pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.1002/1878-0261.12183

Biomarker potential ofST6GALNAC3andZNF660promoter hypermethylation in prostate cancer tissue and liquid biopsies
Cited by: 46
Author(s): Christa Haldrup, Anne L. Pedersen, Nadia Øgaard, Siri H. Strand, Søren Høyer, Michael Borre, Torben F. Ørntoft, Karina D. Sørensen
Software Mentions: 1
Published: over 8 years ago

10.1186/s12896-015-0155-7

Evaluating whole transcriptome amplification for gene profiling experiments using RNA-Seq
Cited by: 23
Author(s): Sheena L. Faherty, C. Ryan Campbell, Peter A. Larsen, Anne D. Yoder
Software Mentions: 1
Published: about 11 years ago

10.3390/molecules25204857

Antibacterial Efficacy and Mechanism of Mannosylerythritol Lipids-A on Listeria monocytogenes
Cited by: 12
Author(s): Xiayu Liu, Qin Shu, Qihe Chen, Xinxin Pang, Yansha Wu, Wanyi Zhou, Yan‐Dong Wu, Jianrui Niu, Xinglin Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules23112995

Insecticidal Activities of Chloramphenicol Derivatives Isolated from a Marine Alga-Derived Endophytic Fungus, Acremonium vitellinum, against the Cotton Bollworm, Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae)
Cited by: 15
Author(s): Dan Chen, Peng Zhang, Tong Liu, Xiufang Wang, Zhaoxia Li, Wei Li, Fenglong Wang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12958-020-00659-z

Sphingosine 1-phosphate protects against radiation-induced ovarian injury in female rats—impact on mitochondrial-related genes
Cited by: 6
Author(s): Jiahui Zhao, Shuyun Zhang, Liesong Chen, Xiaolong Liu, Haihong Su, Lili Chen, Li Yang, Hong Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41388-019-1116-8

Systematic characterization of chromatin modifying enzymes identifies KDM3B as a critical regulator in castration resistant prostate cancer
Cited by: 23
Author(s): Hilal Saraç, Tunç Morova, Elisabete Pires, James McCullagh, Anıl Kaplan, Ahmet Cingöz, Tugba Bagcı-Önder, Tamer T. Önder, Akane Kawamura, Nathan A. Lack
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12284-021-00509-5

Panicle Apical Abortion 3 Controls Panicle Development and Seed Size in Rice
Cited by: 7
Author(s): Fang Yang, Xiong Mao, Mingjiang Huang, Zhongcheng Li, Ziyi Wang, Hao Zhu, Rui Chen, Lu Lu, Qinglan Cheng, Yan Wang, Jun Tang, Hui Zhuang, Yunfeng Li
Software Mentions: 1
Published: about 5 years ago

10.1111/acel.13407

Chloride channel accessory 1 integrates chloride channel activity and mTORC1 in aging‐related kidney injury
Cited by: 8
Author(s): Hak‐Joo Lee, Andrew Donati, Denis Féliers, Yuyang Sun, Yanli Ding, Muniswamy Madesh, Adam B. Salmon, Yuji Ikeno, Corinna N. Ross, Christopher O’Connor, Wenjun Ju, Markus Bitzer, Yidong Chen, Goutam Ghosh Choudhury, Brij B. Singh, Kumar Sharma, Balakuntalam S. Kasinath
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.103901

Identification of a hippocampal lncRNA-regulating network in cognitive dysfunction caused by chronic cerebral hypoperfusion
Cited by: 4
Author(s): Zhiliang Yao, Jing Wang, Bing-Zhen Shen, Yutong Li, Xiaoli Yao, Shaofeng Zhang, Yong Zhang, Jichang Hu, Yanchun Xie
Software Mentions: 1
Published: almost 6 years ago

10.1126/sciadv.aay5366

A psychological stressor conveyed by appetite-linked neurons
Cited by: 11
Author(s): Eun Jeong Lee, Naresh K. Hanchate, Kunio Kondoh, Ai Phuong Tong, Donghui Kuang, Andrew Spray, Xiaolan Ye, Linda B. Buck
Software Mentions: 1
Published: over 6 years ago

10.1186/1477-7827-11-3

Changes in the transcriptome of morula-stage bovine embryos caused by heat shock: relationship to developmental acquisition of thermotolerance
Cited by: 42
Author(s): Miki Sakatani, L. Bonilla, Kyle B. Dobbs, J. Block, Manabu Ozawa, Savita Shanker, Jiqiang Yao, Peter J. Hansen
Software Mentions: 1
Published: over 13 years ago

10.1186/s13014-018-1075-1

RNA-sequencing in non-small cell lung cancer shows gene downregulation of therapeutic targets in tumor tissue compared to non-malignant lung tissue
Cited by: 7
Author(s): Kobe Reynders, Els Wauters, Matthieu Moisse, Herbert Decaluwé, Paul De Leyn, Stéphanie Peeters, Maarten Lambrecht, Kristiaan Nackaerts, Christophe Dooms, Wim Janssens, Johan Vansteenkiste, Diether Lambrechts, Dirk De Ruysscher
Software Mentions: 1
Published: about 8 years ago

10.1007/s13238-019-0637-9

Core pluripotency factors promote glycolysis of human embryonic stem cells by activating GLUT1 enhancer
Cited by: 19
Author(s): Lili Yu, Kaiyuan Ji, Jian Zhang, Yan-Xia Xu, Ying Ye, Taoyi Mai, Shen Xu, Qian-bing Zhang, Kangde Yao, Yang Xu
Software Mentions: 1
Published: over 7 years ago

10.1073/pnas.2100559118

Transposon-mediated insertional mutagenesis unmasks recessive insecticide resistance in the aphid Myzus persicae
Cited by: 15
Author(s): Michela Panini, Olga Chiesa, Bartlomiej J. Troczka, Mark D. Mallott, Gian Carlo Manicardi, Stefano Cassanelli, Filippo Cominelli, Alex Hayward, Emanuele Mazzoni, Chris Bass
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2024846118

Substrate discrimination and quality control require each catalytic activity of TRAMP and the nuclear RNA exosome
Cited by: 6
Author(s): Mom Das, Dimitrios Zattas, John C. Zinder, Elizabeth V. Wasmuth, Julien Henri, Christopher D. Lima
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009790

Efficient Dicer processing of virus-derived double-stranded RNAs and its modulation by RIG-I-like receptor LGP2
Cited by: 14
Author(s): Yuqiang Zhang, Yan Xu, Yunpeng Dai, Zhe Li, Jiaxing Wang, Yang Liu, Yanxin Ren, Hua Wang, Wan-xiang Li, Jinfeng Lü, Shou‐Wei Ding, Li Yang
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules23030584

Melatonin Improves Heat Tolerance in Kiwifruit Seedlings through Promoting Antioxidant Enzymatic Activity and Glutathione S-Transferase Transcription
Cited by: 86
Author(s): Dong Liang, Fan Gao, Zhiyou Ni, Lijin Lin, Qunxian Deng, Yi Tang, Xun Wang, Xian Luo
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1009617

The RyfA small RNA regulates oxidative and osmotic stress responses and virulence in uropathogenic Escherichia coli
Cited by: 17
Author(s): Hicham Bessaiah, Pravil Pokharel, Hamza Loucif, Merve Kulbay, Charles Sasseville, Hajer Habouria, Sébastien Houle, Jacques Bernier, Éric Massé, Julien van Grevenynghe, Charles M. Dozois
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1007627

Inflammatory monocytes are detrimental to the host immune response during acute infection with Cryptococcus neoformans
Cited by: 40
Author(s): Lena J. Heung, Tobias M. Hohl
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1007440

Neddylation contributes to CD4+ T cell-mediated protective immunity against blood-stage Plasmodium infection
Cited by: 18
Author(s): Qianqian Cheng, Jian Liu, Yujun Pei, Yaolin Zhang, Dawang Zhou, Weiqing Pan, Jiyan Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1006020

Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation
Cited by: 57
Author(s): Christian Berrios, Megha Padi, Mark A. Keibler, Donglim Esther Park, Molla Vadim, Jingwei Cheng, Soo Mi Lee, Gregory Stephanopoulos, John Quackenbush, James A. DeCaprio
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1005965

A Viral Immunity Chromosome in the Marine Picoeukaryote, Ostreococcus tauri
Cited by: 30
Author(s): Sheree Yau, Hemon Claire, Évelyne Derelle, Hervé Moreau, Gwenaël Piganeau, Nigel Grimsley
Software Mentions: 1
Published: almost 10 years ago

10.3390/molecules24183380

Transcriptome and Metabolite Profiling Reveal Novel Insights into Volatile Heterosis in the Tea Plant (Camellia Sinensis)
Cited by: 25
Author(s): Yuanrun Zheng, Pengjie Wang, Xuejin Chen, Yun Sun, Chuan Yue, Naixing Ye
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.ppat.1005511

Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection
Cited by: 127
Author(s): Yuan Li, Sheena Shah-Simpson, Kwame Okrah, Ashton T. Belew, Jungmin Choi, Kacey L. Caradonna, Prasad K. Padmanabhan, David Ndegwa, Mohamed-Ramzi Temanni, Héctor Corrada Bravo, Najib M. El-Sayed, Barbara A. Burleigh
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erx443

Transcript levels of orf288 are associated with the hau cytoplasmic male sterility system and altered nuclear gene expression in Brassica juncea
Cited by: 25
Author(s): Shuangping Heng, Jie Gao, Chao Wei, Fengyi Chen, Xianwen Li, Jing Wen, Bin Yi, Chaozhi Ma, Jinxing Tu, Tingdong Fu, Jinxiong Shen
Software Mentions: 1
Published: over 8 years ago

10.1038/s41597-019-0185-4

Longitudinal RNA-Seq analysis of acute and chronic neurogenic skeletal muscle atrophy
Cited by: 14
Author(s): Jeffrey T. Ehmsen, Riki Kawaguchi, Ruifa Mi, Giovanni Coppola, Ahmet Höke
Software Mentions: 1
Published: almost 7 years ago

10.1080/1061186X.2019.1710157

Liposomal delivery of hydrophobic RAMBAs provides good bioavailability and significant enhancement of retinoic acid signalling in neuroblastoma tumour cells
Cited by: 4
Author(s): Maja Bilip, Shreya Shah, Mayuran Mathiyalakan, Aristides D. Tagalakis, Stephen L. Hart, Ruhina Maeshima, Simon Eaton, Michael Orford, Elsa Irving, Alessia Di Florio, Claire Simons, Andrew W. Stoker
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/9010314

A Genome-Wide Analysis of Long Noncoding RNAs in Circulating Leukocytes and Their Differential Expression in Type 1 Diabetes Patients
Cited by: 2
Author(s): Yihan Liu, Xiaoming Du, Jia Cui, Changlong Li, Meng Guo, Jing Lv, Xin Liu, Jingtao Dou, Xiaoyan Du, Hongjuan Fang, Zhenwen Chen
Software Mentions: 1
Published: almost 6 years ago

10.1172/JCI125857

C-type lectin receptors Mcl and Mincle control development of multiple sclerosis–like neuroinflammation
Cited by: 25
Author(s): Marie N’diaye, Susanna Brauner, Sevasti Flytzani, Lara Kular, Andreas Warnecke, Milena Z. Adzemovic, Eliane Piket, Jin Hong Min, Will Edwards, Filia Mela, Hoi Ying Choi, Vera Magg, Tojo James, Magdalena Lindén, Holger M. Reichardt, Michael R. Daws, Jack van Horssen, Ingrid Kockum, Robert A. Harris, Tomas Olsson, André Ortlieb Guerreiro-Cacais, Maja Jagodic
Software Mentions: 1
Published: over 6 years ago

10.1002/jcp.26222

Comprehensive transcriptome analysis of fluid shear stress altered gene expression in renal epithelial cells
Cited by: 31
Author(s): Steven J. Kunnen, Tareq B. Malas, Cornelis M. Semeins, Astrid D. Bakker, Dorien J.M. Peters
Software Mentions: 1
Published: almost 9 years ago

10.1111/jcmm.16824

miRNA expression analysis in the human heart: Undifferentiated progenitors vs. bioptic tissues—Implications for proliferation and ageing
Cited by: 5
Author(s): Gioacchin Iannolo, Maria Rita Sciuto, Nicola Cuscino, Claudia Carcione, Claudia Coronnello, Cinzia Maria Chinnici, Giuseppe Maria Raffa, Michele Pilato, Pier Giulio Conaldi
Software Mentions: 1
Published: about 5 years ago

10.1038/srep10562

Effects of Tris(1,3-dichloro-2-propyl) Phosphate (TDCPP) in Tetrahymena Thermophila: Targeting the Ribosome
Cited by: 30
Author(s): Jing Li, John P. Giesy, Lei Yu, Guangyu Li, Chunsheng Liu
Software Mentions: 1
Published: over 11 years ago

10.1186/s12915-016-0234-9

Detection of pup odors by non-canonical adult vomeronasal neurons expressing an odorant receptor gene is influenced by sex and parenting status
Cited by: 17
Author(s): Thiago S. Nakahara, Leonardo Minete Cardozo, Ximena Ibarra-Soria, Andrew Daniel Bard, Vinicius Miessler de Andrade Carvalho, Guilherme Ziegler Trintinalia, Darren W. Logan, Fábio Papes
Software Mentions: 1
Published: over 10 years ago

10.1111/jcmm.16285

A novel Cytochrome P450 26A1 expressing NK cell subset at the mouse maternal‐foetal interface
Cited by: 2
Author(s): Dongbin Wei, Dandan Li, Aiqin Gu, Wen‐Heng Ji, Ying Yang, Jing‐Pian Peng
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.15063

METTL3/YTHDF2 m 6 A axis promotes tumorigenesis by degrading SETD7 and KLF4 mRNAs in bladder cancer
Cited by: 86
Author(s): Haiyun Xie, Jiangfeng Li, Yufan Ying, Huaqing Yan, Ke Jin, Xueyou Ma, Liujia He, Xin Xu, Ben Liu, Xiao Wang, Xiangyi Zheng, Liping Xie
Software Mentions: 1
Published: over 6 years ago

10.1111/mec.15752

Gene expression during larval caste determination and differentiation in intermediately eusocial bumblebees, and a comparative analysis with advanced eusocial honeybees
Cited by: 5
Author(s): David H. Collins, Anna Wirén, Marjorie Labédan, Michael G. Smith, D. C. Prince, Irina Mohorianu, Tamàs Dalmay, Andrew F. G. Bourke
Software Mentions: 1
Published: over 5 years ago

10.1186/1755-8166-7-S1-P87

Defining the effects of prematurity on the lymphocyte transcriptome
Cited by: 0
Author(s): Soumyaroop Bhattacharya, Ravi S. Misra, Heidi Hyuck, Christopher Slaunwhite, Shannon Castiglione, Deanna Maffett, Anne Marie Reynolds, Gloria S. Pryhuber, Thomas J. Mariani
Software Mentions: 1
Published: over 12 years ago

10.1111/jcmm.14921

Divergent effects of canonical and non‐canonical TGF‐β signalling on mixed contractile‐synthetic smooth muscle cell phenotype in human Marfan syndrome aortic root aneurysms
Cited by: 24
Author(s): Albert J Pedroza, Tiffany Koyano, Jeffrey D Trojan, Adam J. Rubin, Itai Palmon, Kevin J Jaatinen, Grayson Burdon, Paul Chang, Yasushi Tashima, Jason Z. Cui, G. Berry, Cristiana Iosef, Michael P. Fischbein
Software Mentions: 1
Published: over 6 years ago

10.1186/s13036-021-00260-x

Optimized expression of Hfq protein increases Escherichia coli growth
Cited by: 5
Author(s): Phuong Vo, Hyang-Mi Lee, Jun Ren, Dokyun Na
Software Mentions: 1
Published: over 5 years ago

10.1093/molbev/msx205

The Influence of Polyploidy on the Evolution of Yeast Grown in a Sub-Optimal Carbon Source
Cited by: 31
Author(s): Amber Lynne Scott, Phillip A. Richmond, Robin Dowell, Anna Selmecki
Software Mentions: 1
Published: about 9 years ago

10.1186/s12915-021-01142-w

Competition-based screening helps to secure the evolutionary stability of a defensive microbiome
Cited by: 8
Author(s): Sarah F. Worsley, Tabitha M. Innocent, Neil A. Holmes, Mahmoud M. Al‐Bassam, Morten Schiøtt, Barrie Wilkinson, J. Colin Murrell, Jacobus J. Boomsma, Douglas W. Yu, Matthew I. Hutchings
Software Mentions: 1
Published: about 5 years ago

10.1074/jbc.RA120.012730

Deletion of fatty acid transport protein 2 (FATP2) in the mouse liver changes the metabolic landscape by increasing the expression of PPARα-regulated genes
Cited by: 17
Author(s): Vincent M. Perez, Jeffrey Gabell, Mark Behrens, Nishikant Wase, Concetta C. DiRusso, Paul N. Black
Software Mentions: 1
Published: over 6 years ago

10.1038/srep25828

The transcriptome of mouse central nervous system myelin
Cited by: 64
Author(s): Sudhir Thakurela, Angela Garding, Ramona B. Jung, Christina Müller, Sandra Goebbels, Robin White, Hauke Werner, Vijay Tiwari
Software Mentions: 1
Published: over 10 years ago

10.4049/immunohorizons.2000088

RAB11FIP5-Deficient Mice Exhibit Cytokine-Related Transcriptomic Signatures
Cited by: 0
Author(s): Dapeng Li, Todd Bradley, Derek W. Cain, Isabela Pedroza-Pacheco, Maria Aggelakopoulou, Robert Parks, Maggie Barr, Shi-Mao Xia, Richard M. Scearce, Cindy Bowman, Grace Stevens, Amanda Newman, Bhavna Hora, Yue Chen, Kristina J. Riebe, Yunfei Wang, Gregory D. Sempowski, Kevin O. Saunders, Persephone Borrow, Barton F. Haynes
Software Mentions: 1
Published: almost 6 years ago

10.1002/iid3.146

Innate CD8αα+lymphocytes enhance anti-CD40 antibody-mediated colitis in mice
Cited by: 15
Author(s): Abhishek Kumar, Alberto Delgado, M. Blanca Piazuelo, Luc Van Kaer, Danyvid Olivares–Villagómez
Software Mentions: 1
Published: over 9 years ago

10.1186/s13229-015-0008-1

Fmrp targets or not: long, highly brain-expressed genes tend to be implicated in autism and brain disorders
Cited by: 30
Author(s): Rebecca Ouwenga, Joseph D. Dougherty
Software Mentions: 1
Published: over 11 years ago

10.1038/s41438-018-0015-4

Cytological, physiological, and transcriptomic analyses of golden leaf coloration in Ginkgo biloba L
Cited by: 74
Author(s): Weixing Li, Shunbo Yang, Zhaogeng Lu, Zhao‐Rong He, Yunling Ye, Beibei Zhao, Li Wang, Biao Jin
Software Mentions: 1
Published: over 8 years ago

10.1038/s41438-019-0149-z

Comparative transcriptome analysis reveals defense responses against soft rot in Chinese cabbage
Cited by: 30
Author(s): Mengyang Liu, Fang Wu, Shan Wang, Yin Lu, Xueping Chen, Yanhua Wang, Aiqin Gu, Zhao Jian-jun, Shuxing Shen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41438-021-00569-0

Combination of genetic analysis and ancient literature survey reveals the divergence of traditional Brassica rapa varieties from Kyoto, Japan
Cited by: 8
Author(s): Yaichi Kawakatsu, Tomoaki Sakamoto, Hokuto Nakayama, Kaori Kaminoyama, Kaori Igarashi, Masaki Yasugi, Hiroshi Kudoh, Atsushi J. Nagano, Kentarô Yano, Nakao Kubo, Michitaka Notaguchi, Seisuke Kimura
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-16-S15-P1

Synaptic plasticity in infralimbic cortex mediates socially-acquired nicotine self-administration
Cited by: 17
Author(s): Hao Chen, Tengfei Wang, Wenyan Han
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep27463

Stimulation of superoxide production increases fungicidal action of miconazole against Candida albicans biofilms
Cited by: 26
Author(s): Kaat De Cremer, Klaas De Brucker, Ines Staes, Annelies Peeters, Freija Van den Driessche, Tom Coenye, Bruno P. A. Cammue, Karin Thevissen
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms8060858

Interaction of Varroa destructor and Sublethal Clothianidin Doses during the Larval Stage on Subsequent Adult Honey Bee (Apis mellifera L.) Health, Cellular Immunity, Deformed Wing Virus Levels and Differential Gene Expression
Cited by: 8
Author(s): Nuria Morfin, Paul H. Goodwin, Ernesto Guzmán-Novoa
Software Mentions: 1
Published: over 6 years ago

10.1038/srep29404

The genome and transcriptome of Trichormus sp. NMC-1: insights into adaptation to extreme environments on the Qinghai-Tibet Plateau
Cited by: 23
Author(s): Qin Qiao, Ying Huang, Ji-I. Qi, Mingzhi Qu, Chen Jiang, Peng-Cheng Lin, Renhui Li, Lirong Song, Takahiro Yonezawa, Masami Hasegawa, M. James C. Crabbe, Fan Chen, Ticao Zhang, Yang Zhong
Software Mentions: 1
Published: about 10 years ago

10.1038/s41438-019-0201-z

Gene characterization and molecular pathway analysis of reverse thermosensitive genic male sterility in eggplant (Solanum melongena L.)
Cited by: 9
Author(s): Bing Li, Xueping Chen, Wu YanRong, Aiqin Gu, Jingjing Zhang, Sushan Luo, Gao XiuRui, Jianjun Zhao, Xuebiao Pan, Shuxing Shen
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep30576

Genome-wide transcriptomic analysis uncovers the molecular basis underlying early flowering and apetalous characteristic in Brassica napus L
Cited by: 12
Author(s): Kunjiang Yu, Xiaodong Wang, Feng Chen, Song Chen, Qi Peng, Hongge Li, Wei Zhang, Meijiao Hu, Pu Chu, Jiefu Zhang, Rongzhan Guan
Software Mentions: 1
Published: about 10 years ago

10.1186/s41065-019-0085-9

Global transcriptome analysis of H5N1 influenza virus-infected human cells
Cited by: 13
Author(s): Ying Cao, Zhang Kun, Lirong Liu, Wei Li, Bin Zhu, Shuang Zhang, Ping Xu, Wenjun Liu, Jing Li
Software Mentions: 1
Published: over 7 years ago

10.1186/s41065-021-00186-w

Network analysis of potential risk genes for psoriasis
Cited by: 2
Author(s): Huilin Wang, Wenjun Chen, Jin He, Wenjuan Xu, Jiangwei Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s41065-020-00134-0

Transcriptome analysis on responses of orchardgrass (Dactylis glomerata L.) leaves to a short term flooding
Cited by: 16
Author(s): Dandan Qiao, Yajie Zhang, Xue-Mei Xiong, Mingyang Li, Kaiyong Cai, Hongyu Luo, Bing Zeng
Software Mentions: 1
Published: over 6 years ago

10.1097/HS9.0000000000000233

AXL Inhibition Extinguishes Primitive JAK2 Mutated Myeloproliferative Neoplasm Progenitor Cells
Cited by: 4
Author(s): Stella Pearson, Rognvald Blance, Tim C. P. Somervaille, Anthony D. Whetton, Andrew Pierce
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-017-1526-y

Comprehensive evaluation of RNA-seq quantification methods for linearity
Cited by: 46
Author(s): Haijing Jin, Ying-Wooi Wan, Zhandong Liu
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms8020211

The Dysbiosis of Gut Microbiota Caused by Low-Dose Cadmium Aggravate the Injury of Mice Liver through Increasing Intestinal Permeability
Cited by: 34
Author(s): Yehao Liu, Yuhui Li, Yuhong Xia, Kaiyong Liu, Lingling Ren, Yan-Li Ji
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9050970

Caenorhabditis elegans Extracts Stimulate IAA Biosynthesis in Arthrobacter pascens ZZ21 via the Indole-3-pyruvic Acid Pathway
Cited by: 3
Author(s): Mengsha Li, Teng Li, Ming Zhou, Yexin Zhao, Jinming Xu, Feng Hu, Huixin Li
Software Mentions: 1
Published: over 5 years ago

10.1186/s40168-021-01098-7

Breed differences in the expression levels of gga-miR-222a in laying hens influenced H2S production by regulating methionine synthase genes in gut bacteria
Cited by: 5
Author(s): Si-Cheng Xing, Chun-Bo Huang, Ruizhu Wu, Yiwen Yang, Jingyuan Chen, Jiandui Mi, Yinbao Wu, Yan Wang, Xindi Liao
Software Mentions: 1
Published: about 5 years ago

10.1038/srep38903

Differential transcription profiles of long non-coding RNAs in primary human brain microvascular endothelial cells in response to meningitic Escherichia coli
Cited by: 35
Author(s): Ruicheng Yang, Fei Huang, Jiyang Fu, Beibei Dou, Bin Xu, Miao Ling, Wentong Liu, Xiaopei Yang, Chen Tan, Huanchun Chen, Xiangru Wang
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.26830

Rapid activation of epithelial-mesenchymal transition drives PARP inhibitor resistance in Brca2-mutant mammary tumours
Cited by: 16
Author(s): Liliana Ordonez, Trevor Hay, Robert McEwen, Urszula M. Polanska, Adina Hughes, Oona Delpuech, Elaine Cadogan, Steve Powell, Jonathan R. Dry, Giusy Tornillo, Lucy Silcock, Elisabetta Leo, Mark J. O’Connor, Alan R. Clarke, Matthew J. Smalley
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-017-0386-z

Influenza A virus infection impacts systemic microbiota dynamics and causes quantitative enteric dysbiosis
Cited by: 173
Author(s): Soner Yildiz, Béryl Mazel-Sanchez, Matheswaran Kandasamy, Balaji Manicassamy, Mirco Schmolke
Software Mentions: 1
Published: over 8 years ago

10.1186/s13099-018-0236-y

Chlortetracycline and florfenicol induce expression of genes associated with pathogenicity in multidrug-resistant Salmonella enterica serovar Typhimurium
Cited by: 8
Author(s): Devin B. Holman, Shawn M. D. Bearson, Bradley L. Bearson, Brian W. Brunelle
Software Mentions: 1
Published: over 8 years ago

10.1128/MRA.00618-20

Transcriptome Sequencing Data of Bacillus anthracis Vollum Δ htrA and Its Parental Strain, Isolated under Oxidative Stress
Cited by: 1
Author(s): Theodor Chitlaru, Inbar Cohen-Gihon, Ofir Israeli, Uri Elia, Galia Zaide, Moshe Israeli, Adi Beth-Din, Shirley Lazar, Sharon Ehrlich, Anat Zvi, Ofer Cohen
Software Mentions: 1
Published: about 6 years ago

10.1093/gigascience/giy030

The first whole transcriptomic exploration of pre-oviposited early chicken embryos using single and bulked embryonic RNA-sequencing
Cited by: 11
Author(s): Young Sun Hwang, Minseok Seo, Hee Jung Choi, Sang Kyung Kim, Heebal Kim, Jae Yong Han
Software Mentions: 1
Published: over 8 years ago

10.1534/g3.119.400818

Comparative Transcriptome Profiling Reveals Compatible and Incompatible Patterns of Potato Toward Phytophthora infestans
Cited by: 27
Author(s): Yanfeng Duan, Shaoguang Duan, Miles Armstrong, Jianfei Xu, Junli Zheng, Jun Hu, Xinwei Chen, Ingo Hein, Guangcun Li, Liping Jin
Software Mentions: 1
Published: over 6 years ago

10.1038/srep41960

Expression of human endogenous retrovirus-K is strongly associated with the basal-like breast cancer phenotype
Cited by: 64
Author(s): Gary L. Johanning, Gabriel G. Malouf, Xiaofeng Zheng, Francisco J. Esteva, John N. Weinstein, Feng Wang-Johanning, Xiaoping Su
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.26287

Steroid hormone induction of temporal gene expression in Drosophila brain neuroblasts generates neuronal and glial diversity
Cited by: 113
Author(s): Mubarak Hussain Syed, Brandon Mark, Chris Q. Doe
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43397

bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice
Cited by: 32
Author(s): Rajeev Ranjan, Ritika Khurana, Naveen Malik, Saurabh Badoni, Swarup K. Parida, Sanjay Kapoor, Akhilesh K. Tyagi
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.34961

Variations in HLA-B cell surface expression, half-life and extracellular antigen receptivity
Cited by: 36
Author(s): Brogan Yarzabek, Anita Zaitouna, Edwin Olson, Gayathri N. Silva, Jie Geng, Aviva Geretz, Rasmi Thomas, Sujatha Krishnakumar, Daniel Ramón, Malini Raghavan
Software Mentions: 1
Published: about 8 years ago

10.1038/srep44867

Tricyclic Antidepressants Promote Ceramide Accumulation to Regulate Collagen Production in Human Hepatic Stellate Cells
Cited by: 21
Author(s): Jennifer Y. Chen, Benjamin Newcomb, Chan Zhou, Joshua V. Pondick, Sarani Ghoshal, Samuel R. York, Daniel L. Motola, Nicolas Coant, Jae Kyo Yi, Cungui Mao, Kenneth K. Tanabe, Irina Bronova, Evgeny Berdyshev, Bryan C. Fuchs, Yusuf A. Hannun, Raymond T. Chung, Alan C. Mullen
Software Mentions: 1
Published: over 9 years ago

10.1186/s13075-021-02595-8

Elucidating mechano-pathology of osteoarthritis: transcriptome-wide differences in mechanically stressed aged human cartilage explants
Cited by: 9
Author(s): E. Houtman, Margo Tuerlings, Janne Riechelman, Eka Suchiman, Robert J. P. van der Wal, Rob G H H Nelissen, Hailiang Mei, Y.F. Ramos, Rodrigo Coutinho de Almeida, Ingrid Meulenbelt
Software Mentions: 1
Published: about 5 years ago

10.1128/MRA.00982-19

RNA Sequencing Data Sets Identifying Differentially Expressed Transcripts during Campylobacter jejuni Biofilm Formation
Cited by: 4
Author(s): Greg Tram, William P. Klare, Joel A. Cain, Basem Mourad, Stuart J. Cordwell, Victoria Korolik, Christopher J. Day
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400229

Comparative Transcriptome Analyses Revealed Conserved and Novel Responses to Cold and Freezing Stress in Brassica napus L
Cited by: 28
Author(s): Xin He, Xianchao Ni, Ping Xie, Wei Liu, Yang Gi Min, Yu Kang, Lunwen Qin, Hua Wei
Software Mentions: 1
Published: about 7 years ago

10.1038/srep45303

The E. coli molecular phenotype under different growth conditions
Cited by: 41
Author(s): Mehmet Umut Caglar, John R. Houser, Craig S. Barnhart, Daniel R. Boutz, Sean M. Carroll, Aurko Dasgupta, Walter F. Lenoir, Bartram L Smith, Viswanadham Sridhara, Dariya K. Sydykova, Drew Vander Wood, Christopher J. Marx, Edward M. Marcotte, Jeffrey E. Barrick, Claus O. Wilke
Software Mentions: 1
Published: over 9 years ago

10.1002/mbo3.440

N-acylhomoserine lactone-regulation of genes mediating motility and pathogenicity inPseudomonas syringaepathovartabaci11528
Cited by: 7
Author(s): Feifei Cheng, Anzhou Ma, Ji Luo, Xuliang Zhuang, Guoqiang Zhuang
Software Mentions: 1
Published: over 9 years ago

10.1002/mbo3.1227

Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor
Cited by: 2
Author(s): Takashi Okubo, Hideto Takami
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-02643-x

Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice
Cited by: 32
Author(s): Xiaoxing Liang, Xujun Chen, Li Cheng, Jun Fan, Zejian Guo
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.117.300257

Large-Scale Low-Cost NGS Library Preparation Using a Robust Tn5 Purification and Tagmentation Protocol
Cited by: 99
Author(s): Bianca P. Hennig, Lars Velten, Ines Racke, Chelsea Szu-Tu, Matthias Thoms, Vladimir Rybin, Hüseyin Besir, Kim Remans, Lars M. Steinmetz
Software Mentions: 1
Published: over 8 years ago

10.1002/mbo3.357

RNA‐seq transcriptome analysis of a Pseudomonas strain with diversified catalytic properties growth under different culture medium
Cited by: 16
Author(s): Jiawei Yang, Daijun Zheng, Bao‐Dong Cui, Min Yang, Yong‐Zheng Chen
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.117.042127

Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses
Cited by: 40
Author(s): Francisco A. Cubillos, Claire Brice, Jennifer Molinet, Sébastien Tisné, Valentina Abarca, Sebastián M. Tapia, Christian I. Oporto, Verónica García, Gianni Liti, Claudio Martı́nez
Software Mentions: 1
Published: over 9 years ago

10.1002/mbo3.763

Decreased biofilm formation ability of Acinetobacter baumannii after spaceflight on China's Shenzhou 11 spacecraft
Cited by: 20
Author(s): Xian Zhao, Yi Yu, Xuelin Zhang, Bing Huang, Po Bai, Chou Xu, Diangeng Li, Bin Zhang, Changting Liu
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12934-021-01561-y

Enhanced ascomycin production in Streptomyces hygroscopicus var. ascomyceticus by employing polyhydroxybutyrate as an intracellular carbon reservoir and optimizing carbon addition
Cited by: 9
Author(s): Pan Wang, Ying Yin, Xin Wang, Jianping Wen
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.116.035444

Microenvironmental Gene Expression Plasticity Among IndividualDrosophila melanogaster
Cited by: 30
Author(s): Yanzhu Lin, Zhenxia Chen, Brian Oliver, Susan T Harbison
Software Mentions: 1
Published: almost 10 years ago

10.1534/g3.116.027995

Characterization of a Single Genomic Locus Encoding the Clustered Protocadherin Receptor Diversity in Xenopus tropicalis
Cited by: 7
Author(s): Hakki Emre Etlioglu, Wei Sun, Zengjin Huang, Wei Chen, Dietmar Schmucker
Software Mentions: 1
Published: about 10 years ago

10.1534/g3.116.027870

Preparing for Winter: The Transcriptomic Response Associated with Different Day Lengths in Drosophila montana
Cited by: 36
Author(s): Darren J. Parker, Michael G. Ritchie, Maaria Kankare
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.115.023366

Diverse Hormone Response Networks in 41 IndependentDrosophilaCell Lines
Cited by: 37
Author(s): Marcus H. Stoiber, S Celniker, Lucy Cherbas, Ben Brown, Peter Cherbas
Software Mentions: 1
Published: over 10 years ago

10.1186/s12934-021-01593-4

Anaerobic biosynthesis of rhamnolipids by Pseudomonas aeruginosa: performance, mechanism and its application potential for enhanced oil recovery
Cited by: 9
Author(s): Feng Zhao, Qingzhi Wang, Ying Zhang, Lei Liu
Software Mentions: 1
Published: over 5 years ago

10.3390/md17020082

Metabolomic and Transcriptomic Analyses of Escherichia coli for Efficient Fermentation of L-Fucose
Cited by: 19
Author(s): Jungyeon Kim, Yu Eun Cheong, In‐Ho Jung, Kyoung Heon Kim
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-05313-0

Inhibition of β-Glucocerebrosidase Activity Preserves Motor Unit Integrity in a Mouse Model of Amyotrophic Lateral Sclerosis
Cited by: 36
Author(s): Alexandre Cruz Henriques, Mylene Huebecker, Hélène Blasco, Céline Keime, Christian R. Andres, Philippe Corcia, David A. Priestman, Frances M. Platt, Michael Spedding, Jean‐Philippe Loeffler
Software Mentions: 1
Published: about 9 years ago

10.3390/antibiotics10030246

Antimicrobial Effect and the Mechanism of Diallyl Trisulfide against Campylobacter jejuni
Cited by: 11
Author(s): Yuanyue Tang, Fengming Li, Danan Gu, Wenyan Wang, Jinlin Huang, Xinan Jiao
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.41497

ASH1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin
Cited by: 47
Author(s): Vincent T. Bicocca, Tereza Ormsby, Keyur K. Adhvaryu, Shinji Honda, Eric U. Selker
Software Mentions: 1
Published: almost 8 years ago

10.1534/g3.115.021220

Oviposition but Not Sex Allocation Is Associated with Transcriptomic Changes in Females of the Parasitoid Wasp Nasonia vitripennis
Cited by: 9
Author(s): Nicola Cook, Urmi Trivedi, Bart A. Pannebakker, Mark Blaxter, Michael G. Ritchie, Eran Tauber, Tanya Sneddon, David M. Shuker
Software Mentions: 1
Published: almost 11 years ago

10.3389/fvets.2020.575865

Analysis of Transcriptomic Changes in Bovine Endometrial Stromal Cells Treated With Lipopolysaccharide
Cited by: 8
Author(s): Xuefen Ding, Haimiao Lv, Ling Deng, Wenju Hu, Peng Zhan, Chenbo Yan, Dexin Yang, Chao Tong, Xinzhuang Wang
Software Mentions: 1
Published: almost 6 years ago

10.3390/md18070360

Glyceroglycolipid Metabolism Regulations under Phosphate Starvation Revealed by Transcriptome Analysis in Synechococcus elongatus PCC 7942
Cited by: 4
Author(s): Xinrui Xu, Xiangshui Miao
Software Mentions: 1
Published: about 6 years ago

10.26508/lsa.202000642

Constitutive CD8 expression drives innate CD8+ T-cell differentiation via induction of iNKT2 cells
Cited by: 5
Author(s): Satoshi Kojo, Michiko Ohno-Oishi, Hisashi Wada, Sebastian Nieke, Wooseok Seo, Sawako Muroi, Ichiro Taniuchi
Software Mentions: 1
Published: over 6 years ago

Projects: pypi: HTSeq

Science Score: 65/100

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Papers Mentioning HTSeq 3,071