pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.3390/plants9020240

Genome-Wide Analysis of Gene Expression Provides New Insights into Waterlogging Responses in Barley (Hordeum vulgare L.)
Cited by: 38
Author(s): Ana Borrego-Benjumea, Adam Carter, James R. Tucker, Zhen Yao, Wayne Xu, Ana Badea
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-72482-w

Coordinated analysis of exon and intron data reveals novel differential gene expression changes
Cited by: 5
Author(s): Hamid R. Eghbalnia, William W. Wilfinger, Karol Mackey, Piotr Chomczyński
Software Mentions: 1
Published: almost 6 years ago

10.3390/plants9121710

Engineered Ripening-Specific Accumulation of Polyamines Spermidine and Spermine in Tomato Fruit Upregulates Clustered C/D Box snoRNA Gene Transcripts in Concert with Ribosomal RNA Biogenesis in the Red Ripe Fruit
Cited by: 5
Author(s): Vijaya Shukla, Tahira Fatima, Ravinder K. Goyal, Avtar K. Handa, Autar K. Mattoo
Software Mentions: 1
Published: almost 6 years ago

10.3390/plants9040488

Triacontanol Promotes the Fruit Development and Retards Fruit Senescence in Strawberry: A Transcriptome Analysis
Cited by: 12
Author(s): Qi Pang, Xueqin Chen, Jinhua Lv, Teng Li, Jinggui Fang, Haifeng Jia
Software Mentions: 1
Published: over 6 years ago

10.3390/plants7020035

Seed Dormancy Involves a Transcriptional Program That Supports Early Plastid Functionality during Imbibition
Cited by: 14
Author(s): Alberto Gianinetti, Franca Finocchiaro, Paolo Bagnaresi, Antonella Zechini, Primetta Faccioli, Luigi Cattivelli, Giampiero Valè, Chiara Biselli
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.5997

Analyses of long non-coding RNA and mRNA profiling in the spleen of diarrheic piglets caused by Clostridium perfringens type C
Cited by: 11
Author(s): Zunqiang Yan, Xiaoyu Huang, Weibo Sun, Qiaoli Yang, Hairen Shi, Tiantuan Jiang, Shenggui Li, Pengfei Wang, Shuangbao Gun
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-020-77541-w

Physiological and molecular correlates of the screwworm fly attraction to wound and animal odors
Cited by: 3
Author(s): Paul V. Hickner, Omprakash Mittapalli, Anjana Subramoniam, Agustin Sagel, Wes Watson, Maxwell J. Scott, Alex P. Arp, Adalberto A Pérez de León, Zainulabeuddin Syed
Software Mentions: 1
Published: almost 6 years ago

10.1002/pld3.282

Structure‐function analysis of the maize bulliform cell cuticle and its potential role in dehydration and leaf rolling
Cited by: 21
Author(s): Susanne Matschi, Miguel Vasquez, Richard Bourgault, Paul Steinbach, James Chamness, Nicholas Kaczmar, Michael A. Gore, Isabel Molina, Laurie G. Smith
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-77993-0

Elucidating the regulatory mechanism of Swi1 prion in global transcription and stress responses
Cited by: 5
Author(s): Zhiqiang Du, Jeniece Regan, Elizabeth T. Bartom, Wei Wu, Li Zhang, Dustin K. Goncharoff, Liming Li
Software Mentions: 1
Published: almost 6 years ago

10.1111/pbi.13190

Gb<scp>CYP</scp>86A1‐1 from Gossypium barbadense positively regulates defence against Verticillium dahliae by cell wall modification and activation of immune pathways
Cited by: 30
Author(s): Guilin Wang, Jingying Xu, Lechen Li, Zhan Guo, Qingxin Si, Guozhong Zhu, Xinyu Wang, Wangzhen Guo
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-021-81834-z

Integrative analysis of transcriptomic data for identification of T-cell activation-related mRNA signatures indicative of preterm birth
Cited by: 3
Author(s): Jae Young Yoo, Do Young Hyeon, Yourae Shin, Soo Min Kim, Young Ah You, Da Ye Kim, Daehee Hwang, Young Ju Kim
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83662-7

A bladder cancer patient-derived xenograft displays aggressive growth dynamics in vivo and in organoid culture
Cited by: 11
Author(s): Elise Y. Cai, José Manuel Pérez García, Yuzhen Liu, Funda Vakar-López, Sonali Arora, Holly M. Nguyen, Bryce Lakely, Lisha G. Brown, Alicia Yoke Wei Wong, Bruce Montgomery, John K. Lee, Eva Corey, Jonathan L. Wright, Andrew C. Hsieh, Hung‐Ming Lam
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-020-4004-8

Oncomelania hupensis retains its ability to transmit Schistosoma japonicum 13 years after migration from permissive to non-permissive areas
Cited by: 3
Author(s): Chengsong Sun, Fang Luo, Xin Liu, Feng Miao, Wei Hu
Software Mentions: 1
Published: over 6 years ago

10.14814/phy2.14832

A hierarchical dynamic model used for investigating feed efficiency and its relationship with hepatic gene expression in APOE*3‐Leiden.CETP mice
Cited by: 2
Author(s): Xiang Zhang, Yared Paalvast, Yanan Wang, Patrick C.N. Rensen, Albert K. Groen
Software Mentions: 1
Published: over 5 years ago

10.3390/pharmaceutics13040510

Pre-Emptive Priming of Human Skin Improves Cutaneous Scarring and Is Superior to Immediate and Delayed Topical Anti-Scarring Treatment Post-Wounding: A Double-Blind Randomised Placebo-Controlled Clinical Trial
Cited by: 16
Author(s): Sarir Uddin, Traci A. Wilgus, D.D. McGeorge, Ardeshir Bayat
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.11567

Vibrio alginolyticus influences quorum sensing-controlled phenotypes of acute hepatopancreatic necrosis disease-causing Vibrio parahaemolyticus
Cited by: 9
Author(s): Panida Paopradit, Natta Tansila, Komwit Surachat, Pimonsri Mittraparp‐arthorn
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-91112-7

DC-SIGN binding to mannosylated B-cell receptors in follicular lymphoma down-modulates receptor signaling capacity
Cited by: 4
Author(s): Beatriz Valle-Argos, Giorgia Chiodin, Dean Bryant, Joe Taylor, Elizabeth Lemm, Patrick J. Duriez, Philip Rock, Jonathan C. Strefford, Francesco Forconi, Richard Burack, Graham Packham, Freda K. Stevenson
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-92128-9

Establishment of liver tumor cell lines from atherogenic and high fat diet fed hepatitis C virus transgenic mice
Cited by: 1
Author(s): Takayoshi Shirasaki, Kazuhisa Murai, Masao Honda, Hikari Okada, Yuika Innami, Atsumu Yamada, Tetsuro Shimakami, Kazunori Kawaguchi, Taro Yamashita, Yoshio Sakai
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-92515-2

Impairing flow-mediated endothelial remodeling reduces extravasation of tumor cells
Cited by: 12
Author(s): Gautier Follain, Naël Osmani, Valentin Gensbittel, Nandini Asokan, Annabel Larnicol, Luc Mercier, Maria Jesus Garcia‐Leon, Ignacio Busnelli, Angélique Pichot, Nicodème Paul, Raphaël Carapito, Seiamak Bahram, Olivier Lefèbvre, Jacky G. Goetz
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-93506-z

Effects of long-term norepinephrine treatment on normal immortalized ovarian and fallopian tube cells
Cited by: 1
Author(s): Sweta Dash, Sean Yoder, Tania Mesa, Andrew T. Smith, Ling Cen, Steven A. Eschrich, Guillermo N. Armaiz-Peña, Alvaro N.A. Monteiro
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-93904-3

Single cell RNA-seq reveals genes vital to in vitro fertilized embryos and parthenotes in pigs
Cited by: 14
Author(s): Zhiqiang Du, Hao Liang, Xiaoman Liu, Yunhua Liu, Chonglong Wang, Yang Ch
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-96902-7

Early phase of effective treatment induces distinct transcriptional changes in Mycobacterium tuberculosis expelled by pulmonary tuberculosis patients
Cited by: 1
Author(s): Ambreen Shaikh, Kalpana Sriraman, Smriti Vaswani, Vikas Oswal, Sudha Rao, Nerges Mistry
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.6519

Transcriptome analysis of osmotic-responsive genes in ABA-dependent and -independent pathways in wheat (Triticum aestivum L.) roots
Cited by: 15
Author(s): Chunxi Li, Wenli Zhang, Meng Yuan, Lina Jiang, Bo Sun, Daijing Zhang, Yun Shao, Anqi Liu, Xueqing Liu, Jianhui Ma
Software Mentions: 1
Published: over 7 years ago

10.1155/2018/9194362

The Effects of Radix Astragali Water Abstract on Energy Metabolism in Rat Yang-Deficiency Cold Syndrome Model through PPAR Signaling Pathway
Cited by: 9
Author(s): Wanchen Yu, Haijun Zhao, Xin Zong, Xuming Ji, Xiao Han, Yanfang Wang, Yanan Zhang, Ke Ma, Ning Cui, Shijun Wang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13227-018-0111-4

A two-level model for the role of complex and young genes in the formation of organism complexity and new insights into the relationship between evolution and development
Cited by: 10
Author(s): Dong Yang, Aotian Xu, Pan Shen, Chao Gao, Jiayin Zang, Chen Qiu, Hongsheng Ouyang, Ying Jiang, Fuchu He
Software Mentions: 1
Published: almost 8 years ago

10.1186/1756-8935-8-9

Altering cancer transcriptomes using epigenomic inhibitors
Cited by: 28
Author(s): Malaina Gaddis, Diana L. Gerrard, Seth Frietze, Peggy J. Farnham
Software Mentions: 1
Published: over 11 years ago

10.12688/f1000research.8290.2

dbVar structural variant cluster set for data analysis and variant comparison
Cited by: 11
Author(s): Lon Phan, Jeffrey Hsu, Le Quang Minh Tri, Michaela Willi, Tamer Mansour, Yan Kai, John Garner, John Lopez, Ben Busby
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.10953

Photoperiod induced the pituitary differential regulation of lncRNAs and mRNAs related to reproduction in sheep
Cited by: 13
Author(s): Xiaoyun He, Tao Lin, Yingjie Zhong, Ran Di, Qing Xia, Xiangyu Wang, Xiaofei Guo, Shangquan Gan, Xiaosheng Zhang, Jinlong Zhang, Qiuyue Liu, Mingxing Chu
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms160511398

Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress
Cited by: 65
Author(s): Bin Bai, Jun Wu, Wentao Sheng, Bo Zhou, Lean Zhou, Wen Zhuang, Dongping Yao, Qipan Deng
Software Mentions: 1
Published: over 11 years ago

10.1186/2045-8118-10-25

Developmental changes in the transcriptome of the rat choroid plexus in relation to neuroprotection
Cited by: 65
Author(s): Ingrid Kratzer, Shane A. Liddelow, NR Saunders, Katarzyna Dziegielewska, Nathalie Strazielle, Jean-François Ghersi-Egea
Software Mentions: 1
Published: about 13 years ago

10.3389/fnagi.2020.00256

Transcriptome Analyses in BV2 Microglial Cells Following Treatment With Amino-Terminal Fragments of Apolipoprotein E
Cited by: 9
Author(s): Tanner B Pollock, Giovan N. Cholico, Noail F Isho, Ryan Day, Tarun Suresh, Erica S. Stewart, Madyson M McCarthy, Troy T. Rohn
Software Mentions: 1
Published: about 6 years ago

10.3389/fbioe.2020.00157

Gossypium hirsutum Salt Tolerance Is Enhanced by Overexpression of G. arboreum JAZ1
Cited by: 18
Author(s): Ge Zhao, Yun Song, Qianhua Wang, Dongxia Yao, Dongliang Li, Wenqiang Qin, Xiaoyang Ge, Zuoren Yang, Wenying Xu, Zhen Su, Xueyan Zhang, Fuguang Li, Jiahe Wu
Software Mentions: 1
Published: over 6 years ago

10.1210/en.2016-1929

Genome-Wide Identification of Basic Helix–Loop–Helix and NF-1 Motifs Underlying GR Binding Sites in Male Rat Hippocampus
Cited by: 23
Author(s): John R. Pooley, Benjamin P. Flynn, Lars Grøntved, Songjoon Baek, Michael J. Guertin, Yvonne M. Kershaw, Matthew T. Birnie, A. Pellatt, Caroline A Rivers, R. Louis Schiltz, Gordon L. Hager, Stafford L. Lightman, Becky Conway-Campbell
Software Mentions: 1
Published: over 9 years ago

10.3389/fcvm.2021.627380

Transcriptome and N6-Methyladenosine RNA Methylome Analyses in Aortic Dissection and Normal Human Aorta
Cited by: 11
Author(s): Xianwu Zhou, Zerui Chen, Jianrong Zhou, Yaorong Liu, Ruixin Fan, Tucheng Sun
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.554984

The Bone-Forming Properties of Periosteum-Derived Cells Differ Between Harvest Sites
Cited by: 18
Author(s): Lisanne C. Groeneveldt, Tim Herpelinck, Marina Maréchal, Constantinus Politis, Wilfred F. J. van IJcken, Danny Huylebroeck, Liesbet Geris, Eskeatnaf Mulugeta, Frank P. Luyten
Software Mentions: 1
Published: almost 6 years ago

10.15252/embr.201845766

<scp>FET</scp> family fusion oncoproteins target the <scp>SWI</scp> / <scp>SNF</scp> chromatin remodeling complex
Cited by: 47
Author(s): Malin Lindén, Christer Thomsen, Pernilla Grundevik, Emma Jonasson, Daniel Andersson, Rikard Runnberg, Soheila Dolatabadi, Christoffer Vannas, Manuel Luna Santamaría, Henrik Fagman, Anders Ståhlberg, Pierre Åman
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2021.685741

Comprehensive Analysis of Peripheral Exosomal circRNAs in Large Artery Atherosclerotic Stroke
Cited by: 12
Author(s): Qi Xiao, Ruihua Yin, Yuan Wang, Shaonan Yang, Aijun Ma, Xudong Pan, Xiaoyan Zhu
Software Mentions: 1
Published: about 5 years ago

10.15252/embr.201642540

Loss of Nat4 and its associated histone H4 N‐terminal acetylation mediates calorie restriction‐induced longevity
Cited by: 37
Author(s): Diego Molina‐Serrano, Vassia Schiza, Christis Demosthenous, Emmanouil Stavrou, Jan Oppelt, Dimitris Kyriakou, Wei Liu, Gertrude Zisser, Helmut Bergler, Weiwei Dang, Antonis Kirmizis
Software Mentions: 1
Published: almost 10 years ago

10.15252/emmm.201607315

<scp>MG</scp>132‐induced progerin clearance is mediated by autophagy activation and splicing regulation
Cited by: 86
Author(s): Karim Harhouri, Claire Navarro, Danielle Depetris, Marie‐Geneviève Matteï, Xavier Nissan, Pierre Cau, Annachiara De Sandre‐Giovannoli, Nicolas Lévy
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18092017

Comprehensive Evaluation of TFF3 Promoter Hypomethylation and Molecular Biomarker Potential for Prostate Cancer Diagnosis and Prognosis
Cited by: 13
Author(s): Maibritt Nørgaard, Christa Haldrup, Tine Maj Storebjerg, Else Marie Vestergaard, Peter J. Wild, Søren Høyer, Michael Borre, Torben F. Ørntoft, Karina D. Sørensen
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0172044

Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development
Cited by: 45
Author(s): S. Radhakrishnan, Robert Literman, Jennifer L. Neuwald, Andrew J. Severin, Nicole Valenzuela
Software Mentions: 1
Published: over 9 years ago

10.3389/fcimb.2020.00428

Legionella pneumophila Infection Rewires the Acanthamoeba castellanii Transcriptome, Highlighting a Class of Sirtuin Genes
Cited by: 12
Author(s): Pengfei Li, Dane Vassiliadis, Sze Ying Ong, Vicki Bennett-Wood, Chihiro Sugimoto, Junya Yamagishi, Elizabeth L. Hartland, Shivani Pasricha
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2019.00363

Staphylococcus aureus Small Colony Variants (SCVs): News From a Chronic Prosthetic Joint Infection
Cited by: 57
Author(s): Guilherme Loss, Patrícia Martins Simões, Florent Valour, Marina Farrel Cortês, Luiz Gonzaga, Marine Bergot, Sophie Trouillet‐Assant, Jérôme Josse, Alan Diot, Emiliano P. Ricci, Ana Tereza Ribeiro de Vasconcelos, Frédéric Laurent
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2020.00219

Whole Genome and Transcriptome Sequencing of Two Multi-Drug Resistant Mycobacterium tuberculosis Strains to Facilitate Illustrating Their Virulence in vivo
Cited by: 7
Author(s): Jun Tang, Zhihao Liu, Yanan Shi, Zhan Li, Chuan Qin
Software Mentions: 1
Published: over 6 years ago

10.3389/fcimb.2020.00203

Potent Tetrahydroquinolone Eliminates Apicomplexan Parasites
Cited by: 19
Author(s): Martin J. McPhillie, Ying Zhou, Mark Hickman, James A. Gordon, Christopher Weber, Qigui Li, Patricia Lee, K. Amporndanai, Rachel M. Johnson, Heather Darby, Stuart Woods, Zhu Hong Li, Richard S. Priestley, Kurt D. Ristroph, Scott B. Biering, Kamal El Bissati, Seungmin Hwang, Farida Hakim, Sarah Dovgin, Joseph Lykins, Lucy R. Roberts, Kerrie E Hargrave, Hua Cong, Anthony P. Sinai, Stephen P. Muench, J. P. Dubey, Robert Krafft Prud'homme, Hernan Lorenzi, Giancarlo A. Biagini, Silvia N.J. Moreno, Craig W. Roberts, S.V. Antonyuk, Colin W. G. Fishwick, Rima McLeod
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19020488

Transcriptomics Sequencing Provides Insights into Understanding the Mechanism of Grass Carp Reovirus Infection
Cited by: 23
Author(s): Chen Geng, Libo He, Le Luo, Rong Huang, Lanjie Liao, Yongming Li, Zhu Zhang, Yaping Wang
Software Mentions: 1
Published: over 8 years ago

10.3389/fncel.2015.00063

Transcriptome analyses of adult mouse brain reveal enrichment of lncRNAs in specific brain regions and neuronal populations
Cited by: 71
Author(s): Beena M. Kadakkuzha, Xinan Liu, Jennifer McCrate, Gautam Shankar, Valerio Rizzo, Alina Afinogenova, Brandon Young, Mohammad Fallahi, Anthony C. Carvalloza, Bindu Raveendra, Sathyanarayanan V. Puthanveettil
Software Mentions: 1
Published: over 11 years ago

10.3389/fncel.2016.00110

Effects of Pin1 Loss in HdhQ111 Knock-in Mice
Cited by: 12
Author(s): Elena Agostoni, Silvia Michelazzi, Marta Maurutto, Alisia Carnemolla, Yari Ciani, Paolo Vatta, Paola Roncaglia, S. Zucchelli, Giampiero Leanza, Fiamma Mantovani, Stefano Gustincich, Claudio Santoro, Silvano Piazza, Giannino Del Sal, Francesca Persichetti
Software Mentions: 1
Published: over 10 years ago

10.3389/fendo.2020.565483

The Effect of FOXC2-AS1 on White Adipocyte Browning and the Possible Regulatory Mechanism
Cited by: 9
Author(s): Yan Wang, Siyu Hua, Xianwei Cui, Yan Cao, Juan Wen, Xia Chi, Lei Pang, Lianghui You
Software Mentions: 1
Published: almost 6 years ago

10.3389/fendo.2018.00131

Growth Hormone Overexpression Disrupts Reproductive Status Through Actions on Leptin
Cited by: 29
Author(s): Ji Chen, Mengxi Cao, Aidi Zhang, Minjun Shi, Binbin Tao, Yongming Li, Yaping Wang, Zhu Zhang, Vance L. Trudeau, Wei Hu
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19051291

Common microRNA–mRNA Interactions in Different Newcastle Disease Virus-Infected Chicken Embryonic Visceral Tissues
Cited by: 22
Author(s): Yanqing Jia, Xinglong Wang, Xiangwei Wang, C X Yan, Changjie Lv, Xiaoqin Li, Zhili Chu, Fathalrhman Eisa Addoma Adam, Sa Xiao, Shuxia Zhang, Zhicong Yang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0201618

Comparative transcriptomics reveals specific responding genes associated with atherosclerosis in rabbit and mouse models
Cited by: 2
Author(s): Liying Wu, Qianlan Yao, Ping Lin, Yixue Li, Hong Li
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2021.607719

Transcriptome Analysis Identifies Candidate Genes and Signaling Pathways Associated With Feed Efficiency in Xiayan Chicken
Cited by: 12
Author(s): Xiao Cong, Jixian Deng, Lei Zeng, Tiantian Sun, Zhuliang Yang, Xiurong Yang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms19082328

Comparative Transcriptomic Analysis of Immune-Related Gene Expression in Duck Embryo Fibroblasts Following Duck Tembusu Virus Infection
Cited by: 19
Author(s): Guanliu Yu, Yun Lin, Yi Tang, Youxiang Diao
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2019.00610

Comparative Transcriptome Analysis Reveals Molecular Basis Underlying Fast Growth of the Selectively Bred Pacific Oyster, Crassostrea gigas
Cited by: 27
Author(s): Fuqiang Zhang, Bing Hu, Huiru Fu, Zexin Jiao, Qi Li, Shikai Liu
Software Mentions: 1
Published: about 7 years ago

10.3389/fphys.2020.00487

Performance and Transcriptional Response of the Green Peach Aphid Myzus persicae to the Restriction of Dietary Amino Acids
Cited by: 2
Author(s): Jun Wu, Hao Lan, Zhan-Feng Zhang, He‐He Cao, Tong‐Xian Liu
Software Mentions: 1
Published: over 6 years ago

10.3389/fphys.2019.00212

Identification of Functional Gene Modules Associated With STAT-Mediated Antiviral Responses to White Spot Syndrome Virus in Shrimp
Cited by: 8
Author(s): Guijin Zhu, Shihao Li, Jun Wu, Fuhua Li, Xing‐Ming Zhao
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2021.650972

Precocious Metamorphosis of Silkworm Larvae Infected by BmNPV in the Latter Half of the Fifth Instar
Cited by: 3
Author(s): Peng Xu, Meirong Zhang, Xue-Yang Wang, Yueming Wu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0199077

Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice
Cited by: 8
Author(s): Wuhan Zhang, Pingyong Sun, Qingfang He, Shu Man Fu, Huafeng Deng
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0110398

Gene Expression Differences among Three Neurospora Species Reveal Genes Required for Sexual Reproduction in Neurospora crassa
Cited by: 33
Author(s): Nina A. Lehr, Zheng Wang, Ning Li, David Hewitt, Francesc López-Giráldez, Frances Trail, Jeffrey P. Townsend
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms20040911

Comparative Transcriptome Analysis of the Pinewood Nematode Bursaphelenchus xylophilus Reveals the Molecular Mechanism Underlying Its Defense Response to Host-Derived α-pinene
Cited by: 26
Author(s): Yongxia Li, Fanli Meng, Xun Deng, Xuan Wang, Yuqian Feng, Wei Zhang, Long Pan, Xingyao Zhang
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2019.01751

Transcriptome Profiling of the Elongating Internode of Cotton (Gossypium hirsutum L.) Seedlings in Response to Mepiquat Chloride
Cited by: 18
Author(s): Li Wang, Ying Yin, Lifeng Wang, Menglei Wang, Miao Zhao, Ye Tian, Yongfang Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.01990

Regulation of Fig (Ficus carica L.) Fruit Color: Metabolomic and Transcriptomic Analyses of the Flavonoid Biosynthetic Pathway
Cited by: 141
Author(s): Ziran Wang, Yuanyuan Cui, Alexander Vainstein, Shangwu Chen, Huiqin Ma
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2015.01155

Loss-of-Function Mutations in CsMLO1 Confer Durable Powdery Mildew Resistance in Cucumber (Cucumis sativus L.)
Cited by: 54
Author(s): Jingtao Nie, Yunli Wang, Hailong He, Chengjun Guo, Wenying Zhu, Jian Pan, Dandan Li, Hongli Li, Junsong Pan, Run Cai
Software Mentions: 1
Published: over 10 years ago

10.7717/peerj.7199

The effects of resveratrol feeding and exercise training on the skeletal muscle function and transcriptome of aged rats
Cited by: 11
Author(s): Jing Zhou, Zhiyin Liao, Jia Jia, Jinliang Chen, Qian Xiao
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20061268

Key Maize Drought-Responsive Genes and Pathways Revealed by Comparative Transcriptome and Physiological Analyses of Contrasting Inbred Lines
Cited by: 74
Author(s): Tinashe Zenda, Songtao Liu, Xuan Wang, Linghong Guo, Hongyu Jin, Anyi Dong, Yatong Yang, Huijun Duan
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2016.02012

Transcriptome Analysis of the Cf-12-Mediated Resistance Response to Cladosporium fulvum in Tomato
Cited by: 17
Author(s): Dongqi Xue, Xiuling Chen, Hong Zhang, Xinfeng Chai, Jingbin Jiang, Xiangyang Xu, Jin-Fu Li
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20061282

Global Gene Expression of Seed Coat Tissues Reveals a Potential Mechanism of Regulating Seed Size Formation in Castor Bean
Cited by: 9
Author(s): Anmin Yu, Zaiqing Wang, Yang Zhang, Fēi Li, Aizhong Liu
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.639132

Membrane Lipids’ Metabolism and Transcriptional Regulation in Maize Roots Under Cold Stress
Cited by: 9
Author(s): Xunchao Zhao, Yulei Wei, Jinjie Zhang, Yang Li, Xinyu Liu, Haiyang Zhang, Wang Shao, Lin He, Zuotong Li, Yifei Zhang, Jingyu Xu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0152425

FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-γ Receptors in Human B Cells
Cited by: 11
Author(s): Xinxia Peng, Shuying S. Li, Peter B. Gilbert, Daniel E. Geraghty, Michael G. Katze
Software Mentions: 1
Published: over 10 years ago

Projects: pypi: HTSeq

Science Score: 65/100

Bonuses:

Penalties:

Papers Mentioning HTSeq 3,071