pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.1038/s41598-018-26670-4

Early transcriptional response of human ovarian and fallopian tube surface epithelial cells to norepinephrine
Cited by: 10
Author(s): Anxhela Gjyshi, Sweta Dash, Ling Cen, Chia-Ho Cheng, Chaomei Zhang, Sean Yoder, Jamie K. Teer, Guillermo N. Armaiz-Peña, Alvaro N.A. Monteiro
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.00249

B Cells as Prognostic Biomarker After Surgery for Colorectal Liver Metastases
Cited by: 5
Author(s): Joost Hof, Lydia Visser, Diederik J. Höppener, Pieter M. H. Nierop, Miente Martijn Terpstra, Annette Gouw, Dirk J. Grünhagen, Cornelis Verhoef, Rolf H. Sijmons, Koert P. de Jong, Klaas Kok
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.30038

Regulation of rice root development by a retrotransposon acting as a microRNA sponge
Cited by: 55
Author(s): Jungnam Cho, Jerzy Paszkowski
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-018-27843-x

Loss of Glis3 causes dysregulation of retrotransposon silencing and germ cell demise in fetal mouse testis
Cited by: 3
Author(s): Erica Ungewitter, Emmi Rotgers, Hong Soon Kang, Kristin Lichti-Kaiser, Leping Li, Sara A. Grimm, Anton M. Jetten, Hisayuki Yao
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-27940-x

Transcriptome analysis of two contrasting rice cultivars during alkaline stress
Cited by: 34
Author(s): Ning Li, Hualong Liu, Jian Sun, Hongliang Zheng, Jingguo Wang, Liuqing Yang, Hongwei Zhao, Detang Zou
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-28158-7

Recognition of candidate transcription factors related to bilberry fruit ripening by de novo transcriptome and qRT-PCR analyses
Cited by: 15
Author(s): Nga Nguyen, Marko Suokas, Katja Karppinen, Jaana Vuosku, Laura Jaakola, Hely Häggman
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-29093-3

Gene expression profiles of germ-free and conventional piglets from the same litter
Cited by: 19
Author(s): Jing Sun, Huan Zhong, Lei Du, Xiaolei Li, Yuchun Ding, Haoran Cao, Zuohua Liu, Liangpeng Ge
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2020.615472

Multi-Omics Analysis of Brain Metastasis Outcomes Following Craniotomy
Cited by: 28
Author(s): Jing Su, Qianqian Song, Shadi Qasem, Stacey S. O’Neill, Jingyun Lee, Cristina M. Furdui, Boris Pasche, Linda J. Metheny-Barlow, Adrianna Henson Masters, Hui-Wen Lo, Fei Xing, Kounosuke Watabe, Lance D. Miller, Stephen B. Tatter, Adrian W. Laxton, Christopher T. Whitlow, Michael D. Chan, M. Soike, Jimmy Ruiz
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.00894

Transcriptional Responses of Candida albicans to Antimicrobial Peptide MAF-1A
Cited by: 31
Author(s): Tao Wang, Jiangfan Xiu, Yingchun Zhang, Jianwei Wu, Xiaolin Ma, Yu Wang, Guo Guo, Xiaoli Shang
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-30621-4

TNFR2 ligation in human T regulatory cells enhances IL2-induced cell proliferation through the non-canonical NF-κB pathway
Cited by: 31
Author(s): Jun Wang, Ricardo C. Ferreira, Wenyu Lü, Samatha Farrow, Kate Downes, Lutz Jermutus, Ralph Minter, Rafia S. Al‐Lamki, Jordan S. Pober, John R. Bradley
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-30466-x

A cancer vaccine approach for personalized treatment of Lynch Syndrome
Cited by: 15
Author(s): Snigdha Majumder, Rakshit Shah, Jisha Elias, Malini Manoharan, Priyanka Shah, Anjali Kumari, Papia Chakraborty, Vasumathi Kode, Yogesh Mistry, Karunakaran Coral, Bharti Mittal, Sakthivel Murugan Sm, Lakshmi Mahadevan, Ravi Gupta, Amitabha Chaudhuri, Arati Khanna-Gupta
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-30882-z

Expression profiling in a mammalian host reveals the strong induction of genes encoding LysM domain-containing proteins in Enterococcus faecium
Cited by: 8
Author(s): Margherita Cacaci, Caroline Giraud, L Léger, Riccardo Torelli, Cécilia Martini, Brunella Posteraro, Valentina Palmieri, Maurizio Sanguinetti, Francesca Bugli, Axel Hartke
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-30602-7

Cigarette smoke exposure decreases CFLAR expression in the bronchial epithelium, augmenting susceptibility for lung epithelial cell death and DAMP release
Cited by: 30
Author(s): Alen Faiz, Irene H. Heijink, Cornelis J Vermeulen, Victor Guryev, Maarten van den Berge, Martijn C. Nawijn, Simon D. Pouwels
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-30754-6

An Adult Zebrafish Model Reveals that Mucormycosis Induces Apoptosis of Infected Macrophages
Cited by: 29
Author(s): Azucena López-Muñoz, Francisco E. Nicolás, Diana García‐Moreno, Ana B. Pérez-Oliva, María Isabel Navarro-Mendoza, Miguel Ángel Hernández‐Oñate, Alfredo Herrera-Estrella, Santiago Torres-Martı́nez, Rosa M. Ruiz‐Vázquez, Victoriano Mulero
Software Mentions: 2
Published: about 6 years ago

10.3389/fonc.2021.608816

Inhibition of the mRNA-Binding Protein IGF2BP1 Suppresses Proliferation and Sensitizes Neuroblastoma Cells to Chemotherapeutic Agents
Cited by: 8
Author(s): Jason M. Biegel, Mayura Dhamdhere, Shuang Gao, Chethana P. Gowda, Yuka Imamura Kawasawa, Vladimir S. Spiegelman
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-31420-7

Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses
Cited by: 16
Author(s): Matthew Chung, Laura Teigen, Hong Liu, Silvia Libro, Amol C. Shetty, Nikhil Kumar, Xüna Zhao, Robin E. Bromley, Luke J. Tallon, Lisa Sadzewicz, Claire M. Fraser, David A. Rasko, Scott G. Filler, Jeremy M. Foster, Michelle L. Michalski, Vincent M. Bruno, Julie C. Dunning Hotopp
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2017.00308

Serpentinization-Influenced Groundwater Harbors Extremely Low Diversity Microbial Communities Adapted to High pH
Cited by: 56
Author(s): Katrina I. Twing, William J. Brazelton, M. D. Kubo, Alex Hyer, D. Cardace, Tori M. Hoehler, T. M. McCollom, M. O. Schrenk
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-32266-9

Transcriptional profiling of Zygosaccharomyces bailii early response to acetic acid or copper stress mediated by ZbHaa1
Cited by: 13
Author(s): Miguel Antunes, Margarida Palma, Isabel Sá‐Correia
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-32519-7

Comparative in depth RNA sequencing of P. tricornutum’s morphotypes reveals specific features of the oval morphotype
Cited by: 16
Author(s): Clément Ovide, Marie‐Christine Kiefer‐Meyer, Caroline Bérard, Nicolas Vergne, Thierry Lecroq, Carole Plasson, Carole Burel, Sophie Bernard, Azeddine Driouich, Patrice Lerouge, Isabelle Tournier, Hélène Dauchel, Muriel Bardor
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-32818-z

Meta-analysis of data from spaceflight transcriptome experiments does not support the idea of a common bacterial “spaceflight response”
Cited by: 15
Author(s): Michael D. Morrison, Wayne L. Nicholson
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-32400-7

Differentiation enhances Zika virus infection of neuronal brain cells
Cited by: 21
Author(s): Carolyn Martin, Tony Li, Jérôme Bouquet, Jessica Streithorst, Guixia Yu, Aditi Paranjpe, Charles Y. Chiu
Software Mentions: 2
Published: about 6 years ago

10.3389/fphys.2020.582505

A Transcriptomic and Proteomic Analysis of the Diaphorina citri Salivary Glands Reveals Genes Responding to Candidatus Liberibacter asiaticus
Cited by: 7
Author(s): Xiaoqiang Liu, Hong‐Bo Jiang, Tianyuan Liu, Li Yang, Jiaqi Fan, Ying Xiong, Tian‐Xing Jing, Binghai Lou, Wei Dou, Jinjun Wang
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2020.616792

Copper Ions Facilitate the Conjugative Transfer of SXT/R391 Integrative and Conjugative Element Across Bacterial Genera
Cited by: 9
Author(s): Zhou Song, Lei Zuo, Cui Li, Yiming Tian, Hongning Wang
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes7110097

Identification of Novel Equine (Equus caballus) Tendon Markers Using RNA Sequencing
Cited by: 7
Author(s): J. M. Kuemmerle, Felix Theiss, Michał Okoniewski, Fabienne A. Weber, Sonja Hemmi, Ali Mirsaidi, Peter J. Richards, Paolo Cinelli
Software Mentions: 1
Published: about 8 years ago

10.3389/fphys.2018.01653

Transcriptomic Responses to Different Cry1Ac Selection Stresses in Helicoverpa armigera
Cited by: 21
Author(s): Jizhen Wei, Shuo Yang, Lin Chen, Xiaoguang Liu, Mingliang Du, Shiheng An, Gemei Liang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fneur.2019.00036

LncRNA Expression Profiling of Ischemic Stroke During the Transition From the Acute to Subacute Stage
Cited by: 22
Author(s): Wenjiao Zhu, Lili Tian, Xuanye Yue, Jingyi Liu, Ying Fu, Yaping Yan
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.61539

Ral GTPases promote breast cancer metastasis by controlling biogenesis and organ targeting of exosomes
Cited by: 61
Author(s): Shima Ghoroghi, Benjamin Mary, Annabel Larnicol, Nandini Asokan, Albrecht Klein, Naël Osmani, Ignacio Busnelli, François Delalande, Nicodème Paul, Sébastien Halary, Frédéric Gros, Laëtitia Fouillen, Anne‐Marie Haeberlé, Cathy Royer, Coralie Spiegelhalter, Gwennan André-Grégoire, Vincent Mittelheisser, Alexandre Detappe, Kendelle J. Murphy, Paul Timpson, Raphaël Carapito, Marcel Blot‐Chabaud, Julie Gavard, Nicolas Vitale, Olivier Lefèbvre, Jacky G. Goetz, Vincent Hyenne
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-019-43413-1

Thallium(I) treatment induces nucleolar stress to stop protein synthesis and cell growth
Cited by: 18
Author(s): Yu‐Min Chou, Kai-Yin Lo
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.598478

Genetic and Functional Diversity of Pseudomonas aeruginosa in Patients With Chronic Obstructive Pulmonary Disease
Cited by: 7
Author(s): Kelei Zhao, Ting Huang, Jiafu Lin, Chaochao Yan, Lianming Du, Tao Song, Jing Li, Yidong Guo, Yiwen Chu, Junfeng Deng, Xinrong Wang, Chaolan Liu, Yingshun Zhou
Software Mentions: 1
Published: about 4 years ago

10.3389/fphys.2019.00302

Transcriptome Profiling of the Whitefly Bemisia tabaci MED in Response to Single Infection of Tomato yellow leaf curl virus, Tomato chlorosis virus, and Their Co-infection
Cited by: 27
Author(s): Tian-Bo Ding, Jie Li, Er-Hu Chen, Jinzhi Niu, Dong Chu
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.27155

IGF2 mRNA binding protein-2 is a tumor promoter that drives cancer proliferation through its client mRNAs IGF2 and HMGA1
Cited by: 73
Author(s): Ning Dai, Fei Ji, Jason Wright, Liliana Minichiello, Ruslan I. Sadreyev, Joseph Avruch
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2017.00274

A Small Regulatory RNA Contributes to the Preferential Colonization of Escherichia coli O157:H7 in the Large Intestine in Response to a Low DNA Concentration
Cited by: 13
Author(s): Richou Han, Letian Xu, Ting Wang, Bin Liu, Lei Wang
Software Mentions: 1
Published: over 7 years ago

10.3389/fphar.2021.719842

L-Theanine Alleviates IMQ-Induced Psoriasis Like Skin Inflammation by Downregulating the Production of IL-23 and Chemokines
Cited by: 4
Author(s): Yunxiang Xu, Jiang Zhu, Jingyi Hu, Ziqi Zou, Yuhai Zhao, Lihua Lai, Ping Xu, Yinjing Song, Hao Cheng
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.02635

Enhanced Expression of Pullulanase in Bacillus subtilis by New Strong Promoters Mined From Transcriptome Data, Both Alone and in Combination
Cited by: 20
Author(s): Fanqiang Meng, Xiaoyu Zhu, Ting Nie, Feng Lü, Xiaomei Bie, Yingjian Lu, Frances Trouth, Zhaoxin Lu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-44339-4

PCA-PAM50 improves consistency between breast cancer intrinsic and clinical subtyping reclassifying a subset of luminal A tumors as luminal B
Cited by: 32
Author(s): Praveen Kumar, Jianfang Liu, Jeffrey A. Hooke, Albert J. Kovatich, Leonid Kvecher, Craig D. Shriver, Hai Hu
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01532

Antimicrobial Peptide Cec4 Eradicates the Bacteria of Clinical Carbapenem-Resistant Acinetobacter baumannii Biofilm
Cited by: 29
Author(s): Weiwei Liu, Zhaoying Wu, Chengju Mao, Guo Guo, Zhu Zeng, Ying Fei, Shouhong Wan, Jian Peng, Jianwei Wu
Software Mentions: 1
Published: over 4 years ago

10.3389/fphar.2018.00312

Tnfrsf12a-Mediated Atherosclerosis Signaling and Inflammatory Response as a Common Protection Mechanism of Shuxuening Injection Against Both Myocardial and Cerebral Ischemia-Reperfusion Injuries
Cited by: 26
Author(s): Ming Lyu, Ying Cui, Ting Zhao, Zhaochen Ning, Jie Ren, Xingpiao Jin, Guanwei Fan, Yan Zhu
Software Mentions: 1
Published: over 6 years ago

10.3389/fphar.2020.01183

Genetic Profiles Affect the Biological Effects of Serine on Gastric Cancer Cells
Cited by: 3
Author(s): Jun Li, Hongzhang Xue, Zhen Xiang, Shuzheng Song, Ranlin Yan, Jun Ji, Zhenggang Zhu, Chaochun Wei, Yingyan Yu
Software Mentions: 1
Published: over 4 years ago

10.3389/fnmol.2017.00433

Sphingolipid Metabolism Is Dysregulated at Transcriptomic and Metabolic Levels in the Spinal Cord of an Animal Model of Amyotrophic Lateral Sclerosis
Cited by: 47
Author(s): Alexandre Cruz Henriques, Vincent Croixmarie, Alexandra Bouscary, Althéa Mosbach, Céline Keime, Claire Boursier-Neyret, Bernard Walter, Michael Spedding, Jean‐Philippe Loeffler
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.682205

MgrB Inactivation Confers Trimethoprim Resistance in Escherichia coli
Cited by: 2
Author(s): Hongmei Shi, Ting Li, Jintian Xu, Jifang Yu, Shimei Yang, Xian-En Zhang, Sheng-Ce Tao, Jing Gu, Jiao-Yu Deng
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-20373-6

Identification of molecular pathways and candidate genes associated with cocks’ comb size trait by genome-wide transcriptome analysis
Cited by: 6
Author(s): Yifan Liu, Yan Tu, Ming Zhang, Gaige Ji, Kun Wang, Yanju Shan, Xiaojun Ju, Di Zhang, Shu JingTing, Jianmin Zou
Software Mentions: 1
Published: almost 7 years ago

10.3390/genes11060629

Knockdown of a Novel Gene OsTBP2.2 Increases Sensitivity to Drought Stress in Rice
Cited by: 5
Author(s): Yong Zhang, Limei Zhao, Hong Mei Xiao, Jinkiat Chew, Jinxia Xiang, Kaiyun Qian, Xing Fan
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.62678

Cardiovascular disease risk factors induce mesenchymal features and senescence in mouse cardiac endothelial cells
Cited by: 11
Author(s): Karthik Amudhala Hemanthakumar, Shentong Fang, Andrey Anisimov, Mikko I. Mäyränpää, Eero Mervaala, Riikka Kivelä
Software Mentions: 1
Published: over 3 years ago

10.3390/genes10050340

Global Regulator PhoP is Necessary for Motility, Biofilm Formation, Exoenzyme Production, and Virulence of Xanthomonas citri Subsp. citri on Citrus Plants
Cited by: 10
Author(s): Wei Chu-dan, Tian Ding, Changqing Chang, Chengpeng Yu, Xing-wei Li, Qiongguang Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01905

N4-Cytosine DNA Methylation Is Involved in the Maintenance of Genomic Stability in Deinococcus radiodurans
Cited by: 20
Author(s): Shengjie Li, Jianling Cai, Haijun Lu, Shuyu Mao, Shang Dai, Jing Hu, Liangyan Wang, Xiaoting Hua, Hong Xu, Bing Teng, Ye Zhao, Yuejin Hua
Software Mentions: 1
Published: over 5 years ago

10.1016/j.gpb.2018.12.012

Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated Genes in Saccharina japonica
Cited by: 6
Author(s): Changliang Shan, Guoliang Wang, Tao Liu, Xumin Wang, Cui Liu, Yishuai Jin, Hongxin Yin, Xin Xu, Jun Yu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-23116-9

Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea
Cited by: 54
Author(s): Mayank Kaashyap, Rebecca Ford, Himabindu Kudapa, Mukesh Jain, David Edwards, Rajeev K. Varshney, Nitin Mantri
Software Mentions: 1
Published: over 6 years ago

10.7150/ijms.51126

The effect of CCL5 on the immune cells infiltration and the prognosis of patients with kidney renal clear cell carcinoma
Cited by: 8
Author(s): Shengjie Bai, Yinying Wu, Yanli Yan, Haojing Kang, Jiangzhou Zhang, Wen Ma, Ying Gao, Baojun Hui, Rong Li, Xiaozhi Zhang, Juan Ren
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2018.03222

Diallyl Disulfide From Garlic Oil Inhibits Pseudomonas aeruginosa Quorum Sensing Systems and Corresponding Virulence Factors
Cited by: 25
Author(s): Wen-Ru Li, Yun‐Bao Ma, Xiao‐Bao Xie, Qingshan Shi, Wen Xu, Tairen Sun, Hong Peng
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41368-020-0085-7

Berberine mediates root remodeling in an immature tooth with apical periodontitis by regulating stem cells from apical papilla differentiation
Cited by: 16
Author(s): Yujia Cui, Jing Xie, Yujie Fu, Chuwen Li, Liwei Zheng, Dingming Huang, Changchun Zhou, Jing Sun, Xuedong Zhou
Software Mentions: 1
Published: over 4 years ago

10.1186/s13045-020-00857-7

RETRACTED ARTICLE: HNF4A-AS1/hnRNPU/CTCF axis as a therapeutic target for aerobic glycolysis and neuroblastoma progression
Cited by: 42
Author(s): Huajie Song, Dan Li, Xiaojing Wang, Erhu Fang, Feng Yang, Anpei Hu, Jianqun Wang, Yanhua Guo, Yang Liu, Hongjun Li, Yajun Chen, Kai Huang, Liduan Zheng, Qiangsong Tong
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.56935

Specific labeling of synaptic schwann cells reveals unique cellular and molecular features
Cited by: 43
Author(s): Ryan Castro, Thomas Taetzsch, Sydney K. Vaughan, Kerilyn N. Godbe, John C. Chappell, Robert E. Settlage, Gregorio Valdez
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2019.03157

Genomic Insights Into Sugar Adaptation in an Extremophile Yeast Zygosaccharomyces rouxii
Cited by: 13
Author(s): Hong Guo, Yue Qiu, Jianping Wei, Chen Niu, Yuxiang Zhang, Yahong Yuan, Tian‐Li Yue
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-10475-y

Comparative transcriptome analysis of the Pacific White Shrimp (Litopenaeus vannamei) muscle reveals the molecular basis of residual feed intake
Cited by: 17
Author(s): Peng Dai, Sheng Luan, Xia Lu, Kun Luo, Jie Kong
Software Mentions: 1
Published: about 7 years ago

10.3389/fped.2021.660482

Neuropilin-2 Is Associated With Increased Hepatoblastoma Cell Viability and Motility
Cited by: 2
Author(s): Katja Eloranta, Ruth Nousiainen, Stefano Cairo, Mikko P. Pakarinen, David B. Wilson, Marjut Pihlajoki, Markku Heikinheimo
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph18168615

Transcriptional Analysis of Microcystis aeruginosa Co-Cultured with Algicidal Bacteria Brevibacillus laterosporus
Cited by: 6
Author(s): Yulei Zhang, D. Chen, Ning Zhang, Feng Liu, Xiaoxia Luo, Qianru Li, Changling Li, Xinyu Huang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-25483-9

Identification of target genes regulated by the Drosophila histone methyltransferase Eggless reveals a role of Decapentaplegic in apoptotic signaling
Cited by: 6
Author(s): Igojo Kang, Yourim Choi, Sueun Jung, Jae Yun Lim, Dong Hoon Lee, Sumeet Gupta, Woongjoon Moon, Chanseok Shin
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.00251

Chryseobacterium lacus sp. nov. Isolated From the Surface Water of Two Lakes With Light-Induced Carotenoid Production
Cited by: 9
Author(s): Jing Zhang, Canzhu Gao, Xin Yu, He-Yuan Lun, Zong‐Jun Du
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11030308

Transcriptomic Analysis of the Chicken MDA5 Response Genes
Cited by: 12
Author(s): Shiman Yu, Haiying Mao, Meilin Jin, Xian Lin
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11020134

Robust Cytonuclear Coordination of Transcription in Nascent Arabidopsis thaliana Autopolyploids
Cited by: 16
Author(s): Jeremy E. Coate, W Max Schreyer, David Kum, Jeff J. Doyle
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes11020178

Transcriptomics Reveal Altered Metabolic and Signaling Pathways in Podocytes Exposed to C16 Ceramide-Enriched Lipoproteins
Cited by: 5
Author(s): Samar M. Hammad, Waleed O. Twal, Ehtesham Arif, Andrea J. Semler, Richard L. Klein, Deepak Nihalani
Software Mentions: 1
Published: almost 5 years ago

10.3389/fmicb.2020.01390

Mechanisms for Rapid Evolution of Carbapenem Resistance in a Clinical Isolate of Pseudomonas aeruginosa
Cited by: 15
Author(s): Congjuan Xu, Dan Wang, Xinxin Zhang, Huimin Liu, Guangbo Zhu, Tong Wang, Zhihui Cheng, Weihui Wu, Fang Bai, Yongxin Jin
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.120.400990

Genetic Variation and Potential for Resistance Development to the tTA Overexpression Lethal System in Insects
Cited by: 16
Author(s): Katherine Elizabeth Knudsen, William Reid, Traci M Barbour, Laci M Bowes, Juliana Duncan, Elaina Philpott, Samantha Potter, Maxwell J. Scott
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-27565-0

RNA-Seq reveals large quantitative differences between the transcriptomes of outbreak and non-outbreak locusts
Cited by: 9
Author(s): Mohammed Bakkali, Rubén Martín-Blázquez
Software Mentions: 1
Published: over 6 years ago

10.1038/s41388-019-1116-8

Systematic characterization of chromatin modifying enzymes identifies KDM3B as a critical regulator in castration resistant prostate cancer
Cited by: 23
Author(s): Hilal Saraç, Tunç Morova, Elisabete Pires, James McCullagh, Anıl Kaplan, Ahmet Cingöz, Tugba Bagcı-Önder, Tamer T. Önder, Akane Kawamura, Nathan A. Lack
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes11020167

Testing Differential Gene Networks under Nonparanormal Graphical Models with False Discovery Rate Control
Cited by: 3
Author(s): Qingyang Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-017-08515-8

Cellular toxicity pathways of inorganic and methyl mercury in the green microalga Chlamydomonas reinhardtii
Cited by: 52
Author(s): Rébecca Beauvais-Flück, Vera I. Slaveykova, Claudia Cosio
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-28239-7

ETV1 activates a rapid conduction transcriptional program in rodent and human cardiomyocytes
Cited by: 23
Author(s): Akshay Shekhar, Xianming Lin, Bin Lin, Fang-Yu Liu, Jie Zhang, Alireza Khodadadi‐Jamayran, Aristotelis Tsirigos, Lei Bu, Glenn I. Fishman, David Park
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.672661

pH Changes Have a Profound Effect on Gene Expression, Hydrolytic Enzyme Production, and Dimorphism in Saccharomycopsis fibuligera
Cited by: 1
Author(s): Mohamed El-Agamy Farh, Najib Abdellaoui, Jeong‐Ah Seo
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-018-28485-9

Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome
Cited by: 88
Author(s): Helena Sork, Giulia Corso, Kaarel Krjutškov, Henrik J. Johansson, Joel Z. Nordin, Oscar P. B. Wiklander, Yi Xin Fiona Lee, Jakub Orzechowski Westholm, Janne Lehtiö, Matthew Wood, Imre Mäger, Samir El Andaloussi
Software Mentions: 1
Published: over 6 years ago

10.3389/fonc.2015.00191

Disseminated Medulloblastoma in a Child with Germline BRCA2 6174delT Mutation and without Fanconi Anemia
Cited by: 16
Author(s): Jingying Xu, Ashley Margol, Anju Shukla, Xiuhai Ren, Jonathan L. Finlay, Mark D. Krieger, Floyd H. Gilles, Fergus J. Couch, Meraj Aziz, Eric T. Fung, Shahab Asgharzadeh, Michael T. Barrett, Anat Erdreich‐Epstein
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2018.01319

Isolation of Low-Abundant Bacteroidales in the Human Intestine and the Analysis of Their Differential Utilization Based on Plant-Derived Polysaccharides
Cited by: 13
Author(s): Huizi Tan, Jianxin Zhao, Hao Zhang, Qixiao Zhai
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10120958

Transcriptome Sequencing Reveals the Traits of Spermatogenesis and Testicular Development in Large Yellow Croaker (Larimichthys crocea)
Cited by: 15
Author(s): Shengyu Luo, Xinming Gao, Jie Ding, Cheng Liu, Chang Du, Cong-Cong Hou, Junquan Zhu, Bao Liu
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.00942

The Hybrid Strategy of Thermoactinospora rubra YIM 77501T for Utilizing Cellulose as a Carbon Source at Different Temperatures
Cited by: 7
Author(s): Yi-Rui Yin, Zhen Meng, Qingwen Hu, Jiuran Zhao, Wen-Dong Xian, Linhua Li, Wei Hu, Feng Zhang, En‐Min Zhou, Xiao‐Yang Zhi, Wenjun Li
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.02344

Transcriptome Profiling Reveals Differential Effect of Interleukin-17A Upon Influenza Virus Infection in Human Cells
Cited by: 11
Author(s): Jing Li, Kun Zhang, Wenhui Fan, Shuang Zhang, Yun Li, Jinyan Gu, Jiyong Zhou, Wenjun Liu
Software Mentions: 1
Published: about 5 years ago

10.3390/genes10080617

Global Investigation of Cytochrome P450 Genes in the Chicken Genome
Cited by: 6
Author(s): Jingyao Ren, Liyu Yang, Quan‐Lin Li, Qinghe Zhang, Chang Sun, Xiaojun Liu, Ning Yang
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.119.400884

Genome-Wide Association Study for Maize Leaf Cuticular Conductance Identifies Candidate Genes Involved in the Regulation of Cuticle Development
Cited by: 10
Author(s): Lin Meng, Susanne Matschi, Miguel Vasquez, James Chamness, Nicholas Kaczmar, Matheus Baseggio, Michael G. Miller, Ethan L. Stewart, Pengfei Qiao, Michael J. Scanlon, Isabel Molina, Laurie G. Smith, Michael A. Gore
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-30972-y

Mutations causing low level antibiotic resistance ensure bacterial survival in antibiotic-treated hosts
Cited by: 55
Author(s): Jakob Frimodt-Møller, Elio Rossi, Janus Anders Juul Haagensen, Falcone Marilena, Søren Molin, Helle Krogh Johansen
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.19887

Neuroendocrine modulation sustains the C. elegans forward motor state
Cited by: 42
Author(s): Manho Lim, Jyothsna Chitturi, Valeriya Laskova, Jun Meng, Daniel Findeis, Anne Wiekenberg, Ben Mulcahy, Linjiao Luo, Yan Li, Yangning Lu, Wesley Hung, Yixin Qu, Chi-Yip Ho, Douglas Holmyard, Ni Ji, Rebecca McWhirter, Aravinthan D. T. Samuel, David M. Miller, Ralf Schnabel, John A. Calarco, Mei Zhen
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-018-30821-y

Molecular and physiological responses in roots of two full-sib poplars uncover mechanisms that contribute to differences in partial submergence tolerance
Cited by: 14
Author(s): Yanjie Peng, Zhixiang Zhou, Zhe Zhang, Xiaoli Yu, XinYe Zhang, Kun Du
Software Mentions: 1
Published: about 6 years ago

10.3390/genes10080605

Transcriptome Analysis of Acid-Responsive Genes and Pathways Involved in Polyamine Regulation in Iron Walnut
Cited by: 4
Author(s): Xiaomei Luo, Juncheng Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00935

Transcriptome Analysis Uncovers a Link Between Copper Metabolism, and Both Fungal Fitness and Antifungal Sensitivity in the Opportunistic Yeast Candida albicans
Cited by: 17
Author(s): Inès Khemiri, Faïza Tebbji, Adnane Sellam
Software Mentions: 1
Published: over 4 years ago

10.3390/genes9010029

The Landscape of Small Non-Coding RNAs in Triple-Negative Breast Cancer
Cited by: 19
Author(s): Yan Guo, Hui Yu, Jing Wang, Quanhu Sheng, Shilin Zhao, Zhao Yan, Brian D. Lehmann
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2017.01525

Control of Virulence Gene Expression by the Master Regulator, CfaD, in the Prototypical Enterotoxigenic Escherichia coli Strain, H10407
Cited by: 6
Author(s): Carla Hodson, Jiyeon Yang, Dianna M Hocking, Kristy Azzopardi, Qianyu Chen, Jessica K. Holien, Michael W. Parker, Marija Tauschek, Roy M. Robins-Browne
Software Mentions: 1
Published: over 7 years ago

10.1186/s13059-014-0523-y

An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era
Cited by: 129
Author(s): Zhenqiang Su, Hong Fang, Huixiao Hong, Leming Shi, Wenqian Zhang, Wenwei Zhang, Yanyan Zhang, Zirui Dong, Lee Lancashire, Marina Bessarabova, Xi Yang, Baitang Ning, Binsheng Gong, Joe Meehan, Joshua Xu, Weigong Ge, Roger Perkins, Matthias Fischer, Weida Tong
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2021.653354

Transcriptome Analysis Revealed Overlapping and Special Regulatory Roles of RpoN1 and RpoN2 in Motility, Virulence, and Growth of Xanthomonas oryzae pv. oryzae
Cited by: 3
Author(s): Chao Yu, Doan-Phuong Nguyen, Fenghuan Yang, Jianbin Shi, Yifei Wei, Fang Tian, Xing‐Ming Zhao, Huamin Chen
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2016.01978

Enzyme-Mediated Quenching of the Pseudomonas Quinolone Signal (PQS) Promotes Biofilm Formation of Pseudomonas aeruginosa by Increasing Iron Availability
Cited by: 22
Author(s): Beatrix Tettmann, Christine Niewerth, Frank Kirschhöfer, Anke Neidig, Andreas Dötsch, Gerald Brenner–Weiß, Susanne Fetzner, J. Marc Overhage
Software Mentions: 1
Published: almost 8 years ago

10.3389/fonc.2021.731547

ASF1B Promotes Oncogenesis in Lung Adenocarcinoma and Other Cancer Types
Cited by: 14
Author(s): Wencheng Zhang, Zhouyong Gao, Mingxiu Guan, Ning Liu, Fengyan Meng, Guangshun Wang
Software Mentions: 1
Published: about 3 years ago

10.3390/genes8100275

Identification and Characterization of TALE Homeobox Genes in the Endangered Fern Vandenboschia speciosa
Cited by: 11
Author(s): Mercedes Ruíz-Estévez, Mohammed Bakkali, Rubén Martín-Blázquez, Manuel A. Garrido-Ramos
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2018.02353

Diurnal Changes in Active Carbon and Nitrogen Pathways Along the Temperature Gradient in Porcelana Hot Spring Microbial Mat
Cited by: 25
Author(s): María E. Alcamán-Arias, Carlos Pedrós-Alió, Javier Tamames, Camila Fernández, Danilo Pérez‐Pantoja, Mónica Vásquez, Beatriz Dı́ez
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-33838-5

Neurogenin3 phosphorylation controls reprogramming efficiency of pancreatic ductal organoids into endocrine cells
Cited by: 16
Author(s): Roberta Azzarelli, Steffen Rulands, Sonia Nestorowa, John Dwyfor Davies, Sara Campinoti, Sébastien Gillotin, Paola Bonfanti, Berthold Göttgens, Meritxell Huch, Benjamin D. Simons, Anna Philpott
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2020.00104

Heterozygous p53-R280T Mutation Enhances the Oncogenicity of NPC Cells Through Activating PI3K-Akt Signaling Pathway
Cited by: 8
Author(s): Zhenqi Qin, Qiguang Li, Hong Yi, Shanshan Lu, Wei Huang, Zhuoxian Rong, Yurong Tang, Zhi‐Qiang Xiao
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.26287

Steroid hormone induction of temporal gene expression in Drosophila brain neuroblasts generates neuronal and glial diversity
Cited by: 113
Author(s): Mubarak Hussain Syed, Brandon Mark, Chris Q. Doe
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.00825

Tachyplesin Causes Membrane Instability That Kills Multidrug-Resistant Bacteria by Inhibiting the 3-Ketoacyl Carrier Protein Reductase FabG
Cited by: 23
Author(s): Cunbao Liu, Jialong Qi, Bin Shu, Yanbing Ma
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.01179

Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
Cited by: 323
Author(s): Joshua G. Dunn, Catherine K. Foo, Nicolette G Belletier, Elizabeth R. Gavis, Jonathan S. Weissman
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.34961

Variations in HLA-B cell surface expression, half-life and extracellular antigen receptivity
Cited by: 36
Author(s): Brogan Yarzabek, Anita Zaitouna, Edwin Olson, Gayathri N. Silva, Jie Geng, Aviva Geretz, Rasmi Thomas, Sujatha Krishnakumar, Daniel Ramón, Malini Raghavan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12711-014-0074-4

Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions
Cited by: 106
Author(s): Kathryn E. Kemper, Coralie M. Reich, P.J. Bowman, Christy J. Vander Jagt, Amanda J. Chamberlain, Brett Mason, Ben J. Hayes, Michael E. Goddard
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.01832

BcRPD3-Mediated Histone Deacetylation Is Involved in Growth and Pathogenicity of Botrytis cinerea
Cited by: 10
Author(s): Ning Zhang, Zhenzhou Yang, Zhonghua Zhang, Wenxing Liang
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2018.00238

The Small RNA ErsA of Pseudomonas aeruginosa Contributes to Biofilm Development and Motility through Post-transcriptional Modulation of AmrZ
Cited by: 26
Author(s): Falcone Marilena, Silvia Ferrara, Elio Rossi, Helle Krogh Johansen, Søren Molin, Giovanni Bertoni
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2019.02775

Small RNA ArcZ Regulates Oxidative Stress Response Genes and Regulons in Erwinia amylovora
Cited by: 4
Author(s): Jeffrey K. Schachterle, Daphne Onsay, George W. Sundin
Software Mentions: 1
Published: almost 5 years ago

Projects: pypi: HTSeq

Papers Mentioning HTSeq 3,071