pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.01319

Isolation of Low-Abundant Bacteroidales in the Human Intestine and the Analysis of Their Differential Utilization Based on Plant-Derived Polysaccharides
Cited by: 13
Author(s): Huizi Tan, Jianxin Zhao, Hao Zhang, Qixiao Zhai
Software Mentions: 1
Published: over 6 years ago

10.1128/mSystems.01256-20

Caught between Two Genes: Accounting for Operonic Gene Structure Improves Prokaryotic RNA Sequencing Quantification
Cited by: 1
Author(s): Taylor Reiter
Software Mentions: 1
Published: over 3 years ago

10.1155/2019/8465030

Protective Effect of Ginsenoside Rg1 on Oxidative Damage Induced by Hydrogen Peroxide in Chicken Splenic Lymphocytes
Cited by: 19
Author(s): Shicheng Bi, Xiuling Ma, Yuemin Wang, Xiaoqing Chi, Yong Zhang, Wei Xu, Songhua Hu
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00738-21

Identification of a GrgA-Euo-HrcA Transcriptional Regulatory Network in Chlamydia
Cited by: 6
Author(s): Wurihan Wurihan, Yi Zou, Alec M. Weber, Korri Weldon, Yehong Huang, Xiaofeng Bao, Chengsheng Zhu, Xiang Wu, Yaqun Wang, Zhao Lai, Huizhou Fan
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2021.682205

MgrB Inactivation Confers Trimethoprim Resistance in Escherichia coli
Cited by: 2
Author(s): Hongmei Shi, Ting Li, Jintian Xu, Jifang Yu, Shimei Yang, Xian-En Zhang, Sheng-Ce Tao, Jing Gu, Jiao-Yu Deng
Software Mentions: 1
Published: over 3 years ago

10.1098/rsob.180158

The histone deacetylase NlHDAC1 regulates both female and male fertility in the brown planthopper,<i>Nilaparvata lugens</i>
Cited by: 13
Author(s): Jinli Zhang, Xiaobo Yuan, Sun-Jie Chen, Haohao Chen, Nan Xu, Wenhua Xue, Sheng-Jie Fu, Chuan‐Xi Zhang, Haijun Xu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.00825

Tachyplesin Causes Membrane Instability That Kills Multidrug-Resistant Bacteria by Inhibiting the 3-Ketoacyl Carrier Protein Reductase FabG
Cited by: 23
Author(s): Cunbao Liu, Jialong Qi, Bin Shu, Yanbing Ma
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.672661

pH Changes Have a Profound Effect on Gene Expression, Hydrolytic Enzyme Production, and Dimorphism in Saccharomycopsis fibuligera
Cited by: 1
Author(s): Mohamed El-Agamy Farh, Najib Abdellaoui, Jeong‐Ah Seo
Software Mentions: 1
Published: over 3 years ago

10.15252/emmm.202012632

SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function
Cited by: 21
Author(s): Moo-Ho Bae, Junyeop Daniel Roh, You Joung Kim, Seong Soon Kim, Hye Min Han, Esther Yang, Hyojin Kang, Suho Lee, Jin Yong Kim, Ryeonghwa Kang, Hwajin Jung, Taesun Yoo, Hyosang Kim, Doyoun Kim, Heejeong Oh, Sungwook Han, Dayeon Kim, Jinju Han, Yong Chul Bae, Hyun Kim, Sunjoo Ahn, Andrew M. Chan, Daeyoup Lee, Jin Woo Kim, Eunjoon Kim
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.ebiom.2017.10.024

Restricted Presence of POU6F2 in Human Corneal Endothelial Cells Uncovered by Extension of the Promoter-level Expression Atlas
Cited by: 7
Author(s): Masahito Yoshihara, Shotaro Hara, Motokazu Tsujikawa, Satoshi Kawasaki, Yoshihide Hayashizaki, Masayoshi Itoh, Hideya Kawaji, Kohji Nishida
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pntd.0006309

Three-dimensional hepatocyte culture system for the study of Echinococcus multilocularis larval development
Cited by: 8
Author(s): Li Li, Bing Chen, Hong‐Bin Yan, Yannan Zhao, Zhongzi Lou, Jianqiu Li, Bao‐Quan Fu, Xing‐Quan Zhu, Donald P. McManus, Jianwu Dai, Wan‐Zhong Jia
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1005087

Transcriptomic Profiling of Yersinia pseudotuberculosis Reveals Reprogramming of the Crp Regulon by Temperature and Uncovers Crp as a Master Regulator of Small RNAs
Cited by: 66
Author(s): Aaron M. Nuss, Ann Kathrin Heroven, B Waldmann, Jan Reinkensmeier, Michael Jarek, Michael Beckstette, Petra Dersch
Software Mentions: 1
Published: over 9 years ago

10.1093/database/bay075

RabGTD: a comprehensive database of rabbit genome and transcriptome
Cited by: 12
Author(s): Lu Zhou, Qingyu Xiao, Jie Bi, Zhen Wang, Yixue Li
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.dib.2018.08.188

Transcriptomic data on the role of PEST-domain-enriched tyrosine phosphatase in the regulation of antigen-mediated activation and antiallergic action of glucocorticoids in mast cells
Cited by: 1
Author(s): George K. Ainooson, Victor Gourain, Michael Stassen, Andrew C. B. Cato
Software Mentions: 1
Published: about 6 years ago

10.1016/j.dib.2020.106563

MicroRNA expression data of pluripotent and somatic cells and identification of cell type-specific MicroRNAs in pigs
Cited by: 0
Author(s): Jong‐Nam Oh, Dong Hoon Son, Kwang‐Hwan Choi, Jae Yeon Hwang, Dong‐Kyung Lee, Seung‐Hun Kim, Mingyun Lee, Jinsol Jeong, Gyung Cheol Choe, Chang Kyu Lee
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13046-018-0687-5

RHBDD1 promotes colorectal cancer metastasis through the Wnt signaling pathway and its downstream target ZEB1
Cited by: 57
Author(s): Mengmeng Zhang, Fei Miao, R. Stephanie Huang, Wenjie Liu, Yuechao Zhao, Tao Jiao, Yalan Lu, Fan Wu, Xiaojuan Wang, Han Wang, Hong Zhao, Hongge Ju, Shiying Miao, Linfang Wang, Wei Song
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.dib.2017.01.001

Dataset for distribution of SIDER2 elements in the Leishmania major genome and transcriptome
Cited by: 0
Author(s): José Marı́a Requena, Alberto Rastrojo, Esther Garde, Manuel Carlos López, M. Carmen Thomas, Begoña Aguado
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0008516

What happens after a blood meal? A transcriptome analysis of the main tissues involved in egg production in Rhodnius prolixus, an insect vector of Chagas disease
Cited by: 21
Author(s): Jimena Leyria, Ian Orchard, Angela B. Lange
Software Mentions: 1
Published: about 4 years ago

10.1016/j.dib.2020.105432

RNA-seq data from whole rice grains of pigmented and non-pigmented Malaysian rice varieties
Cited by: 5
Author(s): Rabiatul-Adawiah Zainal-Abidin, Zamri Zainal, Zeti‐Azura Mohamed‐Hussein, Norliza Abu Bakar, Shahril Ab Razak, Sanimah Simoh, Yun Shin Sew
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-019-0727-5

The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus
Cited by: 22
Author(s): Jolene M. Garber, Harald Nothaft, Ben Pluvinage, Martin Ståhl, Xiaoming Bian, Sara Porfírio, A Enríquez, James Butcher, Hua Huang, John Glushka, Eric Line, J.A. Gerlt, Parastoo Azadi, Alain Stintzi, A.B. Boraston, Christine M. Szymanski
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13046-019-1121-3

A subset of diffuse-type gastric cancer is susceptible to mTOR inhibitors and checkpoint inhibitors
Cited by: 21
Author(s): Hiroshi Fukamachi, Seon‐Kyu Kim, Jiwon Koh, Hye Seung Lee, Yasushi Sasaki, Kentaro Yamashita, Taketo Nishikawaji, Shu Shimada, Yoshimitsu Akiyama, Sun-Ju Byeon, Dong Hyuck Bae, Keisuke Okuno, Masatoshi Nakagawa, Toshiro Tanioka, Mikito Inokuchi, Hiroshi Kawachi, Kiichiro Tsuchiya, Kazuyuki Kojima, Takashi Tokino, Yoshinobu Eishi, Yong‐Sung Kim, Woo Ho Kim, Yasuhito Yuasa, Shinji Tanaka
Software Mentions: 1
Published: over 5 years ago

10.1186/s13046-020-01767-9

The miR-1185-2-3p—GOLPH3L pathway promotes glucose metabolism in breast cancer by stabilizing p53-induced SERPINE1
Cited by: 15
Author(s): Youqin Xu, Wancheng Chen, Jing Liang, Xiaoqi Zeng, Kaiyuan Ji, Jianlong Zhou, Shijun Liao, Jiexian Wu, Kongyang Xing, Zhiwei He, Yang Yang, Qianzhen Liu, Paikun Zhu, Yuchang Liu, Li Li, Minfeng Liu, Wenxiao Chen, Wenhua Huang
Software Mentions: 1
Published: almost 4 years ago

10.3390/nu12092821

Folic Acid Induces Intake-Related Changes in the Mammary Tissue Transcriptome of C57BL/6 Mice
Cited by: 2
Author(s): Mark Burton, Elie Antoun, Reyna Peñailillo, Graham C. Burdge, Karen A. Lillycrop
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-020-01295-4

Identification and characterization of a new isoform of small GTPase RhoE
Cited by: 1
Author(s): Yiwu Dai, Weijia Luo, Xiaojing Yue, Wencai Ma, Jing Wang, Jiang Chang
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-021-02458-7

Impact and mechanism of sulphur-deficiency on modern wheat farming nitrogen-related sustainability and gliadin content
Cited by: 23
Author(s): Zitong Yu, Maoyun She, Ting Zheng, Dean Diepeveen, Shahidul Islam, Yun Zhao, Yingquan Zhang, Guixiang Tang, Yujuan Zhang, Jingjuan Zhang, Christopher L. Blanchard, Wenqi Ma
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-020-0853-0

Circulating re-entrant waves promote maturation of hiPSC-derived cardiomyocytes in self-organized tissue ring
Cited by: 29
Author(s): Junjun Li, Lu Zhang, Lei Yu, Itsunari Minami, Shigeru Miyagawa, Marcel Hörning, Ji Dong, Jing Qiao, Xiaodong Qu, Ying Hua, Nozomu Fujimoto, Yuji Shiba, Yang Zhao, Fuchou Tang, Chen Yong, Yoshiki Sawa, Chao Tang, Li Liu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-33838-5

Neurogenin3 phosphorylation controls reprogramming efficiency of pancreatic ductal organoids into endocrine cells
Cited by: 16
Author(s): Roberta Azzarelli, Steffen Rulands, Sonia Nestorowa, John Dwyfor Davies, Sara Campinoti, Sébastien Gillotin, Paola Bonfanti, Berthold Göttgens, Meritxell Huch, Benjamin D. Simons, Anna Philpott
Software Mentions: 1
Published: about 6 years ago

10.1002/ctm2.265

Reiterative infusions of MSCs improve pediatric osteogenesis imperfecta eliciting a pro‐osteogenic paracrine response: TERCELOI clinical trial
Cited by: 21
Author(s): Arantza Infante, Blanca Gener, Miguél Vázquez, Nerea Olivares, Ana Arrieta, Gema Grau, Isabel Llano, Luís Madero, Ana M. Bueno, Belén Sagastizábal, Daniela Gerovska, Marcos J. Araúzo‐Bravo, Itziar Astigarraga, Clara I. Rodrı́guez
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-30821-y

Molecular and physiological responses in roots of two full-sib poplars uncover mechanisms that contribute to differences in partial submergence tolerance
Cited by: 14
Author(s): Yanjie Peng, Zhixiang Zhou, Zhe Zhang, Xiaoli Yu, XinYe Zhang, Kun Du
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-30972-y

Mutations causing low level antibiotic resistance ensure bacterial survival in antibiotic-treated hosts
Cited by: 55
Author(s): Jakob Frimodt-Møller, Elio Rossi, Janus Anders Juul Haagensen, Falcone Marilena, Søren Molin, Helle Krogh Johansen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-36771-9

Live imaging of leukocyte recruitment in a zebrafish model of chemical liver injury
Cited by: 15
Author(s): Michelina D. Stoddard, Cong Huang, Balázs Enyedi, Philipp Niethammer
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-28485-9

Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome
Cited by: 88
Author(s): Helena Sork, Giulia Corso, Kaarel Krjutškov, Henrik J. Johansson, Joel Z. Nordin, Oscar P. B. Wiklander, Yi Xin Fiona Lee, Jakub Orzechowski Westholm, Janne Lehtiö, Matthew Wood, Imre Mäger, Samir El Andaloussi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-28239-7

ETV1 activates a rapid conduction transcriptional program in rodent and human cardiomyocytes
Cited by: 23
Author(s): Akshay Shekhar, Xianming Lin, Bin Lin, Fang-Yu Liu, Jie Zhang, Alireza Khodadadi‐Jamayran, Aristotelis Tsirigos, Lei Bu, Glenn I. Fishman, David Park
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-27565-0

RNA-Seq reveals large quantitative differences between the transcriptomes of outbreak and non-outbreak locusts
Cited by: 9
Author(s): Mohammed Bakkali, Rubén Martín-Blázquez
Software Mentions: 1
Published: over 6 years ago

10.1002/ctm2.269

CD73 alleviates GSDMD‐mediated microglia pyroptosis in spinal cord injury through PI3K/AKT/Foxo1 signaling
Cited by: 90
Author(s): Shun Xu, Jin Wang, Junjie Zhong, Minghao Shao, Jianyuan Jiang, Jian Song, Wei Zhu, Fan Zhang, Haocheng Xu, Guangyu Xu, Yuxuan Zhang, Xiaosheng Ma, Feizhou Lyu
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-25483-9

Identification of target genes regulated by the Drosophila histone methyltransferase Eggless reveals a role of Decapentaplegic in apoptotic signaling
Cited by: 6
Author(s): Igojo Kang, Yourim Choi, Sueun Jung, Jae Yun Lim, Dong Hoon Lee, Sumeet Gupta, Woongjoon Moon, Chanseok Shin
Software Mentions: 1
Published: over 6 years ago

10.1002/cti2.1165

Novel combination immunotherapy for pancreatic cancer: potent anti‐tumor effects with CD40 agonist and interleukin‐15 treatment
Cited by: 24
Author(s): Jonas R.M. Van Audenaerde, Elly Marcq, Bianca von Scheidt, Ashleigh S Davey, Amanda J. Oliver, Jorrit De Waele, Delphine Quatannens, Jinthe Van Loenhout, Patrick Pauwels, Geert Roeyen, Filip Lardon, Clare Y. Slaney, Marc Peeters, Michael H. Kershaw, Phillip K. Darcy, Elke Smits
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-38488-9

Fine-mapping sequence mutations with a major effect on oligosaccharide content in bovine milk
Cited by: 12
Author(s): Zhiqian Liu, Tingting Wang, J.E. Pryce, Iona M. MacLeod, Ben J. Hayes, Amanda J. Chamberlain, Christy Vander Jagt, Coralie M. Reich, Brett Mason, Simone Rochfort, Benjamin G. Cocks
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-39119-z

Sodium-activated potassium channels shape peripheral auditory function and activity of the primary auditory neurons in mice
Cited by: 29
Author(s): Daniël O. J. Reijntjes, Jeong Han Lee, Seojin Park, Nick Schubert, Marcel van Tuinen, Sarath Vijayakumar, Timothy A. Jones, Sherri M. Jones, Michael Anne Gratton, Xiaoming Xia, Ebenezer N. Yamoah, Sonja J. Pyott
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-23116-9

Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea
Cited by: 54
Author(s): Mayank Kaashyap, Rebecca Ford, Himabindu Kudapa, Mukesh Jain, David Edwards, Rajeev K. Varshney, Nitin Mantri
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-39125-1

Death of female flower microsporocytes progresses independently of meiosis-like process and can be accelerated by specific transcripts in Asparagus officinalis
Cited by: 5
Author(s): Mayui Ide, Kiyoshi Masuda, Daisuke Tsugama, Kazuo Fujino
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-018-20373-6

Identification of molecular pathways and candidate genes associated with cocks’ comb size trait by genome-wide transcriptome analysis
Cited by: 6
Author(s): Yifan Liu, Yan Tu, Ming Zhang, Gaige Ji, Kun Wang, Yanju Shan, Xiaojun Ju, Di Zhang, Shu JingTing, Jianmin Zou
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13148-019-0742-x

Epigenetic silencing of MEIS2 in prostate cancer recurrence
Cited by: 10
Author(s): Maibritt Nørgaard, Christa Haldrup, Marianne Bjerre, Søren Høyer, Benedicte Parm Ulhøi, Michael Borre, Karina D. Sørensen
Software Mentions: 1
Published: about 5 years ago

10.3390/cells10071809

Morpho-Physiological and Transcriptome Changes in Tomato Anthers of Different Developmental Stages under Drought Stress
Cited by: 11
Author(s): Anthony Tumbeh Lamin-Samu, Mohamed Farghal, Muhammad Ali, Gang Lü
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-019-40501-0

RNA-seq of Isolated Chromaffin Cells Highlights the Role of Sex-Linked and Imprinted Genes in Adrenal Medulla Development
Cited by: 11
Author(s): Wing Man Chan, Masayuki Komada, Toshiaki Fukushima, E. Michelle Southard‐Smith, Colin Anderson, Matthew J. Wakefield
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-10475-y

Comparative transcriptome analysis of the Pacific White Shrimp (Litopenaeus vannamei) muscle reveals the molecular basis of residual feed intake
Cited by: 17
Author(s): Peng Dai, Sheng Luan, Xia Lu, Kun Luo, Jie Kong
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-41236-8

Complex regulatory network allows Myriophyllum aquaticum to thrive under high-concentration ammonia toxicity
Cited by: 7
Author(s): Rui Wang, Shengjun Xu, Hanjun Sun, Shugeng Feng, Cancan Jiang, Sining Zhou, Shimin Wu, Guoqiang Zhuang, Baodong Chen, Bai Zhang, Zhihui Bai
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-40747-8

miRNA profiling of urinary exosomes to assess the progression of acute kidney injury
Cited by: 57
Author(s): Hiroko Sonoda, Byung Rho Lee, Ki Hoon Park, Deepak Nihalani, Je‐Hyun Yoon, Masahiro Ikeda, Sang Ho Kwon
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-08515-8

Cellular toxicity pathways of inorganic and methyl mercury in the green microalga Chlamydomonas reinhardtii
Cited by: 52
Author(s): Rébecca Beauvais-Flück, Vera I. Slaveykova, Claudia Cosio
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41616-0

Genome-wide Analysis Reveals DNA Methylation Alterations in Obesity Associated with High Risk of Colorectal Cancer
Cited by: 15
Author(s): Longlong Dong, Li Ma, Helena Glória, Hongmei Ren
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41692-2

An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome
Cited by: 24
Author(s): Paula Josefina Gómez-González, Núria Andreu, Jody Phelan, Paola Flórez de Sessions, Judith R. Glynn, Amelia C. Crampin, Susana Campino, Philip D. Butcher, Martin L. Hibberd, Taane G. Clark
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41132-1

Transcriptomic Diversification of Granulosa Cells during Follicular Development in Chicken
Cited by: 24
Author(s): Guoqiang Zhu, Chao Fang, Jing Li, Chunheng Mo, Yajun Wang, Juan Li
Software Mentions: 1
Published: over 5 years ago

10.1016/j.gpb.2018.12.012

Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica
Cited by: 6
Author(s): Changliang Shan, Guoliang Wang, Tao Liu, Xumin Wang, Cui Liu, Yishuai Jin, Hongxin Yin, Xin Xu, Jun Yu
Software Mentions: 1
Published: over 4 years ago

10.1186/s13059-018-1418-0

Full-length mRNA sequencing uncovers a widespread coupling between transcription initiation and mRNA processing
Cited by: 86
Author(s): Seyed Yahya Anvar, G. Allard, Elizabeth Tseng, Gloria Sheynkman, Eleonora de Klerk, Martijn Vermaat, Raymund H. Yin, Hans Johansson, Yavuz Ariyürek, Johan T. den Dunnen, Stephen W. Turner, Peter A.C. ’t Hoen
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-014-0523-y

An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era
Cited by: 129
Author(s): Zhenqiang Su, Hong Fang, Huixiao Hong, Leming Shi, Wenqian Zhang, Wenwei Zhang, Yanyan Zhang, Zirui Dong, Lee Lancashire, Marina Bessarabova, Xi Yang, Baitang Ning, Binsheng Gong, Joe Meehan, Joshua Xu, Weigong Ge, Roger Perkins, Matthias Fischer, Weida Tong
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12711-014-0074-4

Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions
Cited by: 106
Author(s): Kathryn E. Kemper, Coralie M. Reich, P.J. Bowman, Christy J. Vander Jagt, Amanda J. Chamberlain, Brett Mason, Ben J. Hayes, Michael E. Goddard
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1006088

Msa1 and Msa2 Modulate G1-Specific Transcription to Promote G1 Arrest and the Transition to Quiescence in Budding Yeast
Cited by: 21
Author(s): Shawna Miles, Matthew W. Croxford, Amali P. Abeysinghe, Linda Breeden
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-019-43413-1

Thallium(I) treatment induces nucleolar stress to stop protein synthesis and cell growth
Cited by: 18
Author(s): Yu‐Min Chou, Kai-Yin Lo
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12091354

GDF6 Knockdown in a Family with Multiple Synostosis Syndrome and Speech Impairment
Cited by: 3
Author(s): Raymond A. Clarke, Zhiming Fang, Dédée Murrell, Tabrez Sheriff, Valsamma Eapen
Software Mentions: 1
Published: about 3 years ago

10.3390/jof6040363

Cellular and Molecular Response of Macrophages THP-1 during Co-Culture with Inactive Trichophyton rubrum Conidia
Cited by: 9
Author(s): Gabriela Gonzalez Segura, Bruna Aline Michelotto Cantelli, Kamila Chagas Peronni, Pablo Rodrigo Sanches, Tatiana Takahasi Komoto, Élen Rizzi, René Oliveira Beleboni, Wilson A. Silva, Nilce M. Martinez-Rossi, Mozart Marins, Ana Lúcia Fachin
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes11060629

Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice
Cited by: 5
Author(s): Yong Zhang, Limei Zhao, Hong Mei Xiao, Jinkiat Chew, Jinxia Xiang, Kaiyun Qian, Xing Fan
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-019-44339-4

PCA-PAM50 improves consistency between breast cancer intrinsic and clinical subtyping reclassifying a subset of luminal A tumors as luminal B
Cited by: 32
Author(s): Praveen Kumar, Jianfang Liu, Jeffrey A. Hooke, Albert J. Kovatich, Leonid Kvecher, Craig D. Shriver, Hai Hu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1007750

Synaptogyrin-2 influences replication of Porcine circovirus 2
Cited by: 21
Author(s): Lianna R. Walker, Taylor Engle, Hiep L.X. Vu, Emily R. Tosky, Dan Nonneman, Timothy P. L. Smith, Tudor Borza, Thomas E. Burkey, Graham Plastow, Stephen D. Kachman, Daniel C. Ciobanu
Software Mentions: 1
Published: about 6 years ago

10.3390/genes11030308

Transcriptomic Analysis of the Chicken MDA5 Response Genes
Cited by: 12
Author(s): Shiman Yu, Haiying Mao, Meilin Jin, Xian Lin
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11020134

Robust Cytonuclear Coordination of Transcription in Nascent Arabidopsis thaliana Autopolyploids
Cited by: 16
Author(s): Jeremy E. Coate, W Max Schreyer, David Kum, Jeff J. Doyle
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes11020178

Transcriptomics Reveal Altered Metabolic and Signaling Pathways in Podocytes Exposed to C16 Ceramide-Enriched Lipoproteins
Cited by: 5
Author(s): Samar M. Hammad, Waleed O. Twal, Ehtesham Arif, Andrea J. Semler, Richard L. Klein, Deepak Nihalani
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes11020167

Testing Differential Gene Networks under Nonparanormal Graphical Models with False Discovery Rate Control
Cited by: 3
Author(s): Qingyang Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes10120958

Transcriptome Sequencing Reveals the Traits of Spermatogenesis and Testicular Development in Large Yellow Croaker (Larimichthys crocea)
Cited by: 15
Author(s): Shengyu Luo, Xinming Gao, Jie Ding, Cheng Liu, Chang Du, Cong-Cong Hou, Junquan Zhu, Bao Liu
Software Mentions: 1
Published: about 5 years ago

10.3390/genes10080617

Global Investigation of Cytochrome P450 Genes in the Chicken Genome
Cited by: 6
Author(s): Jingyao Ren, Liyu Yang, Quan‐Lin Li, Qinghe Zhang, Chang Sun, Xiaojun Liu, Ning Yang
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10080605

Transcriptome Analysis of Acid-Responsive Genes and Pathways Involved in Polyamine Regulation in Iron Walnut
Cited by: 4
Author(s): Xiaomei Luo, Juncheng Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-99307-8

Distinct roles of haspin in stem cell division and male gametogenesis
Cited by: 12
Author(s): Katerina Soupsana, Eleftheria Karanika, Fani Kiosse, Anastasia Christogianni, Yiorgos Sfikas, Pantelis Topalis, Anna Batistatou, Zoi Kanaki, Apostolos Klinakis, Anastasia S. Politou, Spyros D. Georgatos
Software Mentions: 1
Published: about 3 years ago

10.3390/genes10050340

Global Regulator PhoP is Necessary for Motility, Biofilm Formation, Exoenzyme Production, and Virulence of Xanthomonas citri Subsp. citri on Citrus Plants
Cited by: 10
Author(s): Wei Chu-dan, Tian Ding, Changqing Chang, Chengpeng Yu, Xing-wei Li, Qiongguang Liu
Software Mentions: 1
Published: over 5 years ago

10.3390/jof7080613

Understanding the Role of Trichoderma reesei Vib1 in Gene Expression during Cellulose Degradation
Cited by: 4
Author(s): Xiuzhen Chen, Bingran Song, Minglu Liu, Lu‐Ping Qin, Zhiyang Dong
Software Mentions: 1
Published: over 3 years ago

10.3390/cells8121623

Vascular PPARβ/δ Promotes Tumor Angiogenesis and Progression
Cited by: 24
Author(s): Kay-Dietrich Wagner, Siyue Du, Luc Martin, Nathalie Leccia, Jean‐François Michiels, Nicole Wagner
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes9010029

The Landscape of Small Non-Coding RNAs in Triple-Negative Breast Cancer
Cited by: 19
Author(s): Yan Guo, Hui Yu, Jing Wang, Quanhu Sheng, Shilin Zhao, Zhao Yan, Brian D. Lehmann
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.00714-19

Comparative Analysis of Gene Expression in Virulent and Attenuated Strains of Infectious Bronchitis Virus at Subcodon Resolution
Cited by: 28
Author(s): Adam M. Dinan, Sarah Keep, Erica Bickerton, Paul Britton, Andrew E. Firth, Ian Brierley
Software Mentions: 1
Published: about 5 years ago

10.3390/genes8100275

Identification and Characterization of TALE Homeobox Genes in the Endangered Fern Vandenboschia speciosa
Cited by: 11
Author(s): Mercedes Ruíz-Estévez, Mohammed Bakkali, Rubén Martín-Blázquez, Manuel A. Garrido-Ramos
Software Mentions: 1
Published: about 7 years ago

10.1155/2016/9837310

RNA Sequencing of Formalin-Fixed, Paraffin-Embedded Specimens for Gene Expression Quantification and Data Mining
Cited by: 15
Author(s): Yan Guo, Jie Wu, Shilin Zhao, Fei Ye, Yinghao Su, Travis A. Clark, Quanhu Sheng, Brian D. Lehmann, Xiao‐Ou Shu, Qiuyin Cai
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes8080203

Transcriptome Analysis Reveals Long Intergenic Noncoding RNAs Contributed to Growth and Meat Quality Differences between Yorkshire and Wannanhua Pig
Cited by: 20
Author(s): Cheng Zou, Sha Li, Lulu Deng, Yang Guan, Dake Chen, Xiongkun Yuan, Tianrui Xia, Xinglin He, Yawei Shan, Changchun Li
Software Mentions: 1
Published: over 7 years ago

10.3390/genes7110097

Identification of Novel Equine (Equus caballus) Tendon Markers Using RNA Sequencing
Cited by: 7
Author(s): J. M. Kuemmerle, Felix Theiss, Michał Okoniewski, Fabienne A. Weber, Sonja Hemmi, Ali Mirsaidi, Peter J. Richards, Paolo Cinelli
Software Mentions: 1
Published: about 8 years ago

10.3390/cells9061399

RNA-Sequencing-Based Transcriptomic Analysis Reveals a Role for Annexin-A1 in Classical and Influenza A Virus-Induced Autophagy
Cited by: 6
Author(s): Jianzhou Cui, Dhakshayini Morgan, Dao Han Cheng, Sok Lin Foo, Gracemary Yap, Patrick B. Ampomah, Satyam Arora, Karishma Sachaphibulkij, Balamurugan Periaswamy, Anna‐Marie Fairhurst, Paola Flórez de Sessions, Lina H.K. Lim
Software Mentions: 1
Published: over 4 years ago

10.1155/2017/7421761

Effect of Gegen Qinlian Decoction on Cardiac Gene Expression in Diabetic Mice
Cited by: 9
Author(s): Jing Han, Zhenglin Wang, Xiaohua Wei, Yueying Yuan, Yi Zeng, Taotao Lv, Hongliang Wang, Yonggang Liu, Yan Wu
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1007379

Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging
Cited by: 32
Author(s): Antti Aalto, Ian Nicastro, James P. Broughton, Laura B. Chipman, William P. Schreiner, Jerry S. Chen, Amy E. Pasquinelli
Software Mentions: 1
Published: over 6 years ago

10.1186/s13287-020-01814-4

METTL1-mediated m7G methylation maintains pluripotency in human stem cells and limits mesoderm differentiation and vascular development
Cited by: 36
Author(s): Yujie Deng, Zhenhua Zhou, Weidong Ji, Shuibin Lin, Min Wang
Software Mentions: 1
Published: over 4 years ago

10.1186/s13287-020-01984-1

Melphalan induces cardiotoxicity through oxidative stress in cardiomyocytes derived from human induced pluripotent stem cells
Cited by: 12
Author(s): Rui Li, Dong Liu, Fangxu Sun, Antonio Rampoldi, Joshua T. Maxwell, Ronghu Wu, Peter Fischbach, Sharon M. Castellino, Yuhong Du, Haian Fu, Anant Mandawat, Chunhui Xu
Software Mentions: 1
Published: about 4 years ago

10.1186/s13229-015-0008-1

Fmrp targets or not: long, highly brain-expressed genes tend to be implicated in autism and brain disorders
Cited by: 30
Author(s): Rebecca Ouwenga, Joseph D. Dougherty
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0214497

Comprehensive RNA-Seq profiling of the lung transcriptome of Bashbay sheep in response to experimental Mycoplasma ovipneumoniae infection
Cited by: 9
Author(s): Zhenhua Du, Yanming Sun, Jixue Wang, Haiyan Liu, Yi Yang, Ning Zhao
Software Mentions: 1
Published: over 4 years ago

10.1186/1756-8935-8-9

Altering cancer transcriptomes using epigenomic inhibitors
Cited by: 28
Author(s): Malaina Gaddis, Diana L. Gerrard, Seth Frietze, Peggy J. Farnham
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0153970

Combined Gene Expression and RNAi Screening to Identify Alkylation Damage Survival Pathways from Fly to Human
Cited by: 8
Author(s): Alfeu Zanotto-Filho, Dashnamoorthy Ravi, Eva Loranc, Luís Henrique Trentin de Souza, José Cláudio Fonseca Moreira, Uthra Suresh, Yidong Chen, Alexander J.R. Bishop
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-02643-x

Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice
Cited by: 32
Author(s): Xiaoxing Liang, Xujun Chen, Li Cheng, Jun Fan, Zejian Guo
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-020-07509-6

YB-1 transferred by gastric cancer exosomes promotes angiogenesis via enhancing the expression of angiogenic factors in vascular endothelial cells
Cited by: 24
Author(s): Xiaoxia Xue, Jin Huang, Kai Yu, Xinyue Chen, Yan-Ling He, Dianjun Qi, Ying Wu
Software Mentions: 1
Published: about 4 years ago

10.1186/s13099-018-0236-y

Chlortetracycline and florfenicol induce expression of genes associated with pathogenicity in multidrug-resistant Salmonella enterica serovar Typhimurium
Cited by: 8
Author(s): Devin B. Holman, Shawn M. D. Bearson, Bradley L. Bearson, Brian W. Brunelle
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-021-08200-0

Transcriptome analysis of potential candidate genes and molecular pathways in colitis-associated colorectal cancer of Mkp-1-deficient mice
Cited by: 4
Author(s): Ahmed Hammad, Zhaohong Zheng, Akhileshwar Namani, Mohamed Elshaer, Xiu Jun Wang, Xiuwen Tang
Software Mentions: 1
Published: over 3 years ago

10.1186/s12866-020-1705-2

An operon consisting of a P-type ATPase gene and a transcriptional regulator gene responsible for cadmium resistances in Bacillus vietamensis 151–6 and Bacillus marisflavi 151–25
Cited by: 18
Author(s): Xiaoxia Yu, Zundan Ding, Yafei Ji, Jintong Zhao, Xiaoqing Liu, Jian Tian, Ningfeng Wu, Yanting Fan
Software Mentions: 1
Published: almost 5 years ago

10.1155/2018/9194362

The Effects of Radix Astragali Water Abstract on Energy Metabolism in Rat Yang-Deficiency Cold Syndrome Model through PPAR Signaling Pathway
Cited by: 9
Author(s): Wanchen Yu, Haijun Zhao, Xin Zong, Xuming Ji, Xiao Han, Yanfang Wang, Yanan Zhang, Ke Ma, Ning Cui, Shijun Wang
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20184491

Identification of Long Non-Coding RNAs and the Regulatory Network Responsive to Arbuscular Mycorrhizal Fungi Colonization in Maize Roots
Cited by: 18
Author(s): Guomin Han, Chen Cheng, Yanmei Zheng, Xuewen Wang, Yang Xu, Wei Wang, Suwen Zhu, Beijiu Cheng
Software Mentions: 1
Published: about 5 years ago

10.3390/plants9030327

Genome-Wide Identification and Expression Analysis of Polygalacturonase Gene Family in Kiwifruit (Actinidia chinensis) during Fruit Softening
Cited by: 19
Author(s): Wenjun Huang, Meiyan Chen, Tingting Zhao, Han Fu-gen, Qi Zhang, Xiaoli Liu, Changying Jiang, Caihong Zhong
Software Mentions: 1
Published: over 4 years ago

10.1186/s13227-018-0111-4

A two-level model for the role of complex and young genes in the formation of organism complexity and new insights into the relationship between evolution and development
Cited by: 10
Author(s): Dong Yang, Aotian Xu, Pan Shen, Chao Gao, Jiayin Zang, Chen Qiu, Hongsheng Ouyang, Ying Jiang, Fuchu He
Software Mentions: 1
Published: about 6 years ago

10.1097/HS9.0000000000000233

AXL Inhibition Extinguishes Primitive JAK2 Mutated Myeloproliferative Neoplasm Progenitor Cells
Cited by: 4
Author(s): Stella Pearson, Rognvald Blance, Tim C. P. Somervaille, Anthony D. Whetton, Andrew Pierce
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-021-01006-w

A blood RNA transcriptome signature for COVID-19
Cited by: 14
Author(s): Philip Kam Weng Kwan, Gail Brenda Cross, Claire M. Naftalin, Bintou Ahmadou Ahidjo, Chee Keng Mok, Felic Fanusi, Intan Permata Sari, Siok Ching Chia, Shoban Krishna Kumar, Rawan AlAgha, Sai Meng Tham, Sophia Archuleta, October M. Sessions, Martin L. Hibberd, Nicholas I. Paton
Software Mentions: 1
Published: over 3 years ago

Projects: pypi: HTSeq

Papers Mentioning HTSeq 3,071