentions: 1
Published: over 9 years ago

10.1186/1741-7007-8-128

Direct targets of Klf5 transcription factor contribute to the maintenance of mouse embryonic stem cell undifferentiated state
Cited by: 46
Author(s): Silvia Parisi, Luca Cozzuto, Carolina Tarantino, Fabiana Passaro, Simona Ciriello, Luigi Aloia, Dario Antonini, Vincenzo De Simone, Lucio Pastore, Tommaso Russo
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0062522

Estrogen-Dependent Dynamic Profile of eNOS-DNA Associations in Prostate Cancer
Cited by: 21
Author(s): Simona Nanni, Aurora Aiello, Agnese Re, Alessandro Guffanti, Valentina Benvenuti, Claudia Colussi, Luis Jaime Castro-Vega, Armando Felsani, Arturo Londoño-Vallejo, Maurizio C. Capogrossi, Silvia Bacchetti, Carlo Gaetano, Alfredo Pontecorvi, Antonella Farsetti
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.19214

Myogenic regulatory transcription factors regulate growth in rhabdomyosarcoma
Cited by: 51
Author(s): Inês M. Tenente, Madeline Hayes, Myron S. Ignatius, Karin M. McCarthy, Marielle E. Yohe, Sivasish Sindiri, Berkley E. Gryder, Mariana L. Oliveira, Ashwin Ramakrishnan, Qin Tang, Eleanor Chen, G. Petur Nielsen, Javed Khan, David M. Langenau
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0042414

Correlation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 Cells
Cited by: 31
Author(s): Yamei Wang, Ping Zhou, Liyong Wang, Zhenhua Li, Yao-Nan Zhang, Yuxiang Zhang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1003100

Integrative Analysis of Deep Sequencing Data Identifies Estrogen Receptor Early Response Genes and Links ATAD3B to Poor Survival in Breast Cancer
Cited by: 10
Author(s): Kristian Ovaska, Filomena Matarese, Korbinian Grote, Iryna Charapitsa, Alejandra Cervera, Chengyu Liu, George Reid, Martin Seifert, Hendrik G. Stunnenberg, Sampsa Hautaniemi
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0071690

An In-Depth Characterization of the Major Psoriasis Susceptibility Locus Identifies Candidate Susceptibility Alleles within an HLA-C Enhancer Element
Cited by: 36
Author(s): Alex Clop, Anna Bertoni, Sarah L. Spain, Michael A. Simpson, Venu Pullabhatla, Raúl Tonda, Christian Hundhausen, Paola Di Meglio, Pieter J. de Jong, Adrian Hayday, Frank O. Nestle, Jonathan Barker, Robert J.A. Bell, Francesca Capon, Richard C. Trembath
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0213374

Reduced variability of neural progenitor cells and improved purity of neuronal cultures using magnetic activated cell sorting
Cited by: 33
Author(s): Kathryn R. Bowles, T C W Julia, Qian Lü, Benjamin M Jadow, Alison M. Goate
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0017728

Effects of Nickel Treatment on H3K4 Trimethylation and Gene Expression
Cited by: 37
Author(s): Kam-Meng Tchou-Wong, Kathrin Kiok, Zuojian Tang, Thomas Kluz, Adriana Arita, PR Smith, Stuart M. Brown, Max Costa
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0096545

The Histone Lysine Demethylase JMJD3/KDM6B Is Recruited to p53 Bound Promoters and Enhancer Elements in a p53 Dependent Manner
Cited by: 63
Author(s): Kristine Williams, Jesper Christensen, Juri Rappsilber, Anders L. Nielsen, Jens Vilstrup Johansen, Kristian Helin
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0133280

c-Myb Binding Sites in Haematopoietic Chromatin Landscapes
Cited by: 21
Author(s): Mads Bengtsen, Kjetil Klepper, Sveinung Gundersen, Ignacio Cuervo, Finn Drabløs, Eivind Hovig, Geir Kjetil Sandve, Odd S. Gabrielsen, Ragnhild Eskeland
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0134119

Genome-Wide Mapping of 5mC and 5hmC Identified Differentially Modified Genomic Regions in Late-Onset Severe Preeclampsia: A Pilot Study
Cited by: 20
Author(s): Lisha Zhu, Ruitu Lv, Lingchun Kong, Haidong Cheng, Fei Lan, Xiaotian Li
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0190299

Genome-wide analysis of day/night DNA methylation differences in Populus nigra
Cited by: 19
Author(s): Changjun Ding, Lisong Liang, Shu Diao, Xiaohua Su, Bingyu Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0246124

Magnetic microparticle concentration and collection using a mechatronic magnetic ratcheting system
Cited by: 1
Author(s): Oladunni Adeyiga, Craig Murray, Hector E. Muñoz, Alberto Ranier Escobar, Dino Di Carlo
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pbio.3001360

A novel cascade allows Metarhizium robertsii to distinguish cuticle and hemocoel microenvironments during infection of insects
Cited by: 15
Author(s): Xing Zhang, Yamin Meng, Yizhou Huang, Dan Zhang, Weiguo Fang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0053270

Epigenetic Modifications Unlock the Milk Protein Gene Loci during Mouse Mammary Gland Development and Differentiation
Cited by: 51
Author(s): Monique Rijnkels, Courtneay Freeman-Zadrowski, Joseph Hernandez, Vani Potluri, Liguo Wang, Wei Li, Danielle G. Lemay
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0160358

Variation of DNA Methylome of Zebrafish Cells under Cold Pressure
Cited by: 28
Author(s): Bingshe Han, Wenhao Li, Zuozhou Chen, Qi Xu, Juntao Luo, Yonghai Shi, Xiaoxia Li, Xiaonan Yan, Junfang Zhang
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers11101539

PARP1 Co-Regulates EP300–BRG1-Dependent Transcription of Genes Involved in Breast Cancer Cell Proliferation and DNA Repair
Cited by: 22
Author(s): Maciej Sobczak, Andrew R. Pitt, Corinne M. Spickett, Agnieszka Robaszkiewicz
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.1001046

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
Cited by: 1,273
Author(s): R Myers, J Stamatoyannopoulos, M Snyder, Ian Dunham, Ross C. Hardison, B Bernstein, T Gingeras, W. James Kent, Ewan Birney, B Wold, Gregory E. Crawford, Charles B. Epstein, Noam Shoresh, Jason Ernst, Tarjei S. Mikkelsen, Pouya Kheradpour, Xiaolan Zhang, Li Wang, Robbyn Issner, Michael J. Coyne, Timothy Durham, Manching Ku, Thanh Truong, Lucas D. Ward, Robert C. Altshuler, Michael Lin, M Kellis, Carrie A. Davis, Philipp Kapranov, Alexander Dobin, Christopher Zaleski, Felix Schlesinger, Philippe Batut, Sudipto K. Chakrabortty, Sonali Jha, Wei Lin, Jörg Drenkow, Huaien Wang, Kim Bell, Ian Bell, Hui Gao, Erica Dumais, Jacqueline Dumais, Stylianos E. Antonarakis, Catherine Ucla, Christelle Borel, Roderic Guigó, Sarah Djebali, Julien Lagarde, Colin Kingswood, Paolo Ribeca, Michael Sammeth, Tyler Alioto, Angelika Merkel, Hagen Tilgner, Piero Carninci, Yoshihide Hayashizaki, Timo Lassmann, Hazuki Takahashi, Rehab F. Abdelhamid, Gregory J. Hannon, Katalin Toth Fejes, Jonathan Preall, Assaf Gordon, Vihra N. Sotirova, Alexandre Reymond, Cédric Howald, Emilie Aït Yahya Graison, Jacqueline Chrast, Yijun Ruan, Xiaoan Ruan, Atif Shahab, Wan Ting Poh, Chia Lin Wei, Terrence S. Furey, Alan P. Boyle, Nathan C. Sheffield, Lingyun Song, Yoichiro Shibata, Teresa R. Vales, Deborah R. Winter, Zhancheng Zhang, Darin London, Tianyuan Wang, Damian Keefe, Vishwanath R. Iyer, Bum Kyu Lee, Ryan M. McDaniell, Zheng Liu, Anna M. Battenhouse, Akshay Bhinge, Jason D. Lieb, Linda L. Grasfeder, Kimberly A. Showers, Paul G. Giresi, Seul K.C. Kim, Christopher Shestak, Florencia Pauli, Timothy E. Reddy, Jason Gertz, E. Christopher Partridge, Preti Jain, Rebekka O. Sprouse, Anita Bansal, Barbara N. Pusey, Michael A. Muratet, Katherine E. Varley, Kevin M. Bowling, Kimberly M. Newberry, Amy S. Nesmith, Jason A. Dilocker, Stephanie L. Parker, Lindsay L. Waite, Krista S. Thibeault, Kevin J. Roberts, Devin Absher, A Mortazavi, Brian A. Williams, Georgi K. Marinov, Diane Trout, Brandon King, Kenneth McCue, Anthony Kirilusha, Gilberto DeSalvo, Katherine Fisher, Henry Amrhein, Shirley Pepke, Jost Vielmetter, Gavin Sherlock, Arend Sidow, Serafim Batzoglou, Rami Rauch, Anshul Kundaje, Max Libbrecht, Elliott H. Margulies, Stephen C. J. Parker, Laura Elnitski, Eric D. Green, Tim Hubbard, Jennifer Harrow, Stephen M. J. Searle, Felix Kokocinski, Bronwen Aken, Adam Frankish, Toby Hunt, Gloria Despacio-Reyes, Mike Kay, Gaurab Mukherjee, Alexandra Bignell, Gary Saunders, Veronika Boychenko, Michael R. Brent, Marijke J. van Baren, Randall H. Brown, Mark Gerstein, Ekta Khurana, Suganthi Balasubramanian, Hugo Y. K. Lam, Philip Cayting, Rebecca Robilotto, Zhi John Lu, Thomas Derrien, Andrea Tanzer, David G. Knowles, Marco Mariotti, David Haussler, Rachel A. Harte, Mark Diekhans, Mike Lin, Alfonso Valencia, Michael L. Tress, Stephen G. Landt, Debasish Raha, Minyi Shi, Ghia Euskirchen, Fabian Grubert, Maya Kasowski, Lian Jin, Phil Lacroute, Youhan Xu, Hannah Monahan, Dorrelyn Patacsil, Teri Slifer, Xinqiong Yang, Alexandra Charos, Brian Reed, Linfeng Wu, Raymond K. Auerbach, Lukas Habegger, Manoj Hariharan, Joel Rozowsky, Alexej Abyzov, Sherman M. Weissman, Kevin Struhl, Nathan Lamarre-Vincent, Marianne Lindahl-Allen, Benoît Miotto, Zarmik Moqtaderi, Joseph D. Fleming, Peter E. Newburger, Peggy J. Farnham, Seth Frietze, Henriette O’Geen, Xiaoqin Xu, Kim Blahnik, Alina R. Cao, Sushma Iyengar, Rajinder Kaul, Robert E. Thurman, Hao Wang, Patrick A. Navas, Richard Sandstrom, Peter J. Sabo, Molly Weaver, Theresa Canfield, Kristen Lee, Shane Neph, Vaughan Roach, Alex Reynolds, Audra Johnson, Eric Rynes, Erika Giste, Shinny Vong, Jun Neri, Tristan Frum, Éric Nguyen, Abigail K. Ebersol, Minerva E. Sanchez, Hadar H. Sheffer, Dimitra Lotakis, Eric Haugen, Richard Humbert, Tanya Kutyavin, Tony Shafer, William Stafford Noble, Job Dekker, Bryan R. Lajoie, Amartya Sanyal, Kate R. Rosenbloom, Timothy R. Dreszer, Brian J. Raney, Galt P. Barber, Laurence R. Meyer, Cricket A. Sloan, Venkat S. Malladi, Melissa Cline, Katrina Learned, Vanessa K. Swing, Ann S. Zweig, Brooke Rhead, Pauline A. Fujita, Krishna M. Roskin, Donna Karolchik, Robert M. Kuhn, Steven P. Wilder, Daniel Sobral, Javier Herrero, Kathryn Beal, Margus Lukk, Alvis Brāzma, Juan M. Vaquerizas, Nicholas M. Luscombe, Peter J. Bickel, Nathan Boley, James B. Brown, Qunhua Li, Haiyan Huang, Andrea Sboner, Kevin Y. Yip, Chao Cheng, Koon Kiu Yan, Nitin Bhardwaj, Jing Wang, Lucas Lochovsky, Justin Jee, Theodore Gibson, Jing Leng, Jie Du, Robert S. Harris, Giltae Song, Webb Miller, Bernard Suh, Benedict Paten, Michael M. Hoffman, Orion J. Buske, Zhiping Weng, Xianjun Dong, Jie Wang, Hualin Simon Xi, Scott A. Tenenbaum, Frank Doyle, Sridar V. Chittur, Luiz O. F. Penalva, Tom Tullius, Kevin P. White, Subhradip Karmakar, Alec Victorsen, Nader Jameel, Nick Bild, Robert L. Grossman, Patrick J. Collins, Nathan D. Trinklein, Morgan C. Giddings, Jainab Khatun, Chris A. Maier, Ting Wang, Troy W. Whitfield, Chen Xian, Yonghao Yu, Harsha Gunawardena, Elise A. Feingold, Rebecca F. Lowdon, Laura A. L. Dillon, Peter J. Good, Brian A. Risk
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.1000595

Genome-Wide and Phase-Specific DNA-Binding Rhythms of BMAL1 Control Circadian Output Functions in Mouse Liver
Cited by: 407
Author(s): Guillaume Rey, François Cesbron, Jacques Rougemont, Hans Reinke, Michael Brunner, Félix Naef
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.1002051

A Novel TGFβ Modulator that Uncouples R-Smad/I-Smad-Mediated Negative Feedback from R-Smad/Ligand-Driven Positive Feedback
Cited by: 7
Author(s): Wenchao Gu, Rui Monteiro, Jie Zuo, Filipa C. Simões, Andrea Martella, Charlotte Andrieu-Soler, Frank Grosveld, Tatjana Sauka‐Spengler, Roger Patient
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pbio.1002026

Specific Phosphorylation of Histone Demethylase KDM3A Determines Target Gene Expression in Response to Heat Shock
Cited by: 43
Author(s): Ming Cheng, Yan Zhang, Chunyu Cao, Wei‐long Zhang, Ye Zhang, Yufei Shen
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.cell.2014.03.048

RECQL5 Controls Transcript Elongation and Suppresses Genome Instability Associated with Transcription Stress
Cited by: 160
Author(s): Marco Saponaro, Theodoros Kantidakis, Richard Mitter, Gavin Kelly, Mark Heron, Hannah Williams, Johannes Söding, Aengus Stewart, Jesper Q. Svejstrup
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pbio.2001220

Smek promotes corticogenesis through regulating Mbd3’s stability and Mbd3/NuRD complex recruitment to genes associated with neurogenesis
Cited by: 20
Author(s): Byoung-San Moon, Hyung-Mun Yun, Wei-Feng Chang, Bradford H. Steele, Mingyang Cai, Si Ho Choi, Wange Lu
Software Mentions: 1
Published: over 7 years ago

10.1002/pld3.16

Genome-wide binding analysis of AtGNC and AtCGA1 demonstrates their cross-regulation and common and specific functions
Cited by: 12
Author(s): Zhenhua Xu, José A. Casaretto, Yong‐Mei Bi, Steven J. Rothstein
Software Mentions: 1
Published: about 7 years ago

10.1186/s12964-019-0369-8

Androgen promotes differentiation of PLZF+ spermatogonia pool via indirect regulatory pattern
Cited by: 18
Author(s): Jingjing Wang, Jinmei Li, Wei Xu, Xia Qin, Yunzhao Gu, Weixiang Song, Xiaoyu Zhang, Yang Yang, Wei Wang, Hua Li, Kang Zou
Software Mentions: 1
Published: over 5 years ago

10.1111/pbi.12886

Verification of DNA motifs <i>in Arabidopsis</i> using CRISPR/Cas9-mediated mutagenesis
Cited by: 18
Author(s): Chenlong Li, Chen Chen, Huhui Chen, Suikang Wang, Xuemei Chen, Yuhai Cui
Software Mentions: 1
Published: almost 7 years ago

10.1038/cddis.2015.159

Tet3 mediates stable glucocorticoid-induced alterations in DNA methylation and Dnmt3a/Dkk1 expression in neural progenitors
Cited by: 40
Author(s): Raj Bose, Ştefan Spulber, Pascal Kilian, Nina Heldring, Peter Lönnerberg, Anna Johnsson, Mirko Conti, Ola Hermanson, Sandra Ceccatelli
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-021-03761-1

CBP/p300 HAT maintains the gene network critical for β cell identity and functional maturity
Cited by: 6
Author(s): Linlin Zhang, Chunxiang Sheng, Feiye Zhou, Ke-Cheng Zhu, Shushu Wang, Qianqian Liu, Miaomiao Yuan, Zhaoqian Xu, Yun Liu, Jieli Lu, Jianmin Liu, Libin Zhou, Xiao Wang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-021-03959-3

HMGB2 orchestrates mitotic clonal expansion by binding to the promoter of C/EBPβ to facilitate adipogenesis
Cited by: 15
Author(s): Keren Chen, Junyan Zhang, Liang Feng, Qi Zhu, Shaohui Cai, Xiao Yan Tong, Zuyong He, Xiaohong Liu, Delin Mo
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-020-03187-1

Engineering of α-PD-1 antibody-expressing long-lived plasma cells by CRISPR/Cas9-mediated targeted gene integration
Cited by: 19
Author(s): Baohong Luo, Yikang Zhan, Meiling Luo, Hongyan Dong, Jun Li, Yingtong Lin, Junsong Zhang, Guanwen Wang, Els Verhoeyen, Yiwen Zhang, Hui Zhang
Software Mentions: 1
Published: about 4 years ago

10.1038/s41419-019-1815-7

Asymmetrical methyltransferase PRMT3 regulates human mesenchymal stem cell osteogenesis via miR-3648
Cited by: 30
Author(s): Min Zhang, Xiaomeng Liu, Zheng Li, Yangge Du, Xuejiao Liu, Longwei Lv, Xiao Zhang, Yunsong Liu, Ping Zhang, Yongsheng Zhou
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.654

Bioinformatic analysis of cis-regulatory interactions between progesterone and estrogen receptors in breast cancer
Cited by: 11
Author(s): Matloob Khushi, Christine L. Clarke, J. Dinny Graham
Software Mentions: 1
Published: about 10 years ago

10.1038/celldisc.2016.8

MLL1 and MLL1 fusion proteins have distinct functions in regulating leukemic transcription program
Cited by: 33
Author(s): Jing Xu, Li Li, Jie Xiong, Aaron D. denDekker, Andrew Ye, Hacer Karataş, Liu Liu, He Wang, Zhaohui S. Qin, Shaomeng Wang, Yali Dou
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.3742

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data
Cited by: 11
Author(s): Tomasz Dzida, Mudassar Iqbal, Iryna Charapitsa, George Reid, Henk Stunnenberg, Filomena Matarese, Korbinian Grote, Antti Honkela, Magnus Rattray
Software Mentions: 1
Published: about 7 years ago

10.1186/1741-7007-9-80

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements
Cited by: 31
Author(s): Morten Rye, Pål Sætrom, Tony Håndstad, Finn Drabløs
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12967-021-03042-7

SLC7A11 regulated by NRF2 modulates esophageal squamous cell carcinoma radiosensitivity by inhibiting ferroptosis
Cited by: 78
Author(s): Lei Feng, Kaikai Zhao, Liming Sun, Xiang Yin, Junpeng Zhang, Conghe Liu, Baosheng Li
Software Mentions: 1
Published: about 3 years ago

10.3390/v10100522

Non-Uniform and Non-Random Binding of Nucleoprotein to Influenza A and B Viral RNA
Cited by: 21
Author(s): Valerie Le Sage, Adalena V Nanni, Amar R. Bhagwat, Dan Snyder, Vaughn S. Cooper, Seema S. Lakdawala, Nara Lee
Software Mentions: 1
Published: about 6 years ago

10.1016/j.celrep.2019.04.101

The lncRNA SLNCR Recruits the Androgen Receptor to EGR1-Bound Genes in Melanoma and Inhibits Expression of Tumor Suppressor p21
Cited by: 50
Author(s): Karyn Schmidt, Johanna S. Carroll, Elaine Yee, Dylan C. Thomas, León Wert-Lamas, Steven C. Neier, Gloria Sheynkman, Justin Ritz, Carl D. Novina
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2017.06.011

In Vivo Regulation of the Zebrafish Endoderm Progenitor Niche by T-Box Transcription Factors
Cited by: 28
Author(s): Andrew C. Nelson, Stephen J. Cutty, Saule N. Gasiunas, Isabella Deplae, Derek L. Stemple, Fiona C. Wardle
Software Mentions: 1
Published: over 7 years ago

10.1038/s41385-019-0169-x

Irf5 deficiency in myeloid cells prevents necrotizing enterocolitis by inhibiting M1 macrophage polarization
Cited by: 27
Author(s): Jia Wei, Daxing Tang, Chao Lu, Jin Yang, Yan-qing Lu, Yidong Wang, Jia Liu, Jianfang Wang, Wei Ru, Yi Lü, Zhejun Cai, Qiang Shu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12915-018-0568-6

Histone variants H2A.Z and H3.3 coordinately regulate PRC2-dependent H3K27me3 deposition and gene expression regulation in mES cells
Cited by: 54
Author(s): Yan Wang, Haizhen Long, Juan Yu, Liping Dong, Michel Wassef, Baowen Zhuo, Xia Li, Ji‐Cheng Zhao, Min Wang, Cuifang Liu, Zengqi Wen, Luyuan Chang, Ping Chen, Qian-fei Wang, Xueqing Xu, Raphaël Margueron, Guohong Li
Software Mentions: 1
Published: about 6 years ago

10.1186/s12915-014-0081-5

Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression
Cited by: 40
Author(s): Andrew C. Nelson, Stephen J. Cutty, Marie Niini, Derek L. Stemple, Paul Flicek, Corinne Houart, Ashley E.E. Bruce, Fiona C. Wardle
Software Mentions: 1
Published: about 10 years ago

10.1016/j.celrep.2016.05.054

T-bet Activates Th1 Genes through Mediator and the Super Elongation Complex
Cited by: 49
Author(s): Arnulf Hertweck, Catherine M. Evans, Malihe Eskandarpour, Jonathan C. Lau, Kristīne Oļeiņika, Ian Jackson, A. Paul Kelly, J. C. Ambrose, Peter Adamson, David J. Cousins, Paul Lavender, Virginia L. Calder, Graham M. Lord, Richard G. Jenner
Software Mentions: 1
Published: over 8 years ago

10.1038/s41385-020-00358-3

Orally desensitized mast cells form a regulatory network with Treg cells for the control of food allergy
Cited by: 21
Author(s): Yoshihiro Takasato, Yosuke Kurashima, Masahiro Kiuchi, Kiyoshi Hirahara, Sayuri Murasaki, Fujimi Arai, Kumi Izawa, Ayako Kaitani, Kaoru Shimada, Yukinobu Saito, Shota Toyoshima, Miho Nakamura, Kumiko Fujisawa, Yoshimichi Okayama, Jun Kunisawa, Masato Kubo, Nobuyuki Takemura, Satoshi Uematsu, Shizuo Akira, Jiro Kitaura, Tsuyoshi Takahashi, Toshinori Nakayama, Hiroshi Kiyono
Software Mentions: 1
Published: over 3 years ago

10.15252/msb.20145114

Allelic expression mapping across cellular lineages to establish impact of non‐coding <scp>SNP</scp> s
Cited by: 19
Author(s): Véronique Adoue, Alicia Schiavi, Nicholas Light, Jonas Carlsson Almlöf, Per Lundmark, Bing Ge, Tony Kwan, Maxime Caron, Lars Rönnblom, Chuan Wang, Shu-Huang Chen, Alison H. Goodall, François Cambien, Panos Deloukas, Willem H. Ouwehand, Ann‐Christine Syvänen, Tomi Pastinen
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.13872

Macrophage production and activation are dependent on TRIM33
Cited by: 24
Author(s): Anne-Sophie Gallouët, F. Ferri, Vanessa Petit, Aude Parcelier, Daniel Lewandowski, Nathalie Gault, Vilma Barroca, Stéphanie Le Gras, Éric Soler, Frank Grosveld, Irwin Davidson, Paul-Henri Roméo
Software Mentions: 1
Published: almost 8 years ago

10.3390/cells9051214

LXRα Regulates ChREBPα Transactivity in a Target Gene-Specific Manner through an Agonist-Modulated LBD-LID Interaction
Cited by: 2
Author(s): Qiong Fan, Rikke Christine Nørgaard, Ivar Grytten, Cecilie Maria Ness, Christin Lucas, Kristin Vekterud, Helen Soedling, Jason Matthews, Roza Berhanu Lemma, Odd S. Gabrielsen, Christian Bindesbøll, Stine Marie Ulven, Hilde I. Nebb, Line M. Grønning-Wang, Thomas Sæther
Software Mentions: 1
Published: over 4 years ago

10.3390/cells8080864

Androgen Receptor-Activated Enhancers Simultaneously Regulate Oncogene TMPRSS2 and lncRNA PRCAT38 in Prostate Cancer
Cited by: 29
Author(s): Zikai Chen, Xuhong Song, Qidong Li, Lingzhu Xie, Tangfei Guo, Ting Su, Chang Tang, Xiaolan Chang, Bin Liang, Dongyang Huang
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9051190

MMTR/Dmap1 Sets the Stage for Early Lineage Commitment of Embryonic Stem Cells by Crosstalk with PcG Proteins
Cited by: 2
Author(s): Young Jin Lee, Sang Jun Son, Chang Su Lim, Min Young Kim, Si Woo Lee, Sang‐Won Lee, Jinseon Jeon, Dong-Soo Ha, Na Rae Jung, Su Youne Han, Byung Rok, Insung Na, Vladimir N. Uversky, Chul Geun Kim
Software Mentions: 1
Published: over 4 years ago

10.1186/s13148-021-01008-6

BRD4 inhibition alleviates mechanical stress-induced TMJ OA-like pathological changes and attenuates TREM1-mediated inflammatory response
Cited by: 10
Author(s): Ziwei Huang, Yang Ren, Lu Zhang, Meiying Zhu, Caixia Zhang, Juan Wen, Li Huang
Software Mentions: 1
Published: almost 4 years ago

10.1186/1868-7083-6-30

Genome-wide methylation profiling of the different stages of hepatitis B virus-related hepatocellular carcinoma development in plasma cell-free DNA reveals potential biomarkers for early detection and high-risk monitoring of hepatocellular carcinoma
Cited by: 49
Author(s): Yiwei Zhao, Feng Xue, Jinfeng Sun, Shicheng Guo, Hongyu Zhang, Bijun Qiu, Jia Geng, Jun Gu, Xiaoyu Zhou, Wei Wang, Zhenfeng Zhang, Ning Tang, Yinghua He, Jian Yu, Qiang Xia
Software Mentions: 1
Published: almost 10 years ago

10.1007/s00438-015-1055-1

Cross talk between cytokine and hyperthermia-induced pathways: identification of different subsets of NF-κB-dependent genes regulated by TNFα and heat shock
Cited by: 16
Author(s): Patryk Janus, Tomasz Stokowy, Roman Jaksik, Katarzyna Szołtysek, Luiza Handschuh, Jan Podkowiński, Wiesława Widłak, Marek Kimmel, Piotr Widłak
Software Mentions: 1
Published: over 9 years ago

10.1186/s13148-019-0639-8

Loss of Msh2 and a single-radiation hit induce common, genome-wide, and persistent epigenetic changes in the intestine
Cited by: 10
Author(s): Maria Herberg, Susann Siebert, Marianne Quaas, Torsten Thalheim, Karen Rother, Michelle Hussong, Janine Altmüller, Christiane Kerner, Joerg Galle, Michal R. Schweiger, Gabriela Aust
Software Mentions: 1
Published: over 5 years ago

10.1186/s40169-014-0036-z

Gene expression profiling of immunomagnetically separated cells directly from stabilized whole blood for multicenter clinical trials
Cited by: 9
Author(s): Martin Letzkus, Evert J. Luesink, Sandrine Starck-Schwertz, Marc Bigaud, Fareed Mirza, Nicole Hartmann, Bernhard Gerstmayer, Uwe Janßen, Andreas Scherer, M. Schumacher, Aurelie Verles, Alessandra Vitaliti, Nanguneri Nirmala, Keith Johnson, Frank Staedtler
Software Mentions: 1
Published: about 10 years ago

10.1101/mcs.a000539

Complete hematologic response of early T-cell progenitor acute lymphoblastic leukemia to the γ-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case
Cited by: 45
Author(s): Birgit Knoechel, Ami S. Bhatt, Pan Li, Chandra Sekhar Pedamallu, Eric Allan Severson, Alejandro Gutiérrez, David M. Dorfman, Frank C. Kuo, Michael J. Kluk, Andrew L. Kung, Patrick A. Zweidler‐McKay, Matthew Meyerson, Stephen C. Blacklow, Daniel J. DeAngelo, Jon C. Aster
Software Mentions: 1
Published: about 9 years ago

10.1038/s42003-020-0898-0

Acetylation of histone H3K27 signals the transcriptional elongation for estrogen receptor alpha
Cited by: 25
Author(s): Yujing Gao, Lijia Chen, Yu Han, Feng Wu, Wen Si Yang, Zheng Zhang, Tong Huo, Yingmin Zhu, Cheng-Tai Yu, Hong Kim, Mark Lee, Zhen Tang, Kevin J. Phillips, Bin He, Sung Yun Jung, Yuanlin Song, Bokai Zhu, Rui Xu, Qin Feng
Software Mentions: 1
Published: over 4 years ago

10.1186/s13039-016-0242-z

The major horse satellite DNA family is associated with centromere competence
Cited by: 19
Author(s): Federico Cerutti, Riccardo Gamba, Alice Mazzagatti, Francesca M. Piras, Eleonora Cappelletti, Elisa Belloni, Solomon G. Nergadze, Elena Raimondi, Elena Giulotto
Software Mentions: 1
Published: over 8 years ago

10.1128/MCB.00597-19

NRF3-POMP-20S Proteasome Assembly Axis Promotes Cancer Development via Ubiquitin-Independent Proteolysis of p53 and Retinoblastoma Protein
Cited by: 32
Author(s): Tsuyoshi Waku, Nanami Nakamura, Misaki Koji, Hidenori Watanabe, Hiroki Katoh, Chika Tatsumi, Natsuko Tamura, Atsushi Hatanaka, Shuuhei Hirose, Hiroyuki Katayama, Makiko Tani, Yuki Kubo, Jun Hamazaki, Takao Hamakubo, Akira Watanabe, Shigeo Murata, Akira Kobayashi
Software Mentions: 1
Published: over 4 years ago

10.1038/s42005-020-0365-8

Nature of the spin resonance mode in CeCoIn5
Cited by: 15
Author(s): Yu Song, Weiyi Wang, John S. Van Dyke, Naveen Pouse, Sheng Ran, D. Yazici, A. Schneidewind, P. Čermák, Yiming Qiu, M. B. Maple, Dirk K. Morr, Pengcheng Dai
Software Mentions: 1
Published: over 4 years ago

10.1155/2012/568950

Identification and Functional Annotation of Genome-Wide ER-Regulated Genes in Breast Cancer Based on ChIP-Seq Data
Cited by: 6
Author(s): Min Ding, Haiyun Wang, Jiajia Chen, Bairong Shen, Zigang Xu
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.molcel.2017.10.009

Smc3 Deacetylation by Hos1 Facilitates Efficient Dissolution of Sister Chromatid Cohesion during Early Anaphase
Cited by: 20
Author(s): Shuyu Li, Zuojun Yue, Tomoyuki Tanaka
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.12630

Proximal and distal regulation of the HYAL1 gene cluster by the estrogen receptor α in breast cancer cells
Cited by: 13
Author(s): Lydia Edjekouane, Samira Benhadjeba, Maïka Jangal, Hubert Fleury, Nicolas Gévry, Eurı́dice Carmona, André Tremblay
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2019.104983

Data of epigenomic profiling of histone marks and CTCF binding sites in bovine rumen epithelial primary cells before and after butyrate treatment
Cited by: 3
Author(s): Xiaolong Kang, Shuli Liu, Lingzhao Fang, Shudai Lin, Mei Liu, R.L. Baldwin, George E. Liu, Congjun Li
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.dib.2016.11.096

Data on master regulators and transcription factor binding sites found by upstream analysis of multi-omics data on methotrexate resistance of colon cancer
Cited by: 5
Author(s): Alexander Kel
Software Mentions: 1
Published: almost 8 years ago

10.1093/database/bav018

TeloPIN: a database of telomeric proteins interaction network in mammalian cells
Cited by: 10
Author(s): Zhenhua Luo, Zhiming Dai, Xiaowei Xie, Xuyang Feng, Dan Liú, Zhou Songyang, Yuanyan Xiong
Software Mentions: 1
Published: over 9 years ago

10.1016/j.molcel.2015.12.001

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program
Cited by: 148
Author(s): Rossana Foti, Stefano Gnan, Daniela Cornacchia, Vishnu Dileep, Aydan Bulut-Karslıoğlu, Sarah Diehl, Andreas Buneß, Felix A. Klein, Wolfgang Huber, Ewan Johnstone, Remco Loos, Paul Bertone, David M. Gilbert, Thomas Manke, Thomas Jenuwein, Sara C. B. Buonomo
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.ydbio.2012.07.002

A cis-regulatory module upstream of deltaC regulated by Ntla and Tbx16 drives expression in the tailbud, presomitic mesoderm and somites
Cited by: 16
Author(s): Leila Jahangiri, Andrew C. Nelson, Fiona C. Wardle
Software Mentions: 1
Published: about 12 years ago

10.1016/j.molcel.2018.08.010

Accurate Recycling of Parental Histones Reproduces the Histone Modification Landscape during DNA Replication
Cited by: 174
Author(s): Nazaret Reverón-Gómez, Cristina González-Aguilera, Kathleen R. Stewart-Morgan, Nataliya Petryk, Valentin Flury, Simona Graziano, Jens Vilstrup Johansen, Janus Schou Jakobsen, Constance Alabert, Anja Groth
Software Mentions: 1
Published: about 6 years ago

10.1242/dev.117838

Brachyury and SMAD signalling collaboratively orchestrate distinct mesoderm and endoderm gene regulatory networks in differentiating human embryonic stem cells
Cited by: 119
Author(s): Tiago Faial, Andreia S. Bernardo, Sasha Mendjan, Evangelia Diamanti, Daniel Ortmann, George E. Gentsch, Victoria L. Mascetti, Matthew Trotter, James C. Smith, Roger A. Pedersen
Software Mentions: 1
Published: over 9 years ago

10.1186/s12943-015-0339-8

Deregulation of the FOXM1 target gene network and its coregulatory partners in oesophageal adenocarcinoma
Cited by: 30
Author(s): Elizabeth F Wiseman, Xi Chen, Namshik Han, Aaron Webber, Zongling Ji, Andrew D Sharrocks, Yeng Ang
Software Mentions: 1
Published: over 9 years ago

10.1186/1476-4598-13-146

A hormone-dependent feedback-loop controls androgen receptor levels by limiting MID1, a novel translation enhancer and promoter of oncogenic signaling
Cited by: 34
Author(s): Andrea Köhler, Ümmühan Demir, Eva Kickstein, Sybille Krauß, J. Aigner, Beatriz Aranda-Orgillés, Antonios I. Karagiannidis, Clemens Achmüller, Huajie Bu, Andrea Wunderlich, Michal-Ruth Schweiger, Georg Schaefer, Susann Schweiger, Helmut Klocker, Rainer Schneider
Software Mentions: 1
Published: over 10 years ago

10.1186/1476-4598-13-215

The DEK oncoprotein binds to highly and ubiquitously expressed genes with a dual role in their transcriptional regulation
Cited by: 28
Author(s): Carl Sandén, Linnea Järvstråt, Andreas Lennartsson, Per Ludvik Brattås, Björn Nilsson, Urban Gullberg
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13041-021-00854-y

Histone modification of pain-related gene expression in spinal cord neurons under a persistent postsurgical pain-like state by electrocautery
Cited by: 3
Author(s): Yosuke Katsuda, Kenichi Tanaka, Tomohisa Mori, Michiko Narita, Hideyuki Takeshima, Takashige Kondo, Yoshiyuki Yamabe, Misa Matsufuji, Daisuke Sato, Yusuke Hamada, Kazuya Yamaguchi, Toshikazu Ushijima, Eiichi Inada, Naoko Kuzumaki, Masako Iseki, Minoru Narita
Software Mentions: 1
Published: about 3 years ago

10.1093/molbev/msaa175

Battle of the Sex Chromosomes: Competition between X and Y Chromosome-Encoded Proteins for Partner Interaction and Chromatin Occupancy Drives Multicopy Gene Expression and Evolution in Muroid Rodents
Cited by: 23
Author(s): C. Moretti, M. Andrés Blanco, Côme Ialy-Radio, Maria-Elisabetta Serrentino, Clara Gobé, Robin Friedman, Christophe Battail, Marjorie Leduc, Monika A. Ward, Daniel Vaiman, Frédéric Torès, Julie Cocquet
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-14-227

A fast weak motif-finding algorithm based on community detection in graphs
Cited by: 12
Author(s): Caiyan Jia, Matthew B. Carson, Jian Yu
Software Mentions: 1
Published: over 11 years ago