pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.7554/eLife.39823

A virus-packageable CRISPR screen identifies host factors mediating interferon inhibition of HIV
Cited by: 94
Author(s): Molly OhAinle, Louisa Helms, Jolien Vermeíre, Ferdinand Roesch, Daryl Humes, Ryan Basom, Jeffrey J. Delrow, Julie Overbaugh, Michael Emerman
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.19942

Genome-wide identification of neuronal activity-regulated genes in Drosophila
Cited by: 67
Author(s): Chen Xiao, Reazur Rahman, Fang Guo, Michael Rosbash
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.39381

Zygotic gene activation in the chicken occurs in two waves, the first involving only maternally derived genes
Cited by: 12
Author(s): Young Sun Hwang, Minseok Seo, Sang Kyung Kim, Sohyun Bang, Heebal Kim, Jae Yong Han
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.44392

A de novo evolved gene in the house mouse regulates female pregnancy cycles
Cited by: 31
Author(s): Chen Xie, Cemalettin Bekpen, Sven Künzel, Maryam Keshavarz, Rebecca Krebs-Wheaton, Neva Škrabar, Kristian K. Ullrich, Diethard Tautz
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.18904

Oxytocin improves behavioral and electrophysiological deficits in a novel Shank3-deficient rat
Cited by: 112
Author(s): Hala Harony‐Nicolas, Maya Kay, Johann du Hoffmann, Matthew Klein, Ozlem Bozdagi-Gunal, Mohammed Riad, Nikolaos P. Daskalakis, Sankalp Sonar, Pablo E. Castillo, Patrick R. Hof, Matthew L. Shapiro, Mark G. Baxter, Shlomo Wagner, Joseph D. Buxbaum
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.03189

The transcriptional response to tumorigenic polarity loss in Drosophila
Cited by: 100
Author(s): Brandon D. Bunker, Tittu Thomas Nellimoottil, Ryan M. Boileau, Anne-Kathrin Classen, David Bilder
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.52549

c-Maf restrains T-bet-driven programming of CCR6-negative group 3 innate lymphoid cells
Cited by: 20
Author(s): Caroline Tizian, Annette Lahmann, Oliver Hölsken, Catalina Cosovanu, Michael Kofoed-Branzk, Frederik Heinrich, Mir‐Farzin Mashreghi, Andrey Kruglov, Andreas Diefenbach, Christian Neumann
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.63512

Promoter-specific changes in initiation, elongation, and homeostasis of histone H3 acetylation during CBP/p300 inhibition
Cited by: 22
Author(s): Emily Hsu, Nathan R. Zemke, Arnold Berk
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.20059

MEF2C regulates cortical inhibitory and excitatory synapses and behaviors relevant to neurodevelopmental disorders
Cited by: 134
Author(s): Adam J. Harrington, Aram Raissi, Kacey Rajkovich, Stefano Berto, Jaswinder Kumar, Gemma Molinaro, Jonathan Raduazzo, Yuhong Guo, Kris Loerwald, Genevieve Konopka, Kimberly M. Huber, Christopher W. Cowan
Software Mentions: 2
Published: almost 10 years ago

10.7554/eLife.31347

The asymmetrically segregating lncRNA cherub is required for transforming stem cells into malignant cells
Cited by: 26
Author(s): Lisa Landskron, Victoria Steinmann, François Bonnay, Thomas R Burkard, Jonas Steinmann, Ilka Reichardt, Heike Harzer, Anne-Sophie Laurenson, Heinrich Reichert, Juergen A. Knoblich
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.23032

Integrated hepatic transcriptional and serum metabolic studies on circulating nutrient metabolism in diurnal laying hens.
Cited by: 2
Author(s): Dan Wan, Yilin Liu, Guan-ya Li, Huang RuiLin, Yiming Zhang, Cimin Long, Zheng Ruan, Lan Li, Xin Wu, Xin Zhou, Yulong Yin
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.23623

Piperlongumine potentiates the effects of gemcitabine in <i>in vitro</i> and <i>in vivo</i> human pancreatic cancer models
Cited by: 21
Author(s): Jiyan Mohammad, Harsharan Dhillon, Shireen Chikara, Sujan Mamidi, Avinash Sreedasyam, Kishore Chittem, Megan Orr, John Wilkinson, Katie M. Reindl
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.24422

Human tripartite motif protein 52 is required for cell context-dependent proliferation
Cited by: 11
Author(s): Stefan Benke, Benedikt Agerer, Linda Haas, Martin Stöger, Alexander Lercher, Lisa Gabler, Izabella Kiss, Sara Scinicariello, Walter Berger, Andréas Bergthaler, Anna C. Obenauf, Gijs A. Versteeg
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.28056

The antitumoral effects of chemerin are independent from leukocyte recruitment and mediated by inhibition of neoangiogenesis
Cited by: 7
Author(s): Ingrid Dubois-Vedrenne, Diana D.A.D. Al Delbany, Olivier De Henau, Virginie Robert, Maxime Vernimmen, Francina Langa, Anne Lefort, Frédérick Libert, Valérie Wittamer, Marc Parmentier
Software Mentions: 2
Published: about 5 years ago

10.1002/path.5557

Histone demethylase <scp>PHF8</scp> drives neuroendocrine prostate cancer progression by epigenetically upregulating <scp>FOXA2</scp>
Cited by: 30
Author(s): Qiuli Liu, Junfeng Pang, Lin-Ang Wang, Zhuowei Huang, Jing Xu, Xiaojiao Yang, Qiubo Xie, Yi Huang, Tang Tang, Dali Tong, Gaolei Liu, Luofu Wang, Dianzheng Zhang, Qiang Ma, Hualiang Xiao, Weihua Lan, Jun Qin, Jun Jiang
Software Mentions: 2
Published: almost 6 years ago

10.3390/jpm8030029

Individualized Transcriptional Resolution of Complicated Malaria in a Colombian Study
Cited by: 2
Author(s): Mónica L. Rojas-Peña, Meixue Duan, Dalia Arafat, Lina M. Rengifo, Sócrates Herrera, Myriam Arévalo‐Herrera, Greg Gibson
Software Mentions: 2
Published: about 8 years ago

10.1016/j.joca.2016.03.007

Gene expression changes in damaged osteoarthritic cartilage identify a signature of non-chondrogenic and mechanical responses
Cited by: 92
Author(s): Sara Dunn, Jamie Soul, Sanjay Anand, Jean-Marc Schwartz, Raymond P. Boot-Handford, Timothy E. Hardingham
Software Mentions: 2
Published: about 10 years ago

10.1128/JVI.00651-16

Complete Unique Genome Sequence, Expression Profile, and Salivary Gland Tissue Tropism of the Herpesvirus 7 Homolog in Pigtailed Macaques
Cited by: 9
Author(s): Jeannette P. Staheli, Michael R. Dyen, Gail H. Deutsch, Ryan Basom, Matthew Fitzgibbon, Patrick A. Lewis, Serge Barcy
Software Mentions: 2
Published: about 10 years ago

10.1128/JVI.01703-17

Prasinovirus Attack of Ostreococcus Is Furtive by Day but Savage by Night
Cited by: 17
Author(s): Évelyne Derelle, Sheree Yau, Hervé Moreau, Nigel Grimsley
Software Mentions: 2
Published: over 8 years ago

10.1155/2019/6595189

Hypoxia-Activated PI3K/Akt Inhibits Oxidative Stress via the Regulation of Reactive Oxygen Species in Human Dental Pulp Cells
Cited by: 24
Author(s): Fei Liu, Xin Huang, Zhenhua Luo, Jing-jun He, Farhan Haider, Ci Song, Ling Peng, Ting Chen, Buling Wu
Software Mentions: 2
Published: over 7 years ago

10.1155/2021/8049079

Yixin-Shu Capsules Ameliorated Ischemia-Induced Heart Failure by Restoring Trx2 and Inhibiting JNK/p38 Activation
Cited by: 4
Author(s): Changpei Xiang, Fangbo Zhang, Jinhuan Gao, Feifei Guo, Mao Zhang, Rui Zhou, Junying Wei, Ping Wang, Yi Zhang, Jingjing Zhang, Hongjun Yang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-014-0335-y

Distinct transcriptional profiles of ozone stress in soybean (Glycine max) flowers and pods
Cited by: 10
Author(s): Courtney P. Leisner, Ray Ming, Elizabeth A. Ainsworth
Software Mentions: 1
Published: almost 12 years ago

10.3389/fimmu.2018.01482

The Transcription Factor Zfx Regulates Peripheral T Cell Self-Renewal and Proliferation
Cited by: 9
Author(s): Matthew Smith-Raska, Teresita L. Arenzana, Louise M D’Cruz, Alireza Khodadadi‐Jamayran, Aristotelis Tsirigos, Ananda W. Goldrath, Boris Reizis
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2019.00611

Inducible Bronchus-Associated Lymphoid Tissues (iBALT) Serve as Sites of B Cell Selection and Maturation Following Influenza Infection in Mice
Cited by: 37
Author(s): Hyon-Xhi Tan, Robyn Esterbauer, Hillary A. Vanderven, Jennifer A Juno, Stephen J. Kent, Adam K. Wheatley
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-27565-0

RNA-Seq reveals large quantitative differences between the transcriptomes of outbreak and non-outbreak locusts
Cited by: 9
Author(s): Mohammed Bakkali, Rubén Martín-Blázquez
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-014-0249-8

Genome-wide identification and characterisation of R2R3-MYB genes in sugar beet (Beta vulgaris)
Cited by: 92
Author(s): Ralf Stracke, Daniela Holtgräwe, Jessica Schneider, Boas Pucker, Thomas Rosleff Sörensen, Bernd Weißhaar
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12870-020-02425-0

Transcriptomic analysis reveals mechanism of light-sensitive albinism in tea plant Camellia sinensis ‘Huangjinju’
Cited by: 20
Author(s): Xinfeng Jiang, Hua Zhao, Fei Guo, Xuping Shi, Chuan Ye, Ping Yang, Benying Liu, Dejiang Ni
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-019-2010-9

GhFAD2–3 is required for anther development in Gossypium hirsutum
Cited by: 9
Author(s): Liping Feng, Lihong Ma, Youwu Wang, Yanjun Li, Xinyu Zhang, Fei Xue, Xiaoqin Nie, Qian-Hao Zhu, Jie Sun
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-28239-7

ETV1 activates a rapid conduction transcriptional program in rodent and human cardiomyocytes
Cited by: 23
Author(s): Akshay Shekhar, Xianming Lin, Bin Lin, Fang-Yu Liu, Jie Zhang, Alireza Khodadadi‐Jamayran, Aristotelis Tsirigos, Lei Bu, Glenn I. Fishman, David Park
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.27155

IGF2 mRNA binding protein-2 is a tumor promoter that drives cancer proliferation through its client mRNAs IGF2 and HMGA1
Cited by: 73
Author(s): Ning Dai, Fei Ji, Jason Wright, Liliana Minichiello, Ruslan I. Sadreyev, Joseph Avruch
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-28485-9

Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome
Cited by: 88
Author(s): Helena Sork, Giulia Corso, Kaarel Krjutškov, Henrik J. Johansson, Joel Z. Nordin, Oscar P. B. Wiklander, Yi Xin Fiona Lee, Jakub Orzechowski Westholm, Janne Lehtiö, Matthew Wood, Imre Mäger, Samir El Andaloussi
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2021.696766

Targeting Purinergic Receptor P2RX1 Modulates Intestinal Microbiota and Alleviates Inflammation in Colitis
Cited by: 9
Author(s): Xu Wang, Xin Yuan, Yu-Ting Su, Jing Hu, Qian Ji, Shengqiao Fu, Rongkun Li, Li-Peng Hu, Cuixia Dai
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2021.584414

Interleukin-22 From Type 3 Innate Lymphoid Cells Aggravates Lupus Nephritis by Promoting Macrophage Infiltration in Lupus-Prone Mice
Cited by: 8
Author(s): Lingzhen Hu, Jingyi Hu, Liheng Chen, Yi Zhang, Qingqing Wang, Xuyan Yang
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.02737

Harnessing the Immunomodulatory Properties of Bacterial Ghosts to Boost the Anti-mycobacterial Protective Immunity
Cited by: 13
Author(s): Jieling Lim, Vanessa Hui Qi Koh, Sharol Su Lei Cho, Balamurugan Periaswamy, Dawn Poh Sum Choi, Maurizio Vacca, Paola Flórez de Sessions, Pavol Kudela, Werner Lubitz, Giorgia Pastorin, Sylvie Alonso
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-018-1449-4

Transcriptome analysis of radish sprouts hypocotyls reveals the regulatory role of hydrogen-rich water in anthocyanin biosynthesis under UV-A
Cited by: 24
Author(s): Xiaoyan Zhang, Nana Su, Jia Li, Jing Tian, Han Li, Huang Lei, Zhenguo Shen, Jin Chen
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-019-2176-1

Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis
Cited by: 21
Author(s): Qian Wu, Mingliang Du, Jie Wu, Ning Wang, Baomin Wang, Fangjun Li, Xiaoli Tian, Zhaohu Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-021-02993-9

Comparative transcriptomic analysis of candidate effectors to explore the infection and survival strategy of Bursaphelenchus xylophilus during different interaction stages with pine trees
Cited by: 7
Author(s): Longjiao Hu, Xiao‐Qin Wu, Xiaolei Ding, Jian‐Ren Ye
Software Mentions: 1
Published: over 5 years ago

10.3390/ani10112111

Identification and Characterization of Hypothalamic Alternative Splicing Events and Variants in Ovine Fecundity-Related Genes
Cited by: 2
Author(s): Zhuangbiao Zhang, Jiao Tang, Xiaoyun He, Ran Di, Xiaosheng Zhang, Jinlong Zhang, Wenping Hu
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-30972-y

Mutations causing low level antibiotic resistance ensure bacterial survival in antibiotic-treated hosts
Cited by: 55
Author(s): Jakob Frimodt-Møller, Elio Rossi, Janus Anders Juul Haagensen, Falcone Marilena, Søren Molin, Helle Krogh Johansen
Software Mentions: 1
Published: about 8 years ago

10.1186/s12870-020-02583-1

Comparative transcriptome analysis provides insight into regulation pathways and temporal and spatial expression characteristics of grapevine (Vitis vinifera) dormant buds in different nodes
Cited by: 9
Author(s): Lingfei Shangguan, Mengxia Chen, Xiang Fang, Zhihua Xie, Pan Gong, Yuxiang Huang, Zicheng Wang, Jinggui Fang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-30821-y

Molecular and physiological responses in roots of two full-sib poplars uncover mechanisms that contribute to differences in partial submergence tolerance
Cited by: 14
Author(s): Yanjie Peng, Zhixiang Zhou, Zhe Zhang, Xiaoli Yu, XinYe Zhang, Kun Du
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2018.01364

Transforming Growth Factor-β and Interleukin-10 Synergistically Regulate Humoral Immunity via Modulating Metabolic Signals
Cited by: 63
Author(s): Takashi Komai, Mariko Inoue, Tomohisa Okamura, Kaoru Morita, Yukiko Iwasaki, Shuji Sumitomo, Hirofumi Shoda, Kazuhiko Yamamoto, Keishi Fujio
Software Mentions: 1
Published: over 8 years ago

10.1186/s12866-021-02218-x

Antisense yycG modulates the susceptibility of Staphylococcus aureus to hydrogen peroxide via the sarA
Cited by: 6
Author(s): Shizhou Wu, Yunjie Liu, Lei Lei, Hui Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12866-019-1469-8

Burkholderia thailandensis strain E555 is a surrogate for the investigation of Burkholderia pseudomallei replication and survival in macrophages
Cited by: 17
Author(s): Andrea Kovacs-Simon, Claudia Hemsley, Andrew E. Scott, Joann L. Prior, Richard W. Titball
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.01179

Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
Cited by: 323
Author(s): Joshua G. Dunn, Catherine K. Foo, Nicolette G Belletier, Elizabeth R. Gavis, Jonathan S. Weissman
Software Mentions: 1
Published: almost 13 years ago

10.1155/2019/9706792

The Specific Inhibition of SOD1 Selectively Promotes Apoptosis of Cancer Cells via Regulation of the ROS Signaling Network
Cited by: 18
Author(s): Xiang Li, Yuanyuan Chen, Jidong Zhao, Jiayuan Shi, Mingfang Wang, Shuang Qiu, Yinghui Hu, Yan Xu, Yanfang Cui, Chunrong Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-020-1705-2

An operon consisting of a P-type ATPase gene and a transcriptional regulator gene responsible for cadmium resistances in Bacillus vietamensis 151–6 and Bacillus marisflavi 151–25
Cited by: 18
Author(s): Xiaoxia Yu, Zundan Ding, Yafei Ji, Jintong Zhao, Xiaoqing Liu, Jian Tian, Ningfeng Wu, Yanting Fan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12920-021-01006-w

A blood RNA transcriptome signature for COVID-19
Cited by: 14
Author(s): Philip Kam Weng Kwan, Gail Brenda Cross, Claire M. Naftalin, Bintou Ahmadou Ahidjo, Chee Keng Mok, Felic Fanusi, Intan Permata Sari, Siok Ching Chia, Shoban Krishna Kumar, Rawan AlAgha, Sai Meng Tham, Sophia Archuleta, October M. Sessions, Martin L. Hibberd, Nicholas I. Paton
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.02281

Hsa_circ_0000479 as a Novel Diagnostic Biomarker of Systemic Lupus Erythematosus
Cited by: 57
Author(s): Gangqiang Guo, Huijing Wang, Lele Ye, Xinyu Shi, Kejing Yan, Kuan‐Yu Lin, Qunjia Huang, Baoqing Li, Qiaoai Lin, Lejiang Zhu, Xiangyang Xue, Huidi Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fimmu.2019.02050

Bach2 Deficiency Leads to Spontaneous Expansion of IL-4-Producing T Follicular Helper Cells and Autoimmunity
Cited by: 33
Author(s): Heng Zhang, Qianwen Hu, Min Zhang, Fang Yang, Cheng Peng, Zhen Zhang, Chuanxin Huang
Software Mentions: 1
Published: about 7 years ago

10.1186/s12865-020-00356-x

Involvement of ABC-transporters and acyltransferase 1 in intracellular cholesterol-mediated autophagy in bovine alveolar macrophages in response to the Bacillus Calmette-Guerin (BCG) infection
Cited by: 7
Author(s): Jinrui Xu, Yongzhao Zhou, Yi Yang, Cuiping Lv, Xiaoming Liu, Yujiong Wang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-33838-5

Neurogenin3 phosphorylation controls reprogramming efficiency of pancreatic ductal organoids into endocrine cells
Cited by: 16
Author(s): Roberta Azzarelli, Steffen Rulands, Sonia Nestorowa, John Dwyfor Davies, Sara Campinoti, Sébastien Gillotin, Paola Bonfanti, Berthold Göttgens, Meritxell Huch, Benjamin D. Simons, Anna Philpott
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2020.01717

Transcriptome Analysis Revealed Inflammation Is Involved in the Impairment of Human Umbilical Vein Endothelial Cells Induced by Post-hemorrhagic Shock Mesenteric Lymph
Cited by: 5
Author(s): Qi Wang, Zhenfen Chi, Di Wei, Zhen-Ao Zhao, Hong Zhang, Limin Zhang, Yan-Xu Liu, An-Ling Kang, Meng Zhao, Peng Wang, Linghu Nie, Chun‐Yu Niu, Zi‐Gang Zhao
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-020-07004-z

A new mechanism for a familiar mutation – bovine DGAT1 K232A modulates gene expression through multi-junction exon splice enhancement
Cited by: 11
Author(s): Tania Fink, Thomas Lopdell, Kathryn Tiplady, Renee Handley, Thomas Johnson, Richard Spelman, Stephen R. Davis, Russell G. Snell, Mathew D Littlejohn
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2018.01445

Anti-Allergic Inflammatory Activity of Interleukin-37 Is Mediated by Novel Signaling Cascades in Human Eosinophils
Cited by: 25
Author(s): Jianhua Zhu, Jie Dong, Junyan Lu, Peiyong Jiang, Ting Fan Leung, Dehua Liu, Lai Guan Ng, Miranda Sin-Man Tsang, Delong Jiao, Christopher Wai‐Kei Lam, Chun‐Kwok Wong
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2020.00322

Genetic and Comparative Transcriptome Analysis Revealed DEGs Involved in the Purple Leaf Formation in Brassica juncea
Cited by: 14
Author(s): Shuangping Heng, Lei Wang, Xi Yang, Hao Huang, Guo Chen, Mengdi Cui, Mingfang Liu, Qing Lv, Zhengjie Wan, Jinxiong Shen, Tingdong Fu
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.00508

Comparative Transcriptome Analysis Revealed Genes Regulated by Histone Acetylation and Genes Related to Sex Hormone Biosynthesis in Phytophthora infestans
Cited by: 3
Author(s): Xiaowen Wang, Jia-Lu Lv, Yaru Shi, Liyun Guo
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2018.00739

Defining Key Genes Regulating Morphogenesis of Apocrine Sweat Gland in Sheepskin
Cited by: 13
Author(s): Shaomei Li, Xin Zheng, Yangfan Nie, Wenshuo Chen, Zhiwei Liu, Yingfeng Tao, Xuewen Hu, Yong Hu, Haisheng Qiao, Quanqing Qi, Quanbang Pei, Danzhuoma Cai, Mei Yu, Chunyan Mou
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2021.661306

Identification of an EMT-Related Gene Signature for Predicting Overall Survival in Gastric Cancer
Cited by: 18
Author(s): Weiyu Dai, Yizhi Xiao, Weimei Tang, Jiaying Li, Linjie Hong, Jieming Zhang, Miaomiao Pei, Jing Lin, Side Liu, Xiaosheng Wu, Xiang Li, Jide Wang
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-020-06842-1

Genome-wide identification and characterization of multiple C2 domains and transmembrane region proteins in Gossypium hirsutum
Cited by: 6
Author(s): Pengbo Hao, Hantao Wang, Liang Ma, Aimin Wu, Pengyun Chen, Shuaishuai Cheng, Hengling Wei, Shuxun Yu
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2019.01046

Complement Genome Annotation Lift Over Using a Weighted Sequence Alignment Strategy
Cited by: 8
Author(s): Baoxing Song, Qing Sang, Hai Wang, Huimin Pei, Xiangchao Gan, Fen Wang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.722519

RNA-Sequencing in Resistant (QL3) and Susceptible (Theis) Sorghum Cultivars Inoculated With Johnsongrass Isolates of Colletotrichum sublineola
Cited by: 3
Author(s): Purushothaman Natarajan, Ezekiel Ahn, Umesh K. Reddy, Ramasamy Perumal, Louis K. Prom, Clint Magill
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-018-36771-9

Live imaging of leukocyte recruitment in a zebrafish model of chemical liver injury
Cited by: 15
Author(s): Michelina D. Stoddard, Cong Huang, Balázs Enyedi, Philipp Niethammer
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2020.00878

Comprehensive Transcriptome Profiling of Dairy Goat Mammary Gland Identifies Genes and Networks Crucial for Lactation and Fatty Acid Metabolism
Cited by: 5
Author(s): Cong Liu, Jiangjiang Zhu, Hengbo Shi, Jun Luo, Wangsheng Zhao, Huaiping Shi, Huifen Xu, Hui Wang, Juan J. Loor
Software Mentions: 1
Published: almost 6 years ago

10.15252/emmm.202012632

SLC6A20 transporter: a novel regulator of brain glycine homeostasis and NMDAR function
Cited by: 21
Author(s): Moo-Ho Bae, Junyeop Daniel Roh, You Joung Kim, Seong Soon Kim, Hye Min Han, Esther Yang, Hyojin Kang, Suho Lee, Jin Yong Kim, Ryeonghwa Kang, Hwajin Jung, Taesun Yoo, Hyosang Kim, Doyoun Kim, Heejeong Oh, Sungwook Han, Dayeon Kim, Jinju Han, Yong Chul Bae, Hyun Kim, Sunjoo Ahn, Andrew M. Chan, Daeyoup Lee, Jin Woo Kim, Eunjoon Kim
Software Mentions: 1
Published: over 5 years ago

10.1016/j.ebiom.2017.10.024

Restricted Presence of POU6F2 in Human Corneal Endothelial Cells Uncovered by Extension of the Promoter-level Expression Atlas
Cited by: 7
Author(s): Masahito Yoshihara, Shotaro Hara, Motokazu Tsujikawa, Satoshi Kawasaki, Yoshihide Hayashizaki, Masayoshi Itoh, Hideya Kawaji, Kohji Nishida
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-020-06852-z

Transcriptome analysis of genes related to gonad differentiation and development in Muscovy ducks
Cited by: 12
Author(s): Ding-Ping Bai, Yue Chen, Yuqiong Hu, Wenfeng He, Yu-Zhu Shi, Qin-Ming Fan, Ru-Tang Luo, Ang Li
Software Mentions: 1
Published: about 6 years ago

10.1093/database/bay075

RabGTD: a comprehensive database of rabbit genome and transcriptome
Cited by: 12
Author(s): Lu Zhou, Qingyu Xiao, Jie Bi, Zhen Wang, Yixue Li
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.17365

Chromosome-wide mechanisms to decouple gene expression from gene dose during sex-chromosome evolution
Cited by: 27
Author(s): B. Wheeler, Erika Anderson, Christian Frøkjær-Jensen, Qian Bian, Erik M. Jørgensen, Barbara J Meyer
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-019-38488-9

Fine-mapping sequence mutations with a major effect on oligosaccharide content in bovine milk
Cited by: 12
Author(s): Zhiqian Liu, Tingting Wang, J.E. Pryce, Iona M. MacLeod, Ben J. Hayes, Amanda J. Chamberlain, Christy Vander Jagt, Coralie M. Reich, Brett Mason, Simone Rochfort, Benjamin G. Cocks
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-39119-z

Sodium-activated potassium channels shape peripheral auditory function and activity of the primary auditory neurons in mice
Cited by: 29
Author(s): Daniël O. J. Reijntjes, Jeong Han Lee, Seojin Park, Nick Schubert, Marcel van Tuinen, Sarath Vijayakumar, Timothy A. Jones, Sherri M. Jones, Michael Anne Gratton, Xiaoming Xia, Ebenezer N. Yamoah, Sonja J. Pyott
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2018.08.188

Transcriptomic data on the role of PEST-domain-enriched tyrosine phosphatase in the regulation of antigen-mediated activation and antiallergic action of glucocorticoids in mast cells
Cited by: 1
Author(s): George K. Ainooson, Victor Gourain, Michael Stassen, Andrew C. B. Cato
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-019-39125-1

Death of female flower microsporocytes progresses independently of meiosis-like process and can be accelerated by specific transcripts in Asparagus officinalis
Cited by: 5
Author(s): Mayui Ide, Kiyoshi Masuda, Daisuke Tsugama, Kazuo Fujino
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2020.106563

MicroRNA expression data of pluripotent and somatic cells and identification of cell type-specific MicroRNAs in pigs
Cited by: 0
Author(s): Jong‐Nam Oh, Dong Hoon Son, Kwang‐Hwan Choi, Jae Yeon Hwang, Dong‐Kyung Lee, Seung‐Hun Kim, Mingyun Lee, Jinsol Jeong, Gyung Cheol Choe, Chang Kyu Lee
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-016-2960-3

The human olfactory transcriptome
Cited by: 86
Author(s): Tsviya Olender, Ifat Keydar, Jayant M. Pinto, Pavel Tatarskyy, Anna Alkelai, Ming-Shan Chien, Simon Fishilevich, Diego Restrepo, Hiroaki Matsunami, Yoav Gilad, Doron Lancet
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-015-2061-8

Comprehensive transcriptional landscape of aging mouse liver
Cited by: 91
Author(s): Ryan R. White, Brandon Milholland, Sheila L. MacRae, Mingyan Lin, Deyou Zheng, Jan Vijg
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-019-40501-0

RNA-seq of Isolated Chromaffin Cells Highlights the Role of Sex-Linked and Imprinted Genes in Adrenal Medulla Development
Cited by: 11
Author(s): Wing Man Chan, Masayuki Komada, Toshiaki Fukushima, E. Michelle Southard‐Smith, Colin Anderson, Matthew J. Wakefield
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2017.01.001

Dataset for distribution of SIDER2 elements in the Leishmania major genome and transcriptome
Cited by: 0
Author(s): José Marı́a Requena, Alberto Rastrojo, Esther Garde, Manuel Carlos López, M. Carmen Thomas, Begoña Aguado
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-019-41236-8

Complex regulatory network allows Myriophyllum aquaticum to thrive under high-concentration ammonia toxicity
Cited by: 7
Author(s): Rui Wang, Shengjun Xu, Hanjun Sun, Shugeng Feng, Cancan Jiang, Sining Zhou, Shimin Wu, Guoqiang Zhuang, Baodong Chen, Bai Zhang, Zhihui Bai
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-40747-8

miRNA profiling of urinary exosomes to assess the progression of acute kidney injury
Cited by: 57
Author(s): Hiroko Sonoda, Byung Rho Lee, Ki Hoon Park, Deepak Nihalani, Je‐Hyun Yoon, Masahiro Ikeda, Sang Ho Kwon
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2020.105432

RNA-seq data from whole rice grains of pigmented and non-pigmented Malaysian rice varieties
Cited by: 5
Author(s): Rabiatul-Adawiah Zainal-Abidin, Zamri Zainal, Zeti‐Azura Mohamed‐Hussein, Norliza Abu Bakar, Shahril Ab Razak, Sanimah Simoh, Yun Shin Sew
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-41616-0

Genome-wide Analysis Reveals DNA Methylation Alterations in Obesity Associated with High Risk of Colorectal Cancer
Cited by: 15
Author(s): Longlong Dong, Li Ma, Helena Glória, Hongmei Ren
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41692-2

An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome
Cited by: 24
Author(s): Paula Josefina Gómez-González, Núria Andreu, Jody Phelan, Paola Flórez de Sessions, Judith R. Glynn, Amelia C. Crampin, Susana Campino, Philip D. Butcher, Martin L. Hibberd, Taane G. Clark
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-41132-1

Transcriptomic Diversification of Granulosa Cells during Follicular Development in Chicken
Cited by: 24
Author(s): Guoqiang Zhu, Chao Fang, Jing Li, Chunheng Mo, Yajun Wang, Juan Li
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-019-0727-5

The gastrointestinal pathogen Campylobacter jejuni metabolizes sugars with potential help from commensal Bacteroides vulgatus
Cited by: 22
Author(s): Jolene M. Garber, Harald Nothaft, Ben Pluvinage, Martin Ståhl, Xiaoming Bian, Sara Porfírio, A Enríquez, James Butcher, Hua Huang, John Glushka, Eric Line, J.A. Gerlt, Parastoo Azadi, Alain Stintzi, A.B. Boraston, Christine M. Szymanski
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-020-01295-4

Identification and characterization of a new isoform of small GTPase RhoE
Cited by: 1
Author(s): Yiwu Dai, Weijia Luo, Xiaojing Yue, Wencai Ma, Jing Wang, Jiang Chang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-021-02458-7

Impact and mechanism of sulphur-deficiency on modern wheat farming nitrogen-related sustainability and gliadin content
Cited by: 23
Author(s): Zitong Yu, Maoyun She, Ting Zheng, Dean Diepeveen, Shahidul Islam, Yun Zhao, Yingquan Zhang, Guixiang Tang, Yujuan Zhang, Jingjuan Zhang, Christopher L. Blanchard, Wenqi Ma
Software Mentions: 1
Published: about 5 years ago

10.1038/s42003-020-0853-0

Circulating re-entrant waves promote maturation of hiPSC-derived cardiomyocytes in self-organized tissue ring
Cited by: 29
Author(s): Junjun Li, Lu Zhang, Lei Yu, Itsunari Minami, Shigeru Miyagawa, Marcel Hörning, Ji Dong, Jing Qiao, Xiaodong Qu, Ying Hua, Nozomu Fujimoto, Yuji Shiba, Yang Zhao, Fuchou Tang, Chen Yong, Yoshiki Sawa, Chao Tang, Li Liu
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-020-07138-0

Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghum
Cited by: 18
Author(s): Fuyou Fu, Gezahegn Girma, Tesfaye Mengiste
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-019-43413-1

Thallium(I) treatment induces nucleolar stress to stop protein synthesis and cell growth
Cited by: 18
Author(s): Yu‐Min Chou, Kai-Yin Lo
Software Mentions: 1
Published: over 7 years ago

10.1002/ctm2.265

Reiterative infusions of MSCs improve pediatric osteogenesis imperfecta eliciting a pro‐osteogenic paracrine response: TERCELOI clinical trial
Cited by: 21
Author(s): Arantza Infante, Blanca Gener, Miguél Vázquez, Nerea Olivares, Ana Arrieta, Gema Grau, Isabel Llano, Luís Madero, Ana M. Bueno, Belén Sagastizábal, Daniela Gerovska, Marcos J. Araúzo‐Bravo, Itziar Astigarraga, Clara I. Rodrı́guez
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-4784-9

Comparative transcriptome analysis of the invasive weed Mikania micrantha with its native congeners provides insights into genetic basis underlying successful invasion
Cited by: 15
Author(s): Wuxia Guo, Ying Liu, Wei Lun Ng, Pei Chun Liao, Bing Huang, Weixi Li, Chunmei Li, Xianggang Shi, Yelin Huang
Software Mentions: 1
Published: over 8 years ago

10.1002/ctm2.269

CD73 alleviates GSDMD‐mediated microglia pyroptosis in spinal cord injury through PI3K/AKT/Foxo1 signaling
Cited by: 90
Author(s): Shun Xu, Jin Wang, Junjie Zhong, Minghao Shao, Jianyuan Jiang, Jian Song, Wei Zhu, Fan Zhang, Haocheng Xu, Guangyu Xu, Yuxuan Zhang, Xiaosheng Ma, Feizhou Lyu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-44339-4

PCA-PAM50 improves consistency between breast cancer intrinsic and clinical subtyping reclassifying a subset of luminal A tumors as luminal B
Cited by: 32
Author(s): Praveen Kumar, Jianfang Liu, Jeffrey A. Hooke, Albert J. Kovatich, Leonid Kvecher, Craig D. Shriver, Hai Hu
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-15-802

miRNome traits analysis on endothelial lineage cells discloses biomarker potential circulating microRNAs which affect progenitor activities
Cited by: 29
Author(s): Ting‐Yu Chang, Tse‐Shun Huang, Hsei‐Wei Wang, Shing‐Jyh Chang, Hung-Hao Lo, Ya-Lin Chiu, Yen-Li Wang, Chung-Der Hsiao, Chin-Han Tsai, Che-Kai Chan, Ren-In You, Chun‐Hsien Wu, Tsung-Neng Tsai, Shu‐Meng Cheng, Cheng-Chung Cheng
Software Mentions: 1
Published: almost 12 years ago

10.1002/cti2.1165

Novel combination immunotherapy for pancreatic cancer: potent anti‐tumor effects with CD40 agonist and interleukin‐15 treatment
Cited by: 24
Author(s): Jonas R.M. Van Audenaerde, Elly Marcq, Bianca von Scheidt, Ashleigh S Davey, Amanda J. Oliver, Jorrit De Waele, Delphine Quatannens, Jinthe Van Loenhout, Patrick Pauwels, Geert Roeyen, Filip Lardon, Clare Y. Slaney, Marc Peeters, Michael H. Kershaw, Phillip K. Darcy, Elke Smits
Software Mentions: 1
Published: over 6 years ago

10.1186/s13148-019-0742-x

Epigenetic silencing of MEIS2 in prostate cancer recurrence
Cited by: 10
Author(s): Maibritt Nørgaard, Christa Haldrup, Marianne Bjerre, Søren Høyer, Benedicte Parm Ulhøi, Michael Borre, Karina D. Sørensen
Software Mentions: 1
Published: almost 7 years ago

10.3390/cells10071809

Morpho-Physiological and Transcriptome Changes in Tomato Anthers of Different Developmental Stages under Drought Stress
Cited by: 11
Author(s): Anthony Tumbeh Lamin-Samu, Mohamed Farghal, Muhammad Ali, Gang Lü
Software Mentions: 1
Published: about 5 years ago

10.3390/cells8121623

Vascular PPARβ/δ Promotes Tumor Angiogenesis and Progression
Cited by: 24
Author(s): Kay-Dietrich Wagner, Siyue Du, Luc Martin, Nathalie Leccia, Jean‐François Michiels, Nicole Wagner
Software Mentions: 1
Published: almost 7 years ago

10.3390/cells9061399

RNA-Sequencing-Based Transcriptomic Analysis Reveals a Role for Annexin-A1 in Classical and Influenza A Virus-Induced Autophagy
Cited by: 6
Author(s): Jianzhou Cui, Dhakshayini Morgan, Dao Han Cheng, Sok Lin Foo, Gracemary Yap, Patrick B. Ampomah, Satyam Arora, Karishma Sachaphibulkij, Balamurugan Periaswamy, Anna‐Marie Fairhurst, Paola Flórez de Sessions, Lina H.K. Lim
Software Mentions: 1
Published: over 6 years ago

Projects: pypi: HTSeq

Science Score: 65/100

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Papers Mentioning HTSeq 3,071