pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.18632/oncotarget.19406

Isoxazole compound ML327 blocks MYC expression and tumor formation in neuroblastoma
Cited by: 2
Author(s): Eric J. Rellinger, Chandrasekhar Padmanabhan, Jingbo Qiao, Brian T. Craig, Hanbing An, Jing Zhu, Hernán Correa, Alex G. Waterson, Craig W. Lindsley, R. Daniel Beauchamp, Dai H. Chung
Software Mentions: 1
Published: over 7 years ago

10.15252/emmm.201607315

<scp>MG</scp>132‐induced progerin clearance is mediated by autophagy activation and splicing regulation
Cited by: 86
Author(s): Karim Harhouri, Claire Navarro, Danielle Depetris, Marie‐Geneviève Matteï, Xavier Nissan, Pierre Cau, Annachiara De Sandre‐Giovannoli, Nicolas Lévy
Software Mentions: 1
Published: over 7 years ago

10.15252/emmm.202012632

SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function
Cited by: 21
Author(s): Moo-Ho Bae, Junyeop Daniel Roh, You Joung Kim, Seong Soon Kim, Hye Min Han, Esther Yang, Hyojin Kang, Suho Lee, Jin Yong Kim, Ryeonghwa Kang, Hwajin Jung, Taesun Yoo, Hyosang Kim, Doyoun Kim, Heejeong Oh, Sungwook Han, Dayeon Kim, Jinju Han, Yong Chul Bae, Hyun Kim, Sunjoo Ahn, Andrew M. Chan, Daeyoup Lee, Jin Woo Kim, Eunjoon Kim
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12866-020-1705-2

An operon consisting of a P-type ATPase gene and a transcriptional regulator gene responsible for cadmium resistances in Bacillus vietamensis 151–6 and Bacillus marisflavi 151–25
Cited by: 18
Author(s): Xiaoxia Yu, Zundan Ding, Yafei Ji, Jintong Zhao, Xiaoqing Liu, Jian Tian, Ningfeng Wu, Yanting Fan
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-018-33838-5

Neurogenin3 phosphorylation controls reprogramming efficiency of pancreatic ductal organoids into endocrine cells
Cited by: 16
Author(s): Roberta Azzarelli, Steffen Rulands, Sonia Nestorowa, John Dwyfor Davies, Sara Campinoti, Sébastien Gillotin, Paola Bonfanti, Berthold Göttgens, Meritxell Huch, Benjamin D. Simons, Anna Philpott
Software Mentions: 1
Published: about 6 years ago

10.1016/j.ebiom.2017.10.024

Restricted Presence of POU6F2 in Human Corneal Endothelial Cells Uncovered by Extension of the Promoter-level Expression Atlas
Cited by: 7
Author(s): Masahito Yoshihara, Shotaro Hara, Motokazu Tsujikawa, Satoshi Kawasaki, Yoshihide Hayashizaki, Masayoshi Itoh, Hideya Kawaji, Kohji Nishida
Software Mentions: 1
Published: about 7 years ago

10.1186/s12885-021-08130-x

Analytical validation of the Percepta genomic sequencing classifier; an RNA next generation sequencing assay for the assessment of Lung Cancer risk of suspicious pulmonary nodules
Cited by: 4
Author(s): Marla Johnson, Esther Wu, Daniel G. Pankratz, Grazyna Fedorowicz, Jessica R. Anderson, Jie Ding, Michael Y. Wong, Manqiu Cao, Joshua E. Babiarz, Lori Lofaro, P. Sean Walsh, Giulia C. Kennedy, Jing Huang
Software Mentions: 1
Published: over 3 years ago

10.1093/database/bay075

RabGTD: a comprehensive database of rabbit genome and transcriptome
Cited by: 12
Author(s): Lu Zhou, Qingyu Xiao, Jie Bi, Zhen Wang, Yixue Li
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.dib.2018.08.188

Transcriptomic data on the role of PEST-domain-enriched tyrosine phosphatase in the regulation of antigen-mediated activation and antiallergic action of glucocorticoids in mast cells
Cited by: 1
Author(s): George K. Ainooson, Victor Gourain, Michael Stassen, Andrew C. B. Cato
Software Mentions: 1
Published: about 6 years ago

10.1016/j.dib.2020.106563

MicroRNA expression data of pluripotent and somatic cells and identification of cell type-specific MicroRNAs in pigs
Cited by: 0
Author(s): Jong‐Nam Oh, Dong Hoon Son, Kwang‐Hwan Choi, Jae Yeon Hwang, Dong‐Kyung Lee, Seung‐Hun Kim, Mingyun Lee, Jinsol Jeong, Gyung Cheol Choe, Chang Kyu Lee
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.dib.2017.01.001

Dataset for distribution of SIDER2 elements in the Leishmania major genome and transcriptome
Cited by: 0
Author(s): José Marı́a Requena, Alberto Rastrojo, Esther Garde, Manuel Carlos López, M. Carmen Thomas, Begoña Aguado
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2020.105432

RNA-seq data from whole rice grains of pigmented and non-pigmented Malaysian rice varieties
Cited by: 5
Author(s): Rabiatul-Adawiah Zainal-Abidin, Zamri Zainal, Zeti‐Azura Mohamed‐Hussein, Norliza Abu Bakar, Shahril Ab Razak, Sanimah Simoh, Yun Shin Sew
Software Mentions: 1
Published: over 4 years ago

10.1186/s12967-020-02298-9

Optimization of small RNA library preparation protocol from human urinary exosomes
Cited by: 12
Author(s): D. Abós Olivares, Javier Perez-Hernandez, D. Perez-Gil, Felipe Javier Chaves, Josep Redón, Raquel Cortés
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-019-0727-5

The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus
Cited by: 22
Author(s): Jolene M. Garber, Harald Nothaft, Ben Pluvinage, Martin Ståhl, Xiaoming Bian, Sara Porfírio, A Enríquez, James Butcher, Hua Huang, John Glushka, Eric Line, J.A. Gerlt, Parastoo Azadi, Alain Stintzi, A.B. Boraston, Christine M. Szymanski
Software Mentions: 1
Published: almost 5 years ago

10.1038/s42003-020-01295-4

Identification and characterization of a new isoform of small GTPase RhoE
Cited by: 1
Author(s): Yiwu Dai, Weijia Luo, Xiaojing Yue, Wencai Ma, Jing Wang, Jiang Chang
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-018-36771-9

Live imaging of leukocyte recruitment in a zebrafish model of chemical liver injury
Cited by: 15
Author(s): Michelina D. Stoddard, Cong Huang, Balázs Enyedi, Philipp Niethammer
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-021-02458-7

Impact and mechanism of sulphur-deficiency on modern wheat farming nitrogen-related sustainability and gliadin content
Cited by: 23
Author(s): Zitong Yu, Maoyun She, Ting Zheng, Dean Diepeveen, Shahidul Islam, Yun Zhao, Yingquan Zhang, Guixiang Tang, Yujuan Zhang, Jingjuan Zhang, Christopher L. Blanchard, Wenqi Ma
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-020-0853-0

Circulating re-entrant waves promote maturation of hiPSC-derived cardiomyocytes in self-organized tissue ring
Cited by: 29
Author(s): Junjun Li, Lu Zhang, Lei Yu, Itsunari Minami, Shigeru Miyagawa, Marcel Hörning, Ji Dong, Jing Qiao, Xiaodong Qu, Ying Hua, Nozomu Fujimoto, Yuji Shiba, Yang Zhao, Fuchou Tang, Chen Yong, Yoshiki Sawa, Chao Tang, Li Liu
Software Mentions: 1
Published: over 4 years ago

10.1002/ctm2.265

Reiterative infusions of MSCs improve pediatric osteogenesis imperfecta eliciting a pro‐osteogenic paracrine response: TERCELOI clinical trial
Cited by: 21
Author(s): Arantza Infante, Blanca Gener, Miguél Vázquez, Nerea Olivares, Ana Arrieta, Gema Grau, Isabel Llano, Luís Madero, Ana M. Bueno, Belén Sagastizábal, Daniela Gerovska, Marcos J. Araúzo‐Bravo, Itziar Astigarraga, Clara I. Rodrı́guez
Software Mentions: 1
Published: almost 4 years ago

10.18632/oncotarget.21672

Radiation-induced alternative transcripts as detected in total and polysome-bound mRNA
Cited by: 6
Author(s): Amy Wahba, Michaël Ryan, Uma Shankavaram, Kevin Camphausen, Philip J. Tofilon
Software Mentions: 1
Published: about 7 years ago

10.1002/ctm2.269

CD73 alleviates GSDMD‐mediated microglia pyroptosis in spinal cord injury through PI3K/AKT/Foxo1 signaling
Cited by: 90
Author(s): Shun Xu, Jin Wang, Junjie Zhong, Minghao Shao, Jianyuan Jiang, Jian Song, Wei Zhu, Fan Zhang, Haocheng Xu, Guangyu Xu, Yuxuan Zhang, Xiaosheng Ma, Feizhou Lyu
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12920-021-01006-w

A blood RNA transcriptome signature for COVID-19
Cited by: 14
Author(s): Philip Kam Weng Kwan, Gail Brenda Cross, Claire M. Naftalin, Bintou Ahmadou Ahidjo, Chee Keng Mok, Felic Fanusi, Intan Permata Sari, Siok Ching Chia, Shoban Krishna Kumar, Rawan AlAgha, Sai Meng Tham, Sophia Archuleta, October M. Sessions, Martin L. Hibberd, Nicholas I. Paton
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-38488-9

Fine-mapping sequence mutations with a major effect on oligosaccharide content in bovine milk
Cited by: 12
Author(s): Zhiqian Liu, Tingting Wang, J.E. Pryce, Iona M. MacLeod, Ben J. Hayes, Amanda J. Chamberlain, Christy Vander Jagt, Coralie M. Reich, Brett Mason, Simone Rochfort, Benjamin G. Cocks
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-39119-z

Sodium-activated potassium channels shape peripheral auditory function and activity of the primary auditory neurons in mice
Cited by: 29
Author(s): Daniël O. J. Reijntjes, Jeong Han Lee, Seojin Park, Nick Schubert, Marcel van Tuinen, Sarath Vijayakumar, Timothy A. Jones, Sherri M. Jones, Michael Anne Gratton, Xiaoming Xia, Ebenezer N. Yamoah, Sonja J. Pyott
Software Mentions: 1
Published: over 5 years ago

10.1002/cti2.1165

Novel combination immunotherapy for pancreatic cancer: potent anti‐tumor effects with CD40 agonist and interleukin‐15 treatment
Cited by: 24
Author(s): Jonas R.M. Van Audenaerde, Elly Marcq, Bianca von Scheidt, Ashleigh S Davey, Amanda J. Oliver, Jorrit De Waele, Delphine Quatannens, Jinthe Van Loenhout, Patrick Pauwels, Geert Roeyen, Filip Lardon, Clare Y. Slaney, Marc Peeters, Michael H. Kershaw, Phillip K. Darcy, Elke Smits
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-39125-1

Death of female flower microsporocytes progresses independently of meiosis-like process and can be accelerated by specific transcripts in Asparagus officinalis
Cited by: 5
Author(s): Mayui Ide, Kiyoshi Masuda, Daisuke Tsugama, Kazuo Fujino
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-019-0742-x

Epigenetic silencing of MEIS2 in prostate cancer recurrence
Cited by: 10
Author(s): Maibritt Nørgaard, Christa Haldrup, Marianne Bjerre, Søren Høyer, Benedicte Parm Ulhøi, Michael Borre, Karina D. Sørensen
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-021-08528-7

LINC01287 facilitates proliferation, migration, invasion and EMT of colon cancer cells via miR-4500/MAP3K13 pathway
Cited by: 7
Author(s): Dazhi Fu, Yongjun Ren, Chunxiao Wang, Lei Yu, Rui Yu
Software Mentions: 1
Published: over 3 years ago

10.1186/s12896-015-0155-7

Evaluating whole transcriptome amplification for gene profiling experiments using RNA-Seq
Cited by: 23
Author(s): Sheena L. Faherty, C. Ryan Campbell, Peter A. Larsen, Anne D. Yoder
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-40501-0

RNA-seq of Isolated Chromaffin Cells Highlights the Role of Sex-Linked and Imprinted Genes in Adrenal Medulla Development
Cited by: 11
Author(s): Wing Man Chan, Masayuki Komada, Toshiaki Fukushima, E. Michelle Southard‐Smith, Colin Anderson, Matthew J. Wakefield
Software Mentions: 1
Published: over 5 years ago

10.3390/cells10071809

Morpho-Physiological and Transcriptome Changes in Tomato Anthers of Different Developmental Stages under Drought Stress
Cited by: 11
Author(s): Anthony Tumbeh Lamin-Samu, Mohamed Farghal, Muhammad Ali, Gang Lü
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-41236-8

Complex regulatory network allows Myriophyllum aquaticum to thrive under high-concentration ammonia toxicity
Cited by: 7
Author(s): Rui Wang, Shengjun Xu, Hanjun Sun, Shugeng Feng, Cancan Jiang, Sining Zhou, Shimin Wu, Guoqiang Zhuang, Baodong Chen, Bai Zhang, Zhihui Bai
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-40747-8

miRNA profiling of urinary exosomes to assess the progression of acute kidney injury
Cited by: 57
Author(s): Hiroko Sonoda, Byung Rho Lee, Ki Hoon Park, Deepak Nihalani, Je‐Hyun Yoon, Masahiro Ikeda, Sang Ho Kwon
Software Mentions: 1
Published: over 5 years ago

10.3390/cells8121623

Vascular PPARβ/δ Promotes Tumor Angiogenesis and Progression
Cited by: 24
Author(s): Kay-Dietrich Wagner, Siyue Du, Luc Martin, Nathalie Leccia, Jean‐François Michiels, Nicole Wagner
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-41616-0

Genome-wide Analysis Reveals DNA Methylation Alterations in Obesity Associated with High Risk of Colorectal Cancer
Cited by: 15
Author(s): Longlong Dong, Li Ma, Helena Glória, Hongmei Ren
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41692-2

An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome
Cited by: 24
Author(s): Paula Josefina Gómez-González, Núria Andreu, Jody Phelan, Paola Flórez de Sessions, Judith R. Glynn, Amelia C. Crampin, Susana Campino, Philip D. Butcher, Martin L. Hibberd, Taane G. Clark
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41132-1

Transcriptomic Diversification of Granulosa Cells during Follicular Development in Chicken
Cited by: 24
Author(s): Guoqiang Zhu, Chao Fang, Jing Li, Chunheng Mo, Yajun Wang, Juan Li
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9061399

RNA-Sequencing-Based Transcriptomic Analysis Reveals a Role for Annexin-A1 in Classical and Influenza A Virus-Induced Autophagy
Cited by: 6
Author(s): Jianzhou Cui, Dhakshayini Morgan, Dao Han Cheng, Sok Lin Foo, Gracemary Yap, Patrick B. Ampomah, Satyam Arora, Karishma Sachaphibulkij, Balamurugan Periaswamy, Anna‐Marie Fairhurst, Paola Flórez de Sessions, Lina H.K. Lim
Software Mentions: 1
Published: over 4 years ago

10.3390/cells8121612

Effect of Ethylene on Cell Wall and Lipid Metabolism during Alleviation of Postharvest Chilling Injury in Peach
Cited by: 41
Author(s): Yanjian Zhu, Ke Wang, Chunxia Wu, Yun Zhao, Yin X, Bo Zhang, Don Grierson, Kunsong Chen, Changjie Xu
Software Mentions: 1
Published: almost 5 years ago

10.3390/cells9041014

Characterising the Transcriptional and Translational Impact of the Schizophrenia-Associated miR-1271-5p in Neuronal Cells
Cited by: 5
Author(s): Dylan Kiltschewskij, Michael Geaghan, Murray J. Cairns
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0172044

Transcriptomic responses to environmental temperature by turtles with temperature-dependent and genotypic sex determination assessed by RNAseq inform the genetic architecture of embryonic gonadal development
Cited by: 45
Author(s): S. Radhakrishnan, Robert Literman, Jennifer L. Neuwald, Andrew J. Severin, Nicole Valenzuela
Software Mentions: 1
Published: over 7 years ago

10.1111/acel.13407

Chloride channel accessory 1 integrates chloride channel activity and mTORC1 in aging‐related kidney injury
Cited by: 8
Author(s): Hak‐Joo Lee, Andrew Donati, Denis Féliers, Yuyang Sun, Yanli Ding, Muniswamy Madesh, Adam B. Salmon, Yuji Ikeno, Corinna N. Ross, Christopher O’Connor, Wenjun Ju, Markus Bitzer, Yidong Chen, Goutam Ghosh Choudhury, Brij B. Singh, Kumar Sharma, Balakuntalam S. Kasinath
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-43413-1

Thallium(I) treatment induces nucleolar stress to stop protein synthesis and cell growth
Cited by: 18
Author(s): Yu‐Min Chou, Kai-Yin Lo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0201618

Comparative transcriptomics reveals specific responding genes associated with atherosclerosis in rabbit and mouse models
Cited by: 2
Author(s): Liying Wu, Qianlan Yao, Ping Lin, Yixue Li, Hong Li
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22041768

Adipose Tissue Gene Expression of Entire Male, Immunocastrated and Surgically Castrated Pigs
Cited by: 4
Author(s): Klavdija Poklukar, Marjeta Čandek-Potokar, Milka Vrecl, Nina Batorek-Lukač, Gregor Fazarinc, Kevin Kress, Volker Stefanski, Martin Škrlep
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0199077

Transcriptome analysis of near-isogenic line provides novel insights into genes associated with panicle traits regulation in rice
Cited by: 8
Author(s): Wuhan Zhang, Pingyong Sun, Qingfang He, Shu Man Fu, Huafeng Deng
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-44339-4

PCA-PAM50 improves consistency between breast cancer intrinsic and clinical subtyping reclassifying a subset of luminal A tumors as luminal B
Cited by: 32
Author(s): Praveen Kumar, Jianfang Liu, Jeffrey A. Hooke, Albert J. Kovatich, Leonid Kvecher, Craig D. Shriver, Hai Hu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12865-020-00356-x

Involvement of ABC-transporters and acyltransferase 1 in intracellular cholesterol-mediated autophagy in bovine alveolar macrophages in response to the Bacillus Calmette-Guerin (BCG) infection
Cited by: 7
Author(s): Jinrui Xu, Yongzhao Zhou, Yi Yang, Cuiping Lv, Xiaoming Liu, Yujiong Wang
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0110398

Gene Expression Differences among Three Neurospora Species Reveal Genes Required for Sexual Reproduction in Neurospora crassa
Cited by: 33
Author(s): Nina A. Lehr, Zheng Wang, Ning Li, David Hewitt, Francesc López-Giráldez, Frances Trail, Jeffrey P. Townsend
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0152425

FCGR2C Polymorphisms Associated with HIV-1 Vaccine Protection Are Linked to Altered Gene Expression of Fc-γ Receptors in Human B Cells
Cited by: 11
Author(s): Xinxia Peng, Shuying S. Li, Peter B. Gilbert, Daniel E. Geraghty, Michael G. Katze
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0126085

ATOH1 Can Regulate the Tumorigenicity of Gastric Cancer Cells by Inducing the Differentiation of Cancer Stem Cells
Cited by: 14
Author(s): Myoung‐Eun Han, Su‐Jin Baek, Seon‐Young Kim, Chi‐Dug Kang, Sae‐Ock Oh
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0179477

Genome-wide identification of gene expression in contrasting maize inbred lines under field drought conditions reveals the significance of transcription factors in drought tolerance
Cited by: 40
Author(s): Xiaojing Zhang, Xuyang Liu, Dengfeng Zhang, Huaijun Tang, Bo Sun, Chunhui Li, Luyang Hao, Cheng Liu, Yongxiang Li, Yunsu Shi, Xiaoqing Xie, Yifu Song, Tianyu Wang, Li Yu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0171414

Unique genetic responses revealed in RNA-seq of the spleen of chickens stimulated with lipopolysaccharide and short-term heat
Cited by: 18
Author(s): Angelica Van Goor, C. M. Ashwell, Michael E. Persia, Max F. Rothschild, Carl J. Schmidt, Susan J. Lamont
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0190987

Myocardium of patients with dilated cardiomyopathy presents altered expression of genes involved in thyroid hormone biosynthesis
Cited by: 15
Author(s): Carolina Gil-Cayuela, Ana Ortega, Estefanía Tarazón, Luis Martínez‐Dolz, Juan Cinca, José Ramón González-Juanatey, Francisca Lago, Esther Roselló‐Lletí, Miguel Rivera, Manuel Portolés
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0217066

Transcriptome profiling revealed diverse gene expression patterns in poplar (Populus × euramericana) under different planting densities
Cited by: 9
Author(s): Kun Ning, Changjun Ding, Qinjun Huang, Weixi Zhang, Chengchao Yang, Dejun Liang, Ruting Fan, Xiaohua Su
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-99307-8

Distinct roles of haspin in stem cell division and male gametogenesis
Cited by: 12
Author(s): Katerina Soupsana, Eleftheria Karanika, Fani Kiosse, Anastasia Christogianni, Yiorgos Sfikas, Pantelis Topalis, Anna Batistatou, Zoi Kanaki, Apostolos Klinakis, Anastasia S. Politou, Spyros D. Georgatos
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0249379

Single START-domain protein Mtsp17 is involved in transcriptional regulation in Mycobacterium smegmatis
Cited by: 1
Author(s): Ying Zhou, Tianying Zhong, Wenjing Wei, Zhuhua Wu, Anping Yang, Ning Liu, Ming Wang, Xiaoli Zhang
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.103901

Identification of a hippocampal lncRNA-regulating network in cognitive dysfunction caused by chronic cerebral hypoperfusion
Cited by: 4
Author(s): Zhiliang Yao, Jing Wang, Bing-Zhen Shen, Yutong Li, Xiaoli Yao, Shaofeng Zhang, Yong Zhang, Jichang Hu, Yanchun Xie
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22052564

Novel Transcriptome Study and Detection of Metabolic Variations in UV-B-Treated Date Palm (Phoenix dactylifera cv. Khalas)
Cited by: 9
Author(s): Mohamed Maher, Hasan Ahmad, Elsayed Nishawy, Yufei Li, Jie Luo
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0253545

Low expression of CIP4 in predicting worse overall survival: A potential biomarker for laryngeal cancer
Cited by: 0
Author(s): Lucheng Fang, Licai Shi, Wen Wang, Xinglong Wu, Tingting Hu, Yideng Huang, Xingwang Rao
Software Mentions: 1
Published: about 3 years ago

10.1186/s12864-020-07004-z

A new mechanism for a familiar mutation – bovine DGAT1 K232A modulates gene expression through multi-junction exon splice enhancement
Cited by: 11
Author(s): Tania Fink, Thomas Lopdell, Kathryn Tiplady, Renee Handley, Thomas Johnson, Richard Spelman, Stephen R. Davis, Russell G. Snell, Mathew D Littlejohn
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0065629

Mechanisms That Determine the Internal Environment of the Developing Brain: A Transcriptomic, Functional and Ultrastructural Approach
Cited by: 62
Author(s): Shane A. Liddelow, Katarzyna M. Dzięgielewska, C. Joakim Ek, Mark D. Habgood, Hannelore Bauer, Hans-Christian Bauer, Helen Lindsay, Matthew J. Wakefield, Nathalie Strazielle, Ingrid Kratzer, Kjeld Møllgård, Jean-François Ghersi-Egea, NR Saunders
Software Mentions: 1
Published: over 11 years ago

10.1186/s12915-016-0234-9

Detection of pup odors by non-canonical adult vomeronasal neurons expressing an odorant receptor gene is influenced by sex and parenting status
Cited by: 17
Author(s): Thiago S. Nakahara, Leonardo Minete Cardozo, Ximena Ibarra-Soria, Andrew Daniel Bard, Vinicius Miessler de Andrade Carvalho, Guilherme Ziegler Trintinalia, Darren W. Logan, Fábio Papes
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0153970

Combined Gene Expression and RNAi Screening to Identify Alkylation Damage Survival Pathways from Fly to Human
Cited by: 8
Author(s): Alfeu Zanotto-Filho, Dashnamoorthy Ravi, Eva Loranc, Luís Henrique Trentin de Souza, José Cláudio Fonseca Moreira, Uthra Suresh, Yidong Chen, Alexander J.R. Bishop
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0214497

Comprehensive RNA-Seq profiling of the lung transcriptome of Bashbay sheep in response to experimental Mycoplasma ovipneumoniae infection
Cited by: 9
Author(s): Zhenhua Du, Yanming Sun, Jixue Wang, Haiyan Liu, Yi Yang, Ning Zhao
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-020-06842-1

Genome-wide identification and characterization of multiple C2 domains and transmembrane region proteins in Gossypium hirsutum
Cited by: 6
Author(s): Pengbo Hao, Hantao Wang, Liang Ma, Aimin Wu, Pengyun Chen, Shuaishuai Cheng, Hengling Wei, Shuxun Yu
Software Mentions: 1
Published: over 4 years ago

10.1186/s12915-021-01142-w

Competition-based screening helps to secure the evolutionary stability of a defensive microbiome
Cited by: 8
Author(s): Sarah F. Worsley, Tabitha M. Innocent, Neil A. Holmes, Mahmoud M. Al‐Bassam, Morten Schiøtt, Barrie Wilkinson, J. Colin Murrell, Jacobus J. Boomsma, Douglas W. Yu, Matthew I. Hutchings
Software Mentions: 1
Published: about 3 years ago

10.3390/ijms22084147

Maternal Heat Stress Alters Expression of Genes Associated with Nutrient Transport Activity and Metabolism in Female Placentae from Mid-Gestating Pigs
Cited by: 10
Author(s): Weicheng Zhao, Fan Liu, C Marth, Mark P. Green, Hoang Viet Le, Brian J Leury, A. W. Bell, Frank R. Dunshea, Jeremy J. Cottrell
Software Mentions: 1
Published: over 3 years ago

10.1186/s13287-020-01814-4

METTL1-mediated m7G methylation maintains pluripotency in human stem cells and limits mesoderm differentiation and vascular development
Cited by: 36
Author(s): Yujie Deng, Zhenhua Zhou, Weidong Ji, Shuibin Lin, Min Wang
Software Mentions: 1
Published: over 4 years ago

10.1186/s13287-020-01984-1

Melphalan induces cardiotoxicity through oxidative stress in cardiomyocytes derived from human induced pluripotent stem cells
Cited by: 12
Author(s): Rui Li, Dong Liu, Fangxu Sun, Antonio Rampoldi, Joshua T. Maxwell, Ronghu Wu, Peter Fischbach, Sharon M. Castellino, Yuhong Du, Haian Fu, Anant Mandawat, Chunhui Xu
Software Mentions: 1
Published: about 4 years ago

10.1186/s13287-021-02253-5

Apoptosis repressor with caspase recruitment domain (ARC) promotes bone regeneration of bone marrow-derived mesenchymal stem cells by activating Fgf-2/PI3K/Akt signaling
Cited by: 6
Author(s): Longwei Hu, Yang Wang, Haiyang Pan, Kathreena Kadir, Ji Wen, Siyi Li, Chenping Zhang
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-16-S15-P1

Synaptic plasticity in infralimbic cortex mediates socially-acquired nicotine self-administration
Cited by: 17
Author(s): Hao Chen, Tengfei Wang, Wenyan Han
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0249108

Integrating transcriptome and metabolome analyses of the response to cold stress in pumpkin (Cucurbita maxima)
Cited by: 8
Author(s): Fengmei Li, Xiaoxuan Lu, Pengfei Duan, Yanjiao Liang, Jian Cui
Software Mentions: 1
Published: over 3 years ago

10.1155/2019/9194560

Isolation, Characterization, and Safety Evaluation of Human Skin-Derived Precursors from an Adherent Monolayer Culture System
Cited by: 4
Author(s): Ru Dai, Hua Wei, Wei Chen, Li Xiong, Li Li, Yiming Li
Software Mentions: 1
Published: over 5 years ago

10.1007/s00122-016-2727-x

Suppressed recombination and unique candidate genes in the divergent haplotype encoding Fhb1, a major Fusarium head blight resistance locus in wheat
Cited by: 83
Author(s): Wolfgang Schweiger, Barbara Steiner, Sonia Vautrin, Thomas Nußbaumer, Gerald Siegwart, M. Zamini, Florian Jungreithmeier, Verena Gratl, Marc Lemmens, Klaus Mayer, Hélène Berges, Gerhard Adam, Hermann Buerstmayr
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms22105258

PSII Activity Was Inhibited at Flowering Stage with Developing Black Bracts of Oat
Cited by: 1
Author(s): Bei Liu, Di Zhang, Ming Sun, Manli Li, Xiqing Ma, Shangang Jia, Peisheng Mao
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0161852

Transcriptional Differences between Diapausing and Non-Diapausing D. montana Females Reared under the Same Photoperiod and Temperature
Cited by: 32
Author(s): Maaria Kankare, Darren J. Parker, Mikko Merisalo, Tiina S. Salminen, Anneli Hoikkala
Software Mentions: 1
Published: about 8 years ago

10.1186/s12859-017-1526-y

Comprehensive evaluation of RNA-seq quantification methods for linearity
Cited by: 46
Author(s): Haijing Jin, Ying-Wooi Wan, Zhandong Liu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0176879

Ubiquitin carboxyl-terminal esterase L1 (UCHL1) is associated with stem-like cancer cell functions in pediatric high-grade glioma
Cited by: 26
Author(s): Patricia C. Sánchez-Díaz, Judy C. Chang, Emily S. Moses, Tu Van Dao, Yidong Chen, Jaclyn Y. Hung
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0196387

Statins impact primary embryonic mouse neural stem cell survival, cell death, and fate through distinct mechanisms
Cited by: 12
Author(s): Ross Carson, Anthony C. Rudine, Serena J. Tally, Alexis Franks, K. Frahm, Jacob Waldman, Neerupma Silswal, Suban Burale, J. Phan, Uma Chandran, A. Paula Monaghan, Donald B. DeFranco
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-020-06852-z

Transcriptome analysis of genes related to gonad differentiation and development in Muscovy ducks
Cited by: 12
Author(s): Ding-Ping Bai, Yue Chen, Yuqiong Hu, Wenfeng He, Yu-Zhu Shi, Qin-Ming Fan, Ru-Tang Luo, Ang Li
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0216977

Comparative analysis of the accelerated aged seed transcriptome profiles of two maize chromosome segment substitution lines
Cited by: 8
Author(s): Li Li, Feng Wang, Xuhui Li, Yixuan Peng, Hongwei Zhang, Stefan Hey, Guoying Wang, Jianhua Wang, Rong Gu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0099080

Age-Dependent Transcriptome and Proteome Following Transection of Neonatal Spinal Cord of Monodelphis domestica (South American Grey Short-Tailed Opossum)
Cited by: 24
Author(s): NR Saunders, Natassya M. Noor, Katarzyna M. Dzięgielewska, Benjamin Wheaton, Shane A. Liddelow, David Steer, C. Joakim Ek, Mark D. Habgood, Matthew J. Wakefield, Helen Lindsay, Jessie Truettner, Robert D. Miller, Allan E. Smith, W. Dalton Dietrich
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms22115422

Prolonged Transcriptional Consequences in Survivors of Sepsis
Cited by: 3
Author(s): Krzysztof Laudański, James Soh, Matthew DiMeglio, Kathleen E. Sullivan
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0147236

Expression of the Long Non-Coding RNA HOTAIR Correlates with Disease Progression in Bladder Cancer and Is Contained in Bladder Cancer Patient Urinary Exosomes
Cited by: 208
Author(s): Claudia Berrondo, Jonathan Flax, Victor Kucherov, Aisha L. Siebert, Thomas Osinski, Alex Rosenberg, Christopher Fucile, Samuel Richheimer, Carla Beckham
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0121164

Comparative Transcriptome Analysis of Genes Involved in Anthocyanin Biosynthesis in the Red and Yellow Fruits of Sweet Cherry (Prunus avium L.)
Cited by: 82
Author(s): Hairong Wei, Xin Chen, Xiaojuan Zong, Huairui Shu, Dongsheng Gao, Qingzhong Li
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-2960-3

The human olfactory transcriptome
Cited by: 86
Author(s): Tsviya Olender, Ifat Keydar, Jayant M. Pinto, Pavel Tatarskyy, Anna Alkelai, Ming-Shan Chien, Simon Fishilevich, Diego Restrepo, Hiroaki Matsunami, Yoav Gilad, Doron Lancet
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0177852

Effect of dietary restriction and subsequent re-alimentation on the transcriptional profile of bovine ruminal epithelium
Cited by: 16
Author(s): Kate Keogh, Sinéad M. Waters, Paul Cormican, A. K. Kelly, Emma O’Shea, David A. Kenny
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-2061-8

Comprehensive transcriptional landscape of aging mouse liver
Cited by: 91
Author(s): Ryan R. White, Brandon Milholland, Sheila L. MacRae, Mingyan Lin, Deyou Zheng, Jan Vijg
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0209982

Fine mapping of the major QTL for seed coat color in Brassica rapa var. Yellow Sarson by use of NIL populations and transcriptome sequencing for identification of the candidate genes
Cited by: 12
Author(s): Hongwei Zhao, Urmila Basu, Berisso Kebede, Cunmin Qu, Jiana Li, Habibur Rahman
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0192673

Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs
Cited by: 13
Author(s): Markus Drag, Mathias Brygger Hansen, Haja N. Kadarmideen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0179560

Comparative transcriptomes analysis of the wing disc between two silkworm strains with different size of wings
Cited by: 6
Author(s): Jing Zhang, Danso Blessing, Chenyu Wu, Na Liu, Juan Li, Sheng Qin, Muwang Li
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0200427

Transcriptome sequencing and ITRAQ reveal the detoxification mechanism of Bacillus GJ1, a potential biocontrol agent for Huanglongbing
Cited by: 21
Author(s): Jizhou Tang, Yuanxi Ding, Jing Nan, Xiangyu Yang, Liang Sun, Xiuyun Zhao, Ling Jiang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0006309

Three-dimensional hepatocyte culture system for the study of Echinococcus multilocularis larval development
Cited by: 8
Author(s): Li Li, Bing Chen, Hong‐Bin Yan, Yannan Zhao, Zhongzi Lou, Jianqiu Li, Bao‐Quan Fu, Xing‐Quan Zhu, Donald P. McManus, Jianwu Dai, Wan‐Zhong Jia
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0008516

What happens after a blood meal? A transcriptome analysis of the main tissues involved in egg production in Rhodnius prolixus, an insect vector of Chagas disease
Cited by: 21
Author(s): Jimena Leyria, Ian Orchard, Angela B. Lange
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-020-07138-0

Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghum
Cited by: 18
Author(s): Fuyou Fu, Gezahegn Girma, Tesfaye Mengiste
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pgen.1006088

Msa1 and Msa2 Modulate G1-Specific Transcription to Promote G1 Arrest and the Transition to Quiescence in Budding Yeast
Cited by: 21
Author(s): Shawna Miles, Matthew W. Croxford, Amali P. Abeysinghe, Linda Breeden
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1007379

Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging
Cited by: 32
Author(s): Antti Aalto, Ian Nicastro, James P. Broughton, Laura B. Chipman, William P. Schreiner, Jerry S. Chen, Amy E. Pasquinelli
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1009174

Phase-related differences in egg production of the migratory locust regulated by differential oosorption through microRNA-34 targeting activinβ
Cited by: 5
Author(s): Lan Zhao, Wei Guo, Feng Jiang, Jing He, Hongran Liu, Juan Song, Dan Yu, Le Kang
Software Mentions: 1
Published: almost 4 years ago

10.1128/mBio.01173-16

Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization
Cited by: 23
Author(s): Elena Capel, Aldert Zomer, Thomas Nußbaumer, Christine Bole, Brigitte Izac, Eric Frapy, Julie Meyer, Haniaa Bouzinba-Ségard, Emmanuelle Bille, Anne Jamet, Anne Cavau, Franck Letourneur, Sandrine Bourdoulous, Thomas Rattei, Xavier Nassif, Mathieu Coureuil
Software Mentions: 1
Published: about 8 years ago

Projects: pypi: HTSeq

Papers Mentioning HTSeq 3,071