pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.1186/s12864-018-4784-9

Comparative transcriptome analysis of the invasive weed Mikania micrantha with its native congeners provides insights into genetic basis underlying successful invasion
Cited by: 15
Author(s): Wuxia Guo, Ying Liu, Wei Lun Ng, Pei Chun Liao, Bing Huang, Weixi Li, Chunmei Li, Xianggang Shi, Yelin Huang
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.26830

Rapid activation of epithelial-mesenchymal transition drives PARP inhibitor resistance in Brca2-mutant mammary tumours
Cited by: 16
Author(s): Liliana Ordonez, Trevor Hay, Robert McEwen, Urszula M. Polanska, Adina Hughes, Oona Delpuech, Elaine Cadogan, Steve Powell, Jonathan R. Dry, Giusy Tornillo, Lucy Silcock, Elisabetta Leo, Mark J. O’Connor, Alan R. Clarke, Matthew J. Smalley
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.00148-17

The Cell Wall Lipid PDIM Contributes to Phagosomal Escape and Host Cell Exit of Mycobacterium tuberculosis
Cited by: 165
Author(s): Jeff Quigley, V. K. Hughitt, Carlos A. Velikovsky, Roy A. Mariuzza, Najib M. El-Sayed, Volker Briken
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.5997

Analyses of long non-coding RNA and mRNA profiling in the spleen of diarrheic piglets caused by Clostridium perfringens type C
Cited by: 11
Author(s): Zunqiang Yan, Xiaoyu Huang, Weibo Sun, Qiaoli Yang, Hairen Shi, Tiantuan Jiang, Shenggui Li, Pengfei Wang, Shuangbao Gun
Software Mentions: 1
Published: almost 8 years ago

10.3390/pathogens9110956

PXO_RS20535, Encoding a Novel Response Regulator, Is Required for Chemotactic Motility, Biofilm Formation, and Tolerance to Oxidative Stress in Xanthomonas oryzae pv. oryzae
Cited by: 7
Author(s): Abdulwahab Antar, Mi-Ae Lee, Youngchul Yoo, Man-Ho Cho, Sang‐Won Lee
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13075-021-02595-8

Elucidating mechano-pathology of osteoarthritis: transcriptome-wide differences in mechanically stressed aged human cartilage explants
Cited by: 9
Author(s): E. Houtman, Margo Tuerlings, Janne Riechelman, Eka Suchiman, Robert J. P. van der Wal, Rob G H H Nelissen, Hailiang Mei, Y.F. Ramos, Rodrigo Coutinho de Almeida, Ingrid Meulenbelt
Software Mentions: 1
Published: about 5 years ago

10.1128/mBio.02229-17

Redox Regulation, Rather than Stress-Induced Phosphorylation, of a Hog1 Mitogen-Activated Protein Kinase Modulates Its Nitrosative-Stress-Specific Outputs
Cited by: 22
Author(s): Carmen Herrero‐de‐Dios, Alison M. Day, Anna Tillmann, Stavroula Kastora, David Stead, Paula S. Salgado, Janet Quinn, Alistair J. P. Brown
Software Mentions: 1
Published: over 8 years ago

10.3390/pathogens10060676

Genetic and Transcriptomic Variations for Amoxicillin Resistance in Helicobacter pylori under Cryopreservation
Cited by: 2
Author(s): Xing Han, Yiyao Zhang, Lihua He, Ruyue Fan, Lu Sun, Dongjie Fan, Yanan Gong, Xiaoli Chen, Yuanhai You, Fei Zhao, Maojun Zhang, Jianzhong Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-020-4004-8

Oncomelania hupensis retains its ability to transmit Schistosoma japonicum 13 years after migration from permissive to non-permissive areas
Cited by: 3
Author(s): Chengsong Sun, Fang Luo, Xin Liu, Feng Miao, Wei Hu
Software Mentions: 1
Published: over 6 years ago

10.3390/v12040383

Next-Generation Sequencing Analysis of Cellular Response to Influenza B Virus Infection
Cited by: 3
Author(s): Zizhang Sheng, Can Huang, Runxia Liu, Yicheng Guo, Zhilin Ran, Feng Li, Dan Dan Wang
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.00192-19

Metabolism and Development during Conidial Germination in Response to a Carbon-Nitrogen-Rich Synthetic or a Natural Source of Nutrition in Neurospora crassa
Cited by: 21
Author(s): Zheng Wang, Cristina Miguel-Rojas, Francesc López-Giráldez, Oded Yarden, Frances Trail, Jeffrey P. Townsend
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01072-19

Synthetic Methane-Consuming Communities from a Natural Lake Sediment
Cited by: 4
Author(s): Yu Zheng, Joseph Groom, Yue Zheng, Ludmila Chistoserdova, Jing Huang
Software Mentions: 1
Published: about 7 years ago

10.1080/21505594.2021.1948276

Transcriptome analysis of porcine PBMCs reveals lipopolysaccharide-induced immunomodulatory responses and crosstalk of immune and glucocorticoid receptor signaling
Cited by: 7
Author(s): Zhiwei Li, Nares Trakooljul, Frieder Hadlich, Siriluck Ponsuksili, Klaus Wimmers, Eduard Muráni
Software Mentions: 1
Published: about 5 years ago

10.1186/s13567-020-00746-4

Marek’s disease vaccines-induced differential expression of known and novel microRNAs in primary lymphoid organ bursae of White Leghorn
Cited by: 7
Author(s): Lei Zhang, Chen Zhu, Mohammad Heidari, Kunzhe Dong, Shuang Chang, Qingmei Xie, Huanmin Zhang
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02119-19

Integrative Activity of Mating Loci, Environmentally Responsive Genes, and Secondary Metabolism Pathways during Sexual Development of Chaetomium globosum
Cited by: 7
Author(s): Zheng Wang, Francesc López-Giráldez, Junrui Wang, Frances Trail, Jeffrey P. Townsend
Software Mentions: 1
Published: over 6 years ago

10.1016/j.omtn.2018.08.005

Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD
Cited by: 39
Author(s): Anna M.L. Coenen-Stass, Helena Sork, Sole Gatto, Caroline Godfrey, Amarjit Bhomra, Kaarel Krjutškov, Jonathan R. Hart, Jakub Orzechowski Westholm, Liz O’Donovan, Andreas Roos, Hanns Lochmüller, Pier Lorenzo Puri, Samir El Andaloussi, Matthew Wood, Thomas C. Roberts
Software Mentions: 1
Published: almost 8 years ago

10.3390/antibiotics10030246

Antimicrobial Effect and the Mechanism of Diallyl Trisulfide against Campylobacter jejuni
Cited by: 11
Author(s): Yuanyue Tang, Fengming Li, Danan Gu, Wenyan Wang, Jinlin Huang, Xinan Jiao
Software Mentions: 1
Published: over 5 years ago

10.1111/mpp.12963

Ralstonia solanacearum promotes pathogenicity by utilizing <scp>l</scp>‐glutamic acid from host plants
Cited by: 30
Author(s): Fang‐Fang Shen, Wenfang Yin, Shihao Song, Zhihan Zhang, Peiyi Ye, Yong Zhang, Jianuan Zhou, Fei He, Peng Li, Yinyue Deng
Software Mentions: 1
Published: about 6 years ago

10.1002/1878-0261.12183

Biomarker potential ofST6GALNAC3andZNF660promoter hypermethylation in prostate cancer tissue and liquid biopsies
Cited by: 46
Author(s): Christa Haldrup, Anne L. Pedersen, Nadia Øgaard, Siri H. Strand, Søren Høyer, Michael Borre, Torben F. Ørntoft, Karina D. Sørensen
Software Mentions: 1
Published: over 8 years ago

10.3390/molecules25204857

Antibacterial Efficacy and Mechanism of Mannosylerythritol Lipids-A on Listeria monocytogenes
Cited by: 12
Author(s): Xiayu Liu, Qin Shu, Qihe Chen, Xinxin Pang, Yansha Wu, Wanyi Zhou, Yan‐Dong Wu, Jianrui Niu, Xinglin Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules23112995

Insecticidal Activities of Chloramphenicol Derivatives Isolated from a Marine Alga-Derived Endophytic Fungus, Acremonium vitellinum, against the Cotton Bollworm, Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae)
Cited by: 15
Author(s): Dan Chen, Peng Zhang, Tong Liu, Xiufang Wang, Zhaoxia Li, Wei Li, Fenglong Wang
Software Mentions: 1
Published: almost 8 years ago

10.3390/molecules23030584

Melatonin Improves Heat Tolerance in Kiwifruit Seedlings through Promoting Antioxidant Enzymatic Activity and Glutathione S-Transferase Transcription
Cited by: 86
Author(s): Dong Liang, Fan Gao, Zhiyou Ni, Lijin Lin, Qunxian Deng, Yi Tang, Xun Wang, Xian Luo
Software Mentions: 1
Published: over 8 years ago

10.1186/s40478-019-0697-3

Downregulation of miR-204 expression defines a highly aggressive subset of Group 3/Group 4 medulloblastomas
Cited by: 14
Author(s): Harish Shrikrishna Bharambe, Raikamal Paul, Pooja Panwalkar, Rakesh Jalali, Sridhar Epari, Tejpal Gupta, Aliasgar Moiyadi, Prakash Shetty, Sadaf Kazi, Akash Deogharkar, Shalaka Masurkar, Kedar Yogi, Ratika Kunder, Nikhil Gadewal, Atul Goel, Naina Goel, Girish Chinnaswamy, Vijay Ramaswamy, Neelam Shirsat
Software Mentions: 1
Published: over 7 years ago

10.1186/s13018-019-1163-4

Ageing characteristics of bone indicated by transcriptomic and exosomal proteomic analysis of cortical bone cells
Cited by: 16
Author(s): Chenyang Zhang, Shanshan Xu, Shufan Zhang, Mengmeng Liu, Haiming Du, Ruinan Sun, Bo Jing, Yao Sun
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-15-802

miRNome traits analysis on endothelial lineage cells discloses biomarker potential circulating microRNAs which affect progenitor activities
Cited by: 29
Author(s): Ting‐Yu Chang, Tse‐Shun Huang, Hsei‐Wei Wang, Shing‐Jyh Chang, Hung-Hao Lo, Ya-Lin Chiu, Yen-Li Wang, Chung-Der Hsiao, Chin-Han Tsai, Che-Kai Chan, Ren-In You, Chun‐Hsien Wu, Tsung-Neng Tsai, Shu‐Meng Cheng, Cheng-Chung Cheng
Software Mentions: 1
Published: almost 12 years ago

10.1128/mSphere.00590-18

Genotypic and Phenotypic Diversity of Herpes Simplex Virus 2 within the Infected Neonatal Population
Cited by: 25
Author(s): Lisa N. Akhtar, Christopher D. Bowen, Daniel W. Renner, Utsav Pandey, Ashley N. Della Fera, David W. Kimberlin, Mark N. Prichard, Richard J. Whitley, Matthew D. Weitzman, Moriah L. Szpara
Software Mentions: 1
Published: over 7 years ago

10.1128/mSphere.00027-20

Trypanosoma brucei RAP1 Has Essential Functional Domains That Are Required for Different Protein Interactions
Cited by: 13
Author(s): Marjia Afrin, Hanadi Kishmiri, Ranjodh Sandhu, M A G Rabbani, Bibo Li
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules24183380

Transcriptome and Metabolite Profiling Reveal Novel Insights into Volatile Heterosis in the Tea Plant (Camellia Sinensis)
Cited by: 25
Author(s): Yuanrun Zheng, Pengjie Wang, Xuejin Chen, Yun Sun, Chuan Yue, Naixing Ye
Software Mentions: 1
Published: about 7 years ago

10.1128/mSphere.00412-21

Clover Root Exudates Favor Novosphingobium sp. HR1a Establishment in the Rhizosphere and Promote Phenanthrene Rhizoremediation
Cited by: 7
Author(s): Lázaro Molina, Zulema Udaondo, María Montero-Curiel, Rolf-Michael Wittich, Alicia García-Puente, Ana Segura
Software Mentions: 1
Published: about 5 years ago

10.1111/mec.15752

Gene expression during larval caste determination and differentiation in intermediately eusocial bumblebees, and a comparative analysis with advanced eusocial honeybees
Cited by: 5
Author(s): David H. Collins, Anna Wirén, Marjorie Labédan, Michael G. Smith, D. C. Prince, Irina Mohorianu, Tamàs Dalmay, Andrew F. G. Bourke
Software Mentions: 1
Published: over 5 years ago

10.3390/ani10112111

Identification and Characterization of Hypothalamic Alternative Splicing Events and Variants in Ovine Fecundity-Related Genes
Cited by: 2
Author(s): Zhuangbiao Zhang, Jiao Tang, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang, Wenping Hu
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-020-06819-0

Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing
Cited by: 9
Author(s): Ilhan Cem Duru, Margarita Andreevskaya, Pia Laine, Tone Mari Rode, Anne Ylinen, Trond Løvdal, Nadav Bar, Peter Crauwels, Christian U. Riedel, Florentina Ionela Bucur, Anca Ioana Nicolau, Petri Auvinen
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-018-4866-8

SNP hot-spots in the clam parasite QPX
Cited by: 2
Author(s): Sleiman Bassim, Bassem Allam
Software Mentions: 1
Published: about 8 years ago

10.1186/1755-8166-7-S1-P87

Defining the effects of prematurity on the lymphocyte transcriptome
Cited by: 0
Author(s): Soumyaroop Bhattacharya, Ravi S. Misra, Heidi Hyuck, Christopher Slaunwhite, Shannon Castiglione, Deanna Maffett, Anne Marie Reynolds, Gloria S. Pryhuber, Thomas J. Mariani
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-015-1427-2

Global gene expression patterns of grass carp following compensatory growth
Cited by: 36
Author(s): Libo He, Yongyan Pei, Yao Jiang, Yongming Li, Lanjie Liao, Zhu Zhang, Yaping Wang
Software Mentions: 1
Published: over 11 years ago

10.1128/mSystems.00091-17

Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI
Cited by: 19
Author(s): Joshua J. Hamilton, Sarahi L. Garcia, Brittany Brown, Ben O. Oyserman, Francisco Moya-Flores, Stefan Bertilsson, Rex R. Malmstrom, Katrina T. Forest, Katherine D. McMahon
Software Mentions: 1
Published: about 9 years ago

10.1093/molbev/msx205

The Influence of Polyploidy on the Evolution of Yeast Grown in a Sub-Optimal Carbon Source
Cited by: 31
Author(s): Amber Lynne Scott, Phillip A. Richmond, Robin Dowell, Anna Selmecki
Software Mentions: 1
Published: about 9 years ago

10.1186/s13229-015-0008-1

Fmrp targets or not: long, highly brain-expressed genes tend to be implicated in autism and brain disorders
Cited by: 30
Author(s): Rebecca Ouwenga, Joseph D. Dougherty
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-019-5717-y

Transcriptomic and proteomic analyses of genetic factors influencing adductor muscle coloration in QN Orange scallops
Cited by: 10
Author(s): Junlin Song, Chunde Wang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-018-4824-5

The coupling of transcriptome and proteome adaptation during development and heat stress response of tomato pollen
Cited by: 58
Author(s): Mario Keller, Jegadeesan Subramani
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms8060858

Interaction of Varroa destructor and Sublethal Clothianidin Doses during the Larval Stage on Subsequent Adult Honey Bee (Apis mellifera L.) Health, Cellular Immunity, Deformed Wing Virus Levels and Differential Gene Expression
Cited by: 8
Author(s): Nuria Morfin, Paul H. Goodwin, Ernesto Guzmán-Novoa
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/9706792

The Specific Inhibition of SOD1 Selectively Promotes Apoptosis of Cancer Cells via Regulation of the ROS Signaling Network
Cited by: 18
Author(s): Xiang Li, Yuanyuan Chen, Jidong Zhao, Jiayuan Shi, Mingfang Wang, Shuang Qiu, Yinghui Hu, Yan Xu, Yanfang Cui, Chunrong Liu
Software Mentions: 1
Published: over 7 years ago

10.3390/microorganisms8020211

The Dysbiosis of Gut Microbiota Caused by Low-Dose Cadmium Aggravate the Injury of Mice Liver through Increasing Intestinal Permeability
Cited by: 34
Author(s): Yehao Liu, Yuhui Li, Yuhong Xia, Kaiyong Liu, Lingling Ren, Yan-Li Ji
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9050970

Caenorhabditis elegans Extracts Stimulate IAA Biosynthesis in Arthrobacter pascens ZZ21 via the Indole-3-pyruvic Acid Pathway
Cited by: 3
Author(s): Mengsha Li, Teng Li, Ming Zhou, Yexin Zhao, Jinming Xu, Feng Hu, Huixin Li
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-15-666

Impaired liver function in Xenopus tropicalis exposed to benzo[a]pyrene: transcriptomic and metabolic evidence
Cited by: 41
Author(s): Christophe Regnault, Isabelle Worms, Christine Oger-Desfeux, Christelle Melodelima, Sylvie Veyrenc, Marie-Laure Bayle, Bruno Combourieu, Aurélie Bonin, Julien Renaud, Muriel Raveton, Stéphane Reynaud
Software Mentions: 1
Published: about 12 years ago

10.1186/s40168-021-01098-7

Breed differences in the expression levels of gga-miR-222a in laying hens influenced H2S production by regulating methionine synthase genes in gut bacteria
Cited by: 5
Author(s): Si-Cheng Xing, Chun-Bo Huang, Ruizhu Wu, Yiwen Yang, Jingyuan Chen, Jiandui Mi, Yinbao Wu, Yan Wang, Xindi Liao
Software Mentions: 1
Published: about 5 years ago

10.1128/mSystems.00224-20

Genome-Wide Analysis of RNA Decay in the Cyanobacterium Synechococcus sp. Strain PCC 7002
Cited by: 5
Author(s): Gina C. Gordon, Jeffrey C. Cameron, Sanjan T. P. Gupta, Michael D. Engstrom, Jennifer L. Reed, Brian F. Pfleger
Software Mentions: 1
Published: about 6 years ago

10.1186/s40168-017-0386-z

Influenza A virus infection impacts systemic microbiota dynamics and causes quantitative enteric dysbiosis
Cited by: 173
Author(s): Soner Yildiz, Béryl Mazel-Sanchez, Matheswaran Kandasamy, Balaji Manicassamy, Mirco Schmolke
Software Mentions: 1
Published: over 8 years ago

10.1128/MRA.00618-20

Transcriptome Sequencing Data of Bacillus anthracis Vollum Δ htrA and Its Parental Strain, Isolated under Oxidative Stress
Cited by: 1
Author(s): Theodor Chitlaru, Inbar Cohen-Gihon, Ofir Israeli, Uri Elia, Galia Zaide, Moshe Israeli, Adi Beth-Din, Shirley Lazar, Sharon Ehrlich, Anat Zvi, Ofer Cohen
Software Mentions: 1
Published: about 6 years ago

10.1128/MRA.00982-19

RNA Sequencing Data Sets Identifying Differentially Expressed Transcripts during Campylobacter jejuni Biofilm Formation
Cited by: 4
Author(s): Greg Tram, William P. Klare, Joel A. Cain, Basem Mourad, Stuart J. Cordwell, Victoria Korolik, Christopher J. Day
Software Mentions: 1
Published: over 6 years ago

10.1128/mSystems.01256-20

Caught between Two Genes: Accounting for Operonic Gene Structure Improves Prokaryotic RNA Sequencing Quantification
Cited by: 1
Author(s): Taylor Reiter
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-017-4360-8

The coding and noncoding transcriptome of Neurospora crassa
Cited by: 23
Author(s): Ibrahim Avi Cemel, Nati Ha, Géza Schermann, Shusuke Yonekawa, Michael Brunner
Software Mentions: 1
Published: almost 9 years ago

10.1128/mSystems.00738-21

Identification of a GrgA-Euo-HrcA Transcriptional Regulatory Network in Chlamydia
Cited by: 6
Author(s): Wurihan Wurihan, Yi Zou, Alec M. Weber, Korri Weldon, Yehong Huang, Xiaofeng Bao, Chengsheng Zhu, Xiang Wu, Yaqun Wang, Zhao Lai, Huizhou Fan
Software Mentions: 1
Published: about 5 years ago

10.1002/mbo3.440

N-acylhomoserine lactone-regulation of genes mediating motility and pathogenicity inPseudomonas syringaepathovartabaci11528
Cited by: 7
Author(s): Feifei Cheng, Anzhou Ma, Ji Luo, Xuliang Zhuang, Guoqiang Zhuang
Software Mentions: 1
Published: over 9 years ago

10.3390/ani10091658

Transcriptional Regulator YqeI, Locating at ETT2 Locus, Affects the Pathogenicity of Avian Pathogenic Escherichia coli
Cited by: 9
Author(s): Mei Xue, Yong Xiao, Dandan Fu, Muhammad Akmal Raheem, Ying Shao, Xiangjun Song, Jing Tu, Ting Xue, Kezong Qi
Software Mentions: 1
Published: about 6 years ago

10.1002/mbo3.1227

Metabolic potential of the imperfect denitrifier Candidatus Desulfobacillus denitrificans in an anammox bioreactor
Cited by: 2
Author(s): Takashi Okubo, Hideto Takami
Software Mentions: 1
Published: about 5 years ago

10.1186/s13059-018-1418-0

Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing
Cited by: 86
Author(s): Seyed Yahya Anvar, G. Allard, Elizabeth Tseng, Gloria Sheynkman, Eleonora de Klerk, Martijn Vermaat, Raymund H. Yin, Hans Johansson, Yavuz Ariyürek, Johan T. den Dunnen, Stephen W. Turner, Peter A.C. ’t Hoen
Software Mentions: 1
Published: over 8 years ago

10.1002/mbo3.357

RNA‐seq transcriptome analysis of a Pseudomonas strain with diversified catalytic properties growth under different culture medium
Cited by: 16
Author(s): Jiawei Yang, Daijun Zheng, Bao‐Dong Cui, Min Yang, Yong‐Zheng Chen
Software Mentions: 1
Published: over 10 years ago

10.1186/s13059-014-0523-y

An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era
Cited by: 129
Author(s): Zhenqiang Su, Hong Fang, Huixiao Hong, Leming Shi, Wenqian Zhang, Wenwei Zhang, Yanyan Zhang, Zirui Dong, Lee Lancashire, Marina Bessarabova, Xi Yang, Baitang Ning, Binsheng Gong, Joe Meehan, Joshua Xu, Weigong Ge, Roger Perkins, Matthias Fischer, Weida Tong
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12711-014-0074-4

Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions
Cited by: 106
Author(s): Kathryn E. Kemper, Coralie M. Reich, P.J. Bowman, Christy J. Vander Jagt, Amanda J. Chamberlain, Brett Mason, Ben J. Hayes, Michael E. Goddard
Software Mentions: 1
Published: over 11 years ago

10.3390/genes12091354

GDF6 Knockdown in a Family with Multiple Synostosis Syndrome and Speech Impairment
Cited by: 3
Author(s): Raymond A. Clarke, Zhiming Fang, Dédée Murrell, Tabrez Sheriff, Valsamma Eapen
Software Mentions: 1
Published: about 5 years ago

10.3390/genes11060629

Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice
Cited by: 5
Author(s): Yong Zhang, Limei Zhao, Hong Mei Xiao, Jinkiat Chew, Jinxia Xiang, Kaiyun Qian, Xing Fan
Software Mentions: 1
Published: over 6 years ago

10.1002/mbo3.763

Decreased biofilm formation ability of Acinetobacter baumannii after spaceflight on China's Shenzhou 11 spacecraft
Cited by: 20
Author(s): Xian Zhao, Yi Yu, Xuelin Zhang, Bing Huang, Po Bai, Chou Xu, Diangeng Li, Bin Zhang, Changting Liu
Software Mentions: 1
Published: almost 8 years ago

10.3390/genes11030308

Transcriptomic Analysis of the Chicken MDA5 Response Genes
Cited by: 12
Author(s): Shiman Yu, Haiying Mao, Meilin Jin, Xian Lin
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020134

Robust Cytonuclear Coordination of Transcription in Nascent Arabidopsis thaliana Autopolyploids
Cited by: 16
Author(s): Jeremy E. Coate, W Max Schreyer, David Kum, Jeff J. Doyle
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020178

Transcriptomics Reveal Altered Metabolic and Signaling Pathways in Podocytes Exposed to C16 Ceramide-Enriched Lipoproteins
Cited by: 5
Author(s): Samar M. Hammad, Waleed O. Twal, Ehtesham Arif, Andrea J. Semler, Richard L. Klein, Deepak Nihalani
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020167

Testing Differential Gene Networks under Nonparanormal Graphical Models with False Discovery Rate Control
Cited by: 3
Author(s): Qingyang Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-021-01561-y

Enhanced ascomycin production in Streptomyces hygroscopicus var. ascomyceticus by employing polyhydroxybutyrate as an intracellular carbon reservoir and optimizing carbon addition
Cited by: 9
Author(s): Pan Wang, Ying Yin, Xin Wang, Jianping Wen
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10120958

Transcriptome Sequencing Reveals the Traits of Spermatogenesis and Testicular Development in Large Yellow Croaker (Larimichthys crocea)
Cited by: 15
Author(s): Shengyu Luo, Xinming Gao, Jie Ding, Cheng Liu, Chang Du, Cong-Cong Hou, Junquan Zhu, Bao Liu
Software Mentions: 1
Published: almost 7 years ago

10.3390/genes10080617

Global Investigation of Cytochrome P450 Genes in the Chicken Genome
Cited by: 6
Author(s): Jingyao Ren, Liyu Yang, Quan‐Lin Li, Qinghe Zhang, Chang Sun, Xiaojun Liu, Ning Yang
Software Mentions: 1
Published: about 7 years ago

10.3390/genes10080605

Transcriptome Analysis of Acid-Responsive Genes and Pathways Involved in Polyamine Regulation in Iron Walnut
Cited by: 4
Author(s): Xiaomei Luo, Juncheng Liu
Software Mentions: 1
Published: about 7 years ago

10.3390/genes10050340

Global Regulator PhoP is Necessary for Motility, Biofilm Formation, Exoenzyme Production, and Virulence of Xanthomonas citri Subsp. citri on Citrus Plants
Cited by: 10
Author(s): Wei Chu-dan, Tian Ding, Changqing Chang, Chengpeng Yu, Xing-wei Li, Qiongguang Liu
Software Mentions: 1
Published: over 7 years ago

10.3390/genes9010029

The Landscape of Small Non-Coding RNAs in Triple-Negative Breast Cancer
Cited by: 19
Author(s): Yan Guo, Hui Yu, Jing Wang, Quanhu Sheng, Shilin Zhao, Zhao Yan, Brian D. Lehmann
Software Mentions: 1
Published: over 8 years ago

10.1155/2019/8465030

Protective Effect of Ginsenoside Rg1 on Oxidative Damage Induced by Hydrogen Peroxide in Chicken Splenic Lymphocytes
Cited by: 19
Author(s): Shicheng Bi, Xiuling Ma, Yuemin Wang, Xiaoqing Chi, Yong Zhang, Wei Xu, Songhua Hu
Software Mentions: 1
Published: over 7 years ago

10.3390/genes8100275

Identification and Characterization of TALE Homeobox Genes in the Endangered Fern Vandenboschia speciosa
Cited by: 11
Author(s): Mercedes Ruíz-Estévez, Mohammed Bakkali, Rubén Martín-Blázquez, Manuel A. Garrido-Ramos
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes8080203

Transcriptome Analysis Reveals Long Intergenic Noncoding RNAs Contributed to Growth and Meat Quality Differences between Yorkshire and Wannanhua Pig
Cited by: 20
Author(s): Cheng Zou, Sha Li, Lulu Deng, Yang Guan, Dake Chen, Xiongkun Yuan, Tianrui Xia, Xinglin He, Yawei Shan, Changchun Li
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-019-5986-5

Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines
Cited by: 27
Author(s): Yuan Qin, Hongguang Sun, Pengbo Hao, Hantao Wang, Congcong Wang, Liang Ma, Hengling Wei, Shuang Yu
Software Mentions: 1
Published: about 7 years ago

10.3390/genes7110097

Identification of Novel Equine (Equus caballus) Tendon Markers Using RNA Sequencing
Cited by: 7
Author(s): J. M. Kuemmerle, Felix Theiss, Michał Okoniewski, Fabienne A. Weber, Sonja Hemmi, Ali Mirsaidi, Peter J. Richards, Paolo Cinelli
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12934-021-01593-4

Anaerobic biosynthesis of rhamnolipids by Pseudomonas aeruginosa: performance, mechanism and its application potential for enhanced oil recovery
Cited by: 9
Author(s): Feng Zhao, Qingzhi Wang, Ying Zhang, Lei Liu
Software Mentions: 1
Published: over 5 years ago

10.3390/md17020082

Metabolomic and Transcriptomic Analyses of Escherichia coli for Efficient Fermentation of L-Fucose
Cited by: 19
Author(s): Jungyeon Kim, Yu Eun Cheong, In‐Ho Jung, Kyoung Heon Kim
Software Mentions: 1
Published: over 7 years ago

10.3390/md18070360

Glyceroglycolipid Metabolism Regulations under Phosphate Starvation Revealed by Transcriptome Analysis in Synechococcus elongatus PCC 7942
Cited by: 4
Author(s): Xinrui Xu, Xiangshui Miao
Software Mentions: 1
Published: about 6 years ago

10.1534/g3.119.400884

Genome-Wide Association Study for Maize Leaf Cuticular Conductance Identifies Candidate Genes Involved in the Regulation of Cuticle Development
Cited by: 10
Author(s): Lin Meng, Susanne Matschi, Miguel Vasquez, James Chamness, Nicholas Kaczmar, Matheus Baseggio, Michael G. Miller, Ethan L. Stewart, Pengfei Qiao, Michael J. Scanlon, Isabel Molina, Laurie G. Smith, Michael A. Gore
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.120.400990

Genetic Variation and Potential for Resistance Development to the tTA Overexpression Lethal System in Insects
Cited by: 16
Author(s): Katherine Elizabeth Knudsen, William Reid, Traci M Barbour, Laci M Bowes, Juliana Duncan, Elaina Philpott, Samantha Potter, Maxwell J. Scott
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400818

Comparative Transcriptome Profiling Reveals Compatible and Incompatible Patterns of Potato Toward Phytophthora infestans
Cited by: 27
Author(s): Yanfeng Duan, Shaoguang Duan, Miles Armstrong, Jianfei Xu, Junli Zheng, Jun Hu, Xinwei Chen, Ingo Hein, Guangcun Li, Liping Jin
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400229

Comparative Transcriptome Analyses Revealed Conserved and Novel Responses to Cold and Freezing Stress in Brassica napus L
Cited by: 28
Author(s): Xin He, Xianchao Ni, Ping Xie, Wei Liu, Yang Gi Min, Yu Kang, Lunwen Qin, Hua Wei
Software Mentions: 1
Published: about 7 years ago

10.1186/s13046-018-0687-5

RHBDD1 promotes colorectal cancer metastasis through the Wnt signaling pathway and its downstream target ZEB1
Cited by: 57
Author(s): Mengmeng Zhang, Fei Miao, R. Stephanie Huang, Wenjie Liu, Yuechao Zhao, Tao Jiao, Yalan Lu, Fan Wu, Xiaojuan Wang, Han Wang, Hong Zhao, Hongge Ju, Shiying Miao, Linfang Wang, Wei Song
Software Mentions: 1
Published: over 8 years ago

10.26508/lsa.202000642

Constitutive CD8 expression drives innate CD8+ T-cell differentiation via induction of iNKT2 cells
Cited by: 5
Author(s): Satoshi Kojo, Michiko Ohno-Oishi, Hisashi Wada, Sebastian Nieke, Wooseok Seo, Sawako Muroi, Ichiro Taniuchi
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.117.300257

Large-Scale Low-Cost NGS Library Preparation Using a Robust Tn5 Purification and Tagmentation Protocol
Cited by: 99
Author(s): Bianca P. Hennig, Lars Velten, Ines Racke, Chelsea Szu-Tu, Matthias Thoms, Vladimir Rybin, Hüseyin Besir, Kim Remans, Lars M. Steinmetz
Software Mentions: 1
Published: over 8 years ago

10.1534/g3.117.042127

Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses
Cited by: 40
Author(s): Francisco A. Cubillos, Claire Brice, Jennifer Molinet, Sébastien Tisné, Valentina Abarca, Sebastián M. Tapia, Christian I. Oporto, Verónica García, Gianni Liti, Claudio Martı́nez
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.116.035444

Microenvironmental Gene Expression Plasticity Among IndividualDrosophila melanogaster
Cited by: 30
Author(s): Yanzhu Lin, Zhenxia Chen, Brian Oliver, Susan T Harbison
Software Mentions: 1
Published: almost 10 years ago

10.1534/g3.116.027995

Characterization of a Single Genomic Locus Encoding the Clustered Protocadherin Receptor Diversity in Xenopus tropicalis
Cited by: 7
Author(s): Hakki Emre Etlioglu, Wei Sun, Zengjin Huang, Wei Chen, Dietmar Schmucker
Software Mentions: 1
Published: about 10 years ago

10.1534/g3.116.027870

Preparing for Winter: The Transcriptomic Response Associated with Different Day Lengths in Drosophila montana
Cited by: 36
Author(s): Darren J. Parker, Michael G. Ritchie, Maaria Kankare
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.115.023366

Diverse Hormone Response Networks in 41 IndependentDrosophilaCell Lines
Cited by: 37
Author(s): Marcus H. Stoiber, S Celniker, Lucy Cherbas, Ben Brown, Peter Cherbas
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.115.021220

Oviposition but Not Sex Allocation Is Associated with Transcriptomic Changes in Females of the Parasitoid Wasp Nasonia vitripennis
Cited by: 9
Author(s): Nicola Cook, Urmi Trivedi, Bart A. Pannebakker, Mark Blaxter, Michael G. Ritchie, Eran Tauber, Tanya Sneddon, David M. Shuker
Software Mentions: 1
Published: almost 11 years ago

10.3389/fvets.2020.575865

Analysis of Transcriptomic Changes in Bovine Endometrial Stromal Cells Treated With Lipopolysaccharide
Cited by: 8
Author(s): Xuefen Ding, Haimiao Lv, Ling Deng, Wenju Hu, Peng Zhan, Chenbo Yan, Dexin Yang, Chao Tong, Xinzhuang Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fvets.2018.00198

Characterization of Spleen Transcriptome and Immunity Against Avian Colibacillosis After Immunization With Recombinant Attenuated Salmonella Vaccine Strains
Cited by: 9
Author(s): Zachary R. Stromberg, Angelica Van Goor, Graham A. J. Redweik, Melha Mellata
Software Mentions: 1
Published: about 8 years ago

10.1016/j.gpb.2018.12.012

Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica
Cited by: 6
Author(s): Changliang Shan, Guoliang Wang, Tao Liu, Xumin Wang, Cui Liu, Yishuai Jin, Hongxin Yin, Xin Xu, Jun Yu
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2020.611871

Exploring the Role of a Cytokinin-Activating Enzyme LONELY GUY in Unicellular Microalga Chlorella variabilis
Cited by: 8
Author(s): Saraswati Nayar
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009617

The RyfA small RNA regulates oxidative and osmotic stress responses and virulence in uropathogenic Escherichia coli
Cited by: 17
Author(s): Hicham Bessaiah, Pravil Pokharel, Hamza Loucif, Merve Kulbay, Charles Sasseville, Hajer Habouria, Sébastien Houle, Jacques Bernier, Éric Massé, Julien van Grevenynghe, Charles M. Dozois
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3307-9

The Drosophila transcriptional network is structured by microbiota
Cited by: 43
Author(s): A. Dobson, John M. Chaston, Angela E. Douglas
Software Mentions: 1
Published: almost 10 years ago

Projects: pypi: HTSeq

Science Score: 65/100

Bonuses:

Penalties:

Papers Mentioning HTSeq 3,071