pypi: Ion | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0134735

Using DNA Metabarcoding to Identify the Floral Composition of Honey: A New Tool for Investigating Honey Bee Foraging Preferences
Cited by: 189
Author(s): Jennifer Hawkins, Natasha de Vere, Adelaide Griffith, Col R. Ford, Joël Allainguillaume, Matthew J. Hegarty, Les Baillie, Beverley Adams‐Groom
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0171983

GLM-based optimization of NGS data analysis: A case study of Roche 454, Ion Torrent PGM and Illumina NextSeq sequencing data
Cited by: 6
Author(s): Sarah Sandmann, Aniek O. de Graaf, Bert A. van der Reijden, Joop H. Jansen, Martin Dugas
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0159454

Hemophagocytic Lymphohistocytosis in the Chinese Han Population May Be Associated with an STXBP2 Gene Polymorphism
Cited by: 6
Author(s): Li Yang, Yang Tang, Fan Xiao, Jie Xiong, Kefeng Shen, Yanan Liu, Wei Zhang, Li’Chang Zheng, Jianfeng Zhou, Min Xiao
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0093849

Amplicon –Based Metagenomic Analysis of Mixed Fungal Samples Using Proton Release Amplicon Sequencing
Cited by: 50
Author(s): Daniel Tonge, Catherine H. Pashley, Timothy W. Gant
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0247541

Genome-wide identification of 5-methylcytosine sites in bacterial genomes by high-throughput sequencing of MspJI restriction fragments
Cited by: 9
Author(s): Brian P. Anton, Alexey Fomenkov, Victoria Wu, Richard J. Roberts
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0110240

The Feasibility Study of Non-Invasive Fetal Trisomy 18 and 21 Detection with Semiconductor Sequencing Platform
Cited by: 99
Author(s): Young Joo Jeon, Yulin Zhou, Yihan Li, Qiwei Guo, Jinchun Chen, Shengmao Quan, Ahong Zhang, Hailing Zheng, Xingqiang Zhu, Jin Lin, Huan Xu, A-Yang Wu, Sin‐Gi Park, Byung Chul Kim, Hee Jae Joo, Hongliang Chen, Jong Bhak
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0097507

OTG-snpcaller: An Optimized Pipeline Based on TMAP and GATK for SNP Calling from Ion Torrent Data
Cited by: 32
Author(s): Pengyuan Zhu, Lingyu He, Yaqiao Li, Wenpan Huang, Xiaobing Feng, Lin Lin, Qihuan Zhi, Wenwei Zhang, Y. Tom Tang, Chunyu Geng, Zhiyuan Lǚ, Xun Xu
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0120716

Towards the Systematic Mapping and Engineering of the Protein Prenylation Machinery in Saccharomyces cerevisiae
Cited by: 18
Author(s): Viktor Stein, Marta H. Kubala, Jason A. Steen, Sean M. Grimmond, Kirill Alexandrov
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0049602

Use of Four Next-Generation Sequencing Platforms to Determine HIV-1 Coreceptor Tropism
Cited by: 80
Author(s): John Archer, Jan Weber, Kenneth R. Henry, Dane Winner, Richard Gibson, Lawrence Lee, Ellen E. Paxinos, Eric J. Arts, David L. Robertson, Larry Mimms, Miguel E. Quiñones‐Mateu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0181968

Versatile ion S5XL sequencer for targeted next generation sequencing of solid tumors in a clinical laboratory
Cited by: 23
Author(s): Meenakshi Mehrotra, Dzifa Y. Duose, Rajesh R. Singh, Bedia A. Barkoh, Jawad Manekia, Michael A. Harmon, Keyur P. Patel, Mark J. Routbort, L. Jeffrey Medeiros, Ignacio I. Wistuba, Rajyalakshmi Luthra
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0232050

Performance of a multiplexed amplicon-based next-generation sequencing assay for HLA typing
Cited by: 14
Author(s): Chang Liu, Brian Duffy, Eric T. Weimer, Maureen C. Montgomery, Jo Ellen Jennemann, Robert A. Hill, D. Phelan, Lindsay Lay, Bijal A. Parikh
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers13081986

Liquid Biopsy in Pancreatic Cancer: Are We Ready to Apply It in the Clinical Practice?
Cited by: 36
Author(s): Victoria Heredia-Soto, Nuria Rodrı́guez-Salas, Jaime Feliú
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers13061215

Comparative Analysis of Genetic Alterations, HPV-Status, and PD-L1 Expression in Neuroendocrine Carcinomas of the Cervix
Cited by: 11
Author(s): Daisuke Takayanagi, Sou Hirose, Ikumi Kuno, Yuka Asami, Naoya Murakami, Maiko Matsuda, Yôko Shimada, Kuniko Sunami, Masaaki Komatsu, Ryuji Hamamoto, Mayumi Kobayashi Kato, Koji Matsumoto, Takashi Kohno, Tomoyasu Kato, Kouya Shiraishi, Hiroshi Yoshida
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers7030859

Analysis of Pre-Analytic Factors Affecting the Success of Clinical Next-Generation Sequencing of Solid Organ Malignancies
Cited by: 101
Author(s): Hui Chen, Rajyalakshmi Luthra, Rashmi S. Goswami, Rajesh R. Singh, Sinchita Roy‐Chowdhuri
Software Mentions: 1
Published: almost 9 years ago

10.3390/cancers3044191

Cancer Genome Sequencing and Its Implications for Personalized Cancer Vaccines
Cited by: 21
Author(s): Lijin Li, Peter S. Goedegebuure, Elaine R. Mardis, Matthew J. Ellis, Xiuli Zhang, John M. Herndon, Timothy P. Fleming, Beatriz M. Carreño, Ted H. Hansen, William E. Gillanders
Software Mentions: 1
Published: over 12 years ago

10.3390/cancers13123101

Circulating Tumor DNA as a Marker for Treatment Response in Metastatic Melanoma Patients Using Next-Generation Sequencing—A Prospective Feasibility Study
Cited by: 3
Author(s): B.M. Berger, Andrea Thueringer, Doritt Franz, Nadia Dandachi, Emina Talakić, Georg Richtig, Erika Richtig, Peter Michael Rohrer, Lukas Koch, Ingrid Wolf, Catharina Koch, Barbara M. Rainer, Maximilian Koeller, Martin Pichler, Hanno Gerritsmann, Karl Kashofer, Ariane Aigelsreiter
Software Mentions: 1
Published: almost 3 years ago

10.1155/2018/6897935

An X-Linked Hyper-IgM Patient Followed Successfully for 23 Years without Hematopoietic Stem Cell Transplantation
Cited by: 1
Author(s): Necil Kütükçüler, Neslihan Edeer Karaca, Güzide Aksu, Ayça Aykut, Erhan Parıltay, Özgür Çoğulu
Software Mentions: 1
Published: over 5 years ago

10.1002/ccr3.2729

Cardiofaciocutaneous syndrome with rare structural variant in <i>DOCK8</i> gene associated with neurodevelopmental disorders
Cited by: 1
Author(s): Domenico Dell’Edera, Lucantonio Debellis, Angela Mitidieri, Annunziata Anna Epifania, Eustachio Cuscianna, Arianna Allegretti
Software Mentions: 1
Published: over 4 years ago

10.6061/clinics/2021/e2837

Germline and Somatic mutations in postmenopausal breast cancer patients
Cited by: 4
Author(s): Tauana Nagy, Simone Maistro, Giselly Encinas, Maria Lúcia Hirata Katayama, Gláucia Fernanda de Lima Pereira, Nelson Gaburo-Júnior, Lucas Augusto Moysés Franco, Ana Carolina Ribeiro Chaves de Gouvêa, Maria Del Pilar Estevez-Diz, Luiz Antonio Senna Leite, Maria Aparecida Azevedo Koike Folgueira
Software Mentions: 1
Published: over 3 years ago

10.1101/mcs.a001131

KBG syndrome involving a single-nucleotide duplication in <i>ANKRD11</i>
Cited by: 13
Author(s): Robert Kleyner, Janet Malcolmson, David Tegay, Kenneth Ward, Annette Maughan, Glenn Maughan, Lesa Nelson, Kai Wang, Reid Robison, Gholson J. Lyon
Software Mentions: 1
Published: over 7 years ago

10.1016/j.csbj.2019.10.004

Applications and analysis of targeted genomic sequencing in cancer studies
Cited by: 72
Author(s): Findlay Bewicke-Copley, Emil Kumar, Giuseppe Palladino, Koorosh Korfi, Jun Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/curroncol28040223

Overcoming of Microenvironment Protection on Primary Chronic Lymphocytic Leukemia Cells after Treatment with BTK and MDM2 Pharmacological Inhibitors
Cited by: 2
Author(s): Erika Rimondi, Elisabetta Melloni, Arianna Romani, Veronica Tisato, Fabio Casciano, Gian Matteo Rigolin, Daniela Milani, Claudio Celeghini, Giorgio Zauli, Paola Secchiero, Rebecca Voltan
Software Mentions: 1
Published: almost 3 years ago

10.1186/s13000-015-0403-0

Quality control material for the detection of somatic mutations in fixed clinical specimens by next-generation sequencing
Cited by: 13
Author(s): Catherine I. Dumur, Jorge A. Almenara, Celeste N. Powers, Andrea Ferreira‐Gonzalez
Software Mentions: 1
Published: over 8 years ago

10.1186/s13000-020-01052-5

Quality assessment of a clinical next-generation sequencing melanoma panel within the Italian Melanoma Intergroup (IMI)
Cited by: 0
Author(s): Irene Vanni, Milena Casula, Lorenza Pastorino, Antonella Manca, Bruna Dalmasso, Virginia Andreotti, Marina Pisano, Maria Colombino, Ulrich Pfeffer, Enrica T. Tanda, Carla Rozzo, Panagiotis Paliogiannis, Antonio Cossu, Paola Ghiorzo, Giuseppe Palmieri
Software Mentions: 1
Published: over 3 years ago

10.12688/f1000research.18721.2

Mutation profiling of anaplastic ependymoma grade III by Ion Proton next generation DNA sequencing
Cited by: 6
Author(s): Ejaz Muhammad Butt, Sabra Alyami, T. Nageeti, Muhammad Saeed, Khalid Alquthami, Abdellatif Bouazzaoui, Mohammad Athar, Zainularifeen Abduljaleel, Faisal A. Al‐Allaf, Mohiuddin M. Taher
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcimb.2021.689197

Low-Abundant Microorganisms: The Human Microbiome’s Dark Matter, a Scoping Review
Cited by: 22
Author(s): Jéssica Alves de Cena, Jiangying Zhang, Dongsheng Deng, Nailê Damé‐Teixeira, Thuy Do
Software Mentions: 1
Published: about 3 years ago

10.3389/fendo.2021.727915

Upregulation of Mir342 in Diet-Induced Obesity Mouse and the Hypothalamic Appetite Control
Cited by: 4
Author(s): Dongxiao Zhang, Satoshi Yamaguchi, Xinhao Zhang, Boxuan Yang, Naoko Kurooka, Ryosuke Sugawara, Haya Hamed Hassan Albuayjan, Atsuko Nakatsuka, Jun Eguchi, Takeshi Y. Hiyama, Atsunori Kamiya, Jun Wada
Software Mentions: 1
Published: almost 3 years ago

10.3389/fgene.2021.620337

Allelic Dropout Is a Common Phenomenon That Reduces the Diagnostic Yield of PCR-Based Sequencing of Targeted Gene Panels
Cited by: 22
Author(s): Anna Shestak, А. А. Букаева, Siamak Saber, Elena Zaklyazminskaya
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2020.581041

Broadening the Applicability of a Custom Multi-Platform Panel of Microhaplotypes: Bio-Geographical Ancestry Inference and Expanded Reference Data
Cited by: 17
Author(s): M. de la Puente, Jorge Ruiz-Ramírez, A. Ambroa-Conde, Catarina Xavier, Jorge Amigo, María Ángeles Casares de Cal, Antonio Gómez-Tato, Ángel Carracedo, Walther Parson, Christopher Phillips, Marı́a Victoria Lareu
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2019.00316

Targeted NGS Platforms for Genetic Screening and Gene Discovery in Primary Immunodeficiencies
Cited by: 35
Author(s): Cristina Cifaldi, Immacolata Brigida, Federica Barzaghi, Matteo Zoccolillo, Valentina Ferradini, Davide Petricone, Maria Pia Cicalese, Dejan Lazarevic, Davide Cittaro, Maryam Omrani, Enrico Attardi, Francesca Conti, Alessia Scarselli, Maria Chiriaco, Silvia Di Cesare, Francesco Licciardi, Davide Montin, Francesca Ferrua, Clementina Canessa, Claudio Pignata, Silvia Giliani, Simona Ferrari, Georgia Fousteri, Graziano Barera, Pietro Merli, Paolo Palma, Simone Cesaro, Marco Gattorno, Antonio Trizzino, Viviana Moschese, L Chini, Anna Villa, Chiara Azzari, Andrea Finocchi, Franco Locatelli, Paolo Rossi, Federica Sangiuolo, Alessandro Aiuti, Caterina Cancrini, Gigliola Di Matteo
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2018.02868

Exploring the Human Microbiome: The Potential Future Role of Next-Generation Sequencing in Disease Diagnosis and Treatment
Cited by: 182
Author(s): Muneer Ahmad Malla, Anamika Dubey, Ashwani Kumar, Shweta Yadav, Abeer Hashem
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.02424

Development of a Potent and Protective Germline-Like Antibody Lineage Against Zika Virus in a Convalescent Human
Cited by: 12
Author(s): Fei Gao, Xue Lin, Linling He, Ruoke Wang, Han Wang, Xuanling Shi, Fuchun Zhang, Chibiao Yin, Linqi Zhang, Jiang Zhu, Long-Chuan Yu
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2014.00508

Application of high-throughput sequencing in understanding human oral microbiome related with health and disease
Cited by: 219
Author(s): Hui Chen, Wen Jiang
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2019.00794

Molecular Diagnosis of Drug-Resistant Tuberculosis; A Literature Review
Cited by: 68
Author(s): Thi Ngoc Anh Nguyen, Véronique Anton-Le Berre, Anne‐Laure Bañuls, Thi Van Anh Nguyen
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.02285

The Planktonic Core Microbiome and Core Functions in the Cattle Rumen by Next Generation Sequencing
Cited by: 49
Author(s): Roland Wirth, Gyula Kádár, Balázs Kakuk, Gergely Maróti, Zoltán Bagi, Árpád Szilágyi, Gábor Rákhely, J. Horváth, Kornél L. Kovács
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.00660

Molecular Characterization and Meta-Analysis of Gut Microbial Communities Illustrate Enrichment of Prevotella and Megasphaera in Indian Subjects
Cited by: 96
Author(s): Shrikant Bhute, Pranav Pande, Sudarshan A. Shetty, Rahul Shelar, Sachin Mane, Shreyas V. Kumbhare, Ashwini Gawali, Hemal Makhani, Mohit Navandar, Dhiraj Dhotre, Himangi Lubree, Dhiraj Agarwal, Rutuja Patil, Shantanu Ozarkar, Surendra Ghaskadbi, Chittaranjan S. Yajnik, Sanjay Juvekar, Govind Makharia, Yogesh S. Shouche
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2019.01084

Evaluating the Effect of QIIME Balanced Default Parameters on Metataxonomic Analysis Workflows With a Mock Community
Cited by: 6
Author(s): Dimitrios Kioroglou, Albert Mas, María del Carmen Machuca Portillo
Software Mentions: 1
Published: about 5 years ago

10.3389/fneur.2019.00434

Diagnostic Yield and Treatment Impact of Targeted Exome Sequencing in Early-Onset Epilepsy
Cited by: 62
Author(s): Michelle Demos, Ilaria Guella, C DeGuzman, Michael McKenzie, Sarah E. Buerki, Daniel M. Evans, Eric B. Toyota, Cyrus Boelman, Linda Huh, Anita Datta, Aspasia Michoulas, Kathryn Selby, Bruce Björnson, Gabriella Horváth, Elena Lopez-Rangel, Clara van Karnebeek, Ramona Salvarinova, Erin Slade, Patrice Eydoux, Shelin Adam, Margot I. Van Allen, Tanya N. Nelson, Corneliu Bolbocean, Mary Connolly, Matthew J. Farrer
Software Mentions: 1
Published: about 5 years ago

10.3389/fneur.2017.00570

Two Novel Mutations Associated With Ataxia-Telangiectasia Identified Using an Ion AmpliSeq Inherited Disease Panel
Cited by: 7
Author(s): Maria V. Kuznetsova, Trofimov D.Yu. Trofimov, Jekaterina Shubina, Taisiya O. Kochetkova, N A Karetnikova, I. Yu. Barkov, V A Bakharev, Oleg Gusev, Г. Т. Сухих
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2021.635488

Cutaneous Melanoma Classification: The Importance of High-Throughput Genomic Technologies
Cited by: 35
Author(s): Cristian Scatena, Daniela Murtas, Sara Tomei
Software Mentions: 1
Published: about 3 years ago

10.3389/fonc.2020.00506

Biological Difference Between Epstein–Barr Virus Positive and Negative Post-transplant Lymphoproliferative Disorders and Their Clinical Impact
Cited by: 20
Author(s): Valeria Ferla, Francesca Gaia Rossi, Maria Goldaniga, Luca Baldini
Software Mentions: 1
Published: about 4 years ago

10.3389/fphys.2017.00612

Genetic Bases of Bicuspid Aortic Valve: The Contribution of Traditional and High-Throughput Sequencing Approaches on Research and Diagnosis
Cited by: 52
Author(s): Betti Giusti, Elena Sticchi, Rosina De Cario, Alberto Magi, Stefano Nistri, Guglielmina Pepe
Software Mentions: 1
Published: almost 7 years ago

10.3389/fsurg.2020.596925

Current Novel Advances in Bronchoscopy
Cited by: 6
Author(s): Jeffrey Jiang, Stephanie H. Chang, Amie J. Kent, Travis C. Geraci, Robert J. Cerfolio
Software Mentions: 1
Published: over 3 years ago

10.3390/genes8100264

Targeted Next-Generation Sequencing Identification of Mutations in Disease Resistance Gene Analogs (RGAs) in Wild and Cultivated Beets
Cited by: 10
Author(s): Piergiorgio Stevanato, Chiara Broccanello, Luca Pajola, Filippo Biscarini, Christopher J. Richards, Lee Panella, Mahdi Hassani, Elide Formentin, Claudia Chiodi, Giuseppe Concheri, Bahram Heidari
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9050267

Validation of Ion TorrentTM Inherited Disease Panel with the PGMTM Sequencing Platform for Rapid and Comprehensive Mutation Detection
Cited by: 9
Author(s): Abeer E. Mustafa, Tariq Faquih, Batoul Baz, Rana F. Kattan, Abdulelah AlIssa, Asma Tahir, Faiqa Imtiaz, Khushnooda Ramzan, Moeenaldeen AlSayed, Mohammed Al–Owain, Zuhair N. Al‐Hassnan, Hamad Alzaidan, Mohamed Abouelhoda, Bashayer Al-Mubarak, Nada Al Tassan
Software Mentions: 1
Published: about 6 years ago

10.3390/genes11080929

Evaluation of the Ion AmpliSeq SARS-CoV-2 Research Panel by Massive Parallel Sequencing
Cited by: 27
Author(s): Federica Alessandrini, Sara Caucci, Valerio Onofri, Filomena Melchionda, Adriano Tagliabracci, Patrizia Bagnarelli, Laura Di Sante, Chiara Turchi, Stefano Menzo
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes12060837

Health Characteristics of Patients with Cystic Fibrosis whose Genotype Includes a Variant of the Nucleotide Sequence c.3140-16T>A and Functional Analysis of this Variant
Cited by: 6
Author(s): E.I. Kondratyeva, Т. Б. Бухарова, А. Ефремова, Y. Melyanovskaya, N. Bulatenko, Ksenia Davydenko, Alexandra Filatova, Mikhail Skoblov, S. Krasovsky, Н. В. Петрова, A. V. Polyakov, T. Adyan, E. Amelina, V. Shadrina, E. Zhekaite, A. Zodbinova, Alexander V. Chernyak, Р. А. Зинченко, С. И. Куцев, D. V. Goldshtein
Software Mentions: 1
Published: about 3 years ago

10.3390/genes12060864

Epigenetic Modification of Death Receptor Genes for TRAIL and TRAIL Resistance in Childhood B-Cell Precursor Acute Lymphoblastic Leukemia
Cited by: 4
Author(s): Atsushi Watanabe, Kunio Miyake, Koshi Akahane, Kumiko Goi, Keiko Kagami, Hideo Yagita, Takeshi Inukai
Software Mentions: 1
Published: almost 3 years ago

10.3390/genes12071080

NGS Analysis of Liquid Biopsy (LB) and Formalin-Fixed Paraffin-Embedded (FFPE) Melanoma Samples Using Oncomine™ Pan-Cancer Cell-Free Assay
Cited by: 4
Author(s): Magdalena Olbryt, Marcin Rajczykowski, Wiesław Bal, Anna Fiszer-Kierzkowska, Alexander Jorge Cortez, Magdalena Mazur, Rafał Suwiński, Wiesława Widłak
Software Mentions: 1
Published: almost 3 years ago

10.1590/1678-4685-GMB-2018-0102

Phenotype-oriented NGS panels for mucopolysaccharidoses: Validation and potential use in the diagnostic flowchart
Cited by: 9
Author(s): Ana Carolina Brusius‐Facchin, Marina Siebert, Delva Pereira Leão, Diana Rojas Málaga, Gabriela Pasqualim, Franciele Barbosa Trapp, Úrsula da Silveira Matte, Roberto Giugliani, Sandra Leistner-Segal
Software Mentions: 1
Published: over 5 years ago

10.1128/genomeA.00452-13

Draft Genome Sequence of Arthrobacter crystallopoietes Strain BAB-32, Revealing Genes for Bioremediation
Cited by: 6
Author(s): Madhvi Joshi, A. S. Pandit, Anukriti Sharma, Rohan V. Pandya, Siddhi Desai, Anupam Saxena, S. B. Bagatharia
Software Mentions: 1
Published: almost 11 years ago

10.1128/genomeA.00634-14

Draft Genome Sequence of Enterococcus faecalis MB5259
Cited by: 0
Author(s): Andrey V. Karlyshev, Joris Robyn, Geertrui Rasschaert, Marc Heyndrickx
Software Mentions: 1
Published: almost 10 years ago

10.1128/genomeA.00919-14

Whole-Genome Sequencing of Streptomycin-Resistant Mycobacterium tuberculosis Isolate VRFCWCF MRTB 180 Reveals Novel and Potential Mutations for Resistance
Cited by: 2
Author(s): R Gayathri, Dhanurekha Lakshmipathy, Umashankar Vetrivel, Lily Therese Kulandai, H. N. Madhavan, Sridhar Ramaswamy, N. Meenakshi
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.00977-14

Genome Sequence of Corynebacterium pseudotuberculosis MB20 bv. equi Isolated from a Pectoral Abscess of an Oldenburg Horse in California
Cited by: 6
Author(s): Rafael A. Baraúna, Luís Carlos Guimarães, Adonney Allan de Oliveira Veras, Pablo Henrique Caracciolo Gomes de Sá, Diego Assis das Graças, Kenny C. Pinheiro, Andreia S. S. Silva, Edson Luiz Folador, Leandro de Jesus Benevides, Marcus Vinícius Canário Viana, Adriana Ribeiro Carneiro, Maria Paula Cruz Schneider, Sharon J. Spier, Judy M. Edman, Rui A. R. Ramos, Vasco Azevedo, Artur M. S. Silva
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.01173-14

Whole-Genome Sequencing and Mutation Analysis of Two Extensively Drug-Resistant Sputum Isolates of Mycobacterium tuberculosis (VRFCWCF XDRTB 232 and VRFCWCF XDRTB 1028) from Chennai, India
Cited by: 3
Author(s): Lily Therese Kulandai, Dhanurekha Lakshmipathy, R Gayathri, Umashankar Vetrivel, Madhavan Hajib Narahari Rao, Sridhar Ramaswamy, N. Meenakshi
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.01065-15

Complete Genome Sequences of Hepatitis B Virus from North India Using Ion Torrent
Cited by: 1
Author(s): Shantanu Prakash, Amita Jain, Akanksha Seth, Bhawana Jain
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.01293-17

Complete Genome Sequences of BK Polyomavirus Strains from Two Patients with Urinary Tract Infection, Sequenced Using the Ion Torrent Platform
Cited by: 0
Author(s): Graham Rose, Kyriaki Ranellou, Raju Misra, Colin M. Crump, David Wooldridge, Surendra Parmar, Christopher Maddren, Saheer E. Gharbia, Hamid Jalal
Software Mentions: 1
Published: over 6 years ago

10.1186/s13073-016-0385-x

The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs
Cited by: 39
Author(s): Jody Phelan, Denise M O’Sullivan, Diana Machado, Jorge Ramos, Alexandra S. Whale, Justin O’Grady, Keertan Dheda, Susana Campino, Ruth McNerney, Miguel Viveiros, Jim F. Huggett, Taane G. Clark
Software Mentions: 1
Published: over 7 years ago

10.1186/s13073-017-0478-1

Cancer gene profiling in non-small cell lung cancers reveals activating mutations in JAK2 and JAK3 with therapeutic implications
Cited by: 34
Author(s): Shuyu D. Li, Meng Ma, Hui Li, Aneta Waluszko, Tatyana Sidorenko, Eric E. Schadt, David Y. Zhang, Rong Chen, Fei Ye
Software Mentions: 1
Published: over 6 years ago

10.1007/s13577-020-00347-5

Kasumi leukemia cell lines: characterization of tumor genomes with ethnic origin and scales of genomic alterations
Cited by: 4
Author(s): Fumie Kasai, Hiroya Asou, Midori Ozawa, Kazuhiko Kobayashi, Hiroyuki Kuramitsu, Masaharu Satoh, Arihiro Kohara, Yasuhiko Kaneko, Minoru Kawamura
Software Mentions: 1
Published: about 4 years ago

10.1186/s40709-019-0095-9

Comparative analysis of differentially expressed genes between the ovaries from pregnant and nonpregnant goats using RNA-Seq
Cited by: 12
Author(s): Qing Quan, Qi Zheng, Yinghui Ling, Fugui Fang, Mingxing Chu, Xiaorong Zhang, Yong Liu, Wenyong Li
Software Mentions: 1
Published: about 5 years ago

10.3390/jcm9061648

Frontiers of Robotic Colonoscopy: A Comprehensive Review of Robotic Colonoscopes and Technologies
Cited by: 55
Author(s): Gastone Ciuti, Karolina Skonieczna-Żydecka, Wojciech Marlicz, Veronica Iacovacci, Hongbin Liu, Danail Stoyanov, Alberto Arezzo, Marcello Chiurazzi, Ervin Tóth, Henrik Thorlacius, P. Dario, Anastasios Koulaouzidis
Software Mentions: 1
Published: about 4 years ago

10.1128/JCM.00235-16

A Method for Amplicon Deep Sequencing of Drug Resistance Genes in Plasmodium falciparum Clinical Isolates from India
Cited by: 40
Author(s): Pavitra N. Rao, Swapna Uplekar, Sriti Kayal, Prashant K. Mallick, Nabamita Bandyopadhyay, Sonal Kale, O. P. Singh, Akshaya Kumar Mohanty, Sanjib Mohanty, Samuel C. Wassmer, Jane M. Carlton
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1002359

Evolution of Multidrug Resistance during Staphylococcus aureus Infection Involves Mutation of the Essential Two Component Regulator WalKR
Cited by: 277
Author(s): Benjamin P Howden, Christopher R. E. McEvoy, David Leslie Allen, Kyra Chua, Wei Gao, Paul F. Harrison, Jan M. Bell, Geoffrey W. Coombs, Vicki Bennett-Wood, Jessica L. Porter, Roy M. Robins-Browne, John K. Davies, Torsten Seemann, Timothy P. Stinear
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004836

Circulating Pneumolysin Is a Potent Inducer of Cardiac Injury during Pneumococcal Infection
Cited by: 95
Author(s): Yasir Alhamdi, Daniel R. Neill, Simon T. Abrams, Hesham A. Malak, Reham Yahya, Richard Barrett‐Jolley, Guozheng Wang, Aras Kadioglu, Cheng‐Hock Toh
Software Mentions: 1
Published: about 9 years ago

10.1155/2018/2836389

Sequencing Alpha-1 MZ Individuals Shows Frequent Biallelic Mutations
Cited by: 8
Author(s): Kimberly Foil, Mary G. Blanton, C. J. Sanders, Joannah Kim, Haitham S. Al Ashry, Suchit Kumbhare, Charlie Strange
Software Mentions: 1
Published: over 5 years ago

10.1186/s12931-019-1205-9

Prognostic impact of tumor mutation burden and the mutation in KIAA1211 in small cell lung cancer
Cited by: 11
Author(s): Mengting Zhou, Jun Fan, Zhenyu Li, Pin-Dong Li, Yajie Sun, Yuhui Yang, Xiaoshu Zhou, Jing Wang, Ye Wang, Hao Qi, Weiping Cai, Xin Dai, Fred R. Hirsch
Software Mentions: 1
Published: over 4 years ago

Projects: pypi: Ion

Papers Mentioning Ion 368