pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.1007/s10532-020-09917-8

Transcriptomic response of Gordonia sp. strain NB4-1Y when provided with 6:2 fluorotelomer sulfonamidoalkyl betaine or 6:2 fluorotelomer sulfonate as sole sulfur source
Cited by: 6
Author(s): Eric Bottos, Ebtihal Y Alshabib, Dayton M.J. Shaw, Breanne McAmmond, Aarti Sharma, Danae M. Suchan, Andrew D. S. Cameron, Jonathan D. Van Hamme
Software Mentions: 1
Published: almost 6 years ago

10.3390/antibiotics10030246

Antimicrobial Effect and the Mechanism of Diallyl Trisulfide against Campylobacter jejuni
Cited by: 11
Author(s): Yuanyue Tang, Fengming Li, Danan Gu, Wenyan Wang, Jinlin Huang, Xinan Jiao
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.21735

Lack of IL-1R8 in neurons causes hyperactivation of IL-1 receptor pathway and induces MECP2-dependent synaptic defects
Cited by: 31
Author(s): Romana Tomasoni, Raffaella Morini, José P. López‐Atalaya, Irene Corradini, Alice Canzi, Marco Rasile, Cristina Mantovani, Davide Pozzi, Cecília Garlanda, Alberto Mantovani, Elisabetta Menna, Ángel Barco, Michela Matteoli
Software Mentions: 1
Published: over 9 years ago

10.1186/s13104-020-4936-2

Reliability and correlation of mixture cell correction in methylomic and transcriptomic blood data
Cited by: 4
Author(s): Boris Chaumette, Oussama Kébir, Patrick A. Dion, Guy A. Rouleau, Marie‐Odile Krebs
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22041768

Adipose Tissue Gene Expression of Entire Male, Immunocastrated and Surgically Castrated Pigs
Cited by: 4
Author(s): Klavdija Poklukar, Marjeta Čandek-Potokar, Milka Vrecl, Nina Batorek-Lukač, Gregor Fazarinc, Kevin Kress, Volker Stefanski, Martin Škrlep
Software Mentions: 1
Published: over 5 years ago

10.1186/s13104-019-4671-8

Expression of microRNA in human retinal pigment epithelial cells following infection with Zaire ebolavirus
Cited by: 8
Author(s): Genevieve F. Oliver, Ayla Valinezhad Orang, Binoy Appukuttan, Shashikanth Marri, Michael Michael, Glenn A. Marsh, Justine R. Smith
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13104-018-3165-4

Increased whole blood FFA2/GPR43 receptor expression is associated with increased 30-day survival in patients with sepsis
Cited by: 7
Author(s): Zyad J. Carr, Andry Van de Louw, Graham Fehr, Jialiu D. Li, Allen R. Kunselman, Victor Ruiz‐Velasco
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-014-0335-y

Distinct transcriptional profiles of ozone stress in soybean (Glycine max) flowers and pods
Cited by: 10
Author(s): Courtney P. Leisner, Ray Ming, Elizabeth A. Ainsworth
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-021-07985-5

Morphological characteristics and transcriptome analysis at different anther development stages of the male sterile mutant MS7–2 in Wucai (Brassica campestris L.)
Cited by: 4
Author(s): Jian Wang, Yitao Yang, Lei Zhang, Shaoxing Wang, Lingyun Yuan, Guohu Chen, Xiaoyan Tang, Jinfeng Hou, Shidong Zhu, Chenggang Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-014-0249-8

Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris)
Cited by: 92
Author(s): Ralf Stracke, Daniela Holtgräwe, Jessica Schneider, Boas Pucker, Thomas Rosleff Sörensen, Bernd Weißhaar
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12870-020-02425-0

Transcriptomic analysis reveals mechanism of light-sensitive albinism in tea plant Camellia sinensis ‘Huangjinju’
Cited by: 20
Author(s): Xinfeng Jiang, Hua Zhao, Fei Guo, Xuping Shi, Chuan Ye, Ping Yang, Benying Liu, Dejiang Ni
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-019-2010-9

GhFAD2–3 is required for anther development in Gossypium hirsutum
Cited by: 9
Author(s): Liping Feng, Lihong Ma, Youwu Wang, Yanjun Li, Xinyu Zhang, Fei Xue, Xiaoqin Nie, Qian-Hao Zhu, Jie Sun
Software Mentions: 1
Published: about 7 years ago

10.1126/sciadv.aay5366

A psychological stressor conveyed by appetite-linked neurons
Cited by: 11
Author(s): Eun Jeong Lee, Naresh K. Hanchate, Kunio Kondoh, Ai Phuong Tong, Donghui Kuang, Andrew Spray, Xiaolan Ye, Linda B. Buck
Software Mentions: 1
Published: over 6 years ago

10.1186/s12284-021-00509-5

Panicle Apical Abortion 3 Controls Panicle Development and Seed Size in Rice
Cited by: 7
Author(s): Fang Yang, Xiong Mao, Mingjiang Huang, Zhongcheng Li, Ziyi Wang, Hao Zhu, Rui Chen, Lu Lu, Qinglan Cheng, Yan Wang, Jun Tang, Hui Zhuang, Yunfeng Li
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-018-1449-4

Transcriptome analysis of radish sprouts hypocotyls reveals the regulatory role of hydrogen-rich water in anthocyanin biosynthesis under UV-A
Cited by: 24
Author(s): Xiaoyan Zhang, Nana Su, Jia Li, Jing Tian, Han Li, Huang Lei, Zhenguo Shen, Jin Chen
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12958-020-00659-z

Sphingosine 1-phosphate protects against radiation-induced ovarian injury in female rats—impact on mitochondrial-related genes
Cited by: 6
Author(s): Jiahui Zhao, Shuyun Zhang, Liesong Chen, Xiaolong Liu, Haihong Su, Lili Chen, Li Yang, Hong Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1186/1477-7827-11-3

Changes in the transcriptome of morula-stage bovine embryos caused by heat shock: relationship to developmental acquisition of thermotolerance
Cited by: 42
Author(s): Miki Sakatani, L. Bonilla, Kyle B. Dobbs, J. Block, Manabu Ozawa, Savita Shanker, Jiqiang Yao, Peter J. Hansen
Software Mentions: 1
Published: over 13 years ago

10.1186/s13014-018-1075-1

RNA-sequencing in non-small cell lung cancer shows gene downregulation of therapeutic targets in tumor tissue compared to non-malignant lung tissue
Cited by: 7
Author(s): Kobe Reynders, Els Wauters, Matthieu Moisse, Herbert Decaluwé, Paul De Leyn, Stéphanie Peeters, Maarten Lambrecht, Kristiaan Nackaerts, Christophe Dooms, Wim Janssens, Johan Vansteenkiste, Diether Lambrechts, Dirk De Ruysscher
Software Mentions: 1
Published: about 8 years ago

10.1007/s13238-019-0637-9

Core pluripotency factors promote glycolysis of human embryonic stem cells by activating GLUT1 enhancer
Cited by: 19
Author(s): Lili Yu, Kaiyuan Ji, Jian Zhang, Yan-Xia Xu, Ying Ye, Taoyi Mai, Shen Xu, Qian-bing Zhang, Kangde Yao, Yang Xu
Software Mentions: 1
Published: over 7 years ago

10.1073/pnas.2100559118

Transposon-mediated insertional mutagenesis unmasks recessive insecticide resistance in the aphid Myzus persicae
Cited by: 15
Author(s): Michela Panini, Olga Chiesa, Bartlomiej J. Troczka, Mark D. Mallott, Gian Carlo Manicardi, Stefano Cassanelli, Filippo Cominelli, Alex Hayward, Emanuele Mazzoni, Chris Bass
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-019-2176-1

Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis
Cited by: 21
Author(s): Qian Wu, Mingliang Du, Jie Wu, Ning Wang, Baomin Wang, Fangjun Li, Xiaoli Tian, Zhaohu Li
Software Mentions: 1
Published: almost 7 years ago

10.1073/pnas.2024846118

Substrate discrimination and quality control require each catalytic activity of TRAMP and the nuclear RNA exosome
Cited by: 6
Author(s): Mom Das, Dimitrios Zattas, John C. Zinder, Elizabeth V. Wasmuth, Julien Henri, Christopher D. Lima
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009790

Efficient Dicer processing of virus-derived double-stranded RNAs and its modulation by RIG-I-like receptor LGP2
Cited by: 14
Author(s): Yuqiang Zhang, Yan Xu, Yunpeng Dai, Zhe Li, Jiaxing Wang, Yang Liu, Yanxin Ren, Hua Wang, Wan-xiang Li, Jinfeng Lü, Shou‐Wei Ding, Li Yang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41597-019-0185-4

Longitudinal RNA-Seq analysis of acute and chronic neurogenic skeletal muscle atrophy
Cited by: 14
Author(s): Jeffrey T. Ehmsen, Riki Kawaguchi, Ruifa Mi, Giovanni Coppola, Ahmet Höke
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1009617

The RyfA small RNA regulates oxidative and osmotic stress responses and virulence in uropathogenic Escherichia coli
Cited by: 17
Author(s): Hicham Bessaiah, Pravil Pokharel, Hamza Loucif, Merve Kulbay, Charles Sasseville, Hajer Habouria, Sébastien Houle, Jacques Bernier, Éric Massé, Julien van Grevenynghe, Charles M. Dozois
Software Mentions: 1
Published: over 5 years ago

10.1016/j.gpb.2018.12.012

Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica
Cited by: 6
Author(s): Changliang Shan, Guoliang Wang, Tao Liu, Xumin Wang, Cui Liu, Yishuai Jin, Hongxin Yin, Xin Xu, Jun Yu
Software Mentions: 1
Published: about 6 years ago

10.1186/s13059-018-1418-0

Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing
Cited by: 86
Author(s): Seyed Yahya Anvar, G. Allard, Elizabeth Tseng, Gloria Sheynkman, Eleonora de Klerk, Martijn Vermaat, Raymund H. Yin, Hans Johansson, Yavuz Ariyürek, Johan T. den Dunnen, Stephen W. Turner, Peter A.C. ’t Hoen
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-014-0523-y

An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era
Cited by: 129
Author(s): Zhenqiang Su, Hong Fang, Huixiao Hong, Leming Shi, Wenqian Zhang, Wenwei Zhang, Yanyan Zhang, Zirui Dong, Lee Lancashire, Marina Bessarabova, Xi Yang, Baitang Ning, Binsheng Gong, Joe Meehan, Joshua Xu, Weigong Ge, Roger Perkins, Matthias Fischer, Weida Tong
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12711-014-0074-4

Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions
Cited by: 106
Author(s): Kathryn E. Kemper, Coralie M. Reich, P.J. Bowman, Christy J. Vander Jagt, Amanda J. Chamberlain, Brett Mason, Ben J. Hayes, Michael E. Goddard
Software Mentions: 1
Published: over 11 years ago

10.1038/srep10562

Effects of Tris(1,3-dichloro-2-propyl) Phosphate (TDCPP) in Tetrahymena Thermophila: Targeting the Ribosome
Cited by: 30
Author(s): Jing Li, John P. Giesy, Lei Yu, Guangyu Li, Chunsheng Liu
Software Mentions: 1
Published: over 11 years ago

10.1186/s12870-021-02993-9

Comparative transcriptomic analysis of candidate effectors to explore the infection and survival strategy of Bursaphelenchus xylophilus during different interaction stages with pine trees
Cited by: 7
Author(s): Longjiao Hu, Xiao‐Qin Wu, Xiaolei Ding, Jian‐Ren Ye
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12091354

GDF6 Knockdown in a Family with Multiple Synostosis Syndrome and Speech Impairment
Cited by: 3
Author(s): Raymond A. Clarke, Zhiming Fang, Dédée Murrell, Tabrez Sheriff, Valsamma Eapen
Software Mentions: 1
Published: about 5 years ago

10.3390/genes11060629

Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice
Cited by: 5
Author(s): Yong Zhang, Limei Zhao, Hong Mei Xiao, Jinkiat Chew, Jinxia Xiang, Kaiyun Qian, Xing Fan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-020-02583-1

Comparative transcriptome analysis provides insight into regulation pathways and temporal and spatial expression characteristics of grapevine (Vitis vinifera) dormant buds in different nodes
Cited by: 9
Author(s): Lingfei Shangguan, Mengxia Chen, Xiang Fang, Zhihua Xie, Pan Gong, Yuxiang Huang, Zicheng Wang, Jinggui Fang
Software Mentions: 1
Published: about 6 years ago

10.3390/ani10112111

Identification and Characterization of Hypothalamic Alternative Splicing Events and Variants in Ovine Fecundity-Related Genes
Cited by: 2
Author(s): Zhuangbiao Zhang, Jiao Tang, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang, Wenping Hu
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes11030308

Transcriptomic Analysis of the Chicken MDA5 Response Genes
Cited by: 12
Author(s): Shiman Yu, Haiying Mao, Meilin Jin, Xian Lin
Software Mentions: 1
Published: over 6 years ago

10.3390/genes11020134

Robust Cytonuclear Coordination of Transcription in Nascent Arabidopsis thaliana Autopolyploids
Cited by: 16
Author(s): Jeremy E. Coate, W Max Schreyer, David Kum, Jeff J. Doyle
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.52069

Sequentially induced motor neurons from human fibroblasts facilitate locomotor recovery in a rodent spinal cord injury model
Cited by: 18
Author(s): Hyunah Lee, Hye Yeong Lee, Byeong Eun Lee, Daniela Gerovska, Soo Yong Park, Holm Zaehres, Marcos J. Araúzo-Bravo, Jae‐Ick Kim, Yoon Ha, Hans R. Schöler, Jeong Beom Kim
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-021-02218-x

Antisense yycG modulates the susceptibility of Staphylococcus aureus to hydrogen peroxide via the sarA
Cited by: 6
Author(s): Shizhou Wu, Yunjie Liu, Lei Lei, Hui Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/genes11020178

Transcriptomics Reveal Altered Metabolic and Signaling Pathways in Podocytes Exposed to C16 Ceramide-Enriched Lipoproteins
Cited by: 5
Author(s): Samar M. Hammad, Waleed O. Twal, Ehtesham Arif, Andrea J. Semler, Richard L. Klein, Deepak Nihalani
Software Mentions: 1
Published: over 6 years ago

10.1038/srep25828

The transcriptome of mouse central nervous system myelin
Cited by: 64
Author(s): Sudhir Thakurela, Angela Garding, Ramona B. Jung, Christina Müller, Sandra Goebbels, Robin White, Hauke Werner, Vijay Tiwari
Software Mentions: 1
Published: over 10 years ago

10.3390/genes11020167

Testing Differential Gene Networks under Nonparanormal Graphical Models with False Discovery Rate Control
Cited by: 3
Author(s): Qingyang Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10120958

Transcriptome Sequencing Reveals the Traits of Spermatogenesis and Testicular Development in Large Yellow Croaker (Larimichthys crocea)
Cited by: 15
Author(s): Shengyu Luo, Xinming Gao, Jie Ding, Cheng Liu, Chang Du, Cong-Cong Hou, Junquan Zhu, Bao Liu
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.62678

Cardiovascular disease risk factors induce mesenchymal features and senescence in mouse cardiac endothelial cells
Cited by: 11
Author(s): Karthik Amudhala Hemanthakumar, Shentong Fang, Andrey Anisimov, Mikko I. Mäyränpää, Eero Mervaala, Riikka Kivelä
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10080617

Global Investigation of Cytochrome P450 Genes in the Chicken Genome
Cited by: 6
Author(s): Jingyao Ren, Liyu Yang, Quan‐Lin Li, Qinghe Zhang, Chang Sun, Xiaojun Liu, Ning Yang
Software Mentions: 1
Published: about 7 years ago

10.3390/genes10080605

Transcriptome Analysis of Acid-Responsive Genes and Pathways Involved in Polyamine Regulation in Iron Walnut
Cited by: 4
Author(s): Xiaomei Luo, Juncheng Liu
Software Mentions: 1
Published: about 7 years ago

10.3390/genes10050340

Global Regulator PhoP is Necessary for Motility, Biofilm Formation, Exoenzyme Production, and Virulence of Xanthomonas citri Subsp. citri on Citrus Plants
Cited by: 10
Author(s): Wei Chu-dan, Tian Ding, Changqing Chang, Chengpeng Yu, Xing-wei Li, Qiongguang Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-019-1469-8

Burkholderia thailandensis strain E555 is a surrogate for the investigation of Burkholderia pseudomallei replication and survival in macrophages
Cited by: 17
Author(s): Andrea Kovacs-Simon, Claudia Hemsley, Andrew E. Scott, Joann L. Prior, Richard W. Titball
Software Mentions: 1
Published: over 7 years ago

10.1038/srep27463

Stimulation of superoxide production increases fungicidal action of miconazole against Candida albicans biofilms
Cited by: 26
Author(s): Kaat De Cremer, Klaas De Brucker, Ines Staes, Annelies Peeters, Freija Van den Driessche, Tom Coenye, Bruno P. A. Cammue, Karin Thevissen
Software Mentions: 1
Published: over 10 years ago

10.1186/s12866-020-1705-2

An operon consisting of a P-type ATPase gene and a transcriptional regulator gene responsible for cadmium resistances in Bacillus vietamensis 151–6 and Bacillus marisflavi 151–25
Cited by: 18
Author(s): Xiaoxia Yu, Zundan Ding, Yafei Ji, Jintong Zhao, Xiaoqing Liu, Jian Tian, Ningfeng Wu, Yanting Fan
Software Mentions: 1
Published: over 6 years ago

10.1038/srep29404

The genome and transcriptome of Trichormus sp. NMC-1: insights into adaptation to extreme environments on the Qinghai-Tibet Plateau
Cited by: 23
Author(s): Qin Qiao, Ying Huang, Ji-I. Qi, Mingzhi Qu, Chen Jiang, Peng-Cheng Lin, Renhui Li, Lirong Song, Takahiro Yonezawa, Masami Hasegawa, M. James C. Crabbe, Fan Chen, Ticao Zhang, Yang Zhong
Software Mentions: 1
Published: about 10 years ago

10.3390/genes9010029

The Landscape of Small Non-Coding RNAs in Triple-Negative Breast Cancer
Cited by: 19
Author(s): Yan Guo, Hui Yu, Jing Wang, Quanhu Sheng, Shilin Zhao, Zhao Yan, Brian D. Lehmann
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30576

Genome-wide transcriptomic analysis uncovers the molecular basis underlying early flowering and apetalous characteristic in Brassica napus L
Cited by: 12
Author(s): Kunjiang Yu, Xiaodong Wang, Feng Chen, Song Chen, Qi Peng, Hongge Li, Wei Zhang, Meijiao Hu, Pu Chu, Jiefu Zhang, Rongzhan Guan
Software Mentions: 1
Published: about 10 years ago

10.3390/genes8100275

Identification and Characterization of TALE Homeobox Genes in the Endangered Fern Vandenboschia speciosa
Cited by: 11
Author(s): Mercedes Ruíz-Estévez, Mohammed Bakkali, Rubén Martín-Blázquez, Manuel A. Garrido-Ramos
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes8080203

Transcriptome Analysis Reveals Long Intergenic Noncoding RNAs Contributed to Growth and Meat Quality Differences between Yorkshire and Wannanhua Pig
Cited by: 20
Author(s): Cheng Zou, Sha Li, Lulu Deng, Yang Guan, Dake Chen, Xiongkun Yuan, Tianrui Xia, Xinglin He, Yawei Shan, Changchun Li
Software Mentions: 1
Published: about 9 years ago

10.3390/genes7110097

Identification of Novel Equine (Equus caballus) Tendon Markers Using RNA Sequencing
Cited by: 7
Author(s): J. M. Kuemmerle, Felix Theiss, Michał Okoniewski, Fabienne A. Weber, Sonja Hemmi, Ali Mirsaidi, Peter J. Richards, Paolo Cinelli
Software Mentions: 1
Published: almost 10 years ago

10.1534/g3.119.400884

Genome-Wide Association Study for Maize Leaf Cuticular Conductance Identifies Candidate Genes Involved in the Regulation of Cuticle Development
Cited by: 10
Author(s): Lin Meng, Susanne Matschi, Miguel Vasquez, James Chamness, Nicholas Kaczmar, Matheus Baseggio, Michael G. Miller, Ethan L. Stewart, Pengfei Qiao, Michael J. Scanlon, Isabel Molina, Laurie G. Smith, Michael A. Gore
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22052564

Novel Transcriptome Study and Detection of Metabolic Variations in UV-B-Treated Date Palm (Phoenix dactylifera cv. Khalas)
Cited by: 9
Author(s): Mohamed Maher, Hasan Ahmad, Elsayed Nishawy, Yufei Li, Jie Luo
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-017-3824-1

Differences in responses of grass carp to different types of grass carp reovirus (GCRV) and the mechanism of hemorrhage revealed by transcriptome sequencing
Cited by: 52
Author(s): Libo He, Aidi Zhang, Yongyan Pei, Pengfei Chu, Yongming Li, Rong Huang, Lanjie Liao, Zhu Zhang, Yaping Wang
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.9816

Cellular androgen content influences enzalutamide agonism of F877L mutant androgen receptor
Cited by: 13
Author(s): Daniel J. Coleman, Kathryn Van Hook, Carly J. King, Jacob Schwartzman, Robert Lisac, Joshua A. Urrutia, Archana Sehrawat, Josha Woodward, Nicholas J. Wang, Roman Gulati, George V. Thomas, Tomasz M. Beer, Martin Gleave, James E. Korkola, Lina Gao, Laura M. Heiser, Joshi J. Alumkal
Software Mentions: 1
Published: over 10 years ago

10.1186/s12864-019-6417-3

The transcriptomic signature of low aggression in honey bees resembles a response to infection
Cited by: 9
Author(s): Clare C. Rittschof, Benjamin E. R. Rubin, Joseph H. Palmer
Software Mentions: 1
Published: almost 7 years ago

10.1038/srep38903

Differential transcription profiles of long non-coding RNAs in primary human brain microvascular endothelial cells in response to meningitic Escherichia coli
Cited by: 35
Author(s): Ruicheng Yang, Fei Huang, Jiyang Fu, Beibei Dou, Bin Xu, Miao Ling, Wentong Liu, Xiaopei Yang, Chen Tan, Huanchun Chen, Xiangru Wang
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.10452

Inhibition of RNA polymerase I transcription initiation by CX-5461 activates non-canonical ATM/ATR signaling
Cited by: 82
Author(s): Jaclyn Quin, Keefe T. Chan, Jennifer R. Devlin, Donald P. Cameron, Jeannine Diesch, Carleen Cullinane, Jessica Ahern, Amit Khot, Nadine Hein, Amee J. George, Katherine M. Hannan, Gretchen Poortinga, Karen E. Sheppard, Kum Kum Khanna, Ricky W. Johnstone, Denis Drygin, Grant A. McArthur, Richard B. Pearson, Elaine Sanij, Ross D. Hannan
Software Mentions: 1
Published: about 10 years ago

10.1186/s12920-021-01006-w

A blood RNA transcriptome signature for COVID-19
Cited by: 14
Author(s): Philip Kam Weng Kwan, Gail Brenda Cross, Claire M. Naftalin, Bintou Ahmadou Ahidjo, Chee Keng Mok, Felic Fanusi, Intan Permata Sari, Siok Ching Chia, Shoban Krishna Kumar, Rawan AlAgha, Sai Meng Tham, Sophia Archuleta, October M. Sessions, Martin L. Hibberd, Nicholas I. Paton
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.120.400990

Genetic Variation and Potential for Resistance Development to the tTA Overexpression Lethal System in Insects
Cited by: 16
Author(s): Katherine Elizabeth Knudsen, William Reid, Traci M Barbour, Laci M Bowes, Juliana Duncan, Elaina Philpott, Samantha Potter, Maxwell J. Scott
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22084147

Maternal Heat Stress Alters Expression of Genes Associated with Nutrient Transport Activity and Metabolism in Female Placentae from Mid-Gestating Pigs
Cited by: 10
Author(s): Weicheng Zhao, Fan Liu, C Marth, Mark P. Green, Hoang Viet Le, Brian J Leury, A. W. Bell, Frank R. Dunshea, Jeremy J. Cottrell
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.119.400818

Comparative Transcriptome Profiling Reveals Compatible and Incompatible Patterns of Potato Toward Phytophthora infestans
Cited by: 27
Author(s): Yanfeng Duan, Shaoguang Duan, Miles Armstrong, Jianfei Xu, Junli Zheng, Jun Hu, Xinwei Chen, Ingo Hein, Guangcun Li, Liping Jin
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400229

Comparative Transcriptome Analyses Revealed Conserved and Novel Responses to Cold and Freezing Stress in Brassica napus L
Cited by: 28
Author(s): Xin He, Xianchao Ni, Ping Xie, Wei Liu, Yang Gi Min, Yu Kang, Lunwen Qin, Hua Wei
Software Mentions: 1
Published: about 7 years ago

10.1038/srep41960

Expression of human endogenous retrovirus-K is strongly associated with the basal-like breast cancer phenotype
Cited by: 64
Author(s): Gary L. Johanning, Gabriel G. Malouf, Xiaofeng Zheng, Francisco J. Esteva, John N. Weinstein, Feng Wang-Johanning, Xiaoping Su
Software Mentions: 1
Published: over 9 years ago

10.3390/ani10091658

Transcriptional Regulator YqeI, Locating at ETT2 Locus, Affects the Pathogenicity of Avian Pathogenic Escherichia coli
Cited by: 9
Author(s): Mei Xue, Yong Xiao, Dandan Fu, Muhammad Akmal Raheem, Ying Shao, Xiangjun Song, Jing Tu, Ting Xue, Kezong Qi
Software Mentions: 1
Published: about 6 years ago

10.1038/srep43397

bHLH142 regulates various metabolic pathway-related genes to affect pollen development and anther dehiscence in rice
Cited by: 32
Author(s): Rajeev Ranjan, Ritika Khurana, Naveen Malik, Saurabh Badoni, Swarup K. Parida, Sanjay Kapoor, Akhilesh K. Tyagi
Software Mentions: 1
Published: over 9 years ago

10.1186/s12865-020-00356-x

Involvement of ABC-transporters and acyltransferase 1 in intracellular cholesterol-mediated autophagy in bovine alveolar macrophages in response to the Bacillus Calmette-Guerin (BCG) infection
Cited by: 7
Author(s): Jinrui Xu, Yongzhao Zhou, Yi Yang, Cuiping Lv, Xiaoming Liu, Yujiong Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/srep44867

Tricyclic Antidepressants Promote Ceramide Accumulation to Regulate Collagen Production in Human Hepatic Stellate Cells
Cited by: 21
Author(s): Jennifer Y. Chen, Benjamin Newcomb, Chan Zhou, Joshua V. Pondick, Sarani Ghoshal, Samuel R. York, Daniel L. Motola, Nicolas Coant, Jae Kyo Yi, Cungui Mao, Kenneth K. Tanabe, Irina Bronova, Evgeny Berdyshev, Bryan C. Fuchs, Yusuf A. Hannun, Raymond T. Chung, Alan C. Mullen
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms22105258

PSII Activity Was Inhibited at Flowering Stage with Developing Black Bracts of Oat
Cited by: 1
Author(s): Bei Liu, Di Zhang, Ming Sun, Manli Li, Xiqing Ma, Shangang Jia, Peisheng Mao
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms160511398

Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress
Cited by: 65
Author(s): Bin Bai, Jun Wu, Wentao Sheng, Bo Zhou, Lean Zhou, Wen Zhuang, Dongping Yao, Qipan Deng
Software Mentions: 1
Published: over 11 years ago

10.1534/g3.117.300257

Large-Scale Low-Cost NGS Library Preparation Using a Robust Tn5 Purification and Tagmentation Protocol
Cited by: 99
Author(s): Bianca P. Hennig, Lars Velten, Ines Racke, Chelsea Szu-Tu, Matthias Thoms, Vladimir Rybin, Hüseyin Besir, Kim Remans, Lars M. Steinmetz
Software Mentions: 1
Published: over 8 years ago

10.1038/srep45303

The E. coli molecular phenotype under different growth conditions
Cited by: 41
Author(s): Mehmet Umut Caglar, John R. Houser, Craig S. Barnhart, Daniel R. Boutz, Sean M. Carroll, Aurko Dasgupta, Walter F. Lenoir, Bartram L Smith, Viswanadham Sridhara, Dariya K. Sydykova, Drew Vander Wood, Christopher J. Marx, Edward M. Marcotte, Jeffrey E. Barrick, Claus O. Wilke
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-020-07004-z

A new mechanism for a familiar mutation – bovine DGAT1 K232A modulates gene expression through multi-junction exon splice enhancement
Cited by: 11
Author(s): Tania Fink, Thomas Lopdell, Kathryn Tiplady, Renee Handley, Thomas Johnson, Richard Spelman, Stephen R. Davis, Russell G. Snell, Mathew D Littlejohn
Software Mentions: 1
Published: about 6 years ago

10.3390/ani10030439

Correlation Analysis between AK1 mRNA Expression and Inosine Monophosphate Deposition in Jingyuan Chickens
Cited by: 8
Author(s): Juan Zhang, Honghong Hu, Tong Mu, Weizhen Wang, Baojun Yu, Ju Guo, Ying Wang, Zihang Zhou, Ye Gu, Zengwen Huang, Zhen Cai, Guosheng Xin
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-017-02643-x

Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice
Cited by: 32
Author(s): Xiaoxing Liang, Xujun Chen, Li Cheng, Jun Fan, Zejian Guo
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.117.042127

Identification of Nitrogen Consumption Genetic Variants in Yeast Through QTL Mapping and Bulk Segregant RNA-Seq Analyses
Cited by: 40
Author(s): Francisco A. Cubillos, Claire Brice, Jennifer Molinet, Sébastien Tisné, Valentina Abarca, Sebastián M. Tapia, Christian I. Oporto, Verónica García, Gianni Liti, Claudio Martı́nez
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-021-07580-8

An enhanced photosynthesis and carbohydrate metabolic capability contributes to heterosis of the cotton (Gossypium hirsutum) hybrid ‘Huaza Mian H318’, as revealed by genome-wide gene expression analysis
Cited by: 8
Author(s): Yuanhao Ding, Rui Zhang, Longfu Zhu, Maojun Wang, Yizan Ma, Daojun Yuan, Liu Nian, Haiyan Hu, Min Ling, Xianlong Zhang
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.116.035444

Microenvironmental Gene Expression Plasticity Among IndividualDrosophila melanogaster
Cited by: 30
Author(s): Yanzhu Lin, Zhenxia Chen, Brian Oliver, Susan T Harbison
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-020-06842-1

Genome-wide identification and characterization of multiple C2 domains and transmembrane region proteins in Gossypium hirsutum
Cited by: 6
Author(s): Pengbo Hao, Hantao Wang, Liang Ma, Aimin Wu, Pengyun Chen, Shuaishuai Cheng, Hengling Wei, Shuxun Yu
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms18092017

Comprehensive Evaluation of TFF3 Promoter Hypomethylation and Molecular Biomarker Potential for Prostate Cancer Diagnosis and Prognosis
Cited by: 13
Author(s): Maibritt Nørgaard, Christa Haldrup, Tine Maj Storebjerg, Else Marie Vestergaard, Peter J. Wild, Søren Høyer, Michael Borre, Torben F. Ørntoft, Karina D. Sørensen
Software Mentions: 1
Published: almost 9 years ago

10.1534/g3.116.027995

Characterization of a Single Genomic Locus Encoding the Clustered Protocadherin Receptor Diversity in Xenopus tropicalis
Cited by: 7
Author(s): Hakki Emre Etlioglu, Wei Sun, Zengjin Huang, Wei Chen, Dietmar Schmucker
Software Mentions: 1
Published: about 10 years ago

10.1534/g3.116.027870

Preparing for Winter: The Transcriptomic Response Associated with Different Day Lengths in Drosophila montana
Cited by: 36
Author(s): Darren J. Parker, Michael G. Ritchie, Maaria Kankare
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.115.023366

Diverse Hormone Response Networks in 41 IndependentDrosophilaCell Lines
Cited by: 37
Author(s): Marcus H. Stoiber, S Celniker, Lucy Cherbas, Ben Brown, Peter Cherbas
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.115.021220

Oviposition but Not Sex Allocation Is Associated with Transcriptomic Changes in Females of the Parasitoid Wasp Nasonia vitripennis
Cited by: 9
Author(s): Nicola Cook, Urmi Trivedi, Bart A. Pannebakker, Mark Blaxter, Michael G. Ritchie, Eran Tauber, Tanya Sneddon, David M. Shuker
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms22115422

Prolonged Transcriptional Consequences in Survivors of Sepsis
Cited by: 3
Author(s): Krzysztof Laudański, James Soh, Matthew DiMeglio, Kathleen E. Sullivan
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms19020488

Transcriptomics Sequencing Provides Insights into Understanding the Mechanism of Grass Carp Reovirus Infection
Cited by: 23
Author(s): Chen Geng, Libo He, Le Luo, Rong Huang, Lanjie Liao, Yongming Li, Zhu Zhang, Yaping Wang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-05313-0

Inhibition of β-Glucocerebrosidase Activity Preserves Motor Unit Integrity in a Mouse Model of Amyotrophic Lateral Sclerosis
Cited by: 36
Author(s): Alexandre Cruz Henriques, Mylene Huebecker, Hélène Blasco, Céline Keime, Christian R. Andres, Philippe Corcia, David A. Priestman, Frances M. Platt, Michael Spedding, Jean‐Philippe Loeffler
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms19051291

Common microRNA–mRNA Interactions in Different Newcastle Disease Virus-Infected Chicken Embryonic Visceral Tissues
Cited by: 22
Author(s): Yanqing Jia, Xinglong Wang, Xiangwei Wang, C X Yan, Changjie Lv, Xiaoqin Li, Zhili Chu, Fathalrhman Eisa Addoma Adam, Sa Xiao, Shuxia Zhang, Zhicong Yang
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-020-06852-z

Transcriptome analysis of genes related to gonad differentiation and development in Muscovy ducks
Cited by: 12
Author(s): Ding-Ping Bai, Yue Chen, Yuqiong Hu, Wenfeng He, Yu-Zhu Shi, Qin-Ming Fan, Ru-Tang Luo, Ang Li
Software Mentions: 1
Published: about 6 years ago

10.3389/fvets.2020.575865

Analysis of Transcriptomic Changes in Bovine Endometrial Stromal Cells Treated With Lipopolysaccharide
Cited by: 8
Author(s): Xuefen Ding, Haimiao Lv, Ling Deng, Wenju Hu, Peng Zhan, Chenbo Yan, Dexin Yang, Chao Tong, Xinzhuang Wang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fvets.2018.00198

Characterization of Spleen Transcriptome and Immunity Against Avian Colibacillosis After Immunization With Recombinant Attenuated Salmonella Vaccine Strains
Cited by: 9
Author(s): Zachary R. Stromberg, Angelica Van Goor, Graham A. J. Redweik, Melha Mellata
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-021-07453-0

Study on the transcriptome for breast muscle of chickens and the function of key gene RAC2 on fibroblasts proliferation
Cited by: 6
Author(s): Genxi Zhang, Pengfei Wu, Kaizhi Zhou, Ming‐Liang He, Xinchao Zhang, Cong Qiu, Tingting Li, Tao Zhang, Kaizhou Xie, Guojun Dai, Jinyu Wang
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-13-574

Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs
Cited by: 36
Author(s): Beata Werne Solnestam, Henrik Stranneheim, Jimmie Hällman, Max Käller, Emma Lundberg, Joakim Lundeberg, Pelin Akan
Software Mentions: 1
Published: almost 14 years ago

10.3389/fpls.2020.611871

Exploring the Role of a Cytokinin-Activating Enzyme LONELY GUY in Unicellular Microalga Chlorella variabilis
Cited by: 8
Author(s): Saraswati Nayar
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-07068-0

Evolution, expression and association of the chemosensory protein genes with the outbreak phase of the two main pest locusts
Cited by: 11
Author(s): Rubén Martín-Blázquez, Bing Chen, Le Kang, Mohammed Bakkali
Software Mentions: 1
Published: about 9 years ago

Projects: pypi: HTSeq

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Papers Mentioning HTSeq 3,071