Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Liftoff

https://packages.ecosyste.ms/registries/pypi.org/packages/Liftoff

A gene annotation mapping tool
10 versions
Latest release: almost 3 years ago
66 downloads last month

Papers Mentioning Liftoff 11

AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data
Cited by: 5
Author(s): Kyle Fletcher, Lin Zhang, Juliana Gil, Rongkui Han, Keri Cavanaugh, Richard W. Michelmore
Software Mentions: 6
Published: over 3 years ago

10.1093/gbe/evab069

Synteny-Based Genome Assembly for 16 Species of Heliconius Butterflies, and an Assessment of Structural Variation across the Genus
Cited by: 13
Author(s): Fernando Seixas, Nathaniel B. Edelman, James Mallet
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-020-03838-2

Selected abstracts of “Bioinformatics: from Algorithms to Applications 2020” conference
Cited by: 3
Author(s): Robert J. Moore, Michael Barnathan, Brian Fristensky, Yán Li, Greg Knowles, Paul Gardner-Stephen, Angelo Bueti, Peter Anderson, Jianguang Qin, Andrew S. Ball
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pntd.0009504

Developmental changes and metabolic reprogramming during establishment of infection and progression of Trypanosoma brucei brucei through its insect host
Cited by: 16
Author(s): Arunasalam Naguleswaran, Paula Fernandes, Shubha Bevkal, Ruth Rehmann, Pamela Nicholson, Isabel Roditi
Software Mentions: 5
Published: about 3 years ago

10.1186/s13059-021-02430-y

Telomere-to-telomere assembly of a fish Y chromosome reveals the origin of a young sex chromosome pair
Cited by: 29
Author(s): Lingzhan Xue, Yu Gao, Meimei Wu, Tian Tian, Huitao Fan, Yongji Huang, Zhen Huang, Dapeng Li, Luohao Xu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12711-021-00668-5

A near complete genome for goat genetic and genomic research
Cited by: 11
Author(s): Ran Li, Peng Yang, Xuelei Dai, Hojjat Asadollahpour Nanaei, Wenwen Fang, Zhirui Yang, Yi Cai, Zhuqing Zheng, Xihong Wang, Yu Jiang
Software Mentions: 4
Published: about 3 years ago

10.1186/s12870-021-03173-5

A pan-genomic approach to genome databases using maize as a model system
Cited by: 75
Author(s): Margaret R. Woodhouse, Ethalinda K. S. Cannon, John L. Portwood, Lisa C. Harper, Jack M. Gardiner, Mary L. Schaeffer, Carson M. Andorf
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-021-07512-6

Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing
Cited by: 15
Author(s): Aleksandra Bliznina, Aki Masunaga, Michael J. Mansfield, Yongkai Tan, Andrew W. Liu, Charlotte West, Tanmay Rustagi, Hsiao-Chiao Chien, Saurabh Kumar, Julien Pichon, Charles Plessy, Nicholas M. Luscombe
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-020-02047-7

Assembly and annotation of an Ashkenazi human reference genome
Cited by: 41
Author(s): Alaina Shumate, Aleksey V. Zimin, Rachel M. Sherman, Daniela Puiu, Justin Wagner, Nathan D. Olson, Mihaela Pertea, Marc Salit, Justin M. Zook, Steven L. Salzberg
Software Mentions: 1
Published: over 4 years ago

10.1093/g3journal/jkaa047

De novo genome assembly of the tobacco hornworm moth (Manduca sexta)
Cited by: 16
Author(s): Ariel Gershman, Tatiana Gelaf Romer, Yunfan Fan, Roham Razaghi, Wendy A. Smith, Winston Timp
Software Mentions: 1
Published: almost 4 years ago

10.12688/f1000research.25970.1

The genome of the American groundhog, Marmota monax
Cited by: 3
Author(s): Daniela Puiu, Aleksey V. Zimin, Alaina Shumate, Yuchen Ge, Jiabin Qiu, Manoj Bhaskaran, Steven L. Salzberg
Software Mentions: 1
Published: about 4 years ago