pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.1038/s41368-020-0085-7

Berberine mediates root remodeling in an immature tooth with apical periodontitis by regulating stem cells from apical papilla differentiation
Cited by: 16
Author(s): Yujia Cui, Jing Xie, Yujie Fu, Chuwen Li, Liwei Zheng, Dingming Huang, Changchun Zhou, Jing Sun, Xuedong Zhou
Software Mentions: 1
Published: over 4 years ago

10.1186/s13045-020-00857-7

RETRACTED ARTICLE: HNF4A-AS1/hnRNPU/CTCF axis as a therapeutic target for aerobic glycolysis and neuroblastoma progression
Cited by: 42
Author(s): Huajie Song, Dan Li, Xiaojing Wang, Erhu Fang, Feng Yang, Anpei Hu, Jianqun Wang, Yanhua Guo, Yang Liu, Hongjun Li, Yajun Chen, Kai Huang, Liduan Zheng, Qiangsong Tong
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-5986-5

Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines
Cited by: 27
Author(s): Yuan Qin, Hongguang Sun, Pengbo Hao, Hantao Wang, Congcong Wang, Liang Ma, Hengling Wei, Shuang Yu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000808

Klf5 down-regulation induces vascular senescence through eIF5a depletion and mitochondrial fission
Cited by: 41
Author(s): Dong Ma, Bin Zheng, Heliang Liu, Yongbo Zhao, Xiao Liu, Xinhua Zhang, Qiang Li, Wanying Shi, Toru Suzuki, Jin‐Kun Wen
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pbio.2006146

The histone methyltransferase G9a regulates tolerance to oxidative stress–induced energy consumption
Cited by: 18
Author(s): Human Riahi, Carlijn Brekelmans, Sarah Foriel, Sarah H. Merkling, Taylor A. Lyons, Pavel M. Itskov, Tjitske Kleefstra, Carlos Ribeiro, Ronald P. van Rij, Jamie M. Kramer, Annette Schenck
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph18168615

Transcriptional Analysis of Microcystis aeruginosa Co-Cultured with Algicidal Bacteria Brevibacillus laterosporus
Cited by: 6
Author(s): Yulei Zhang, D. Chen, Ning Zhang, Feng Liu, Xiaoxia Luo, Qianru Li, Changling Li, Xinyu Huang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.3000734

Targeting miR-27a/VE-cadherin interactions rescues cerebral cavernous malformations in mice
Cited by: 23
Author(s): Jia Li, Yang Zhao, Jaesung P. Choi, Ka Ka Ting, Paul Coleman, Jinbiao Chen, Victoria C. Cogger, Li Wan, Zhong‐Song Shi, Thorleif Møller, Xiangjian Zheng, Mathew A. Vadas, Jennifer R. Gamble
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21155547

Deciphering the Novel Role of AtMIN7 in Cuticle Formation and Defense against the Bacterial Pathogen Infection
Cited by: 11
Author(s): Zhenzhen Zhao, Xianpeng Yang, Shiyou Lü, Jiangbo Fan, Stephen Opiyo, Piao Yang, Jack Mangold, David Mackey, Ye Xia
Software Mentions: 1
Published: over 4 years ago

10.3390/plants9081016

The Existence and Localization of Nuclear snoRNAs in Arabidopsis thaliana Revisited
Cited by: 11
Author(s): Deniz Streit, Thiruvenkadam Shanmugam, Asen Garbelyanski, Stefan Simm, Enrico Schleiff
Software Mentions: 1
Published: over 4 years ago

10.1186/s12915-016-0234-9

Detection of pup odors by non-canonical adult vomeronasal neurons expressing an odorant receptor gene is influenced by sex and parenting status
Cited by: 17
Author(s): Thiago S. Nakahara, Leonardo Minete Cardozo, Ximena Ibarra-Soria, Andrew Daniel Bard, Vinicius Miessler de Andrade Carvalho, Guilherme Ziegler Trintinalia, Darren W. Logan, Fábio Papes
Software Mentions: 1
Published: almost 9 years ago

10.3390/plants9060788

Generation of High Yielding and Fragrant Rice (Oryza sativa L.) Lines by CRISPR/Cas9 Targeted Mutagenesis of Three Homoeologs of Cytochrome P450 Gene Family and OsBADH2 and Transcriptome and Proteome Profiling of Revealed Changes Triggered by Mutations
Cited by: 52
Author(s): Babar Usman, Gul Nawaz, Neng Zhao, Yao-Guang Liu, Rongbai Li
Software Mentions: 1
Published: over 4 years ago

10.3390/plants9030327

Genome-Wide Identification and Expression Analysis of Polygalacturonase Gene Family in Kiwifruit (Actinidia chinensis) during Fruit Softening
Cited by: 19
Author(s): Wenjun Huang, Meiyan Chen, Tingting Zhao, Han Fu-gen, Qi Zhang, Xiaoli Liu, Changying Jiang, Caihong Zhong
Software Mentions: 1
Published: over 4 years ago

10.1038/s41388-019-1116-8

Systematic characterization of chromatin modifying enzymes identifies KDM3B as a critical regulator in castration resistant prostate cancer
Cited by: 23
Author(s): Hilal Saraç, Tunç Morova, Elisabete Pires, James McCullagh, Anıl Kaplan, Ahmet Cingöz, Tugba Bagcı-Önder, Tamer T. Önder, Akane Kawamura, Nathan A. Lack
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-016-3307-9

The Drosophila transcriptional network is structured by microbiota
Cited by: 43
Author(s): A. Dobson, John M. Chaston, Angela E. Douglas
Software Mentions: 1
Published: almost 8 years ago

10.1002/advs.202004555

Trojan Horse Delivery of 4,4′‐Dimethoxychalcone for Parkinsonian Neuroprotection
Cited by: 25
Author(s): Wenlong Zhang, Huaqing Chen, Liuyan Ding, Junhua Gong, Mengran Zhang, Wenyuan Guo, Pingyi Xu, Shiying Li, Yunlong Zhang
Software Mentions: 1
Published: over 3 years ago

10.3390/plants10030466

Fast and Efficient 5′P Degradome Library Preparation for Analysis of Co-Translational Decay in Arabidopsis
Cited by: 5
Author(s): Marie-Christine Carpentier, Cécile Bousquet‐Antonelli, Rémy Merret
Software Mentions: 1
Published: over 3 years ago

10.3390/plants10071343

Fine Mapping of a Major Pleiotropic QTL Associated with Sesamin and Sesamolin Variation in Sesame (Sesamum indicum L.)
Cited by: 12
Author(s): Fangtao Xu, Rong Zhou, Senouwa Segla Koffi Dossou, Shengnan Song, Linhai Wang
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21197326

Vitamin D as a Primer for Oncolytic Viral Therapy in Colon Cancer Models
Cited by: 3
Author(s): Sangin Kim, Shyambabu Chaurasiya, Anthony K. Park, Seonah Kang, Jianming Lü, Yanghee Woo, Hongwei Yin, Zhirong Yin, Yuman Fong, Susanne G. Warner
Software Mentions: 1
Published: about 4 years ago

10.3390/plants9020240

Genome-Wide Analysis of Gene Expression Provides New Insights into Waterlogging Responses in Barley (Hordeum vulgare L.)
Cited by: 38
Author(s): Ana Borrego-Benjumea, Adam Carter, James R. Tucker, Zhen Yao, Wayne Xu, Ana Badea
Software Mentions: 1
Published: almost 5 years ago

10.3390/plants9121710

Engineered Ripening-Specific Accumulation of Polyamines Spermidine and Spermine in Tomato Fruit Upregulates Clustered C/D Box snoRNA Gene Transcripts in Concert with Ribosomal RNA Biogenesis in the Red Ripe Fruit
Cited by: 5
Author(s): Vijaya Shukla, Tahira Fatima, Ravinder K. Goyal, Avtar K. Handa, Autar K. Mattoo
Software Mentions: 1
Published: almost 4 years ago

10.3390/plants9040488

Triacontanol Promotes the Fruit Development and Retards Fruit Senescence in Strawberry: A Transcriptome Analysis
Cited by: 12
Author(s): Qi Pang, Xueqin Chen, Jinhua Lv, Teng Li, Jinggui Fang, Haifeng Jia
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-018-4681-2

Effect of early calf-hood nutrition on the transcriptomic profile of subcutaneous adipose tissue in Holstein-Friesian bulls
Cited by: 9
Author(s): A.M. English, Sinéad M. Waters, Paul Cormican, C.J. Byrne, Seán Fair, David A. Kenny
Software Mentions: 1
Published: over 6 years ago

10.3390/plants7020035

Seed Dormancy Involves a Transcriptional Program That Supports Early Plastid Functionality during Imbibition
Cited by: 14
Author(s): Alberto Gianinetti, Franca Finocchiaro, Paolo Bagnaresi, Antonella Zechini, Primetta Faccioli, Luigi Cattivelli, Giampiero Valè, Chiara Biselli
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21197296

Transcriptomic Analysis and Specific Expression of Transcription Factor Genes in the Root and Sporophyll of Dryopteris fragrans (L.) Schott
Cited by: 5
Author(s): Lingling Chen, Dongrui Zhang, Chunhua Song, Hemeng Wang, Xun Tang, Ying Chang
Software Mentions: 1
Published: about 4 years ago

10.1002/pld3.282

Structure‐function analysis of the maize bulliform cell cuticle and its potential role in dehydration and leaf rolling
Cited by: 21
Author(s): Susanne Matschi, Miguel Vasquez, Richard Bourgault, Paul Steinbach, James Chamness, Nicholas Kaczmar, Michael A. Gore, Isabel Molina, Laurie G. Smith
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21218180

Revealing Alteration in the Hepatic Glucose Metabolism of Genetically Improved Carp, Jayanti Rohu Labeo rohita Fed a High Carbohydrate Diet Using Transcriptome Sequencing
Cited by: 4
Author(s): Kiran D. Rasal, Mir Asif Iquebal, Sangita Dixit, Manohar Vasam, Mustafa Raza, Lakshman Sahoo, Sarika Jaiswal, Samiran Nandi, Kanta Das Mahapatra, Avinash Rasal, Uday Kumar Udit, Prem Kumar Meher, Khuntia Murmu, U. B. Angadi, Anil Rai, Dinesh Kumar, Jitendra Kumar Sundaray
Software Mentions: 1
Published: about 4 years ago

10.1111/pbi.13190

Gb<scp>CYP</scp>86A1‐1 from Gossypium barbadense positively regulates defence against Verticillium dahliae by cell wall modification and activation of immune pathways
Cited by: 30
Author(s): Guilin Wang, Jingying Xu, Lechen Li, Zhan Guo, Qingxin Si, Guozhong Zhu, Xinyu Wang, Wangzhen Guo
Software Mentions: 1
Published: over 5 years ago

10.14814/phy2.14832

A hierarchical dynamic model used for investigating feed efficiency and its relationship with hepatic gene expression in APOE*3‐Leiden.CETP mice
Cited by: 2
Author(s): Xiang Zhang, Yared Paalvast, Yanan Wang, Patrick C.N. Rensen, Albert K. Groen
Software Mentions: 1
Published: over 3 years ago

10.3390/pharmaceutics13040510

Pre-Emptive Priming of Human Skin Improves Cutaneous Scarring and Is Superior to Immediate and Delayed Topical Anti-Scarring Treatment Post-Wounding: A Double-Blind Randomised Placebo-Controlled Clinical Trial
Cited by: 16
Author(s): Sarir Uddin, Traci A. Wilgus, D.D. McGeorge, Ardeshir Bayat
Software Mentions: 1
Published: over 3 years ago

10.1186/s12915-021-01142-w

Competition-based screening helps to secure the evolutionary stability of a defensive microbiome
Cited by: 8
Author(s): Sarah F. Worsley, Tabitha M. Innocent, Neil A. Holmes, Mahmoud M. Al‐Bassam, Morten Schiøtt, Barrie Wilkinson, J. Colin Murrell, Jacobus J. Boomsma, Douglas W. Yu, Matthew I. Hutchings
Software Mentions: 1
Published: about 3 years ago

10.7717/peerj.11567

Vibrio alginolyticus influences quorum sensing-controlled phenotypes of acute hepatopancreatic necrosis disease-causing Vibrio parahaemolyticus
Cited by: 9
Author(s): Panida Paopradit, Natta Tansila, Komwit Surachat, Pimonsri Mittraparp‐arthorn
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.6519

Transcriptome analysis of osmotic-responsive genes in ABA-dependent and -independent pathways in wheat (Triticum aestivum L.) roots
Cited by: 15
Author(s): Chunxi Li, Wenli Zhang, Meng Yuan, Lina Jiang, Bo Sun, Daijing Zhang, Yun Shao, Anqi Liu, Xueqing Liu, Jianhui Ma
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.26287

Steroid hormone induction of temporal gene expression in Drosophila brain neuroblasts generates neuronal and glial diversity
Cited by: 113
Author(s): Mubarak Hussain Syed, Brandon Mark, Chris Q. Doe
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.34961

Variations in HLA-B cell surface expression, half-life and extracellular antigen receptivity
Cited by: 36
Author(s): Brogan Yarzabek, Anita Zaitouna, Edwin Olson, Gayathri N. Silva, Jie Geng, Aviva Geretz, Rasmi Thomas, Sujatha Krishnakumar, Daniel Ramón, Malini Raghavan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-015-2226-5

Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology
Cited by: 23
Author(s): Lili Wang, Yunxiang Mao, Fanna Kong, Min Cao, Peilong Sun
Software Mentions: 1
Published: almost 9 years ago

10.7717/peerj.10953

Photoperiod induced the pituitary differential regulation of lncRNAs and mRNAs related to reproduction in sheep
Cited by: 13
Author(s): Xiaoyun He, Tao Lin, Yingjie Zhong, Ran Di, Qing Xia, Xiangyu Wang, Xiaofei Guo, Shangquan Gan, Xiaosheng Zhang, Jinlong Zhang, Qiuyue Liu, Mingxing Chu
Software Mentions: 1
Published: over 3 years ago

10.7717/peerj.7199

The effects of resveratrol feeding and exercise training on the skeletal muscle function and transcriptome of aged rats
Cited by: 11
Author(s): Jing Zhou, Zhiyin Liao, Jia Jia, Jinliang Chen, Qian Xiao
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.9581

Identification of olfactory genes of a forensically important blow fly, Aldrichina grahami (Diptera: Calliphoridae)
Cited by: 7
Author(s): Han Han, Zhuoying Liu, Fanming Meng, Yangshuai Jiang, Jifeng Cai
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.3588

Shot-gun proteome and transcriptome mapping of the jujube floral organ and identification of a pollen-specific S-locus F-box gene
Cited by: 8
Author(s): Ruihong Chen, Guoliang Chen, Jian Huang
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.7595

Comparative transcriptome analysis of panicle development under heat stress in two rice (Oryza sativa L.) cultivars differing in heat tolerance
Cited by: 14
Author(s): Yaliang Wang, Yikai Zhang, Qiang Zhang, Yongtao Cui, Jing Xiang, Huizhe Chen, Hu Guohui, Yanhua Chen, Xiaodan Wang, Dan Zhu, Yuping Zhang
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.6314

EGFR deficiency leads to impaired self-renewal and pluripotency of mouse embryonic stem cells
Cited by: 10
Author(s): Miaoying Yu, Yinghui Wei, Kui Xu, Shasha Li, Lei Ma, Yangli Pei, Yougen Hu, Zhiguo Liu, Xue Zhang, Bingyuan Wang, Yulian Mu, Kui Li
Software Mentions: 1
Published: almost 6 years ago

10.7717/peerj.5997

Analyses of long non-coding RNA and mRNA profiling in the spleen of diarrheic piglets caused by Clostridium perfringens type C
Cited by: 11
Author(s): Zunqiang Yan, Xiaoyu Huang, Weibo Sun, Qiaoli Yang, Hairen Shi, Tiantuan Jiang, Shenggui Li, Pengfei Wang, Shuangbao Gun
Software Mentions: 1
Published: almost 6 years ago

10.3390/pathogens9110956

PXO_RS20535, Encoding a Novel Response Regulator, Is Required for Chemotactic Motility, Biofilm Formation, and Tolerance to Oxidative Stress in Xanthomonas oryzae pv. oryzae
Cited by: 7
Author(s): Abdulwahab Antar, Mi-Ae Lee, Youngchul Yoo, Man-Ho Cho, Sang‐Won Lee
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2105-16-S15-P1

Synaptic plasticity in infralimbic cortex mediates socially-acquired nicotine self-administration
Cited by: 17
Author(s): Hao Chen, Tengfei Wang, Wenyan Han
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.41497

ASH1-catalyzed H3K36 methylation drives gene repression and marks H3K27me2/3-competent chromatin
Cited by: 47
Author(s): Vincent T. Bicocca, Tereza Ormsby, Keyur K. Adhvaryu, Shinji Honda, Eric U. Selker
Software Mentions: 1
Published: almost 6 years ago

10.3390/pathogens10060676

Genetic and Transcriptomic Variations for Amoxicillin Resistance in Helicobacter pylori under Cryopreservation
Cited by: 2
Author(s): Xing Han, Yiyao Zhang, Lihua He, Ruyue Fan, Lu Sun, Dongjie Fan, Yanan Gong, Xiaoli Chen, Yuanhai You, Fei Zhao, Maojun Zhang, Jianzhong Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/s13071-020-4004-8

Oncomelania hupensis retains its ability to transmit Schistosoma japonicum 13 years after migration from permissive to non-permissive areas
Cited by: 3
Author(s): Chengsong Sun, Fang Luo, Xin Liu, Feng Miao, Wei Hu
Software Mentions: 1
Published: over 4 years ago

10.3390/v12040383

Next-Generation Sequencing Analysis of Cellular Response to Influenza B Virus Infection
Cited by: 3
Author(s): Zizhang Sheng, Can Huang, Runxia Liu, Yicheng Guo, Zhilin Ran, Feng Li, Dan Dan Wang
Software Mentions: 1
Published: over 4 years ago

10.1080/21505594.2021.1948276

Transcriptome analysis of porcine PBMCs reveals lipopolysaccharide-induced immunomodulatory responses and crosstalk of immune and glucocorticoid receptor signaling
Cited by: 7
Author(s): Zhiwei Li, Nares Trakooljul, Frieder Hadlich, Siriluck Ponsuksili, Klaus Wimmers, Eduard Muráni
Software Mentions: 1
Published: over 3 years ago

10.1186/s13567-020-00746-4

Marek’s disease vaccines-induced differential expression of known and novel microRNAs in primary lymphoid organ bursae of White Leghorn
Cited by: 7
Author(s): Lei Zhang, Chen Zhu, Mohammad Heidari, Kunzhe Dong, Shuang Chang, Qingmei Xie, Huanmin Zhang
Software Mentions: 1
Published: over 4 years ago

10.1016/j.omtn.2018.08.005

Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD
Cited by: 39
Author(s): Anna M.L. Coenen-Stass, Helena Sork, Sole Gatto, Caroline Godfrey, Amarjit Bhomra, Kaarel Krjutškov, Jonathan R. Hart, Jakub Orzechowski Westholm, Liz O’Donovan, Andreas Roos, Hanns Lochmüller, Pier Lorenzo Puri, Samir El Andaloussi, Matthew Wood, Thomas C. Roberts
Software Mentions: 1
Published: almost 6 years ago

10.1111/mpp.12963

Ralstonia solanacearum promotes pathogenicity by utilizing <scp>l</scp>‐glutamic acid from host plants
Cited by: 30
Author(s): Fang‐Fang Shen, Wenfang Yin, Shihao Song, Zhihan Zhang, Peiyi Ye, Yong Zhang, Jianuan Zhou, Fei He, Peng Li, Yinyue Deng
Software Mentions: 1
Published: over 4 years ago

10.1002/1878-0261.12183

Biomarker potential ofST6GALNAC3andZNF660promoter hypermethylation in prostate cancer tissue and liquid biopsies
Cited by: 46
Author(s): Christa Haldrup, Anne L. Pedersen, Nadia Øgaard, Siri H. Strand, Søren Høyer, Michael Borre, Torben F. Ørntoft, Karina D. Sørensen
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules25204857

Antibacterial Efficacy and Mechanism of Mannosylerythritol Lipids-A on Listeria monocytogenes
Cited by: 12
Author(s): Xiayu Liu, Qin Shu, Qihe Chen, Xinxin Pang, Yansha Wu, Wanyi Zhou, Yan‐Dong Wu, Jianrui Niu, Xinglin Zhang
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules23112995

Insecticidal Activities of Chloramphenicol Derivatives Isolated from a Marine Alga-Derived Endophytic Fungus, Acremonium vitellinum, against the Cotton Bollworm, Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae)
Cited by: 15
Author(s): Dan Chen, Peng Zhang, Tong Liu, Xiufang Wang, Zhaoxia Li, Wei Li, Fenglong Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules23030584

Melatonin Improves Heat Tolerance in Kiwifruit Seedlings through Promoting Antioxidant Enzymatic Activity and Glutathione S-Transferase Transcription
Cited by: 86
Author(s): Dong Liang, Fan Gao, Zhiyou Ni, Lijin Lin, Qunxian Deng, Yi Tang, Xun Wang, Xian Luo
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.56935

Specific labeling of synaptic schwann cells reveals unique cellular and molecular features
Cited by: 43
Author(s): Ryan Castro, Thomas Taetzsch, Sydney K. Vaughan, Kerilyn N. Godbe, John C. Chappell, Robert E. Settlage, Gregorio Valdez
Software Mentions: 1
Published: over 4 years ago

10.1186/s40478-019-0697-3

Downregulation of miR-204 expression defines a highly aggressive subset of Group 3/Group 4 medulloblastomas
Cited by: 14
Author(s): Harish Shrikrishna Bharambe, Raikamal Paul, Pooja Panwalkar, Rakesh Jalali, Sridhar Epari, Tejpal Gupta, Aliasgar Moiyadi, Prakash Shetty, Sadaf Kazi, Akash Deogharkar, Shalaka Masurkar, Kedar Yogi, Ratika Kunder, Nikhil Gadewal, Atul Goel, Naina Goel, Girish Chinnaswamy, Vijay Ramaswamy, Neelam Shirsat
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules24183380

Transcriptome and Metabolite Profiling Reveal Novel Insights into Volatile Heterosis in the Tea Plant (Camellia Sinensis)
Cited by: 25
Author(s): Yuanrun Zheng, Pengjie Wang, Xuejin Chen, Yun Sun, Chuan Yue, Naixing Ye
Software Mentions: 1
Published: about 5 years ago

10.1111/mec.15752

Gene expression during larval caste determination and differentiation in intermediately eusocial bumblebees, and a comparative analysis with advanced eusocial honeybees
Cited by: 5
Author(s): David H. Collins, Anna Wirén, Marjorie Labédan, Michael G. Smith, D. C. Prince, Irina Mohorianu, Tamàs Dalmay, Andrew F. G. Bourke
Software Mentions: 1
Published: almost 4 years ago

10.1186/1755-8166-7-S1-P87

Defining the effects of prematurity on the lymphocyte transcriptome
Cited by: 0
Author(s): Soumyaroop Bhattacharya, Ravi S. Misra, Heidi Hyuck, Christopher Slaunwhite, Shannon Castiglione, Deanna Maffett, Anne Marie Reynolds, Gloria S. Pryhuber, Thomas J. Mariani
Software Mentions: 1
Published: almost 11 years ago

10.18632/aging.103901

Identification of a hippocampal lncRNA-regulating network in cognitive dysfunction caused by chronic cerebral hypoperfusion
Cited by: 4
Author(s): Zhiliang Yao, Jing Wang, Bing-Zhen Shen, Yutong Li, Xiaoli Yao, Shaofeng Zhang, Yong Zhang, Jichang Hu, Yanchun Xie
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.19887

Neuroendocrine modulation sustains the C. elegans forward motor state
Cited by: 42
Author(s): Manho Lim, Jyothsna Chitturi, Valeriya Laskova, Jun Meng, Daniel Findeis, Anne Wiekenberg, Ben Mulcahy, Linjiao Luo, Yan Li, Yangning Lu, Wesley Hung, Yixin Qu, Chi-Yip Ho, Douglas Holmyard, Ni Ji, Rebecca McWhirter, Aravinthan D. T. Samuel, David M. Miller, Ralf Schnabel, John A. Calarco, Mei Zhen
Software Mentions: 1
Published: about 8 years ago

10.1093/molbev/msx205

The Influence of Polyploidy on the Evolution of Yeast Grown in a Sub-Optimal Carbon Source
Cited by: 31
Author(s): Amber Lynne Scott, Phillip A. Richmond, Robin Dowell, Anna Selmecki
Software Mentions: 1
Published: over 7 years ago

10.1186/s13229-015-0008-1

Fmrp targets or not: long, highly brain-expressed genes tend to be implicated in autism and brain disorders
Cited by: 30
Author(s): Rebecca Ouwenga, Joseph D. Dougherty
Software Mentions: 1
Published: almost 10 years ago

10.3390/microorganisms8060858

Interaction of Varroa destructor and Sublethal Clothianidin Doses during the Larval Stage on Subsequent Adult Honey Bee (Apis mellifera L.) Health, Cellular Immunity, Deformed Wing Virus Levels and Differential Gene Expression
Cited by: 8
Author(s): Nuria Morfin, Paul H. Goodwin, Ernesto Guzmán-Novoa
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms8020211

The Dysbiosis of Gut Microbiota Caused by Low-Dose Cadmium Aggravate the Injury of Mice Liver through Increasing Intestinal Permeability
Cited by: 34
Author(s): Yehao Liu, Yuhui Li, Yuhong Xia, Kaiyong Liu, Lingling Ren, Yan-Li Ji
Software Mentions: 1
Published: almost 5 years ago

10.3390/microorganisms9050970

Caenorhabditis elegans Extracts Stimulate IAA Biosynthesis in Arthrobacter pascens ZZ21 via the Indole-3-pyruvic Acid Pathway
Cited by: 3
Author(s): Mengsha Li, Teng Li, Ming Zhou, Yexin Zhao, Jinming Xu, Feng Hu, Huixin Li
Software Mentions: 1
Published: over 3 years ago

10.1186/s40168-021-01098-7

Breed differences in the expression levels of gga-miR-222a in laying hens influenced H2S production by regulating methionine synthase genes in gut bacteria
Cited by: 5
Author(s): Si-Cheng Xing, Chun-Bo Huang, Ruizhu Wu, Yiwen Yang, Jingyuan Chen, Jiandui Mi, Yinbao Wu, Yan Wang, Xindi Liao
Software Mentions: 1
Published: about 3 years ago

10.1186/s40168-017-0386-z

Influenza A virus infection impacts systemic microbiota dynamics and causes quantitative enteric dysbiosis
Cited by: 173
Author(s): Soner Yildiz, Béryl Mazel-Sanchez, Matheswaran Kandasamy, Balaji Manicassamy, Mirco Schmolke
Software Mentions: 1
Published: almost 7 years ago

10.1128/MRA.00618-20

Transcriptome Sequencing Data of Bacillus anthracis Vollum Δ htrA and Its Parental Strain, Isolated under Oxidative Stress
Cited by: 1
Author(s): Theodor Chitlaru, Inbar Cohen-Gihon, Ofir Israeli, Uri Elia, Galia Zaide, Moshe Israeli, Adi Beth-Din, Shirley Lazar, Sharon Ehrlich, Anat Zvi, Ofer Cohen
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.61539

Ral GTPases promote breast cancer metastasis by controlling biogenesis and organ targeting of exosomes
Cited by: 61
Author(s): Shima Ghoroghi, Benjamin Mary, Annabel Larnicol, Nandini Asokan, Albrecht Klein, Naël Osmani, Ignacio Busnelli, François Delalande, Nicodème Paul, Sébastien Halary, Frédéric Gros, Laëtitia Fouillen, Anne‐Marie Haeberlé, Cathy Royer, Coralie Spiegelhalter, Gwennan André-Grégoire, Vincent Mittelheisser, Alexandre Detappe, Kendelle J. Murphy, Paul Timpson, Raphaël Carapito, Marcel Blot‐Chabaud, Julie Gavard, Nicolas Vitale, Olivier Lefèbvre, Jacky G. Goetz, Vincent Hyenne
Software Mentions: 1
Published: almost 4 years ago

10.1128/MRA.00982-19

RNA Sequencing Data Sets Identifying Differentially Expressed Transcripts during Campylobacter jejuni Biofilm Formation
Cited by: 4
Author(s): Greg Tram, William P. Klare, Joel A. Cain, Basem Mourad, Stuart J. Cordwell, Victoria Korolik, Christopher J. Day
Software Mentions: 1
Published: almost 5 years ago

10.1002/mbo3.440

N-acylhomoserine lactone-regulation of genes mediating motility and pathogenicity inPseudomonas syringaepathovartabaci11528
Cited by: 7
Author(s): Feifei Cheng, Anzhou Ma, Ji Luo, Xuliang Zhuang, Guoqiang Zhuang
Software Mentions: 1
Published: almost 8 years ago

10.4049/immunohorizons.2000088

RAB11FIP5-Deficient Mice Exhibit Cytokine-Related Transcriptomic Signatures
Cited by: 0
Author(s): Dapeng Li, Todd Bradley, Derek W. Cain, Isabela Pedroza-Pacheco, Maria Aggelakopoulou, Robert Parks, Maggie Barr, Shi-Mao Xia, Richard M. Scearce, Cindy Bowman, Grace Stevens, Amanda Newman, Bhavna Hora, Yue Chen, Kristina J. Riebe, Yunfei Wang, Gregory D. Sempowski, Kevin O. Saunders, Persephone Borrow, Barton F. Haynes
Software Mentions: 1
Published: about 4 years ago

10.1002/mbo3.1227

Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor
Cited by: 2
Author(s): Takashi Okubo, Hideto Takami
Software Mentions: 1
Published: over 3 years ago

10.1002/mbo3.357

RNA‐seq transcriptome analysis of a Pseudomonas strain with diversified catalytic properties growth under different culture medium
Cited by: 16
Author(s): Jiawei Yang, Daijun Zheng, Bao‐Dong Cui, Min Yang, Yong‐Zheng Chen
Software Mentions: 1
Published: over 8 years ago

10.1002/iid3.146

Innate CD8αα+lymphocytes enhance anti-CD40 antibody-mediated colitis in mice
Cited by: 15
Author(s): Abhishek Kumar, Alberto Delgado, M. Blanca Piazuelo, Luc Van Kaer, Danyvid Olivares–Villagómez
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41438-018-0015-4

Cytological, physiological, and transcriptomic analyses of golden leaf coloration in Ginkgo biloba L
Cited by: 74
Author(s): Weixing Li, Shunbo Yang, Zhaogeng Lu, Zhao‐Rong He, Yunling Ye, Beibei Zhao, Li Wang, Biao Jin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41438-019-0149-z

Comparative transcriptome analysis reveals defense responses against soft rot in Chinese cabbage
Cited by: 30
Author(s): Mengyang Liu, Fang Wu, Shan Wang, Yin Lu, Xueping Chen, Yanhua Wang, Aiqin Gu, Zhao Jian-jun, Shuxing Shen
Software Mentions: 1
Published: over 5 years ago

10.1002/mbo3.763

Decreased biofilm formation ability of Acinetobacter baumannii after spaceflight on China's Shenzhou 11 spacecraft
Cited by: 20
Author(s): Xian Zhao, Yi Yu, Xuelin Zhang, Bing Huang, Po Bai, Chou Xu, Diangeng Li, Bin Zhang, Changting Liu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41438-021-00569-0

Combination of genetic analysis and ancient literature survey reveals the divergence of traditional Brassica rapa varieties from Kyoto, Japan
Cited by: 8
Author(s): Yaichi Kawakatsu, Tomoaki Sakamoto, Hokuto Nakayama, Kaori Kaminoyama, Kaori Igarashi, Masaki Yasugi, Hiroshi Kudoh, Atsushi J. Nagano, Kentarô Yano, Nakao Kubo, Michitaka Notaguchi, Seisuke Kimura
Software Mentions: 1
Published: over 3 years ago

10.1038/s41438-019-0201-z

Gene characterization and molecular pathway analysis of reverse thermosensitive genic male sterility in eggplant (Solanum melongena L.)
Cited by: 9
Author(s): Bing Li, Xueping Chen, Wu YanRong, Aiqin Gu, Jingjing Zhang, Sushan Luo, Gao XiuRui, Jianjun Zhao, Xuebiao Pan, Shuxing Shen
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.27155

IGF2 mRNA binding protein-2 is a tumor promoter that drives cancer proliferation through its client mRNAs IGF2 and HMGA1
Cited by: 73
Author(s): Ning Dai, Fei Ji, Jason Wright, Liliana Minichiello, Ruslan I. Sadreyev, Joseph Avruch
Software Mentions: 1
Published: over 7 years ago

10.1186/s41065-019-0085-9

Global transcriptome analysis of H5N1 influenza virus-infected human cells
Cited by: 13
Author(s): Ying Cao, Zhang Kun, Lirong Liu, Wei Li, Bin Zhu, Shuang Zhang, Ping Xu, Wenjun Liu, Jing Li
Software Mentions: 1
Published: almost 6 years ago

10.1074/jbc.RA120.012730

Deletion of fatty acid transport protein 2 (FATP2) in the mouse liver changes the metabolic landscape by increasing the expression of PPARα-regulated genes
Cited by: 17
Author(s): Vincent M. Perez, Jeffrey Gabell, Mark Behrens, Nishikant Wase, Concetta C. DiRusso, Paul N. Black
Software Mentions: 1
Published: over 4 years ago

10.1186/s12934-021-01561-y

Enhanced ascomycin production in Streptomyces hygroscopicus var. ascomyceticus by employing polyhydroxybutyrate as an intracellular carbon reservoir and optimizing carbon addition
Cited by: 9
Author(s): Pan Wang, Ying Yin, Xin Wang, Jianping Wen
Software Mentions: 1
Published: over 3 years ago

10.1186/s13036-021-00260-x

Optimized expression of Hfq protein increases Escherichia coli growth
Cited by: 5
Author(s): Phuong Vo, Hyang-Mi Lee, Jun Ren, Dokyun Na
Software Mentions: 1
Published: almost 4 years ago

10.1186/s41065-021-00186-w

Network analysis of potential risk genes for psoriasis
Cited by: 2
Author(s): Huilin Wang, Wenjun Chen, Jin He, Wenjuan Xu, Jiangwei Liu
Software Mentions: 1
Published: over 3 years ago

10.1186/s41065-020-00134-0

Transcriptome analysis on responses of orchardgrass (Dactylis glomerata L.) leaves to a short term flooding
Cited by: 16
Author(s): Dandan Qiao, Yajie Zhang, Xue-Mei Xiong, Mingyang Li, Kaiyong Cai, Hongyu Luo, Bing Zeng
Software Mentions: 1
Published: over 4 years ago

10.1097/HS9.0000000000000233

AXL Inhibition Extinguishes Primitive JAK2 Mutated Myeloproliferative Neoplasm Progenitor Cells
Cited by: 4
Author(s): Stella Pearson, Rognvald Blance, Tim C. P. Somervaille, Anthony D. Whetton, Andrew Pierce
Software Mentions: 1
Published: over 5 years ago

10.1186/s12934-021-01593-4

Anaerobic biosynthesis of rhamnolipids by Pseudomonas aeruginosa: performance, mechanism and its application potential for enhanced oil recovery
Cited by: 9
Author(s): Feng Zhao, Qingzhi Wang, Ying Zhang, Lei Liu
Software Mentions: 1
Published: over 3 years ago

10.1111/jcmm.14921

Divergent effects of canonical and non‐canonical TGF‐β signalling on mixed contractile‐synthetic smooth muscle cell phenotype in human Marfan syndrome aortic root aneurysms
Cited by: 24
Author(s): Albert J Pedroza, Tiffany Koyano, Jeffrey D Trojan, Adam J. Rubin, Itai Palmon, Kevin J Jaatinen, Grayson Burdon, Paul Chang, Yasushi Tashima, Jason Z. Cui, G. Berry, Cristiana Iosef, Michael P. Fischbein
Software Mentions: 1
Published: almost 5 years ago

10.1111/jcmm.15063

METTL3/YTHDF2 m 6 A axis promotes tumorigenesis by degrading SETD7 and KLF4 mRNAs in bladder cancer
Cited by: 86
Author(s): Haiyun Xie, Jiangfeng Li, Yufan Ying, Huaqing Yan, Ke Jin, Xueyou Ma, Liujia He, Xin Xu, Ben Liu, Xiao Wang, Xiangyi Zheng, Liping Xie
Software Mentions: 1
Published: over 4 years ago

10.1186/s13099-018-0236-y

Chlortetracycline and florfenicol induce expression of genes associated with pathogenicity in multidrug-resistant Salmonella enterica serovar Typhimurium
Cited by: 8
Author(s): Devin B. Holman, Shawn M. D. Bearson, Bradley L. Bearson, Brian W. Brunelle
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.16285

A novel Cytochrome P450 26A1 expressing NK cell subset at the mouse maternal‐foetal interface
Cited by: 2
Author(s): Dongbin Wei, Dandan Li, Aiqin Gu, Wen‐Heng Ji, Ying Yang, Jing‐Pian Peng
Software Mentions: 1
Published: almost 4 years ago

10.3390/md17020082

Metabolomic and Transcriptomic Analyses of Escherichia coli for Efficient Fermentation of L-Fucose
Cited by: 19
Author(s): Jungyeon Kim, Yu Eun Cheong, In‐Ho Jung, Kyoung Heon Kim
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-015-1943-0

Transcriptome profile of liver at different physiological stages reveals potential mode for lipid metabolism in laying hens
Cited by: 76
Author(s): Hong Li, Taian Wang, Chunlin Xu, Dandan Wang, Jingyao Ren, Yanmin Li, Yadong Tian, Yanbin Wang, Yuping Jiao, Xiangtao Kang, Xiaojun Liu
Software Mentions: 1
Published: about 9 years ago

10.1111/jcmm.16824

miRNA expression analysis in the human heart: Undifferentiated progenitors vs. bioptic tissues—Implications for proliferation and ageing
Cited by: 5
Author(s): Gioacchin Iannolo, Maria Rita Sciuto, Nicola Cuscino, Claudia Carcione, Claudia Coronnello, Cinzia Maria Chinnici, Giuseppe Maria Raffa, Michele Pilato, Pier Giulio Conaldi
Software Mentions: 1
Published: over 3 years ago

10.1002/jcp.26222

Comprehensive transcriptome analysis of fluid shear stress altered gene expression in renal epithelial cells
Cited by: 31
Author(s): Steven J. Kunnen, Tareq B. Malas, Cornelis M. Semeins, Astrid D. Bakker, Dorien J.M. Peters
Software Mentions: 1
Published: about 7 years ago

Projects: pypi: HTSeq

Papers Mentioning HTSeq 3,071