Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: HTSeq
https://packages.ecosyste.ms/registries/pypi.org/packages/HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
79 versions
Latest release: over 1 year ago
3 dependent packages
21,995 downloads last month
Papers Mentioning HTSeq 3,071
10.1371/journal.ppat.1009617
The RyfA small RNA regulates oxidative and osmotic stress responses and virulence in uropathogenic Escherichia coliCited by: 17
Author(s): Hicham Bessaiah, Pravil Pokharel, Hamza Loucif, Merve Kulbay, Charles Sasseville, Hajer Habouria, Sébastien Houle, Jacques Bernier, Éric Massé, Julien van Grevenynghe, Charles M. Dozois
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0121828
Genes Expressed in Grapevine Leaves Reveal Latent Wood Infection by the Fungal Pathogen Neofusicoccum parvumCited by: 40
Author(s): Stefan Czemmel, Erin R.-A. Galarneau, Renaud Travadon, Andrew J. McElrone, Grant R. Cramer, Kendra Baumgartner
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.ppat.1009790
Efficient Dicer processing of virus-derived double-stranded RNAs and its modulation by RIG-I-like receptor LGP2Cited by: 14
Author(s): Yuqiang Zhang, Yan Xu, Yunpeng Dai, Zhe Li, Jiaxing Wang, Yang Liu, Yanxin Ren, Hua Wang, Wan-xiang Li, Jinfeng Lü, Shou‐Wei Ding, Li Yang
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.598291
Mechanisms for Development of Ciprofloxacin Resistance in a Clinical Isolate of Pseudomonas aeruginosaCited by: 14
Author(s): Congjuan Xu, Huimin Liu, Xiaolei Pan, Zhenzhen Ma, Dan Wang, Xinxin Zhang, Guangbo Zhu, Fang Bai, Zhihui Cheng, Weihui Wu, Yongxin Jin
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-020-07138-0
Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghumCited by: 18
Author(s): Fuyou Fu, Gezahegn Girma, Tesfaye Mengiste
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2017.00916
Methane Dynamics in a Tropical Serpentinizing Environment: The Santa Elena Ophiolite, Costa RicaCited by: 51
Author(s): Melitza Crespo‐Medina, Katrina I. Twing, Ricardo Sánchez‐Murillo, William J. Brazelton, T. M. McCollom, M. O. Schrenk
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0148677
Global MicroRNA Expression Profiling of Mouse Livers following Ischemia-Reperfusion Injury at Different StagesCited by: 8
Author(s): Weisheng Zheng, Hewei Men, Jing Li, Yu Xing, Bin Wu, Xiqing Li, Junjie Li, Dahong Teng, Yuan Shi, Jiang Li, Jun Pu, Jinzhen Cai
Software Mentions: 1
Published: almost 9 years ago
10.3389/fmicb.2019.02754
The Transcription Factor ArcA Modulates Salmonella’s Metabolism in Response to Neutrophil Hypochlorous Acid-Mediated StressCited by: 8
Author(s): Coral Pardo-Esté, Juan Castro‐Severyn, Gabriel I. Krüger, Carolina Cabezas, Alan C. Briones, Camila Aguirre, Naiyulin Morales, María Soledad Baquedano, Yoelvis Noe Sulbaran, Alejandro A. Hidalgo, Claudio Meneses, Ignacio Poblete‐Castro, Eduardo Castro-Nallar, Miguel A. Valvano, Claudia P. Saavedra
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms21072584
Effective MSTN Gene Knockout by AdV-Delivered CRISPR/Cas9 in Postnatal Chick Leg MuscleCited by: 13
Author(s): Ke Xu, Cheng Xiao Han, Hao Zhou, Jin Mei Ding, Zhong Xu, Ling Yang, Chuan He, Fisayo Akinyemi, Yu Zheng, Chao Qin, Huai Xi Luo, He Meng
Software Mentions: 1
Published: over 4 years ago
10.1111/pbi.13190
<i>Gb<scp>CYP</scp>86A1‐1</i> from <i>Gossypium barbadense</i> positively regulates defence against <i>Verticillium dahliae</i> by cell wall modification and activation of immune pathwaysCited by: 30
Author(s): Guilin Wang, Jingying Xu, Lechen Li, Zhan Guo, Qingxin Si, Guozhong Zhu, Xinyu Wang, Wangzhen Guo
Software Mentions: 1
Published: over 5 years ago
10.1242/bio.024422
<i>Arabidopsis</i>DNA topoisomerase i alpha is required for adaptive response to light and flower developmentCited by: 1
Author(s): E. V. Kupriyanova, E. V. Albert, Aleksandra Bliznina, Polina Mamoshina, Т. А. Ежова
Software Mentions: 1
Published: almost 8 years ago
10.3389/fmicb.2018.00521
The LuxR Regulators PcoR and RfiA Co-regulate Antimicrobial Peptide and Alginate Production in Pseudomonas corrugataCited by: 15
Author(s): Grazia Licciardello, A. Caruso, P. Bella, Rodolpho Gheleri, C. P. Strano, Alice Anzalone, Emmanouil Trantas, Panagiotis F. Sarris, Nalvo F. Almeida, Vittoria Catara
Software Mentions: 1
Published: over 6 years ago
10.3390/ani10112111
Identification and Characterization of Hypothalamic Alternative Splicing Events and Variants in Ovine Fecundity-Related GenesCited by: 2
Author(s): Zhuangbiao Zhang, Jiao Tang, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang, Wenping Hu
Software Mentions: 1
Published: about 4 years ago
10.1186/s13062-018-0204-y
Finite-size effects in transcript sequencing count distribution: its power-law correction necessarily precedes downstream normalization and comparative analysisCited by: 1
Author(s): Wing-Cheong Wong, Hong-kiat Ng, Erwin Tantoso, Richie Soong, Frank Eisenhaber
Software Mentions: 1
Published: almost 7 years ago
10.3389/fmicb.2017.01987
Transcriptomic Changes in Response to Putrescine Production in Metabolically Engineered Corynebacterium glutamicumCited by: 15
Author(s): Zhen Li, Jianzhong Liu
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0179477
Genome-wide identification of gene expression in contrasting maize inbred lines under field drought conditions reveals the significance of transcription factors in drought toleranceCited by: 40
Author(s): Xiaojing Zhang, Xuyang Liu, Dengfeng Zhang, Huaijun Tang, Bo Sun, Chunhui Li, Luyang Hao, Cheng Liu, Yongxiang Li, Yunsu Shi, Xiaoqing Xie, Yifu Song, Tianyu Wang, Li Yu
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.01179
Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogasterCited by: 323
Author(s): Joshua G. Dunn, Catherine K. Foo, Nicolette G Belletier, Elizabeth R. Gavis, Jonathan S. Weissman
Software Mentions: 1
Published: almost 11 years ago
10.1073/pnas.2024846118
Substrate discrimination and quality control require each catalytic activity of TRAMP and the nuclear RNA exosomeCited by: 6
Author(s): Mom Das, Dimitrios Zattas, John C. Zinder, Elizabeth V. Wasmuth, Julien Henri, Christopher D. Lima
Software Mentions: 1
Published: over 3 years ago
10.1073/pnas.2100559118
Transposon-mediated insertional mutagenesis unmasks recessive insecticide resistance in the aphid <i>Myzus persicae</i>Cited by: 15
Author(s): Michela Panini, Olga Chiesa, Bartlomiej J. Troczka, Mark D. Mallott, Gian Carlo Manicardi, Stefano Cassanelli, Filippo Cominelli, Alex Hayward, Emanuele Mazzoni, Chris Bass
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-69639-y
Identification of the novel bacterial blight resistance gene Xa46(t) by mapping and expression analysis of the rice mutant H120Cited by: 32
Author(s): Shen Chen, Congying Wang, Yang Jiao, Bing Chen, Wenjuan Wang, Jing Su, Aiqing Feng, Liexian Zeng, Xiaoyuan Zhu
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2018.00597
Effect of Cinnamaldehyde and Citral Combination on Transcriptional Profile, Growth, Oxidative Damage and Patulin Biosynthesis of Penicillium expansumCited by: 68
Author(s): Yuan Wang, Kewei Feng, Haihua Yang, Zhiwei Zhang, Yahong Yuan, Tianli Yue
Software Mentions: 1
Published: over 6 years ago
10.1016/j.omtn.2018.08.005
Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMDCited by: 39
Author(s): Anna M.L. Coenen-Stass, Helena Sork, Sole Gatto, Caroline Godfrey, Amarjit Bhomra, Kaarel Krjutškov, Jonathan R. Hart, Jakub Orzechowski Westholm, Liz O’Donovan, Andreas Roos, Hanns Lochmüller, Pier Lorenzo Puri, Samir El Andaloussi, Matthew Wood, Thomas C. Roberts
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms21082753
The Expression Profile of Dental Pulp-Derived Stromal Cells Supports Their Limited Capacity to Differentiate into Adipogenic CellsCited by: 8
Author(s): Letícia Fracaro, Alexandra Cristina Senegaglia, Roberto Hirochi Herai, Amanda Leitolis, Lidiane Maria Boldrini Leite, Cármen Lúcia Kuniyoshi Rebelatto, Paul Travers, Paulo Roberto Slud Brofman, Alejandro Correa
Software Mentions: 1
Published: over 4 years ago
10.3389/fphys.2020.00487
Performance and Transcriptional Response of the Green Peach Aphid Myzus persicae to the Restriction of Dietary Amino AcidsCited by: 2
Author(s): Jun Wu, Hao Lan, Zhan-Feng Zhang, He‐He Cao, Tong‐Xian Liu
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms21082686
Understanding the Action of RARγ Agonists on Human Osteochondroma ExplantsCited by: 6
Author(s): Sonia Garcia, Hongying Tian, Yuka Imamura‐Kawasawa, Aidan Fisher, Ashley Cellini, Casey M. Codd, John E. Herzenberg, Joshua M. Abzug, Vincent Y. Ng, Masahiro Iwamoto, Motomi Enomoto‐Iwamoto
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-70986-z
Bifidobacterium adolescentis as a key member of the human gut microbiota in the production of GABACited by: 118
Author(s): Sabrina Duranti, Lorena Ruíz, Gabriele Andrea Lugli, Héctor Tames, Christian Milani, Leonardo Mancabelli, Walter Mancino, Giulia Longhi, Luca Carnevali, Andrea Sgoifo, Abelardo Margollés, Marco Ventura, Patricia Ruas‐Madiedo, Francesca Turroni
Software Mentions: 1
Published: about 4 years ago
10.1007/s13238-019-0637-9
Core pluripotency factors promote glycolysis of human embryonic stem cells by activating GLUT1 enhancerCited by: 19
Author(s): Lili Yu, Kaiyuan Ji, Jian Zhang, Yan-Xia Xu, Ying Ye, Taoyi Mai, Shen Xu, Qian-bing Zhang, Kangde Yao, Yang Xu
Software Mentions: 1
Published: over 5 years ago
10.3389/fphys.2019.00212
Identification of Functional Gene Modules Associated With STAT-Mediated Antiviral Responses to White Spot Syndrome Virus in ShrimpCited by: 8
Author(s): Guijin Zhu, Shihao Li, Jun Wu, Fuhua Li, Xing‐Ming Zhao
Software Mentions: 1
Published: over 5 years ago
10.3389/fphys.2021.650972
Precocious Metamorphosis of Silkworm Larvae Infected by BmNPV in the Latter Half of the Fifth InstarCited by: 3
Author(s): Peng Xu, Meirong Zhang, Xue-Yang Wang, Yueming Wu
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-018-4784-9
Comparative transcriptome analysis of the invasive weed Mikania micrantha with its native congeners provides insights into genetic basis underlying successful invasionCited by: 15
Author(s): Wuxia Guo, Ying Liu, Wei Lun Ng, Pei Chun Liao, Bing Huang, Weixi Li, Chunmei Li, Xianggang Shi, Yelin Huang
Software Mentions: 1
Published: over 6 years ago
10.1186/s12902-021-00845-z
The genomic profiling and MAMLD1 expression in human and canines with Cushing’s diseaseCited by: 1
Author(s): Andrew Wang, Stewart G. Neill, Scott Newman, Marianna A. Tryfonidou, Adriana G. Ioachimescu, Michael R. Rossi, Björn P. Meij, Nelson M. Oyesiku
Software Mentions: 1
Published: about 3 years ago
10.7717/peerj.5997
Analyses of long non-coding RNA and mRNA profiling in the spleen of diarrheic piglets caused by <i>Clostridium perfringens</i> type CCited by: 11
Author(s): Zunqiang Yan, Xiaoyu Huang, Weibo Sun, Qiaoli Yang, Hairen Shi, Tiantuan Jiang, Shenggui Li, Pengfei Wang, Shuangbao Gun
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-020-72482-w
Coordinated analysis of exon and intron data reveals novel differential gene expression changesCited by: 5
Author(s): Hamid R. Eghbalnia, William W. Wilfinger, Karol Mackey, Piotr Chomczyński
Software Mentions: 1
Published: about 4 years ago
10.1007/s10532-020-09917-8
Transcriptomic response of Gordonia sp. strain NB4-1Y when provided with 6:2 fluorotelomer sulfonamidoalkyl betaine or 6:2 fluorotelomer sulfonate as sole sulfur sourceCited by: 6
Author(s): Eric Bottos, Ebtihal Y Alshabib, Dayton M.J. Shaw, Breanne McAmmond, Aarti Sharma, Danae M. Suchan, Andrew D. S. Cameron, Jonathan D. Van Hamme
Software Mentions: 1
Published: about 4 years ago
10.15252/emmm.201607315
<scp>MG</scp>132‐induced progerin clearance is mediated by autophagy activation and splicing regulationCited by: 86
Author(s): Karim Harhouri, Claire Navarro, Danielle Depetris, Marie‐Geneviève Matteï, Xavier Nissan, Pierre Cau, Annachiara De Sandre‐Giovannoli, Nicolas Lévy
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-015-2226-5
Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technologyCited by: 23
Author(s): Lili Wang, Yunxiang Mao, Fanna Kong, Min Cao, Peilong Sun
Software Mentions: 1
Published: almost 9 years ago
10.3390/molecules24183380
Transcriptome and Metabolite Profiling Reveal Novel Insights into Volatile Heterosis in the Tea Plant (Camellia Sinensis)Cited by: 25
Author(s): Yuanrun Zheng, Pengjie Wang, Xuejin Chen, Yun Sun, Chuan Yue, Naixing Ye
Software Mentions: 1
Published: about 5 years ago
10.1186/s13014-018-1075-1
RNA-sequencing in non-small cell lung cancer shows gene downregulation of therapeutic targets in tumor tissue compared to non-malignant lung tissueCited by: 7
Author(s): Kobe Reynders, Els Wauters, Matthieu Moisse, Herbert Decaluwé, Paul De Leyn, Stéphanie Peeters, Maarten Lambrecht, Kristiaan Nackaerts, Christophe Dooms, Wim Janssens, Johan Vansteenkiste, Diether Lambrechts, Dirk De Ruysscher
Software Mentions: 1
Published: over 6 years ago
10.1038/s41419-020-2514-0
circ5615 functions as a ceRNA to promote colorectal cancer progression by upregulating TNKSCited by: 48
Author(s): Zhongliang Ma, Chencheng Han, Wenjia Xia, Siwei Wang, Xiang Li, Panqi Fang, Rong Yin, Lin Xu, Yang Liu
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0126085
ATOH1 Can Regulate the Tumorigenicity of Gastric Cancer Cells by Inducing the Differentiation of Cancer Stem CellsCited by: 14
Author(s): Myoung‐Eun Han, Su‐Jin Baek, Seon‐Young Kim, Chi‐Dug Kang, Sae‐Ock Oh
Software Mentions: 1
Published: over 9 years ago
10.1186/1477-7827-11-3
Changes in the transcriptome of morula-stage bovine embryos caused by heat shock: relationship to developmental acquisition of thermotoleranceCited by: 42
Author(s): Miki Sakatani, L. Bonilla, Kyle B. Dobbs, J. Block, Manabu Ozawa, Savita Shanker, Jiqiang Yao, Peter J. Hansen
Software Mentions: 1
Published: almost 12 years ago
10.15252/embr.201642540
Loss of Nat4 and its associated histone H4 N‐terminal acetylation mediates calorie restriction‐induced longevityCited by: 37
Author(s): Diego Molina‐Serrano, Vassia Schiza, Christis Demosthenous, Emmanouil Stavrou, Jan Oppelt, Dimitris Kyriakou, Wei Liu, Gertrude Zisser, Helmut Bergler, Weiwei Dang, Antonis Kirmizis
Software Mentions: 1
Published: about 8 years ago
10.1186/s12958-020-00659-z
Sphingosine 1-phosphate protects against radiation-induced ovarian injury in female rats—impact on mitochondrial-related genesCited by: 6
Author(s): Jiahui Zhao, Shuyun Zhang, Liesong Chen, Xiaolong Liu, Haihong Su, Lili Chen, Li Yang, Hong Zhang
Software Mentions: 1
Published: about 4 years ago
10.1186/s12864-015-1943-0
Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hensCited by: 76
Author(s): Hong Li, Taian Wang, Chunlin Xu, Dandan Wang, Jingyao Ren, Yanmin Li, Yadong Tian, Yanbin Wang, Yuping Jiao, Xiangtao Kang, Xiaojun Liu
Software Mentions: 1
Published: about 9 years ago
10.3389/fpls.2019.01751
Transcriptome Profiling of the Elongating Internode of Cotton (Gossypium hirsutum L.) Seedlings in Response to Mepiquat ChlorideCited by: 18
Author(s): Li Wang, Ying Yin, Lifeng Wang, Menglei Wang, Miao Zhao, Ye Tian, Yongfang Li
Software Mentions: 1
Published: almost 5 years ago
10.7554/eLife.26287
Steroid hormone induction of temporal gene expression in Drosophila brain neuroblasts generates neuronal and glial diversityCited by: 113
Author(s): Mubarak Hussain Syed, Brandon Mark, Chris Q. Doe
Software Mentions: 1
Published: over 7 years ago
10.3390/ani10091658
Transcriptional Regulator YqeI, Locating at ETT2 Locus, Affects the Pathogenicity of Avian Pathogenic Escherichia coliCited by: 9
Author(s): Mei Xue, Yong Xiao, Dandan Fu, Muhammad Akmal Raheem, Ying Shao, Xiangjun Song, Jing Tu, Ting Xue, Kezong Qi
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2017.01990
Regulation of Fig (Ficus carica L.) Fruit Color: Metabolomic and Transcriptomic Analyses of the Flavonoid Biosynthetic PathwayCited by: 141
Author(s): Ziran Wang, Yuanyuan Cui, Alexander Vainstein, Shangwu Chen, Huiqin Ma
Software Mentions: 1
Published: about 7 years ago
10.3389/fpls.2015.01155
Loss-of-Function Mutations in CsMLO1 Confer Durable Powdery Mildew Resistance in Cucumber (Cucumis sativus L.)Cited by: 54
Author(s): Jingtao Nie, Yunli Wang, Hailong He, Chengjun Guo, Wenying Zhu, Jian Pan, Dandan Li, Hongli Li, Junsong Pan, Run Cai
Software Mentions: 1
Published: almost 9 years ago
10.1111/cpr.12539
Effects of simulated microgravity on the expression profiles of RNA during osteogenic differentiation of human bone marrow mesenchymal stem cellsCited by: 23
Author(s): Liang Li, Cui Zhang, Jianling Chen, Fanfan Hong, Ping Chen, Jinfu Wang
Software Mentions: 1
Published: about 6 years ago
10.3390/ani10030439
Correlation Analysis between AK1 mRNA Expression and Inosine Monophosphate Deposition in Jingyuan ChickensCited by: 8
Author(s): Juan Zhang, Honghong Hu, Tong Mu, Weizhen Wang, Baojun Yu, Ju Guo, Ying Wang, Zihang Zhou, Ye Gu, Zengwen Huang, Zhen Cai, Guosheng Xin
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-15-802
miRNome traits analysis on endothelial lineage cells discloses biomarker potential circulating microRNAs which affect progenitor activitiesCited by: 29
Author(s): Ting‐Yu Chang, Tse‐Shun Huang, Hsei‐Wei Wang, Shing‐Jyh Chang, Hung-Hao Lo, Ya-Lin Chiu, Yen-Li Wang, Chung-Der Hsiao, Chin-Han Tsai, Che-Kai Chan, Ren-In You, Chun‐Hsien Wu, Tsung-Neng Tsai, Shu‐Meng Cheng, Cheng-Chung Cheng
Software Mentions: 1
Published: about 10 years ago
10.7554/eLife.17365
Chromosome-wide mechanisms to decouple gene expression from gene dose during sex-chromosome evolutionCited by: 27
Author(s): B. Wheeler, Erika Anderson, Christian Frøkjær-Jensen, Qian Bian, Erik M. Jørgensen, Barbara J Meyer
Software Mentions: 1
Published: about 8 years ago
10.1210/en.2016-1929
Genome-Wide Identification of Basic Helix–Loop–Helix and NF-1 Motifs Underlying GR Binding Sites in Male Rat HippocampusCited by: 23
Author(s): John R. Pooley, Benjamin P. Flynn, Lars Grøntved, Songjoon Baek, Michael J. Guertin, Yvonne M. Kershaw, Matthew T. Birnie, A. Pellatt, Caroline A Rivers, R. Louis Schiltz, Gordon L. Hager, Stafford L. Lightman, Becky Conway-Campbell
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13104-020-4936-2
Reliability and correlation of mixture cell correction in methylomic and transcriptomic blood dataCited by: 4
Author(s): Boris Chaumette, Oussama Kébir, Patrick A. Dion, Guy A. Rouleau, Marie‐Odile Krebs
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms21114156
Bioinformatics Analyses of the Transcriptome Reveal Ube3a-Dependent Effects on Mitochondrial-Related PathwaysCited by: 7
Author(s): Julia Panov, Lilach Simchi, Yonatan Feuermann, Hanoch Kaphzan
Software Mentions: 1
Published: over 4 years ago
10.1111/mpp.12963
<i>Ralstonia solanacearum</i> promotes pathogenicity by utilizing <scp>l</scp>‐glutamic acid from host plantsCited by: 30
Author(s): Fang‐Fang Shen, Wenfang Yin, Shihao Song, Zhihan Zhang, Peiyi Ye, Yong Zhang, Jianuan Zhou, Fei He, Peng Li, Yinyue Deng
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2016.02012
Transcriptome Analysis of the Cf-12-Mediated Resistance Response to Cladosporium fulvum in TomatoCited by: 17
Author(s): Dongqi Xue, Xiuling Chen, Hong Zhang, Xinfeng Chai, Jingbin Jiang, Xiangyang Xu, Jin-Fu Li
Software Mentions: 1
Published: almost 8 years ago
10.7150/ijms.51126
The effect of CCL5 on the immune cells infiltration and the prognosis of patients with kidney renal clear cell carcinomaCited by: 8
Author(s): Shengjie Bai, Yinying Wu, Yanli Yan, Haojing Kang, Jiangzhou Zhang, Wen Ma, Ying Gao, Baojun Hui, Rong Li, Xiaozhi Zhang, Juan Ren
Software Mentions: 1
Published: almost 5 years ago
10.1186/s13104-019-4671-8
Expression of microRNA in human retinal pigment epithelial cells following infection with Zaire ebolavirusCited by: 8
Author(s): Genevieve F. Oliver, Ayla Valinezhad Orang, Binoy Appukuttan, Shashikanth Marri, Michael Michael, Glenn A. Marsh, Justine R. Smith
Software Mentions: 1
Published: about 5 years ago
10.18632/oncotarget.11836
Quantification of nucleic acid quality in postmortem tissues from a cancer research autopsy programCited by: 16
Author(s): Jun Fan, Raya Khanin, Hitomi Sakamoto, Yi Zhong, Chelsea Michael, Derwin Pena, Breanna M. Javier, Laura D. Wood, Christine A. Iacobuzio–Donahue
Software Mentions: 1
Published: about 8 years ago
10.1186/s12284-021-00509-5
Panicle Apical Abortion 3 Controls Panicle Development and Seed Size in RiceCited by: 7
Author(s): Fang Yang, Xiong Mao, Mingjiang Huang, Zhongcheng Li, Ziyi Wang, Hao Zhu, Rui Chen, Lu Lu, Qinglan Cheng, Yan Wang, Jun Tang, Hui Zhuang, Yunfeng Li
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-77541-w
Physiological and molecular correlates of the screwworm fly attraction to wound and animal odorsCited by: 3
Author(s): Paul V. Hickner, Omprakash Mittapalli, Anjana Subramoniam, Agustin Sagel, Wes Watson, Maxwell J. Scott, Alex P. Arp, Adalberto A Pérez de León, Zainulabeuddin Syed
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-021-07985-5
Morphological characteristics and transcriptome analysis at different anther development stages of the male sterile mutant MS7–2 in Wucai (Brassica campestris L.)Cited by: 4
Author(s): Jian Wang, Yitao Yang, Lei Zhang, Shaoxing Wang, Lingyun Yuan, Guohu Chen, Xiaoyan Tang, Jinfeng Hou, Shidong Zhu, Chenggang Wang
Software Mentions: 1
Published: about 3 years ago
10.1126/sciadv.aay5366
A psychological stressor conveyed by appetite-linked neuronsCited by: 11
Author(s): Eun Jeong Lee, Naresh K. Hanchate, Kunio Kondoh, Ai Phuong Tong, Donghui Kuang, Andrew Spray, Xiaolan Ye, Linda B. Buck
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2021.639132
Membrane Lipids’ Metabolism and Transcriptional Regulation in Maize Roots Under Cold StressCited by: 9
Author(s): Xunchao Zhao, Yulei Wei, Jinjie Zhang, Yang Li, Xinyu Liu, Haiyang Zhang, Wang Shao, Lin He, Zuotong Li, Yifei Zhang, Jingyu Xu
Software Mentions: 1
Published: over 3 years ago
10.1186/s13104-018-3165-4
Increased whole blood FFA2/GPR43 receptor expression is associated with increased 30-day survival in patients with sepsisCited by: 7
Author(s): Zyad J. Carr, Andry Van de Louw, Graham Fehr, Jialiu D. Li, Allen R. Kunselman, Victor Ruiz‐Velasco
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-020-77993-0
Elucidating the regulatory mechanism of Swi1 prion in global transcription and stress responsesCited by: 5
Author(s): Zhiqiang Du, Jeniece Regan, Elizabeth T. Bartom, Wei Wu, Li Zhang, Dustin K. Goncharoff, Liming Li
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijms19082328
Comparative Transcriptomic Analysis of Immune-Related Gene Expression in Duck Embryo Fibroblasts Following Duck Tembusu Virus InfectionCited by: 19
Author(s): Guanliu Yu, Yun Lin, Yi Tang, Youxiang Diao
Software Mentions: 1
Published: over 6 years ago
10.1186/s12864-020-06819-0
Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processingCited by: 9
Author(s): Ilhan Cem Duru, Margarita Andreevskaya, Pia Laine, Tone Mari Rode, Anne Ylinen, Trond Løvdal, Nadav Bar, Peter Crauwels, Christian U. Riedel, Florentina Ionela Bucur, Anca Ioana Nicolau, Petri Auvinen
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms21155547
Deciphering the Novel Role of AtMIN7 in Cuticle Formation and Defense against the Bacterial Pathogen InfectionCited by: 11
Author(s): Zhenzhen Zhao, Xianpeng Yang, Shiyou Lü, Jiangbo Fan, Stephen Opiyo, Piao Yang, Jack Mangold, David Mackey, Ye Xia
Software Mentions: 1
Published: over 4 years ago
10.1186/s12864-017-3824-1
Differences in responses of grass carp to different types of grass carp reovirus (GCRV) and the mechanism of hemorrhage revealed by transcriptome sequencingCited by: 52
Author(s): Libo He, Aidi Zhang, Yongyan Pei, Pengfei Chu, Yongming Li, Rong Huang, Lanjie Liao, Zhu Zhang, Yaping Wang
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-021-92128-9
Establishment of liver tumor cell lines from atherogenic and high fat diet fed hepatitis C virus transgenic miceCited by: 1
Author(s): Takayoshi Shirasaki, Kazuhisa Murai, Masao Honda, Hikari Okada, Yuika Innami, Atsumu Yamada, Tetsuro Shimakami, Kazunori Kawaguchi, Taro Yamashita, Yoshio Sakai
Software Mentions: 1
Published: over 3 years ago
10.1186/s40478-019-0697-3
Downregulation of miR-204 expression defines a highly aggressive subset of Group 3/Group 4 medulloblastomasCited by: 14
Author(s): Harish Shrikrishna Bharambe, Raikamal Paul, Pooja Panwalkar, Rakesh Jalali, Sridhar Epari, Tejpal Gupta, Aliasgar Moiyadi, Prakash Shetty, Sadaf Kazi, Akash Deogharkar, Shalaka Masurkar, Kedar Yogi, Ratika Kunder, Nikhil Gadewal, Atul Goel, Naina Goel, Girish Chinnaswamy, Vijay Ramaswamy, Neelam Shirsat
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-014-0335-y
Distinct transcriptional profiles of ozone stress in soybean (Glycine max) flowers and podsCited by: 10
Author(s): Courtney P. Leisner, Ray Ming, Elizabeth A. Ainsworth
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12870-014-0249-8
Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris)Cited by: 92
Author(s): Ralf Stracke, Daniela Holtgräwe, Jessica Schneider, Boas Pucker, Thomas Rosleff Sörensen, Bernd Weißhaar
Software Mentions: 1
Published: about 10 years ago
10.1038/s41419-021-03764-y
Unraveling the role of microRNA/isomiR network in multiple primary melanoma pathogenesisCited by: 12
Author(s): Emi Dika, Elisabetta Broseghini, Elisa Porcellini, Martina Lambertini, Mattia Riefolo, Giorgio Durante, Phillipe Loher, Roberta Roncarati, Cristian Bassi, Cosimo Misciali, Massimo Negrini, Isidore Rigoutsos, Eric Londin, Annalisa Patrizi
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2020.00272
The Soybean Gene J Contributes to Salt Stress Tolerance by Up-Regulating Salt-Responsive GenesCited by: 27
Author(s): Qun Cheng, Zhuoran Gan, Yanping Wang, Sijia Lü, Zhihong Hou, Haiyang Li, Hao Xiang, Baohui Liu, Fanjiang Kong, Lidong Dong
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-92515-2
Impairing flow-mediated endothelial remodeling reduces extravasation of tumor cellsCited by: 12
Author(s): Gautier Follain, Naël Osmani, Valentin Gensbittel, Nandini Asokan, Annabel Larnicol, Luc Mercier, Maria Jesus Garcia‐Leon, Ignacio Busnelli, Angélique Pichot, Nicodème Paul, Raphaël Carapito, Seiamak Bahram, Olivier Lefèbvre, Jacky G. Goetz
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms22052564
Novel Transcriptome Study and Detection of Metabolic Variations in UV-B-Treated Date Palm (Phoenix dactylifera cv. Khalas)Cited by: 9
Author(s): Mohamed Maher, Hasan Ahmad, Elsayed Nishawy, Yufei Li, Jie Luo
Software Mentions: 1
Published: over 3 years ago
10.1186/s12870-020-02425-0
Transcriptomic analysis reveals mechanism of light-sensitive albinism in tea plant Camellia sinensis ‘Huangjinju’Cited by: 20
Author(s): Xinfeng Jiang, Hua Zhao, Fei Guo, Xuping Shi, Chuan Ye, Ping Yang, Benying Liu, Dejiang Ni
Software Mentions: 1
Published: over 4 years ago
10.1038/s41419-018-0335-1
The oncogene Etv5 promotes MET in somatic reprogramming and orchestrates epiblast/primitive endoderm specification during mESCs differentiationCited by: 11
Author(s): Jinglong Zhang, Hongxia Cao, Jing Xie, Chunxiao Fan, Youlong Xie, Xin He, Mingzhi Liao, Shiqiang Zhang, Huayan Wang
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12870-019-2010-9
GhFAD2–3 is required for anther development in Gossypium hirsutumCited by: 9
Author(s): Liping Feng, Lihong Ma, Youwu Wang, Yanjun Li, Xinyu Zhang, Fei Xue, Xiaoqin Nie, Qian-Hao Zhu, Jie Sun
Software Mentions: 1
Published: about 5 years ago
10.1186/s12870-018-1449-4
Transcriptome analysis of radish sprouts hypocotyls reveals the regulatory role of hydrogen-rich water in anthocyanin biosynthesis under UV-ACited by: 24
Author(s): Xiaoyan Zhang, Nana Su, Jia Li, Jing Tian, Han Li, Huang Lei, Zhenguo Shen, Jin Chen
Software Mentions: 1
Published: about 6 years ago
10.1186/s12864-018-4866-8
SNP hot-spots in the clam parasite QPXCited by: 2
Author(s): Sleiman Bassim, Bassem Allam
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-021-93506-z
Effects of long-term norepinephrine treatment on normal immortalized ovarian and fallopian tube cellsCited by: 1
Author(s): Sweta Dash, Sean Yoder, Tania Mesa, Andrew T. Smith, Ling Cen, Steven A. Eschrich, Guillermo N. Armaiz-Peña, Alvaro N.A. Monteiro
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pgen.1003854
Xbp1 Directs Global Repression of Budding Yeast Transcription during the Transition to Quiescence and Is Important for the Longevity and Reversibility of the Quiescent StateCited by: 65
Author(s): Shawna Miles, Lihong Li, Jerry Davison, Linda Breeden
Software Mentions: 1
Published: about 11 years ago
10.1038/s41598-021-93904-3
Single cell RNA-seq reveals genes vital to in vitro fertilized embryos and parthenotes in pigsCited by: 14
Author(s): Zhiqiang Du, Hao Liang, Xiaoman Liu, Yunhua Liu, Chonglong Wang, Yang Ch
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2021.685189
Transcriptome-Wide Analysis of RNA m6A Methylation and Gene Expression Changes Among Two Arabidopsis Ecotypes and Their Reciprocal HybridsCited by: 11
Author(s): Zhihui Xu, Xiaobo Shi, Mengmei Bao, Xiaoqian Song, Yuxia Zhang, Haiyan Wang, Hairong Xie, Fei Mao, Shuai Wang, Hongmei Jin, Suomeng Dong, Feng Zhang, Zhe Wu, Yufeng Wu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41368-020-0085-7
Berberine mediates root remodeling in an immature tooth with apical periodontitis by regulating stem cells from apical papilla differentiationCited by: 16
Author(s): Yujia Cui, Jing Xie, Yujie Fu, Chuwen Li, Liwei Zheng, Dingming Huang, Changchun Zhou, Jing Sun, Xuedong Zhou
Software Mentions: 1
Published: over 4 years ago
10.1038/s41597-019-0185-4
Longitudinal RNA-Seq analysis of acute and chronic neurogenic skeletal muscle atrophyCited by: 14
Author(s): Jeffrey T. Ehmsen, Riki Kawaguchi, Ruifa Mi, Giovanni Coppola, Ahmet Höke
Software Mentions: 1
Published: about 5 years ago
10.3390/cancers12102963
CTEN Induces Tumour Cell Invasion and Survival and Is Prognostic in Radiotherapy-Treated Head and Neck CancerCited by: 5
Author(s): Jason C. Fleming, Jeongmin Woo, Karwan A. Moutasim, Christopher J. Hanley, Steven J. Frampton, Oliver Wood, Matthew J. Ward, Christopher H. Woelk, Christian Ottensmeier, Sassan Hafizi, Dae Kim, Gareth J. Thomas
Software Mentions: 1
Published: about 4 years ago
10.1186/s12864-015-1427-2
Global gene expression patterns of grass carp following compensatory growthCited by: 36
Author(s): Libo He, Yongyan Pei, Yao Jiang, Yongming Li, Lanjie Liao, Zhu Zhang, Yaping Wang
Software Mentions: 1
Published: over 9 years ago
10.3390/cancers12071737
CXCR4 Inhibition Enhances Efficacy of FLT3 Inhibitors in FLT3-Mutated AML Augmented by Suppressed TGF-β SignalingCited by: 6
Author(s): Bo-Reum Kim, Seung‐Hyun Jung, A-Reum Han, Gyeong Sin Park, Hee-Je Kim, Bin Yuan, Venkata Lokesh Battula, Michael Andreeff, Marina Konopleva, Yeun‐Jun Chung, Byung-Sik Cho
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2019.00627
PRC2-Mediated H3K27me3 Contributes to Transcriptional Regulation of FIT-Dependent Iron Deficiency ResponseCited by: 21
Author(s): Emily Y. Park, Kaitlyn M. Tsuyuki, Fengling Hu, Joohyun Lee, Jeeyon Jeong
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2020.580883
Proper Glyphosate Application at Post-anthesis Lowers Grain Moisture Content at Harvest and Reallocates Non-structural Carbohydrates in MaizeCited by: 7
Author(s): Linmao Zhao, Liuyong Xie, Jingli Huang, Yingchun Su, Chunqing Zhang
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2017.02001
RNA-Seq Profiling Shows Divergent Gene Expression Patterns in Arabidopsis Grown under Different DensitiesCited by: 10
Author(s): Di Guo, Xiaoming Song, Min Yuan, Zhenyi Wang, Weina Ge, Li Wang, Jinpeng Wang, Xiyin Wang
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0152425
FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-γ Receptors in Human B CellsCited by: 11
Author(s): Xinxia Peng, Shuying S. Li, Peter B. Gilbert, Daniel E. Geraghty, Michael G. Katze
Software Mentions: 1
Published: over 8 years ago
10.3390/ijms20040911
Comparative Transcriptome Analysis of the Pinewood Nematode Bursaphelenchus xylophilus Reveals the Molecular Mechanism Underlying Its Defense Response to Host-Derived α-pineneCited by: 26
Author(s): Yongxia Li, Fanli Meng, Xun Deng, Xuan Wang, Yuqian Feng, Wei Zhang, Long Pan, Xingyao Zhang
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2019.00112
Characterization of Non-heading Mutation in Heading Chinese Cabbage (Brassica rapa L. ssp. pekinensis)Cited by: 17
Author(s): Jingrui Li, Xiaomeng Zhang, Yin Lu, Dongxiao Feng, Aiqin Gu, Shan Wang, Fang Wu, Xiangjie Su, Xueping Chen, Xing Li, Mengyang Liu, Shuangxi Fan, Dingqing Feng, Sushan Luo, Shuxin Xuan, Yanhua Wang, Shuxing Shen, Zhao Jian-jun
Software Mentions: 1
Published: almost 6 years ago