pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-93506-z

Effects of long-term norepinephrine treatment on normal immortalized ovarian and fallopian tube cells
Cited by: 1
Author(s): Sweta Dash, Sean Yoder, Tania Mesa, Andrew T. Smith, Ling Cen, Steven A. Eschrich, Guillermo N. Armaiz-Peña, Alvaro N.A. Monteiro
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-93904-3

Single cell RNA-seq reveals genes vital to in vitro fertilized embryos and parthenotes in pigs
Cited by: 14
Author(s): Zhiqiang Du, Hao Liang, Xiaoman Liu, Yunhua Liu, Chonglong Wang, Yang Ch
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2019.02281

Hsa_circ_0000479 as a Novel Diagnostic Biomarker of Systemic Lupus Erythematosus
Cited by: 57
Author(s): Gangqiang Guo, Huijing Wang, Lele Ye, Xinyu Shi, Kejing Yan, Kuan‐Yu Lin, Qunjia Huang, Baoqing Li, Qiaoai Lin, Lejiang Zhu, Xiangyang Xue, Huidi Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-58106-3

Characterization and potential mechanisms of highly antibiotic tolerant VBNC Escherichia coli induced by low level chlorination
Cited by: 28
Author(s): Chengsong Ye, Huirong Lin, Menglu Zhang, Sheng Chen, Xin Yu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-57285-y

Chronic IL-1β-induced inflammation regulates epithelial-to-mesenchymal transition memory phenotypes via epigenetic modifications in non-small cell lung cancer
Cited by: 53
Author(s): Rui Li, Stephanie L. Ong, Linh M. Tran, Zhe Jing, Bin Liu, Stacy J. Park, Zi Ling Huang, Tonya C. Walser, Eileen L. Heinrich, Gina Lee, Ramin Salehi‐Rad, William P. Crosson, Paul C. Pagano, Manash K. Paul, Shili Xu, Harvey R. Herschman, Kostyantyn Krysan, Steven M. Dubinett
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms22084147

Maternal Heat Stress Alters Expression of Genes Associated with Nutrient Transport Activity and Metabolism in Female Placentae from Mid-Gestating Pigs
Cited by: 10
Author(s): Weicheng Zhao, Fan Liu, C Marth, Mark P. Green, Hoang Viet Le, Brian J Leury, A. W. Bell, Frank R. Dunshea, Jeremy J. Cottrell
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-56017-6

Growth hormone-mediated reprogramming of macrophage transcriptome and effector functions
Cited by: 17
Author(s): Augusto Schneider, Hillary N. Wood, Sandra Geden, Catherine J. Greene, Robin M. Yates, Michał M. Masternak, Kyle H. Rohde
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-55098-7

Co-incidence of RCC-susceptibility polymorphisms with HIF cis-acting sequences supports a pathway tuning model of cancer
Cited by: 9
Author(s): Virginia Schmid, Véronique N. Lafleur, Olivia Lombardi, Ran Li, Rafik Salama, Leandro M. Colli, Hani Choudhry, Stephen J. Chanock, Peter J. Ratcliffe, David R. Mole
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-52513-x

Extracellular vesicles from endothelial progenitor cells prevent steroid-induced osteoporosis by suppressing the ferroptotic pathway in mouse osteoblasts based on bioinformatics evidence
Cited by: 43
Author(s): Jinsen Lu, Jiazhao Yang, Yongshun Zheng, Xiaoyu Chen, Shiyuan Fang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-021-96902-7

Early phase of effective treatment induces distinct transcriptional changes in Mycobacterium tuberculosis expelled by pulmonary tuberculosis patients
Cited by: 1
Author(s): Ambreen Shaikh, Kalpana Sriraman, Smriti Vaswani, Vikas Oswal, Sudha Rao, Nerges Mistry
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-50072-9

Identification of differentially expressed genes and fusion genes associated with malignant progression of spinal cord gliomas by transcriptome analysis
Cited by: 4
Author(s): Dongkang Liu, Jin Wang, Yi Guo, Zhenxing Sun, Guihuai Wang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1007627

Inflammatory monocytes are detrimental to the host immune response during acute infection with Cryptococcus neoformans
Cited by: 40
Author(s): Lena J. Heung, Tobias M. Hohl
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2019.02050

Bach2 Deficiency Leads to Spontaneous Expansion of IL-4-Producing T Follicular Helper Cells and Autoimmunity
Cited by: 33
Author(s): Heng Zhang, Qianwen Hu, Min Zhang, Fang Yang, Cheng Peng, Zhen Zhang, Chuanxin Huang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms22105258

PSII Activity Was Inhibited at Flowering Stage with Developing Black Bracts of Oat
Cited by: 1
Author(s): Bei Liu, Di Zhang, Ming Sun, Manli Li, Xiqing Ma, Shangang Jia, Peisheng Mao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1007440

Neddylation contributes to CD4+ T cell-mediated protective immunity against blood-stage Plasmodium infection
Cited by: 18
Author(s): Qianqian Cheng, Jian Liu, Yujun Pei, Yaolin Zhang, Dawang Zhou, Weiqing Pan, Jiyan Zhang
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.11836

Quantification of nucleic acid quality in postmortem tissues from a cancer research autopsy program
Cited by: 16
Author(s): Jun Fan, Raya Khanin, Hitomi Sakamoto, Yi Zhong, Chelsea Michael, Derwin Pena, Breanna M. Javier, Laura D. Wood, Christine A. Iacobuzio–Donahue
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms160511398

Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress
Cited by: 65
Author(s): Bin Bai, Jun Wu, Wentao Sheng, Bo Zhou, Lean Zhou, Wen Zhuang, Dongping Yao, Qipan Deng
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1006020

Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation
Cited by: 57
Author(s): Christian Berrios, Megha Padi, Mark A. Keibler, Donglim Esther Park, Molla Vadim, Jingwei Cheng, Soo Mi Lee, Gregory Stephanopoulos, John Quackenbush, James A. DeCaprio
Software Mentions: 1
Published: almost 10 years ago

10.1097/HS9.0000000000000233

AXL Inhibition Extinguishes Primitive JAK2 Mutated Myeloproliferative Neoplasm Progenitor Cells
Cited by: 4
Author(s): Stella Pearson, Rognvald Blance, Tim C. P. Somervaille, Anthony D. Whetton, Andrew Pierce
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22115422

Prolonged Transcriptional Consequences in Survivors of Sepsis
Cited by: 3
Author(s): Krzysztof Laudański, James Soh, Matthew DiMeglio, Kathleen E. Sullivan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1005965

A Viral Immunity Chromosome in the Marine Picoeukaryote, Ostreococcus tauri
Cited by: 30
Author(s): Sheree Yau, Hemon Claire, Évelyne Derelle, Hervé Moreau, Gwenaël Piganeau, Nigel Grimsley
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms18092017

Comprehensive Evaluation of TFF3 Promoter Hypomethylation and Molecular Biomarker Potential for Prostate Cancer Diagnosis and Prognosis
Cited by: 13
Author(s): Maibritt Nørgaard, Christa Haldrup, Tine Maj Storebjerg, Else Marie Vestergaard, Peter J. Wild, Søren Høyer, Michael Borre, Torben F. Ørntoft, Karina D. Sørensen
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13099-018-0236-y

Chlortetracycline and florfenicol induce expression of genes associated with pathogenicity in multidrug-resistant Salmonella enterica serovar Typhimurium
Cited by: 8
Author(s): Devin B. Holman, Shawn M. D. Bearson, Bradley L. Bearson, Brian W. Brunelle
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19020488

Transcriptomics Sequencing Provides Insights into Understanding the Mechanism of Grass Carp Reovirus Infection
Cited by: 23
Author(s): Chen Geng, Libo He, Le Luo, Rong Huang, Lanjie Liao, Yongming Li, Zhu Zhang, Yaping Wang
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms19051291

Common microRNA–mRNA Interactions in Different Newcastle Disease Virus-Infected Chicken Embryonic Visceral Tissues
Cited by: 22
Author(s): Yanqing Jia, Xinglong Wang, Xiangwei Wang, C X Yan, Changjie Lv, Xiaoqin Li, Zhili Chu, Fathalrhman Eisa Addoma Adam, Sa Xiao, Shuxia Zhang, Zhicong Yang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1005511

Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection
Cited by: 127
Author(s): Yuan Li, Sheena Shah-Simpson, Kwame Okrah, Ashton T. Belew, Jungmin Choi, Kacey L. Caradonna, Prasad K. Padmanabhan, David Ndegwa, Mohamed-Ramzi Temanni, Héctor Corrada Bravo, Najib M. El-Sayed, Barbara A. Burleigh
Software Mentions: 1
Published: over 10 years ago

10.1093/gigascience/giy030

The first whole transcriptomic exploration of pre-oviposited early chicken embryos using single and bulked embryonic RNA-sequencing
Cited by: 11
Author(s): Young Sun Hwang, Minseok Seo, Hee Jung Choi, Sang Kyung Kim, Heebal Kim, Jae Yong Han
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.00597

Effect of Cinnamaldehyde and Citral Combination on Transcriptional Profile, Growth, Oxidative Damage and Patulin Biosynthesis of Penicillium expansum
Cited by: 68
Author(s): Yuan Wang, Kewei Feng, Haihua Yang, Zhiwei Zhang, Yahong Yuan, Tianli Yue
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.01987

Transcriptomic Changes in Response to Putrescine Production in Metabolically Engineered Corynebacterium glutamicum
Cited by: 15
Author(s): Zhen Li, Jianzhong Liu
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms19082328

Comparative Transcriptomic Analysis of Immune-Related Gene Expression in Duck Embryo Fibroblasts Following Duck Tembusu Virus Infection
Cited by: 19
Author(s): Guanliu Yu, Yun Lin, Yi Tang, Youxiang Diao
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2020.01717

Transcriptome Analysis Revealed Inflammation Is Involved in the Impairment of Human Umbilical Vein Endothelial Cells Induced by Post-hemorrhagic Shock Mesenteric Lymph
Cited by: 5
Author(s): Qi Wang, Zhenfen Chi, Di Wei, Zhen-Ao Zhao, Hong Zhang, Limin Zhang, Yan-Xu Liu, An-Ling Kang, Meng Zhao, Peng Wang, Linghu Nie, Chun‐Yu Niu, Zi‐Gang Zhao
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2018.01445

Anti-Allergic Inflammatory Activity of Interleukin-37 Is Mediated by Novel Signaling Cascades in Human Eosinophils
Cited by: 25
Author(s): Jianhua Zhu, Jie Dong, Junyan Lu, Peiyong Jiang, Ting Fan Leung, Dehua Liu, Lai Guan Ng, Miranda Sin-Man Tsang, Delong Jiao, Christopher Wai‐Kei Lam, Chun‐Kwok Wong
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2020.00322

Genetic and Comparative Transcriptome Analysis Revealed DEGs Involved in the Purple Leaf Formation in Brassica juncea
Cited by: 14
Author(s): Shuangping Heng, Lei Wang, Xi Yang, Hao Huang, Guo Chen, Mengdi Cui, Mingfang Liu, Qing Lv, Zhengjie Wan, Jinxiong Shen, Tingdong Fu
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.00508

Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in Phytophthora infestans
Cited by: 3
Author(s): Xiaowen Wang, Jia-Lu Lv, Yaru Shi, Liyun Guo
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.01046

Complement Genome Annotation Lift Over Using a Weighted Sequence Alignment Strategy
Cited by: 8
Author(s): Baoxing Song, Qing Sang, Hai Wang, Huimin Pei, Xiangchao Gan, Fen Wang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2020.00219

Whole Genome and Transcriptome Sequencing of Two Multi-Drug Resistant Mycobacterium tuberculosis Strains to Facilitate Illustrating Their Virulence in vivo
Cited by: 7
Author(s): Jun Tang, Zhihao Liu, Yanan Shi, Zhan Li, Chuan Qin
Software Mentions: 1
Published: over 6 years ago

10.3389/fcimb.2019.00363

Staphylococcus aureus Small Colony Variants (SCVs): News From a Chronic Prosthetic Joint Infection
Cited by: 57
Author(s): Guilherme Loss, Patrícia Martins Simões, Florent Valour, Marina Farrel Cortês, Luiz Gonzaga, Marine Bergot, Sophie Trouillet‐Assant, Jérôme Josse, Alan Diot, Emiliano P. Ricci, Ana Tereza Ribeiro de Vasconcelos, Frédéric Laurent
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13068-020-01690-3

Gene targets for engineering osmotolerance in Caldicellulosiruptor bescii
Cited by: 2
Author(s): Kyle B. Sander, Daehwan Chung, Dawn M. Klingeman, Richard J. Giannone, Miguel Rodríguez, Jason Whitham, Robert L. Hettich, Brian H. Davison, Janet Westpheling, Steven D. Brown
Software Mentions: 1
Published: over 6 years ago

10.3389/fcimb.2020.00428

Legionella pneumophila Infection Rewires the Acanthamoeba castellanii Transcriptome, Highlighting a Class of Sirtuin Genes
Cited by: 12
Author(s): Pengfei Li, Dane Vassiliadis, Sze Ying Ong, Vicki Bennett-Wood, Chihiro Sugimoto, Junya Yamagishi, Elizabeth L. Hartland, Shivani Pasricha
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.56935

Specific labeling of synaptic schwann cells reveals unique cellular and molecular features
Cited by: 43
Author(s): Ryan Castro, Thomas Taetzsch, Sydney K. Vaughan, Kerilyn N. Godbe, John C. Chappell, Robert E. Settlage, Gregorio Valdez
Software Mentions: 1
Published: about 6 years ago

10.3389/fcell.2021.685741

Comprehensive Analysis of Peripheral Exosomal circRNAs in Large Artery Atherosclerotic Stroke
Cited by: 12
Author(s): Qi Xiao, Ruihua Yin, Yuan Wang, Shaonan Yang, Aijun Ma, Xudong Pan, Xiaoyan Zhu
Software Mentions: 1
Published: about 5 years ago

10.1186/s40478-019-0697-3

Downregulation of miR-204 expression defines a highly aggressive subset of Group 3/Group 4 medulloblastomas
Cited by: 14
Author(s): Harish Shrikrishna Bharambe, Raikamal Paul, Pooja Panwalkar, Rakesh Jalali, Sridhar Epari, Tejpal Gupta, Aliasgar Moiyadi, Prakash Shetty, Sadaf Kazi, Akash Deogharkar, Shalaka Masurkar, Kedar Yogi, Ratika Kunder, Nikhil Gadewal, Atul Goel, Naina Goel, Girish Chinnaswamy, Vijay Ramaswamy, Neelam Shirsat
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2020.554984

The Bone-Forming Properties of Periosteum-Derived Cells Differ Between Harvest Sites
Cited by: 18
Author(s): Lisanne C. Groeneveldt, Tim Herpelinck, Marina Maréchal, Constantinus Politis, Wilfred F. J. van IJcken, Danny Huylebroeck, Liesbet Geris, Eskeatnaf Mulugeta, Frank P. Luyten
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcvm.2021.627380

Transcriptome and N6-Methyladenosine RNA Methylome Analyses in Aortic Dissection and Normal Human Aorta
Cited by: 11
Author(s): Xianwu Zhou, Zerui Chen, Jianrong Zhou, Yaorong Liu, Ruixin Fan, Tucheng Sun
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2020.00157

Gossypium hirsutum Salt Tolerance Is Enhanced by Overexpression of G. arboreum JAZ1
Cited by: 18
Author(s): Ge Zhao, Yun Song, Qianhua Wang, Dongxia Yao, Dongliang Li, Wenqiang Qin, Xiaoyang Ge, Zuoren Yang, Wenying Xu, Zhen Su, Xueyan Zhang, Fuguang Li, Jiahe Wu
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-019-1528-2

Characterization and mechanism of the effects of Mg–Fe layered double hydroxide nanoparticles on a marine bacterium: new insights from genomic and transcriptional analyses
Cited by: 6
Author(s): Wei Ren, Yanshuai Ding, Lide Gu, Wanli Yan, Cang Wang, Mingsheng Lyu, Changhai Wang, Shujun Wang
Software Mentions: 1
Published: about 7 years ago

10.3389/fnagi.2020.00256

Transcriptome Analyses in BV2 Microglial Cells Following Treatment With Amino-Terminal Fragments of Apolipoprotein E
Cited by: 9
Author(s): Tanner B Pollock, Giovan N. Cholico, Noail F Isho, Ryan Day, Tarun Suresh, Erica S. Stewart, Madyson M McCarthy, Troy T. Rohn
Software Mentions: 1
Published: about 6 years ago

10.1186/s13068-015-0418-5

Transcriptional profiling reveals molecular basis and novel genetic targets for improved resistance to multiple fermentation inhibitors in Saccharomyces cerevisiae
Cited by: 82
Author(s): Yingying Chen, Jiayuan Sheng, Tao Jiang, Joseph R. Stevens, Xueyang Feng, Na Wei
Software Mentions: 1
Published: over 10 years ago

10.1186/s13068-017-0807-z

The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa
Cited by: 18
Author(s): Nils Thieme, V. Wu, Axel Dietschmann, Asaf Salamov, Mei Wang, Jenifer Johnson, Vasanth Singan, Igor V. Grigoriev, N. Louise Glass, Chris Somerville, J. Philipp Benz
Software Mentions: 1
Published: over 9 years ago

10.1186/s13018-019-1163-4

Ageing characteristics of bone indicated by transcriptomic and exosomal proteomic analysis of cortical bone cells
Cited by: 16
Author(s): Chenyang Zhang, Shanshan Xu, Shufan Zhang, Mengmeng Liu, Haiming Du, Ruinan Sun, Bo Jing, Yao Sun
Software Mentions: 1
Published: over 7 years ago

10.1186/2045-8118-10-25

Developmental changes in the transcriptome of the rat choroid plexus in relation to neuroprotection
Cited by: 65
Author(s): Ingrid Kratzer, Shane A. Liddelow, NR Saunders, Katarzyna Dziegielewska, Nathalie Strazielle, Jean-François Ghersi-Egea
Software Mentions: 1
Published: about 13 years ago

10.12688/f1000research.8290.2

dbVar structural variant cluster set for data analysis and variant comparison
Cited by: 11
Author(s): Lon Phan, Jeffrey Hsu, Le Quang Minh Tri, Michaela Willi, Tamer Mansour, Yan Kai, John Garner, John Lopez, Ben Busby
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.19887

Neuroendocrine modulation sustains the C. elegans forward motor state
Cited by: 42
Author(s): Manho Lim, Jyothsna Chitturi, Valeriya Laskova, Jun Meng, Daniel Findeis, Anne Wiekenberg, Ben Mulcahy, Linjiao Luo, Yan Li, Yangning Lu, Wesley Hung, Yixin Qu, Chi-Yip Ho, Douglas Holmyard, Ni Ji, Rebecca McWhirter, Aravinthan D. T. Samuel, David M. Miller, Ralf Schnabel, John A. Calarco, Mei Zhen
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13227-018-0111-4

A two-level model for the role of complex and young genes in the formation of organism complexity and new insights into the relationship between evolution and development
Cited by: 10
Author(s): Dong Yang, Aotian Xu, Pan Shen, Chao Gao, Jiayin Zang, Chen Qiu, Hongsheng Ouyang, Ying Jiang, Fuchu He
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-20373-6

Identification of molecular pathways and candidate genes associated with cocks’ comb size trait by genome-wide transcriptome analysis
Cited by: 6
Author(s): Yifan Liu, Yan Tu, Ming Zhang, Gaige Ji, Kun Wang, Yanju Shan, Xiaojun Ju, Di Zhang, Shu JingTing, Jianmin Zou
Software Mentions: 1
Published: over 8 years ago

10.3390/biom10040543

Leptin Signaling Contributes to Aromatase Inhibitor Resistant Breast Cancer Cell Growth and Activation of Macrophages
Cited by: 26
Author(s): Luca Gelsomino, Cinzia Giordano, Giusi La Camera, Diego Sisci, Stefania Marsico, Antonella Campana, Roberta Tarallo, Antonio Rinaldi, Suzanne W. Fuqua, Antonella Leggio, Fedora Grande, Daniela Bonofiglio, Sebastiano Andò, Ines Barone, Stefania Catalano
Software Mentions: 1
Published: over 6 years ago

10.3390/biom10060905

Transcriptome Comparison Reveals Key Components of Nuptial Plumage Coloration in Crested Ibis
Cited by: 1
Author(s): Li Sun, Tong Zhou, Qiu‐Hong Wan, Sheng‐Guo Fang
Software Mentions: 1
Published: over 6 years ago

10.1155/2020/7248513

Effects of Trace Irrigation at Different Depths on Transcriptome Expression Pattern in Cotton (G. hirsutumL.) Leaves
Cited by: 0
Author(s): Liyu Chen, Lifeng Zhang, Zhanyuan Lu, Feng Xian, Jianzhong Zhang, Yu-Chen Cheng, Xiangqian Zhang, Yan Liu
Software Mentions: 1
Published: about 6 years ago

10.1242/bio.024422

<i>Arabidopsis</i>DNA topoisomerase i alpha is required for adaptive response to light and flower development
Cited by: 1
Author(s): E. V. Kupriyanova, E. V. Albert, Aleksandra Bliznina, Polina Mamoshina, Т. А. Ежова
Software Mentions: 1
Published: over 9 years ago

10.1186/s13062-018-0204-y

Finite-size effects in transcript sequencing count distribution: its power-law correction necessarily precedes downstream normalization and comparative analysis
Cited by: 1
Author(s): Wing-Cheong Wong, Hong-kiat Ng, Erwin Tantoso, Richie Soong, Frank Eisenhaber
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-23116-9

Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea
Cited by: 54
Author(s): Mayank Kaashyap, Rebecca Ford, Himabindu Kudapa, Mukesh Jain, David Edwards, Rajeev K. Varshney, Nitin Mantri
Software Mentions: 1
Published: over 8 years ago

10.1155/2018/9194362

The Effects of Radix Astragali Water Abstract on Energy Metabolism in Rat Yang-Deficiency Cold Syndrome Model through PPAR Signaling Pathway
Cited by: 9
Author(s): Wanchen Yu, Haijun Zhao, Xin Zong, Xuming Ji, Xiao Han, Yanfang Wang, Yanan Zhang, Ke Ma, Ning Cui, Shijun Wang
Software Mentions: 1
Published: almost 8 years ago

10.1186/1756-8935-8-9

Altering cancer transcriptomes using epigenomic inhibitors
Cited by: 28
Author(s): Malaina Gaddis, Diana L. Gerrard, Seth Frietze, Peggy J. Farnham
Software Mentions: 1
Published: over 11 years ago

10.1007/s10532-020-09917-8

Transcriptomic response of Gordonia sp. strain NB4-1Y when provided with 6:2 fluorotelomer sulfonamidoalkyl betaine or 6:2 fluorotelomer sulfonate as sole sulfur source
Cited by: 6
Author(s): Eric Bottos, Ebtihal Y Alshabib, Dayton M.J. Shaw, Breanne McAmmond, Aarti Sharma, Danae M. Suchan, Andrew D. S. Cameron, Jonathan D. Van Hamme
Software Mentions: 1
Published: almost 6 years ago

10.1210/en.2016-1929

Genome-Wide Identification of Basic Helix–Loop–Helix and NF-1 Motifs Underlying GR Binding Sites in Male Rat Hippocampus
Cited by: 23
Author(s): John R. Pooley, Benjamin P. Flynn, Lars Grøntved, Songjoon Baek, Michael J. Guertin, Yvonne M. Kershaw, Matthew T. Birnie, A. Pellatt, Caroline A Rivers, R. Louis Schiltz, Gordon L. Hager, Stafford L. Lightman, Becky Conway-Campbell
Software Mentions: 1
Published: over 9 years ago

10.1186/s13104-020-4936-2

Reliability and correlation of mixture cell correction in methylomic and transcriptomic blood data
Cited by: 4
Author(s): Boris Chaumette, Oussama Kébir, Patrick A. Dion, Guy A. Rouleau, Marie‐Odile Krebs
Software Mentions: 1
Published: over 6 years ago

10.15252/embr.201845766

<scp>FET</scp> family fusion oncoproteins target the <scp>SWI</scp> / <scp>SNF</scp> chromatin remodeling complex
Cited by: 47
Author(s): Malin Lindén, Christer Thomsen, Pernilla Grundevik, Emma Jonasson, Daniel Andersson, Rikard Runnberg, Soheila Dolatabadi, Christoffer Vannas, Manuel Luna Santamaría, Henrik Fagman, Anders Ståhlberg, Pierre Åman
Software Mentions: 1
Published: over 7 years ago

10.1186/s13104-019-4671-8

Expression of microRNA in human retinal pigment epithelial cells following infection with Zaire ebolavirus
Cited by: 8
Author(s): Genevieve F. Oliver, Ayla Valinezhad Orang, Binoy Appukuttan, Shashikanth Marri, Michael Michael, Glenn A. Marsh, Justine R. Smith
Software Mentions: 1
Published: almost 7 years ago

10.15252/embr.201642540

Loss of Nat4 and its associated histone H4 N‐terminal acetylation mediates calorie restriction‐induced longevity
Cited by: 37
Author(s): Diego Molina‐Serrano, Vassia Schiza, Christis Demosthenous, Emmanouil Stavrou, Jan Oppelt, Dimitris Kyriakou, Wei Liu, Gertrude Zisser, Helmut Bergler, Weiwei Dang, Antonis Kirmizis
Software Mentions: 1
Published: almost 10 years ago

10.15252/emmm.201607315

<scp>MG</scp>132‐induced progerin clearance is mediated by autophagy activation and splicing regulation
Cited by: 86
Author(s): Karim Harhouri, Claire Navarro, Danielle Depetris, Marie‐Geneviève Matteï, Xavier Nissan, Pierre Cau, Annachiara De Sandre‐Giovannoli, Nicolas Lévy
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-25483-9

Identification of target genes regulated by the Drosophila histone methyltransferase Eggless reveals a role of Decapentaplegic in apoptotic signaling
Cited by: 6
Author(s): Igojo Kang, Yourim Choi, Sueun Jung, Jae Yun Lim, Dong Hoon Lee, Sumeet Gupta, Woongjoon Moon, Chanseok Shin
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.61539

Ral GTPases promote breast cancer metastasis by controlling biogenesis and organ targeting of exosomes
Cited by: 61
Author(s): Shima Ghoroghi, Benjamin Mary, Annabel Larnicol, Nandini Asokan, Albrecht Klein, Naël Osmani, Ignacio Busnelli, François Delalande, Nicodème Paul, Sébastien Halary, Frédéric Gros, Laëtitia Fouillen, Anne‐Marie Haeberlé, Cathy Royer, Coralie Spiegelhalter, Gwennan André-Grégoire, Vincent Mittelheisser, Alexandre Detappe, Kendelle J. Murphy, Paul Timpson, Raphaël Carapito, Marcel Blot‐Chabaud, Julie Gavard, Nicolas Vitale, Olivier Lefèbvre, Jacky G. Goetz, Vincent Hyenne
Software Mentions: 1
Published: over 5 years ago

10.1186/s13104-018-3165-4

Increased whole blood FFA2/GPR43 receptor expression is associated with increased 30-day survival in patients with sepsis
Cited by: 7
Author(s): Zyad J. Carr, Andry Van de Louw, Graham Fehr, Jialiu D. Li, Allen R. Kunselman, Victor Ruiz‐Velasco
Software Mentions: 1
Published: over 8 years ago

10.15252/emmm.202012632

SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function
Cited by: 21
Author(s): Moo-Ho Bae, Junyeop Daniel Roh, You Joung Kim, Seong Soon Kim, Hye Min Han, Esther Yang, Hyojin Kang, Suho Lee, Jin Yong Kim, Ryeonghwa Kang, Hwajin Jung, Taesun Yoo, Hyosang Kim, Doyoun Kim, Heejeong Oh, Sungwook Han, Dayeon Kim, Jinju Han, Yong Chul Bae, Hyun Kim, Sunjoo Ahn, Andrew M. Chan, Daeyoup Lee, Jin Woo Kim, Eunjoon Kim
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-014-0335-y

Distinct transcriptional profiles of ozone stress in soybean (Glycine max) flowers and pods
Cited by: 10
Author(s): Courtney P. Leisner, Ray Ming, Elizabeth A. Ainsworth
Software Mentions: 1
Published: almost 12 years ago

10.1016/j.ebiom.2017.10.024

Restricted Presence of POU6F2 in Human Corneal Endothelial Cells Uncovered by Extension of the Promoter-level Expression Atlas
Cited by: 7
Author(s): Masahito Yoshihara, Shotaro Hara, Motokazu Tsujikawa, Satoshi Kawasaki, Yoshihide Hayashizaki, Masayoshi Itoh, Hideya Kawaji, Kohji Nishida
Software Mentions: 1
Published: almost 9 years ago

10.1093/database/bay075

RabGTD: a comprehensive database of rabbit genome and transcriptome
Cited by: 12
Author(s): Lu Zhou, Qingyu Xiao, Jie Bi, Zhen Wang, Yixue Li
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-27565-0

RNA-Seq reveals large quantitative differences between the transcriptomes of outbreak and non-outbreak locusts
Cited by: 9
Author(s): Mohammed Bakkali, Rubén Martín-Blázquez
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-014-0249-8

Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris)
Cited by: 92
Author(s): Ralf Stracke, Daniela Holtgräwe, Jessica Schneider, Boas Pucker, Thomas Rosleff Sörensen, Bernd Weißhaar
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12870-020-02425-0

Transcriptomic analysis reveals mechanism of light-sensitive albinism in tea plant Camellia sinensis ‘Huangjinju’
Cited by: 20
Author(s): Xinfeng Jiang, Hua Zhao, Fei Guo, Xuping Shi, Chuan Ye, Ping Yang, Benying Liu, Dejiang Ni
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-019-2010-9

GhFAD2–3 is required for anther development in Gossypium hirsutum
Cited by: 9
Author(s): Liping Feng, Lihong Ma, Youwu Wang, Yanjun Li, Xinyu Zhang, Fei Xue, Xiaoqin Nie, Qian-Hao Zhu, Jie Sun
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-28239-7

ETV1 activates a rapid conduction transcriptional program in rodent and human cardiomyocytes
Cited by: 23
Author(s): Akshay Shekhar, Xianming Lin, Bin Lin, Fang-Yu Liu, Jie Zhang, Alireza Khodadadi‐Jamayran, Aristotelis Tsirigos, Lei Bu, Glenn I. Fishman, David Park
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.27155

IGF2 mRNA binding protein-2 is a tumor promoter that drives cancer proliferation through its client mRNAs IGF2 and HMGA1
Cited by: 73
Author(s): Ning Dai, Fei Ji, Jason Wright, Liliana Minichiello, Ruslan I. Sadreyev, Joseph Avruch
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-28485-9

Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome
Cited by: 88
Author(s): Helena Sork, Giulia Corso, Kaarel Krjutškov, Henrik J. Johansson, Joel Z. Nordin, Oscar P. B. Wiklander, Yi Xin Fiona Lee, Jakub Orzechowski Westholm, Janne Lehtiö, Matthew Wood, Imre Mäger, Samir El Andaloussi
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2018.08.188

Transcriptomic data on the role of PEST-domain-enriched tyrosine phosphatase in the regulation of antigen-mediated activation and antiallergic action of glucocorticoids in mast cells
Cited by: 1
Author(s): George K. Ainooson, Victor Gourain, Michael Stassen, Andrew C. B. Cato
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.dib.2020.106563

MicroRNA expression data of pluripotent and somatic cells and identification of cell type-specific MicroRNAs in pigs
Cited by: 0
Author(s): Jong‐Nam Oh, Dong Hoon Son, Kwang‐Hwan Choi, Jae Yeon Hwang, Dong‐Kyung Lee, Seung‐Hun Kim, Mingyun Lee, Jinsol Jeong, Gyung Cheol Choe, Chang Kyu Lee
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.dib.2017.01.001

Dataset for distribution of SIDER2 elements in the Leishmania major genome and transcriptome
Cited by: 0
Author(s): José Marı́a Requena, Alberto Rastrojo, Esther Garde, Manuel Carlos López, M. Carmen Thomas, Begoña Aguado
Software Mentions: 1
Published: over 9 years ago

10.1186/s12870-018-1449-4

Transcriptome analysis of radish sprouts hypocotyls reveals the regulatory role of hydrogen-rich water in anthocyanin biosynthesis under UV-A
Cited by: 24
Author(s): Xiaoyan Zhang, Nana Su, Jia Li, Jing Tian, Han Li, Huang Lei, Zhenguo Shen, Jin Chen
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-019-2176-1

Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis
Cited by: 21
Author(s): Qian Wu, Mingliang Du, Jie Wu, Ning Wang, Baomin Wang, Fangjun Li, Xiaoli Tian, Zhaohu Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-021-02993-9

Comparative transcriptomic analysis of candidate effectors to explore the infection and survival strategy of Bursaphelenchus xylophilus during different interaction stages with pine trees
Cited by: 7
Author(s): Longjiao Hu, Xiao‐Qin Wu, Xiaolei Ding, Jian‐Ren Ye
Software Mentions: 1
Published: over 5 years ago

10.3390/ani10112111

Identification and Characterization of Hypothalamic Alternative Splicing Events and Variants in Ovine Fecundity-Related Genes
Cited by: 2
Author(s): Zhuangbiao Zhang, Jiao Tang, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang, Wenping Hu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-30972-y

Mutations causing low level antibiotic resistance ensure bacterial survival in antibiotic-treated hosts
Cited by: 55
Author(s): Jakob Frimodt-Møller, Elio Rossi, Janus Anders Juul Haagensen, Falcone Marilena, Søren Molin, Helle Krogh Johansen
Software Mentions: 1
Published: about 8 years ago

10.1186/s12870-020-02583-1

Comparative transcriptome analysis provides insight into regulation pathways and temporal and spatial expression characteristics of grapevine (Vitis vinifera) dormant buds in different nodes
Cited by: 9
Author(s): Lingfei Shangguan, Mengxia Chen, Xiang Fang, Zhihua Xie, Pan Gong, Yuxiang Huang, Zicheng Wang, Jinggui Fang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-30821-y

Molecular and physiological responses in roots of two full-sib poplars uncover mechanisms that contribute to differences in partial submergence tolerance
Cited by: 14
Author(s): Yanjie Peng, Zhixiang Zhou, Zhe Zhang, Xiaoli Yu, XinYe Zhang, Kun Du
Software Mentions: 1
Published: about 8 years ago

10.1016/j.dib.2020.105432

RNA-seq data from whole rice grains of pigmented and non-pigmented Malaysian rice varieties
Cited by: 5
Author(s): Rabiatul-Adawiah Zainal-Abidin, Zamri Zainal, Zeti‐Azura Mohamed‐Hussein, Norliza Abu Bakar, Shahril Ab Razak, Sanimah Simoh, Yun Shin Sew
Software Mentions: 1
Published: over 6 years ago

10.1186/s12866-021-02218-x

Antisense yycG modulates the susceptibility of Staphylococcus aureus to hydrogen peroxide via the sarA
Cited by: 6
Author(s): Shizhou Wu, Yunjie Liu, Lei Lei, Hui Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-019-1469-8

Burkholderia thailandensis strain E555 is a surrogate for the investigation of Burkholderia pseudomallei replication and survival in macrophages
Cited by: 17
Author(s): Andrea Kovacs-Simon, Claudia Hemsley, Andrew E. Scott, Joann L. Prior, Richard W. Titball
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.01179

Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
Cited by: 323
Author(s): Joshua G. Dunn, Catherine K. Foo, Nicolette G Belletier, Elizabeth R. Gavis, Jonathan S. Weissman
Software Mentions: 1
Published: almost 13 years ago

10.1155/2019/9706792

The Specific Inhibition of SOD1 Selectively Promotes Apoptosis of Cancer Cells via Regulation of the ROS Signaling Network
Cited by: 18
Author(s): Xiang Li, Yuanyuan Chen, Jidong Zhao, Jiayuan Shi, Mingfang Wang, Shuang Qiu, Yinghui Hu, Yan Xu, Yanfang Cui, Chunrong Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-020-1705-2

An operon consisting of a P-type ATPase gene and a transcriptional regulator gene responsible for cadmium resistances in Bacillus vietamensis 151–6 and Bacillus marisflavi 151–25
Cited by: 18
Author(s): Xiaoxia Yu, Zundan Ding, Yafei Ji, Jintong Zhao, Xiaoqing Liu, Jian Tian, Ningfeng Wu, Yanting Fan
Software Mentions: 1
Published: over 6 years ago

Projects: pypi: HTSeq

Science Score: 65/100

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Papers Mentioning HTSeq 3,071