pypi: Harmony | Projects | Ecosyste.ms: Papers

10.1121/1.5079636

Development and validation of a spectro-temporal processing test for cochlear-implant listeners
Cited by: 24
Author(s): Alan Archer-Boyd, Rosy Southwell, John M. Deeks, Richard E. Turner, Robert P. Carlyon
Software Mentions: 3
Published: about 6 years ago

10.1093/gigascience/giab026

High-throughput microscopy reveals the impact of multifactorial environmental perturbations on colorectal cancer cell growth
Cited by: 6
Author(s): Chun-Te Chiang, Roy Lau, Ahmadreza Ghaffarizadeh, Matthew Brovold, Dipen Vyas, Edwin F. Juarez, Anthony Atala, David B. Agus, Shay Söker, Paul Macklin, Daniel Ruderman, Shannon M. Mumenthaler
Software Mentions: 3
Published: over 3 years ago

10.15252/msb.202110207

A genome‐scale yeast library with inducible expression of individual genes
Cited by: 30
Author(s): Yuko Arita, Griffin Kim, Li Z, Helena Friesen, Gina Turco, Rebecca Y. Wang, Dale Climie, Matej Ušaj, Manuel Hotz, Emily H. Stoops, Anastasia Baryshnikova, Charles Boone, David Botstein, Brenda Andrews, R. Scott McIsaac
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-018-37169-3

Physical plasma-treated saline promotes an immunogenic phenotype in CT26 colon cancer cells in vitro and in vivo
Cited by: 103
Author(s): Eric Freund, Kim Rouven Liedtke, Julia van der Linde, Hans‐Robert Metelmann, Claus–Dieter Heidecke, Lars-Ivo Partecke, Sander Bekeschus
Software Mentions: 3
Published: almost 6 years ago

10.3390/cancers13081776

Activated Regulatory T-Cells, Dysfunctional and Senescent T-Cells Hinder the Immunity in Pancreatic Cancer
Cited by: 22
Author(s): Shivan Sivakumar, Enas Abu-Shah, David Ahern, Edward H. Arbe-Barnes, Ashwin Kumar Jainarayanan, Nagina Mangal, Srikanth Reddy, Anikó Rendek, Alistair Easton, Elke Kurz, Michael Silva, Zahir Soonawalla, Lara Heij, Rachael Bashford-Rogers, Mark R. Middleton, Michael L. Dustin
Software Mentions: 3
Published: over 3 years ago

10.1016/j.redox.2019.101423

xCT (SLC7A11) expression confers intrinsic resistance to physical plasma treatment in tumor cells
Cited by: 46
Author(s): Sander Bekeschus, Sebastian Eisenmann, Sanjeev Kumar Sagwal, Yana Bodnar, Juliane Moritz, Broder Poschkamp, Ingo Stoffels, Steffen Emmert, Muniswamy Madesh, K.‐D. Weltmann, Thomas von Woedtke, Rajesh Kumar Gandhirajan
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13059-017-1384-y

Epidermal Wnt signalling regulates transcriptome heterogeneity and proliferative fate in neighbouring cells
Cited by: 16
Author(s): Arsham Ghahramani, Giacomo Donati, Nicholas M. Luscombe, Fiona M. Watt
Software Mentions: 3
Published: almost 7 years ago

10.3390/cancers12071993

Plasma Treatment Limits Cutaneous Squamous Cell Carcinoma Development In Vitro and In Vivo
Cited by: 23
Author(s): Gabriella Pasqual-Melo, Thiago Henrique Daniel do Nascimento, Larissa Juliani Sanches, Fernanda Paschoal Blegniski, Julya Karen Bianchi, Sanjeev Kumar Sagwal, Julia Berner, Anke Schmidt, Steffen Emmert, Klaus‐Dieter Weltmann, Thomas von Woedtke, Rajesh Kumar Gandhirajan, Alessandra Lourenço Cecchini, Sander Bekeschus
Software Mentions: 3
Published: over 4 years ago

10.1126/sciadv.abg3013

C9orf72 -derived arginine-containing dipeptide repeats associate with axonal transport machinery and impede microtubule-based motility
Cited by: 51
Author(s): Laura Fumagalli, Florence L. Young, Steven Boeynaems, Mathias De Decker, Arpan R. Mehta, Ann Swijsen, Raheem Fazal, Wenting Guo, Matthieu Moisse, Jimmy Beckers, Lieselot Dedeene, Bhuvaneish T. Selvaraj, Tijs Vandoorne, Vanesa Madan, Marka van Blitterswijk, Denitza Raitcheva, Alexander McCampbell, Koen Poesen, Aaron D. Gitler, Philipp Koch, Pieter Vanden Berghe, Dietmar Rudolf Thal, Cathérine Verfaillie, Siddharthan Chandran, Ludo Van Den Bosch, Simon L. Bullock, Philip Van Damme
Software Mentions: 3
Published: over 3 years ago

10.3389/fonc.2021.620989

Characterization of the Tumor Immune Microenvironment in Lung Squamous Cell Carcinoma Using Imaging Mass Cytometry
Cited by: 17
Author(s): Ran Li, Ying Lin, Yu Wang, Shaoyuan Wang, Yang Yang, Xinlin Mu, Yu‐Sheng Chen, Zhancheng Gao
Software Mentions: 3
Published: over 3 years ago

10.3389/fnins.2018.00504

Clusterin Is Required for β-Amyloid Toxicity in Human iPSC-Derived Neurons
Cited by: 38
Author(s): Jacqueline Robbins, Leo Perfect, Elena M. Ribé, Marcello Maresca, Adrià Dangla-Valls, Evangeline M. Foster, Richard Killick, Paulina Nowosiad, Matthew J. Reid, Lucia Dutan Polit, Alejo J. Nevado, Daniel Ebner, Mohammad Bohlooly‐Y, Noel J. Buckley, Menelas N. Pangalos, Jack Price, Simon Lovestone
Software Mentions: 3
Published: over 6 years ago

10.3389/fphar.2020.592903

A Mechanism of Action Study on Danggui Sini Decoction to Discover Its Therapeutic Effect on Gastric Cancer
Cited by: 8
Author(s): Bo Pan, Yun Wang, Chunnuan Wu, Junrong Jia, Can Huang, Shumin Fang, Liren Liu
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.cmet.2020.05.007

Exome Sequencing Identifies Genes and Gene Sets Contributing to Severe Childhood Obesity, Linking PHIP Variants to Repressed POMC Transcription
Cited by: 32
Author(s): Gaëlle Marenne, Audrey E. Hendricks, Aliki Perdikari, Rebecca Bounds, Felicity Payne, Julia M. Keogh, Christopher J. Lelliott, Elana Henning, Saad Pathan, Sofie Ashford, Elena G. Bochukova, Vanisha Mistry, Allan Daly, Caroline Hayward, Nicholas J. Wareham, Stephen O’Rahilly, Claudia Langenberg, Eleanor Wheeler, Eleftheria Zeggini, I. Sadaf Farooqi, Inês Barroso
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2021.679521

Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis
Cited by: 8
Author(s): Brittany Rocque, Arianna Barbetta, Pranay Singh, Cameron Goldbeck, Doumet Georges Helou, Yong-Hwee Eddie Loh, Nolan Ung, Jerry Lee, Omid Akbari, Juliet Emamaullee
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-021-04150-3

Analysis of single-cell RNA sequencing data based on autoencoders
Cited by: 12
Author(s): Andrea Tangherloni, Federico Ricciuti, Daniela Besozzi, Píetro Lió, Ana Cvejic
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2021.636743

DEEPsc: A Deep Learning-Based Map Connecting Single-Cell Transcriptomics and Spatial Imaging Data
Cited by: 21
Author(s): Floyd Maseda, Zixuan Cang, Qing Nie
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-018-31031-2

Cytochrome C oxidase Inhibition and Cold Plasma-derived Oxidants Synergize in Melanoma Cell Death Induction
Cited by: 37
Author(s): Rajesh Kumar Gandhirajan, Katrin Rödder, Yana Bodnar, Gabriella Pasqual-Melo, Steffen Emmert, Corinne E. Griguer, Klaus‐Dieter Weltmann, Sander Bekeschus
Software Mentions: 3
Published: about 6 years ago

10.1093/braincomms/fcab105

Use of high-content imaging to quantify transduction of AAV-PHP viruses in the brain following systemic delivery
Cited by: 6
Author(s): Edward J. Smith, Pamela Farshim, Rachel Flomen, Samuel T. Jones, Sean J McAteer, Benjamin E. Deverman, Viviana Gradinaru, Gillian P. Bates
Software Mentions: 3
Published: over 3 years ago

10.1016/j.molcel.2018.06.032

HuD Is a Neural Translation Enhancer Acting on mTORC1-Responsive Genes and Counteracted by the Y3 Small Non-coding RNA
Cited by: 47
Author(s): Toma Tebaldi, Paola Zuccotti, Daniele Peroni, Marcel Köhn, Lisa Gasperini, Valentina Potrich, Veronica Bonazza, Tatiana Dudnakova, Annalisa Rossi, Guido Sanguinetti, Luciano Conti, Paolo Macchi, Vito D’Agostino, Gabriella Viero, David Tollervey, Stefan Hüttelmaier, Alessandro Quattrone
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2021.708981

deepMNN: Deep Learning-Based Single-Cell RNA Sequencing Data Batch Correction Using Mutual Nearest Neighbors
Cited by: 10
Author(s): Bin Zou, Tongda Zhang, Ruilong Zhou, Xiaoying Jiang, Huanming Yang, Xin Jin, Yong Bai
Software Mentions: 3
Published: over 3 years ago

10.1038/s12276-020-0422-0

Single-cell transcriptomics in cancer: computational challenges and opportunities
Cited by: 96
Author(s): Jean Fan, Kamil Slowikowski, Fan Zhang
Software Mentions: 3
Published: about 4 years ago

10.1038/s42003-021-02562-8

Identification of distinct tumor cell populations and key genetic mechanisms through single cell sequencing in hepatoblastoma
Cited by: 13
Author(s): Alexander Bondoc, Kathryn Glaser, Kang Jin, Charissa Lake, Stefano Cairo, James I. Geller, Gregory M. Tiao, Bruce J. Aronow
Software Mentions: 3
Published: about 3 years ago

10.3390/cells9051144

Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mice
Cited by: 18
Author(s): Anne-Marie Galow, Markus Wolfien, Paula Müller, Madeleine Bartsch, Ronald M. Brunner, Andreas Hoeflich, Olaf Wolkenhauer, Róbert Dávid, Tom Goldammer
Software Mentions: 3
Published: over 4 years ago

10.1155/2017/4396467

Toxicity and Immunogenicity in Murine Melanoma following Exposure to Physical Plasma-Derived Oxidants
Cited by: 51
Author(s): Sander Bekeschus, Katrin Rödder, Bob Fregin, Oliver Otto, Maxi Lippert, Klaus‐Dieter Weltmann, Kristian Wende, Anke Schmidt, Rajesh Kumar Gandhirajan
Software Mentions: 3
Published: almost 8 years ago

10.3389/fgene.2021.644211

CBA: Cluster-Guided Batch Alignment for Single Cell RNA-seq
Cited by: 1
Author(s): Wenbo Yu, Ahmed Mahfouz, Marcel J. T. Reinders
Software Mentions: 3
Published: over 3 years ago

10.15252/emmm.201809930

A genome‐wide <scp>RNA</scp> i screen reveals essential therapeutic targets of breast cancer stem cells
Cited by: 19
Author(s): Abir Arfaoui, Claire Rioualen, Violette Azzoni, Guillaume Pinna, Pascal Finetti, Julien Wicinski, Emmanuelle Josselin, Manon Macario, Rémy Castellano, Candi Léonard-Stumpf, Anthony Bal, Abigaëlle Gros, Sylvain Lossy, Maher Kharrat, Yves Collette, François Bertucci, Daniel Birnbaum, Hayet Douik, Ghislain Bidaut, Emmanuelle Charafe‐Jauffret, Christophe Ginestier
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0044439

Harmony: EEG/MEG Linear Inverse Source Reconstruction in the Anatomical Basis of Spherical Harmonics
Cited by: 20
Author(s): Yury Petrov
Software Mentions: 2
Published: about 12 years ago

10.3390/ijms22168943

ExpressHeart: Web Portal to Visualize Transcriptome Profiles of Non-Cardiomyocyte Cells
Cited by: 3
Author(s): Gang Li, Changfei Luan, Yanhan Dong, Yifang Xie, Scott C Zentz, Rob Zelt, Jeff Roach, Jiandong Liu, Qian Li, Yun Li, Yuchen Yang
Software Mentions: 2
Published: over 3 years ago

10.18632/oncotarget.8437

The GSK3β inhibitor BIS I reverts YAP-dependent EMT signature in PDAC cell lines by decreasing SMADs expression level
Cited by: 17
Author(s): Natthakan Thongon, Ilaria Castiglioni, Chiara Zucal, Elisa Latorre, Vito D’Agostino, Inga Bauer, Michael Pancher, Alberto Ballestrero, Georg Feldmann, Alessio Nencioni, Alessandro Provenzani
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22041629

Cells Lacking PA200 Adapt to Mitochondrial Dysfunction by Enhancing Glycolysis via Distinct Opa1 Processing
Cited by: 2
Author(s): Abdennour Douida, Frank Batista, Pál Botó, Zsolt Regdon, Agnieszka Robaszkiewicz, Krisztina Tar
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms20215338

Juvenile Huntington’s Disease Skin Fibroblasts Respond with Elevated Parkin Level and Increased Proteasome Activity as a Potential Mechanism to Counterbalance the Pathological Consequences of Mutant Huntingtin Protein
Cited by: 13
Author(s): Azzam Aladdin, Róbert Király, Pál Botó, Zsolt Regdon, Krisztina Tar
Software Mentions: 2
Published: about 5 years ago

10.18632/oncotarget.10539

Establishment and antitumor effects of dasatinib and PKI-587 in BD-138T, a patient-derived muscle invasive bladder cancer preclinical platform with concomitant EGFR amplification and PTEN deletion
Cited by: 7
Author(s): Nakho Chang, Hye Won Lee, Ji Hyun Lim, Da Eun Jeong, Hye Jin Song, Sudong Kim, Do‐Hyun Nam, Hyun Hwan Sung, Byong Chang Jeong, Seong Il Seo, Seong Soo Jeon, Hyun Moo Lee, Han-Yong Choi, Hwang Gyun Jeon
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-021-04165-w

SSBER: removing batch effect for single-cell RNA sequencing data
Cited by: 3
Author(s): Yin Zhang, Fei Wang
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0124562

Pluripotent and Metabolic Features of Two Types of Porcine iPSCs Derived from Defined Mouse and Human ES Cell Culture Conditions
Cited by: 30
Author(s): Wei Zhang, Yangli Pei, Zhong Liu, Bingqiang Wen, Suying Cao, Jianyong Han
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.52904

A fully automated high-throughput workflow for 3D-based chemical screening in human midbrain organoids
Cited by: 103
Author(s): Henrik Renner, Martha Grabos, Katharina Becker, Theresa Kagermeier, Jie Wu, Mandy Otto, Stefan Peischard, Dagmar Zeuschner, Yaroslav Tsytsyura, Paul Disse, Jürgen Klingauf, Sebastian A. Leidel, Guiscard Seebohm, Hans R. Schöler, Jan M. Bruder
Software Mentions: 2
Published: about 4 years ago

10.1016/j.jmb.2018.08.019

Ursodeoxycholic Acid Improves Mitochondrial Function and Redistributes Drp1 in Fibroblasts from Patients with Either Sporadic or Familial Alzheimer's Disease
Cited by: 54
Author(s): Simon M Bell, Katy Barnes, Hannah Clemmens, Aziza Alrafiah, Ebtisam A. Al-ofi, Vicki Leech, Oliver Bandmann, Pamela J. Shaw, Daniel Blackburn, Laura Ferraiuolo, Heather Mortiboys
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.58504

Splicing variation of BMP2K balances abundance of COPII assemblies and autophagic degradation in erythroid cells
Cited by: 5
Author(s): Jarosław Cendrowski, Marta Kaczmarek, Michał Mazur, Katarzyna Kuzmicz-Kowalska, Kamil Jastrzębski, Marta Brewinska‐Olchowik, Agata Kominek, Katarzyna Piwocka, Marta Miączyńska
Software Mentions: 2
Published: over 4 years ago

10.1128/mBio.02250-20

Intracellular Staphylococcus aureus Perturbs the Host Cell Ca 2+ Homeostasis To Promote Cell Death
Cited by: 16
Author(s): Kathrin Stelzner, Anderson M. Winkler, Chunguang Liang, Aziza Boyny, Carsten P. Ade, Thomas Dandekar, Martin Fraunholz, Thomas Rudel
Software Mentions: 2
Published: almost 4 years ago

10.1101/2020.10.08.332080

Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data
Cited by: 1
Author(s): Shaoheng Liang, Jun Dou, Ramiz Iqbal, Ken Chen
Software Mentions: 2
Published: about 4 years ago

10.7150/thno.45037

RNA-binding protein NONO contributes to cancer cell growth and confers drug resistance as a theranostic target in TNBC
Cited by: 35
Author(s): Seong‐Jin Kim, Jin-Sung Ju, Myoung Hee Kang, Ji Won Eun, Young Ha Kim, Prahlad Raninga, Kum Kum Khanna, Balázs Györffy, Chan Gi Pack, Hee Dong Han, Hee Jin Lee, Gyungyub Gong, Yong Jae Shin, Gordon B. Mills, Seong‐il Eyun, Yun Yong Park
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41398-019-0535-1

Dystrophin deficiency leads to dysfunctional glutamate clearance in iPSC derived astrocytes
Cited by: 17
Author(s): Abdulsamie Patel, Keimpe Wierda, Lieven Thorrez, Maaike van Putten, De Smedt J, Luís F. Ribeiro, Tine Tricot, Madhavsai K. Gajjar, Robin Duelen, Philip Van Damme, De Waele L, Nathalie Goemans, Tanganyika-de Winter C, Domiziana Costamagna, Annemieke Aartsma‐Rus, van Duyvenvoorde H, Maurilio Sampaolesi, Buyse Gm, Catherine M. Verfaillie
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00028-21

High-Content Imaging to Phenotype Antimicrobial Effects on Individual Bacteria at Scale
Cited by: 14
Author(s): Sushmita Sridhar, Sally Forrest, Ben Warne, Mailis Maes, Stephen Baker, Gordon Dougan, Josefin Bartholdson Scott
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pgen.1006942

A ‘synthetic-sickness’ screen for senescence re-engagement targets in mutant cancer backgrounds
Cited by: 9
Author(s): Claire J. Cairney, Lauren S. Godwin, Alan Bilsland, Sharon Burns, Katrina H. Stevenson, Lynn McGarry, John Revie, Jon D. Moore, Ceri M. Wiggins, R S Collinson, Clare Mudd, Elpida Tsonou, Mahito Sadaie, Dorothy C. Bennett, Masashi Narita, C Torrance, W. Nicol Keith
Software Mentions: 2
Published: over 7 years ago

10.1186/s13046-017-0555-8

High expression of Collagen Triple Helix Repeat Containing 1 (CTHRC1) facilitates progression of oesophageal squamous cell carcinoma through MAPK/MEK/ERK/FRA-1 activation
Cited by: 51
Author(s): Chunni Wang, Zitong Li, Fei Shao, Xueying Yang, Xiaoli Feng, Susheng Shi, Yibo Gao, Jie He
Software Mentions: 2
Published: over 7 years ago

10.3390/s20247030

A Comprehensive Survey on Local Differential Privacy toward Data Statistics and Analysis
Cited by: 36
Author(s): Teng Wang, Xuefeng Zhang, Jingyu Feng, Xinyu Yang
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12864-019-5550-3

Cardiomyogenic differentiation is fine-tuned by differential mRNA association with polysomes
Cited by: 16
Author(s): Isabela Tiemy Pereira, Lucía Spangenberg, Anny Waloski Robert, Rocío Amorín, Marco Augusto Stimamiglio, Hugo Naya, Bruno Dallagiovanna
Software Mentions: 2
Published: over 5 years ago

10.3390/cells9102147

Transmembrane BAX Inhibitor-1 Motif Containing Protein 5 (TMBIM5) Sustains Mitochondrial Structure, Shape, and Function by Impacting the Mitochondrial Protein Synthesis Machinery
Cited by: 12
Author(s): Bruno Seitaj, Felicia Maull, Li Zhang, Verena Wüllner, Christina Wolf, Philipp Schippers, Rita La Rovere, Ute Distler, Stefan Tenzer, Jan B. Parys, Geert Bultynck, Axel Methner
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-93623-9

Similarities and differences between IL11 and IL11RA1 knockout mice for lung fibro-inflammation, fertility and craniosynostosis
Cited by: 22
Author(s): Benjamin Ng, Anissa A. Widjaja, V. Sivakumar, Jinqiao Dong, Sonia Chothani, Si Ching Lim, Shamini Guna Shekeran, Jessie Tan, Narelle E McGregor, Emma C Walker, Natalie A Sims, Sebastian Schäfer, Stuart A. Cook
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-81253-0

Discovery of a new class of integrin antibodies for fibrosis
Cited by: 11
Author(s): Ji Zhang, Tao Wang, Ashmita Saigal, Josephine Johnson, Jennifer Morrisson, Sahba Tabrizifard, Scott A. Hollingsworth, Michael J. Eddins, Wenxian Mao, Kim L. O’Neill, Margarita García‐Calvo, Ester Carballo-Jane, DingGang Liu, Taewon Ham, Qiong Zhou, Weifeng Dong, Hsien-Wei Meng, Jacqueline D. Hicks, Tian-Quan Cai, Taro E. Akiyama, Shirly Pinto, Alan C. Cheng, Thomas J. Greshock, John Marquis, Ren Zhao, Saswata Talukdar, Hussam H. Shaheen, Masahisa Handa
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-75238-8

Characterization of rare spindle and root cell transcriptional profiles in the stria vascularis of the adult mouse cochlea
Cited by: 26
Author(s): Shoujun Gu, Rafal T. Olszewski, Ian Taukulis, Zheng Wei, Daniel Martin, Robert J. Morell, Michael Hoa
Software Mentions: 2
Published: about 4 years ago

10.1016/j.ccell.2019.02.004

DNA Replication Vulnerabilities Render Ovarian Cancer Cells Sensitive to Poly(ADP-Ribose) Glycohydrolase Inhibitors
Cited by: 77
Author(s): Nisha Pillay, Anthony Tighe, Louisa Nelson, Samantha Littler, Camilla Coulson-Gilmer, Nourdine Bah, Anya Golder, Björn Bakker, Diana C. J. Spierings, Dominic I. James, Kate Smith, Allan M. Jordan, Robert D. Morgan, Donald Ogilvie, Floris Foijer, Dean A. Jackson, Stephen S. Taylor
Software Mentions: 2
Published: over 5 years ago

10.1038/s41422-020-00416-2

COPII mitigates ER stress by promoting formation of ER whorls
Cited by: 26
Author(s): Fang Xu, Wanqing Du, Qin Zou, Yuting Wang, Xin Zhang, Xudong Xing, Ying Liu, Dachuan Zhang, Huimin Wang, Wenhao Zhang, Xinyao Hu, Xin Liu, Xiaoling Liu, Shaojin Zhang, Jun Yu, Jau–Shiung Fang, Fajin Li, Ying Zhou, Tieqiang Yue, Na Mi, Haiteng Deng, Peng Zou, Xiao Wei Chen, Xuerui Yang, Li Yu
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-020-71347-6

Quantifying drug tissue biodistribution by integrating high content screening with deep-learning analysis
Cited by: 1
Author(s): Zhuyin Li, Youping Xiao, Peng Jia, Darren Locke, Derek Holmes, Lei Li, Shannon Hamilton, Emma N. Cook, Larnie Myer, Dana E. Vanderwall, Normand J. Cloutier, Akbar M. Siddiqui, Paul C. Whitehead, Richard W. Bishop, Lei Zhao, Mary Ellen Cvijic
Software Mentions: 2
Published: about 4 years ago

10.1186/s13046-019-1314-9

Exosomal transfer of p-STAT3 promotes acquired 5-FU resistance in colorectal cancer cells
Cited by: 78
Author(s): Qian Zhang, Ruixian Liu, Ka-Wo Chan, Jiancong Hu, Jingdan Zhang, Lili Wei, Huiliu Tan, Xiangling Yang, Huanliang Liu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-19024-z

Scaffold-free generation of uniform adipose spheroids for metabolism research and drug discovery
Cited by: 85
Author(s): Aloysius J. Klingelhutz, Françoise A. Gourronc, Anna L Chaly, David Wadkins, Anthony J. Burand, Kathleen R. Markan, Sharon O. Idiga, Meng Wu, Matthew J. Potthoff, James A. Ankrum
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-11370-2

Development of Fluorescent Probes that Target Serotonin 5-HT2B Receptors
Cited by: 15
Author(s): Jhonny Azuaje, Paula Cadaveira López, Alejandro Villamor Iglesias, Rocío Ailim de la Fuente, José M. Pérez-Rubio, Davinia Moreno, Tomasz Maciej Stępniewski, Xerardo García‐Mera, José Brea, Jana Selent, Dolores Péréz, Marián Castro, Marı́a Isabel Loza, Eddy Sotelo
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-30713-1

Unraveling the Plasmodium vivax sporozoite transcriptional journey from mosquito vector to human host
Cited by: 37
Author(s): Alison Roth, Swamy Rakesh Adapa, Min Zhang, Xiangyun Liao, Vishal Saxena, Raaven Goffe, Suzanne Li, Ratawan Ubalee, Gagandeep Singh Saggu, Zarna Rajeshkumar Pala, Shilpi Garg, Silas A. Davidson, Rays H. Y. Jiang, John H. Adams
Software Mentions: 2
Published: over 6 years ago

10.1038/srep34785

Single cell dynamic phenotyping
Cited by: 16
Author(s): Katherin Patsch, Charles B. Chiu, Mark Engeln, David B. Agus, Parag Mallick, Shannon M. Mumenthaler, Daniel Ruderman
Software Mentions: 2
Published: about 8 years ago

10.1016/j.celrep.2018.03.021

Extracellular Monomeric and Aggregated Tau Efficiently Enter Human Neurons through Overlapping but Distinct Pathways
Cited by: 143
Author(s): Lewis Evans, Thomas Wassmer, Graham Fraser, James Smith, Michael S. Perkinton, Andrew Billinton, Frederick J. Livesey
Software Mentions: 2
Published: over 6 years ago

10.1038/srep29752

A high-content image-based method for quantitatively studying context-dependent cell population dynamics
Cited by: 48
Author(s): Colleen M. Garvey, Erin Spiller, Danika Lindsay, Chun-Te Chiang, Nathan C. Choi, David B. Agus, Parag Mallick, Jasmine Foo, Shannon M. Mumenthaler
Software Mentions: 2
Published: over 8 years ago

10.1038/srep41597

Modulated DISP3/PTCHD2 expression influences neural stem cell fate decisions
Cited by: 16
Author(s): Jana Konířová, Jana Oltová, Alicia Corlett, Justyna Kopycińska, Michal Kolář, Petr Bartůněk, Martina Zı́ková
Software Mentions: 2
Published: almost 8 years ago

10.1126/sciadv.abi8787

Optogenetic modeling of human neuromuscular circuits in Duchenne muscular dystrophy with CRISPR and pharmacological corrections
Cited by: 14
Author(s): Amaia Paredes‐Redondo, Peter Harley, Eleni Maniati, David Ryan, Sandra Louzada, Jinhong Meng, Anna Kowala, Beiyuan Fu, Fengtang Yang, Pengtao Liu, Silvia Marino, Olivier Pourquié, Francesco Muntoni, Jun Wang, Ivo Lieberam, Yung‐Yao Lin
Software Mentions: 2
Published: about 3 years ago

10.1016/j.cmet.2019.12.012

Calcitonin Receptor Neurons in the Mouse Nucleus Tractus Solitarius Control Energy Balance via the Non-aversive Suppression of Feeding
Cited by: 63
Author(s): Wenwen Cheng, Ian E. Gonzalez, Warren Pan, Anthony H. Tsang, Jeffrey Adams, Ermelinda Ndoka, Desiree Gordian, Basma Khoury, Karen J. Roelofs, Simon S. Evers, Andrew MacKinnon, Shuangcheng Wu, Henriette Frikke-Schmidt, Jonathan N. Flak, James L. Trevaskis, Christopher J. Rhodes, So‐ichiro Fukada, Randy J. Seeley, Darleen A. Sandoval, David P. Olson, Clémence Blouet, Martin G. Myers
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41597-019-0351-8

Single-cell RNA sequencing of human kidney
Cited by: 133
Author(s): Jinling Liao, Zhenyuan Yu, Chen Yang, Mengying Bao, Chunlin Zou, Haiying Zhang, Deyun Liu, Tianyu Li, Qingyun Zhang, Jiaping Li, Jian Cheng, Zengnan Mo
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41420-021-00542-9

Determination of the dynamic cellular transcriptional profiles during kidney development from birth to maturity in rats by single-cell RNA sequencing
Cited by: 6
Author(s): Fangrui Ding, Xiuying Tian, Jiali Mo, Botao Wang, Jun Zheng
Software Mentions: 2
Published: over 3 years ago

10.3390/antiox10060831

Glucose-Impaired Corneal Re-Epithelialization Is Promoted by a Novel Derivate of Dimethyl Fumarate
Cited by: 5
Author(s): Giovanni Giurdanella, Anna Longo, Loredana Salerno, Giuseppe Romeo, Sebastiano Intagliata, Gabriella Lupo, Alfio Distefano, Chiara Bianca Maria Platania, Claudio Bucolo, Giovanni Li Volti, Carmelina Daniela Anfuso, Valeria Pittalà
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-34301-1

Oxytetracycline have the therapeutic efficiency in CD133+ HCC population through suppression CD133 expression by decreasing of protein stability of CD133
Cited by: 18
Author(s): Yeonhwa Song, InKi Kim, Inhee Choi, Se-Hyuk Kim, Haeng Ran Seo
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1009400

Monocyte subset redistribution from blood to kidneys in patients with Puumala virus caused hemorrhagic fever with renal syndrome
Cited by: 11
Author(s): Sindhu Vangeti, Tomas Strandin, Sang Liu, Johanna Tauriainen, Anne Räisänen-Sokolowski, Luz E. Cabrera, Antti Hassinen, Satu Mäkelä, Jukka Mustonen, Antti Vaheri, Olli Vapalahti, Jonas Klingström, Anna Smed‐Sörensen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.ppat.1009874

Intracellular Staphylococcus aureus employs the cysteine protease staphopain A to induce host cell death in epithelial cells
Cited by: 16
Author(s): Kathrin Stelzner, Aziza Boyny, Tobias Hertlein, Aneta Sroka, Adriana Moldovan, Kerstin Paprotka, David Komla Kessie, Helene Mehling, Jan Potempa, Knut Ohlsen, Martin Fraunholz, Thomas Rudel
Software Mentions: 2
Published: about 3 years ago

10.1038/s41419-021-03497-y

Mutant p53 promotes RCP-dependent chemoresistance coinciding with increased delivery of P-glycoprotein to the plasma membrane
Cited by: 11
Author(s): Vinaya Phatak, Yannick von Grabowiecki, Justyna Janus, Leah Officer, Caron Behan, Lydia Aschauer, Lucia Pinòn, Hannah L. Mackay, Sara Zanivan, Jim C. Norman, Michael Kelly, John Le Quesne, Patricia Müller
Software Mentions: 2
Published: over 3 years ago

10.1016/j.redox.2019.101182

A Golgi-associated redox switch regulates catalytic activation and cooperative functioning of ST6Gal-I with B4GalT-I
Cited by: 22
Author(s): Antti Hassinen, Fawzi Khoder-Agha, Elham Khosrowabadi, Daniela Mennerich, Déborah Harrus, Maxence Noël, Elitsa Y. Dimova, Tuomo Glumoff, Anne Harduin-Lepers, Thomas Kietzmann, Sakari Kellokumpu
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers12020456

An Epitope on EGFR Loading Catastrophic Internalization Serve as a Novel Oncotarget for Hepatocellular Carcinoma Therapy
Cited by: 0
Author(s): Dianshuai Huang, Qingjie Fan, Zhiyi Liu, Shuqin Zhang, Wei Huang, Hongrui Li, Chaozhao Liang, Fenyong Sun
Software Mentions: 2
Published: almost 5 years ago

10.1186/s13073-020-00733-6

Transcriptome analysis and functional characterization of cerebral organoids in bipolar disorder
Cited by: 55
Author(s): Annie Kathuria, Kara Lopez-Lengowski, Magdalena Vater, Donna L. McPhie, Bruce M. Cohen, Rakesh Karmacharya
Software Mentions: 2
Published: over 4 years ago

10.1038/s41419-020-2535-8

The novel miR-1269b-regulated protein SVEP1 induces hepatocellular carcinoma proliferation and metastasis likely through the PI3K/Akt pathway
Cited by: 24
Author(s): Lu Chen, Dongming Liu, Xianfu Yi, Lisha Qi, Xiangdong Tian, Bo Sun, Qiuping Dong, Zhiqiang Han, Qiang Li, Tianqiang Song, Mingxi Guo, Wei Zhang, Hua Guo, Ti Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12885-015-1791-y

TrkA is amplified in malignant melanoma patients and induces an anti-proliferative response in cell lines
Cited by: 17
Author(s): Luigi Pasini, Angela Re, Toma Tebaldi, Gianluca Ricci, Sebastiana Boi, Valentina Adami, Mattia Barbareschi, Alessandro Quattrone
Software Mentions: 2
Published: about 9 years ago

10.1186/s13073-021-00881-3

IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation
Cited by: 107
Author(s): Fan Zhang, Joseph Mears, Lorien Shakib, Jessica I. Beynor, Sara Shanaj, Ilya Korsunsky, Aparna Nathan, Laura T. Donlin, Soumya Raychaudhuri
Software Mentions: 2
Published: over 3 years ago

10.3389/fphar.2017.00433

Phenotypic Screening Identifies Synergistically Acting Natural Product Enhancing the Performance of Biomaterial Based Wound Healing
Cited by: 1
Author(s): Sivasubramanian Srinivasan, Gayathri Chandrasekar, Sara Svensson Akusjärvi, Ramar Thangam, Malairaj Sathuvan, Rajesh Kumar, Hawraa Hussein, Vincent Savariar, Balaraman Madhan, Palani Gunasekaran, Satish Srinivas Kitambi
Software Mentions: 2
Published: over 7 years ago

10.3389/fnmol.2018.00277

Generation of iPSC-Derived Human Peripheral Sensory Neurons Releasing Substance P Elicited by TRPV1 Agonists
Cited by: 29
Author(s): Marília Zaluar P. Guimarães, Rodrigo De Vecchi, Gabriela Vitória, Jaroslaw Sochacki, Bruna S. Paulsen, Igor Lima, Felipe Rodrigues da Silva, Rosa Maria Esteves Moreira da Costa, Newton G. Castro, Lionel Breton, Stevens K. Rehen
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2017.00627

Measuring Leukocyte Adhesion to (Primary) Endothelial Cells after Photon and Charged Particle Exposure with a Dedicated Laminar Flow Chamber
Cited by: 11
Author(s): N. Erbeldinger, Felicitas Rapp, Svetlana Ktitareva, Philipp Wendel, Anna S. Bothe, Till Dettmering, Marco Durante, Thomas Friedrich, Bianca Bertulat, Steven De Meyer, M. C. Cardoso, Stephanie Hehlgans, Franz Rödel, Claudia Fournier
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2018.03174

Nitration of Wheat Amylase Trypsin Inhibitors Increases Their Innate and Adaptive Immunostimulatory Potential in vitro
Cited by: 22
Author(s): Kira Ziegler, J Neumann, Fobang Liu, Janine Fröhlich‐Nowoisky, Christoph Cremer, Joachim Saloga, Kathrin Reinmuth-Selzle, Ulrich Pöschl, Detlef Schuppan, Iris Bellinghausen, Kurt Lucas
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.sjbs.2021.02.073

Partial purification and characterization of 2, 4-diacetylphloroglucinol producing Pseudomonas fluorescens VSMKU3054 against bacterial wilt disease of tomato
Cited by: 11
Author(s): Perumal Suresh, Govintharaj Varathraju, Vellasamy Shanmugaiah, Khalid S. Almaary, Yahya B. Elbadawi, Ayman Mubarak
Software Mentions: 2
Published: over 3 years ago

10.3389/fimmu.2021.645988

A Partial Picture of the Single-Cell Transcriptomics of Human IgA Nephropathy
Cited by: 26
Author(s): Rong Tang, Ting Meng, Wei Lin, Cong Shen, Joshua D. Ooi, Peter J. Eggenhuizen, Peng Jin, Xiang Ding, Jinbiao Chen, Yangshuo Tang, Zhou Xiao, Xiang Ao, Weilin Peng, Qiaoling Zhou, Ping Xiao, Yong Zhong, Xiangcheng Xiao
Software Mentions: 2
Published: over 3 years ago

10.3389/fmolb.2021.658906

Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl
Cited by: 5
Author(s): Tülay Karakulak, Ahmet Süreyya Rifaioğlu, João P. G. L. M. Rodrigues, Ezgi Karaca
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-020-06843-0

Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms
Cited by: 21
Author(s): Austin N. Southard-Smith, Alan J. Simmons, Bob Chen, Angela L. Jones, Marisol A. Ramirez Solano, Paige N. Vega, Cherie’ R. Scurrah, Yue Zhao, Michael J. Brenan, Jiekun Xuan, Martha J. Shrubsole, Ely Porter, Xi Chen, Colin J. H. Brenan, Qi Liu, Lauren N. M. Quigley, Ken S. Lau
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0199740

Potential involvement of neutrophils in human thyroid cancer
Cited by: 45
Author(s): Maria Rosaria Galdiero, Gilda Varricchi, Stefania Loffredo, Claudio Bellevicine, Tiziana Lansione, Anne Lise Ferrara, Raffaella Iannone, Sarah Di Somma, Francesco Borriello, Eduardo Clery, Maria Triassi, Giancarlo Troncone, Gianni Marone
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2020.558324

Betulinic Acid Exerts Cytoprotective Activity on Zika Virus-Infected Neural Progenitor Cells
Cited by: 15
Author(s): Bruno Raphael Ribeiro Cavalcante, Luciana Souza de Aragão-França, Gabriela Louise de Almeida Sampaio, Carolina Kymie Vasques Nonaka, Moisés S Oliveira, Gúbio Soares Campos, Sílvia Inês Sardi, Beatriz Rocha Simões Dias, Juliana Perrone Bezerra de Menezes, Vinícius Pinto Costa Rocha, Erik Aranha Rossi, Bruno Diaz Paredes, Gabriele Louise Soares Martins, Kyan James Allahdadi, Laisla Rangel Peixoto, José Maria Barbosa-Filho
Software Mentions: 2
Published: about 4 years ago

10.1038/cr.2017.36

Baf60b-mediated ATM-p53 activation blocks cell identity conversion by sensing chromatin opening
Cited by: 18
Author(s): Shuyi Ji, Linying Zhu, Yimeng Gao, Xiaoran Zhang, Yupeng Yan, Jin Cen, Rongxia Li, Rong Zeng, Lujian Liao, Chaoqi Hou, Yawei Gao, Shaorong Gao, Gang Wei, Lijian Hui
Software Mentions: 2
Published: over 7 years ago

10.3389/fcell.2021.662903

Genetic Defects in DNAH2 Underlie Male Infertility With Multiple Morphological Abnormalities of the Sperm Flagella in Humans and Mice
Cited by: 16
Author(s): Jae Yeon Hwang, Shoaib Nawaz, Jungmin Choi, Huafeng Wang, Shabir Hussain, Mehboob Nawaz, Francesc López-Giráldez, Kyungjo Jeong, Weilai Dong, Jong Nam Oh, Kaya Bilgüvar, Shrikant Mane, Chang Kyu Lee, Christopher Bystroff, Richard P. Lifton, Wasim Ahmad, Jin‐Ho Chung
Software Mentions: 2
Published: over 3 years ago

10.3389/fncel.2020.592005

Organotypic Brain Slice Culture Microglia Exhibit Molecular Similarity to Acutely-Isolated Adult Microglia and Provide a Platform to Study Neuroinflammation
Cited by: 27
Author(s): Alex R. D. Delbridge, Dann Huh, Margot Brickelmaier, Jeremy C. Burns, Chris Roberts, Ravi Challa, Naideline Raymond, Patrick Cullen, Thomas M. Carlile, Katelin A. Ennis, Mei Liu, Chao Sun, Norm Allaire, Marianna Foos, Hui-Hsin Tsai, Nathalie Franchimont, Richard M. Ransohoff, Cherié Butts, Michaël Mingueneau
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00330-017-4755-6

A simple classification system (the Tree flowchart) for breast MRI can reduce the number of unnecessary biopsies in MRI-only lesions
Cited by: 55
Author(s): Ramona Woitek, Claudio Spick, Melanie Schernthaner, Margaretha Rudas, Panagiotis Kapetas, Maria Bernathova, Julia Furtner, Katja Pinker, Thomas H. Helbich, Pascal Baltzer
Software Mentions: 2
Published: over 7 years ago

10.1016/j.actbio.2018.12.003

Micro-scaled topographies direct differentiation of human epidermal stem cells
Cited by: 17
Author(s): Sebastiaan Zijl, Aliaksei Vasilevich, Priyalakshmi Viswanathan, Ayelen Luna Helling, Nick R. M. Beijer, Gernot Walko, Ciro Chiappini, Jan de Boer, Fiona M. Watt
Software Mentions: 2
Published: almost 6 years ago

10.15252/emmm.202013579

High‐throughput screening identifies suppressors of mitochondrial fragmentation in OPA1 fibroblasts
Cited by: 24
Author(s): Emma Cretin, Priscilla Lopes, Elodie Vimont, Takashi Tatsuta, Thomas Langer, Anastasia D. Gazi, Martin Sachse, Patrick Yu‐Wai‐Man, Pascal Reynier, Timothy Wai
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0159716

Targeting Tumor Cells with Anti-CD44 Antibody Triggers Macrophage-Mediated Immune Modulatory Effects in a Cancer Xenograft Model
Cited by: 16
Author(s): Daniela Maisel, Fabian Birzele, Edgar Voß, Adam Nopora, Sabine Bader, Thomas Friess, Bernhard Göller, Daphna Laifenfeld, Stefan Weigand, Valeria Runza
Software Mentions: 2
Published: over 8 years ago

10.1242/dev.199611

MOrgAna: accessible quantitative analysis of organoids with machine learning
Cited by: 19
Author(s): Nicola Gritti, Jia Le Lim, Kerim Anlaş, Mallica Pandya, Germaine Aalderink, Guillermo Martínez-Ara, Vikas Trivedi
Software Mentions: 2
Published: about 3 years ago

10.15252/embj.2020104419

Cyclin A triggers Mitosis either via the Greatwall kinase pathway or Cyclin B
Cited by: 47
Author(s): Nadia Hégarat, Adrijana Crncec, Maria F. Suarez Peredo Rodriguez, Fabio Echegaray Iturra, Yan Gu, Oliver Busby, Paul Lang, Alexis R. Barr, Chris Bakal, Masato T. Kanemaki, Angus I. Lamond, Béla Novák, Tony Ly, Helfrid Hochegger
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-021-04334-x

A novel automated image analysis pipeline for quantifying morphological changes to the endoplasmic reticulum in cultured human cells
Cited by: 2
Author(s): M. Elena Garcia-Pardo, Jeremy C. Simpson, Niamh C. O’Sullivan
Software Mentions: 2
Published: about 3 years ago

10.3390/mps2040083

High-Throughput Phenotyping Toolkit for Characterizing Cellular Models of Hypertrophic Cardiomyopathy in Vitro
Cited by: 7
Author(s): Diogo Mosqueira, Katarzyna Lis-Slimak, Chris Denning
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0207639

Privacy-preserving aggregation of personal health data streams
Cited by: 32
Author(s): Jong Wook Kim, Beakcheol Jang, Hoon Yoo
Software Mentions: 2
Published: almost 6 years ago

10.3390/cells9040920

scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells
Cited by: 441
Author(s): Zhengpin Wang, Xiaojiang Xu
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-02099-w

Cryptic developmental events determine medulloblastoma radiosensitivity and cellular heterogeneity without altering transcriptomic profile
Cited by: 10
Author(s): Daniel Malawsky, Seth Weir, Jennifer K. Ocasio, Benjamin Babcock, Taylor Dismuke, Abigail H. Cleveland, Andrew M. Donson, Rajeev Vibhakar, Kirk C. Wilhelmsen, Timothy R. Gershon
Software Mentions: 2
Published: over 3 years ago

Projects: pypi: Harmony

Papers Mentioning Harmony 504