pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.1038/s41438-018-0035-0

Investigation of benzylisoquinoline alkaloid biosynthetic pathway and its transcriptional regulation in lotus
Cited by: 39
Author(s): Ximing Deng, Li Zhao, Ting Fang, Yan Xiong, Collins Ogutu, Dong Yang, Sornkanok Vimolmangkang, Yanling Liu, Yuepeng Han
Software Mentions: 2
Published: over 8 years ago

10.1128/IAI.00339-19

Multi-omics Analyses Reveal Synergistic Carbohydrate Metabolism in Streptococcus mutans-Candida albicans Mixed-Species Biofilms
Cited by: 61
Author(s): Kassapa Ellepola, Tin Truong, Yuan Liu, Qifeng Lin, Teck Kwang Lim, Yew Mun Lee, Tong Cao, Hyun Koo, Chaminda Jayampath Seneviratne
Software Mentions: 2
Published: almost 7 years ago

10.1172/jci.insight.139179

Reduced left atrial cardiomyocyte PITX2 and elevated circulating BMP10 predict atrial fibrillation after ablation
Cited by: 37
Author(s): Jasmeet S. Reyat, Winnie Chua, Victor Roth Cardoso, Anika Witten, Peter Kastner, S. Nashitha Kabir, Moritz F. Sinner, Robin Wesselink, Andrew P. Holmes, Davor Pavlović, Monika Stoll, Stefan Kääb, Georgios V. Gkoutos, Joris R. de Groot, Paulus Kirchhof, Larissa Fabritz
Software Mentions: 2
Published: about 6 years ago

10.1172/jci.insight.136093

MyD88/CD40 signaling retains CAR T cells in a less differentiated state
Cited by: 33
Author(s): Brooke L. Prinzing, Patrick Schreiner, Matthew Bell, Yiping Fan, Giedre Krenciute, Stephen Gottschalk
Software Mentions: 2
Published: almost 6 years ago

10.1172/jci.insight.139445

Smooth muscle–derived progenitor cell myofibroblast differentiation through KLF4 downregulation promotes arterial remodeling and fibrosis
Cited by: 30
Author(s): Sizhao Lu, Austin Jolly, Keith A. Strand, Allison Dubner, Marie Mutryn, Karen S. Moulton, Raphael A. Nemenoff, Mark W. Majesky, Mary C.M. Weiser‐Evans
Software Mentions: 2
Published: almost 6 years ago

10.1172/jci.insight.149381

GADD45A is a protective modifier of neurogenic skeletal muscle atrophy
Cited by: 11
Author(s): Jeffrey T. Ehmsen, Riki Kawaguchi, Damlanur Kaval, Anna E. Johnson, Daniel Nachun, Giovanni Coppola, Ahmet Höke
Software Mentions: 2
Published: about 5 years ago

10.1074/jbc.M117.805051

Effects of chondroitin sulfate proteoglycan 4 (NG2/CSPG4) on soft-tissue sarcoma growth depend on tumor developmental stage
Cited by: 15
Author(s): Shu-Hsuan Claire Hsu, Puviindran Nadesan, Vijitha Puviindran, William B. Stallcup, David G. Kirsch, Benjamin A. Alman
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.RA120.015516

Fc γ receptor IIIa/CD16a processing correlates with the expression of glycan-related genes in human natural killer cells
Cited by: 9
Author(s): Kashyap Patel, Maria C. Rodriguez Benavente, W. Walter Lorenz, Emily M. Mace, Adam W. Barb
Software Mentions: 2
Published: over 5 years ago

10.1007/s00432-018-2631-7

Therapeutic potential of GSK-J4, a histone demethylase KDM6B/JMJD3 inhibitor, for acute myeloid leukemia
Cited by: 68
Author(s): Yunan Li, Mingying Zhang, Mengyao Sheng, Peng Zhang, Zizhen Chen, Wen Xing, Jie Bai, Tao Cheng, Feng Chun Yang, Yuan Zhou
Software Mentions: 2
Published: over 8 years ago

10.1111/jcmm.16419

Circular RNA circANAPC2 mediates the impairment of endochondral ossification by miR‐874‐3p/SMAD3 signalling pathway in idiopathic short stature
Cited by: 12
Author(s): Xijuan Liu, Du Zhi, Xuan Yao, Tianle Sheng, Jinghong Yuan, Jingyu Jia
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.16616

Histone deacetylase 9 deficiency exaggerates uterine M2 macrophage polarization
Cited by: 13
Author(s): Yanqin Liu, Meirong Du, Haiyan Lin
Software Mentions: 2
Published: about 5 years ago

10.1242/jcs.167148

Dgcr8 and Dicer are essential for sex chromosome integrity during meiosis in males
Cited by: 39
Author(s): A Modzelewski, Stephanie Hilz, Elizabeth A. Crate, Caterina T. H. Schweidenback, Elizabeth A. Fogarty, Jennifer K. Grenier, Raimundo Freire, Paula E. Cohen, Andrew Grimson
Software Mentions: 2
Published: over 11 years ago

10.1242/jcs.258568

Genetic compensation for cilia defects in cep290 mutants by upregulation of cilia-associated small GTPases
Cited by: 13
Author(s): Magdalena Cárdenas-Rodríguez, Christina Austin‐Tse, Judith G.M. Bergboer, Elisa Molinari, Yuya Sugano, Ruxandra Bachmann‐Gagescu, John A. Sayer, Iain A. Drummond
Software Mentions: 2
Published: about 5 years ago

10.1093/jxb/erx157

The Arabidopsis Cys2/His2 zinc finger transcription factor ZAT18 is a positive regulator of plant tolerance to drought stress
Cited by: 86
Author(s): Mingzhu Yin, Yanping Wang, Lihua Zhang, Jinzhu Li, Wenli Quan, Li Yang, Qingfeng Wang, Zhulong Chan
Software Mentions: 2
Published: over 9 years ago

10.1093/jxb/ery132

miR156-SPL modules regulate induction of somatic embryogenesis in citrus callus
Cited by: 72
Author(s): Long Jiang, Chaoyang Liu, Meng-Qi Feng, Yun Liu, Xiaomeng Wu, Wen‐Wu Guo
Software Mentions: 2
Published: over 8 years ago

10.1093/jxb/ery220

ERF72 interacts with ARF6 and BZR1 to regulate hypocotyl elongation in Arabidopsis
Cited by: 56
Author(s): Kun Liu, Yihao Li, Xuena Chen, Lijuan Li, Kai Li, Heping Zhao, Yingdian Wang, Shengcheng Han
Software Mentions: 2
Published: over 8 years ago

10.1093/jxb/eraa489

A small secreted protein from Zymoseptoria tritici interacts with a wheat E3 ubiquitin ligase to promote disease
Cited by: 9
Author(s): Sujit Jung Karki, Aisling Reilly, Binbin Zhou, Maurizio Mascarello, John R. Burke, Fiona M. Doohan, Dimitar Douchkov, Patrick Schweizer, Angela Feechan
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1004765

Exome and Transcriptome Sequencing of Aedes aegypti Identifies a Locus That Confers Resistance to Brugia malayi and Alters the Immune Response
Cited by: 35
Author(s): Punita Juneja, Cristina V. Ariani, Yung Shwen Ho, Jewelna Akorli, William J. Palmer, Arnab Pain, Francis M. Jiggins
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.ppat.1005218

The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways
Cited by: 48
Author(s): Michael Tscherner, Florian Zwolanek, Sabrina Jenull, Fritz J. Sedlazeck, Andriy Petryshyn, Ingrid E. Frohner, John Mavrianos, Neeraj Chauhan, Arndt von Haeseler, Karl Kuchler
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1005356

Type I and Type II Interferon Coordinately Regulate Suppressive Dendritic Cell Fate and Function during Viral Persistence
Cited by: 51
Author(s): Cameron R. Cunningham, Ameya S. Champhekar, Michael V. Tullius, Barbara Jane Dillon, Anjie Zhen, Justin Rafael De la Fuente, Jonathan Herskovitz, Heidi Elsaesser, Laura M. Snell, Elizabeth B. Wilson, Juan Carlos de la Torre, Scott G. Kitchen, Marcus A. Horwitz, Steven J. Bensinger, Stephen T. Smale, David G. Brooks
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1005536

Wolbachia Blocks Viral Genome Replication Early in Infection without a Transcriptional Response by the Endosymbiont or Host Small RNA Pathways
Cited by: 75
Author(s): Stephanie M. Rainey, Julien Martinez, Melanie McFarlane, Punita Juneja, Peter Sarkies, Aleksei Lulla, Esther Schnettler, Margus Varjak, Andres Merits, Eric A. Miska, Francis M. Jiggins, Alain Kohl
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1005803

The Prostaglandin E2-EP3 Receptor Axis Regulates Anaplasma phagocytophilum-Mediated NLRC4 Inflammasome Activation
Cited by: 26
Author(s): Xiaowei Wang, Dana K. Shaw, Holly Hammond, Fayyaz S. Sutterwala, Manira Rayamajhi, Kari Ann Shirey, Darren J. Perkins, Joseph V. Bonventre, Thangam Sudha Velayutham, Sean M. Evans, Kyle G. Rodino, Lauren VieBrock, Karen M. Scanlon, Nicholas H. Carbonetti, Jason A. Carlyon, Edward A. Miao, Jere W. McBride, Michail Kotsyfakis, Joao H. F. Pedra
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.ppat.1006582

Streptococcus pneumoniae in the heart subvert the host response through biofilm-mediated resident macrophage killing
Cited by: 53
Author(s): A.T. Shenoy, Terry Brissac, Ryan P. Gilley, Nikhil Kumar, Yong Wang, Norberto González-Juarbe, Whitney S. Hinkle, Sean C. Daugherty, Amol C. Shetty, Sandra Ott, Luke J. Tallon, Jessy Deshane, Hervé Tettelin, Carlos J. Orihuela
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.ppat.1006933

PDZ domain-binding motif of Tax sustains T-cell proliferation in HTLV-1-infected humanized mice
Cited by: 20
Author(s): Éléonore Pérès, Juliana Blin, Emiliano P. Ricci, Maria Artesi, Vincent Hahaut, Anne Van den Broeke, Antoine Corbin, Louis Gazzolo, Lee Ratner, Pierre Jalinot, Madeleine Duc Dodon
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1007441

Quantitative RNAseq analysis of Ugandan KS tumors reveals KSHV gene expression dominated by transcription from the LTd downstream latency promoter
Cited by: 22
Author(s): Timothy M. Rose, A. Gregory Bruce, Serge Barcy, Matt Fitzgibbon, Lisa R Matsumoto, Minako Ikoma, Corey Casper, Jackson Orem, Warren Phipps
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.ppat.1007925

Macaque interferon-induced transmembrane proteins limit replication of SHIV strains in an Envelope-dependent manner
Cited by: 11
Author(s): Amit Sharma, Richard N. McLaughlin, Ryan Basom, Caroline Kikawa, Molly OhAinle, Jacob S. Yount, Michael Emerman, Julie Overbaugh
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1008063

The male mosquito contribution towards malaria transmission: Mating influences the Anopheles female midgut transcriptome and increases female susceptibility to human malaria parasites
Cited by: 22
Author(s): Farah A. Dahalan, Thomas S. Churcher, Nikolai Windbichler, Mara Lawniczak
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1008918

A pathogen branched-chain amino acid catabolic pathway subverts host survival by impairing energy metabolism and the mitochondrial UPR
Cited by: 26
Author(s): Siraje Arif Mahmud, Mohammed A. Qureshi, Madhab Sapkota, Mark W. Pellegrino
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1009224

Reliable, scalable functional genetics in bloodstream-form Trypanosoma congolense in vitro and in vivo
Cited by: 13
Author(s): Georgina Awuah‐Mensah, Jennifer McDonald, Pieter C. Steketee, Delphine Autheman, Sarah Whipple, Simon D’Archivio, Cordelia Brandt, Simon Clare, Katherine Harcourt, Gavin J. Wright, Liam J. Morrison, Catarina Gadelha, Bill Wickstead
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-46462-8

HLA class II-Restricted CD8+ T cells in HIV-1 Virus Controllers
Cited by: 5
Author(s): Tinashe Nyanhete, Alyse Frisbee, Todd Bradley, William J. Faison, Elizabeth Robins, Tamika L. Payne, Stephanie A. Freel, Sheetal Sawant, Kent J. Weinhold, Kevin Wiehe, Barton F. Haynes, Guido Ferrari, Qi-Jing Li, M. Anthony Moody, Georgia D. Tomaras
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-49812-8

Mining MYB transcription factors from the genomes of orchids (Phalaenopsis and Dendrobium) and characterization of an orchid R2R3-MYB gene involved in water-soluble polysaccharide biosynthesis
Cited by: 24
Author(s): Chunmei He, Jaime A. Teixeira da Silva, Haobin Wang, Can Si, Mingze Zhang, Xiaoming Zhang, Mingzhi Li, Jian‐Wen Tan, Jun Duan
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-50561-x

RNA Sequencing revealed differentially expressed genes functionally associated with immunity and tumor suppression during latent phase infection of a vv + MDV in chickens
Cited by: 0
Author(s): Kunzhe Dong, Shuang Chang, Qingmei Xie, Peng Zhao, Huanmin Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-50970-y

Static magnetic field regulates Arabidopsis root growth via auxin signaling
Cited by: 26
Author(s): Yue Jin, Wei Guo, Xupeng Hu, Mengmeng Liu, Xiang Xu, Fenhong Hu, Yiheng Lan, Chenkai Lv, Yanwen Fang, Mengyu Liu, Tieliu Shi, Shisong Ma, Zhicai Fang, Jirong Huang
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-51046-7

Global gene expression analysis of Escherichia coli K-12 DH5α after exposure to 2.4 GHz wireless fidelity radiation
Cited by: 13
Author(s): Ilham Said-Salman, Fatima A. Jebaii, Hoda Yusef, Mohamed E. Moustafa
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-51911-5

Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D Hydrogels
Cited by: 20
Author(s): Roman Goetzke, Hans Keijdener, Julia Franzen, Alina Ostrowska, Selina Nüchtern, Petra Mela, Wolfgang Wagner
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-52374-4

Gene expression profile analysis of ileum transcriptomes in pigs fed Gelsemium elegans plants
Cited by: 1
Author(s): Chong-Yin Huang, Kun Yang, Junsheng Cao, Yujuan Li, Ziyuan Wang, Hui Yu, Zhi-Liang Sun, Xiaofeng Zheng, Zhao‐Ying Liu
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-52222-5

Mapping quantitative trait loci for yield-related traits and predicting candidate genes for grain weight in maize
Cited by: 11
Author(s): Yanming Zhao, Chengfu Su
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-53959-9

Transcriptional profiling reveals differentially expressed genes involved in lipid biosynthesis during cacao seed development
Cited by: 2
Author(s): Fupeng Li, Binhe Wu, Yan Lin, Chaoyun Hao, Xiaowei Qin, Jianxiong Lai, Yinghui Song
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54083-4

Peripheral blood mononuclear cell transcriptomes reveal an over-representation of down-regulated genes associated with immunity in HIV-exposed uninfected infants
Cited by: 7
Author(s): Zaneta D. Musimbi, Martin K. Rono, James R. Otieno, Nelson Kibinge, Lynette Isabella Ochola‐Oyier, Etienne P. de Villiers, Eunice Nduati
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54475-6

LIN28B affects gene expression at the hypothalamic-pituitary axis and serum testosterone levels
Cited by: 5
Author(s): Jaakko T. Leinonen, Yu‐Chia Chen, Jana Pennonen, Leevi Lehtonen, Nella Junna, Taru Tukiainen, Pertti Panula, Elisabeth Widén
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54055-8

Changes in meta-transcriptome of rumen epimural microbial community and liver transcriptome in young calves with feed induced acidosis
Cited by: 5
Author(s): Wenli Li, S.L. Gelsinger, Andrea Edwards, Christina Riehle, Daniel C. Koch
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56451-6

Transcriptome analysis in roots and leaves of wheat seedlings in response to low-phosphorus stress
Cited by: 57
Author(s): Jun Wang, Qin Qin, Jianjun Pan, Lijuan Sun, Yuchun Sun, Yong Xue, Ke Song
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-56575-9

Proline improves switchgrass growth and development by reduced lignin biosynthesis
Cited by: 17
Author(s): Cong Guan, Huifang Cen, Xili Cui, Danyang Tian, Dimiru Tadesse, Yunwei Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-56509-5

Deep sequencing and automated histochemistry of human tissue slice cultures improve their usability as preclinical model for cancer research
Cited by: 6
Author(s): Susann Haehnel, Kristin Reiche, Dennis Loeffler, Andreas Horn, Conny Blumert, Sven-Holger Puppel, Nicole Kaiser, Felicitas Rapp, Michael Rade, Friedemann Horn, Juergen Meixensberger, Ingo Bechmann, Frank Gaunitz, Karsten Winter
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-56566-w

Transcriptome-wide analysis of the SCNT bovine abnormal placenta during mid- to late gestation
Cited by: 8
Author(s): Guang Gao, Shenyuan Wang, Jiaqi Zhang, Guanghua Su, Zhong Zheng, Chunling Bai, Lei Yang, Zhuying Wei, Xiuying Wang, Lanbo Xiao, Ziru Guo, Guangpeng Li, Xianwei Su, Li Zhang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-57786-1

Response of the Salmon Heart Transcriptome to Pancreas Disease: Differences Between High- and Low-Ranking Families for Resistance
Cited by: 10
Author(s): Nick Robinson, Aleksei Krasnov, Erik Burgerhout, Hanne Johnsen, Hooman K. Moghadam, Borghild Hillestad, Muhammad Luqman Aslam, Matthew Baranski, Solomon Antwi Boison
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58995-4

Biologically Aggressive Phenotype and Anti-cancer Immunity Counterbalance in Breast Cancer with High Mutation Rate
Cited by: 64
Author(s): Hideo Takahashi, Mariko Asaoka, Li Yan, Omar M. Rashid, Masanori Oshi, Takashi Ishikawa, Masayuki Nagahashi, Kazuaki Takabe
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-59163-4

Chronic irradiation of human cells reduces histone levels and deregulates gene expression
Cited by: 17
Author(s): Donna Lowe, Mareike Herzog, Thorsten Mosler, Howard A. Cohen, Sarah Felton, Petra Beli, Ken Raj, Yaron Galanty, Stephen Jackson
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63023-6

Skin transcriptome profiling of Changthangi goats highlights the relevance of genes involved in Pashmina production
Cited by: 17
Author(s): Sonika Ahlawat, Reena Arora, Rekha Sharma, Upasna Sharma, Manpreet Kaur, Ashok Kumar, Kritika Singh, Manoj Kumar Singh, R. K. Vijh
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62974-0

HMGA1-pseudogene7 transgenic mice develop B cell lymphomas
Cited by: 10
Author(s): Marco De Martino, Davide De Biase, Floriana Forzati, Sara Carmela Credendino, Giuseppe Palma, Antônio Barbieri, Claudio Arra, Orlando Paciello, Eugenio Gaudio, Maurilio Ponzoni, Gabriella De Vita, Paolo Chieffi, Francesco Bertoni, Alfredo Fusco, Francesco Esposito
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63183-5

Investigating APOE, APP-Aβ metabolism genes and Alzheimer’s disease GWAS hits in brain small vessel ischemic disease
Cited by: 12
Author(s): Sonja Blumenau, Marco Foddis, Susanne Müller, Manuel Holtgrewe, Kajetan Bentele, Daniel Berchtold, Dieter Beule, Ulrich Dirnagl, Celeste Sassi
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-67389-5

Blast-induced hearing impairment in rats is associated with structural and molecular changes of the inner ear
Cited by: 9
Author(s): Ying Wang, Rodrigo Urioste, Yanling Wei, Donna M. Wilder, Peethambaran Arun, Venkata Siva Sai Sujith Sajja, Irene D. Gist, Tracy S. Fitzgerald, Weise Chang, Matthew W. Kelley, Joseph B. Long
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-66496-7

Association between Serum Essential Metal Elements and the Risk of Schizophrenia in China
Cited by: 20
Author(s): Jiahui Ma, Lailai Yan, Tongjun Guo, Siyu Yang, Yaqiong Liu, Qing Xie, Dawei Ni, Jingyu Wang
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-68098-9

Irradiation dependent inflammatory response may enhance satellite cell engraftment
Cited by: 8
Author(s): Bruno Doreste, Silvia Torelli, Jennifer E. Morgan
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-68330-6

New group of transmembrane proteins associated with desiccation tolerance in the anhydrobiotic midge Polypedilum vanderplanki
Cited by: 10
Author(s): Taisiya A. Voronina, А. А. Несмелов, Sabina A. Kondratyeva, Ruslan Deviatiiarov, Yugo Miyata, Shoko Tokumoto, Richard Cornette, Oleg Gusev, Takahiro Kikawada, Elena Shagimardanova
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-68931-1

Transcriptome analysis of feather follicles reveals candidate genes and pathways associated with pheomelanin pigmentation in chickens
Cited by: 17
Author(s): Xinyue Zheng, Bo Zhang, Yawen Zhang, Haian Zhong, Ruixue Nie, Junying Li, Hao Zhang, Changxin Wu
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-73523-0

Transcriptome analysis uncovers the diagnostic value of miR-192-5p/HNF1A-AS1/VIL1 panel in cervical adenocarcinoma
Cited by: 13
Author(s): Jianrong Xu, Jian Zou, Luyao Wu, Weiguo Lü
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-74121-w

Genetic regulation of gene expression of MIF family members in lung tissue
Cited by: 8
Author(s): Laura Flórez-Sampedro, Corry‐Anke Brandsma, Maaike de Vries, Wim Timens, Rene Bults, Cornelis J Vermeulen, Maarten van den Berge, Ma’en Obeidat, Philippe Joubert, David C. Nickle, Gerrit J. Poelarends, Alen Faiz, Barbro N. Melgert
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-74285-5

eQTL mapping of the 12S globulin cruciferin gene PGCRURSE5 as a novel candidate associated with starch content in potato tubers
Cited by: 3
Author(s): Dorota Sołtys‐Kalina, Katarzyna Szajko, Emil Stefańczyk, Paulina Smyda‐Dajmund, Jadwiga Śliwka, Waldemar Marczewski
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-75359-0

Bacterial inducible expression of plant cell wall-binding protein YesO through conflict between Glycine max and saprophytic Bacillus subtilis
Cited by: 10
Author(s): Hideki Sugiura, Ayumi Nagase, Shigetoshi Oiki, Bunzo Mikami, Dai Watanabe, Wataru Hashimoto
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-020-77061-7

Peripheral oxytocin injection modulates vomeronasal sensory activity and reduces pup-directed aggression in male mice
Cited by: 9
Author(s): Thiago S. Nakahara, Antônio Pedro Camargo, Pedro H M Magalhães, Mateus A.A. Souza, Pedro G. Ribeiro, Paulo H Martins-Netto, Vinicius Miessler de Andrade Carvalho, Juliana José, Fábio Papes
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-81189-5

Differential expression and correlation analysis of miRNA–mRNA profiles in swine testicular cells infected with porcine epidemic diarrhea virus
Cited by: 10
Author(s): Xiaoqian Zhang, Li Chang, Bingzhou Zhang, Zhonghua Li, Wei Zeng, Rui Luo, Jiyue Cao, Guofu Cheng, Fan Su, Qigai He
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-81784-6

Analyses of transcriptomes and the first complete genome of Leucocalocybe mongolica provide new insights into phylogenetic relationships and conservation
Cited by: 7
Author(s): Mingzheng Duan, Hongda Bao, Tolgor Bau
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-84140-w

Transcriptomic analysis of granulosa cell populations proximal and distal to the germinal disc of chicken preovulatory follicles
Cited by: 7
Author(s): Guoqiang Zhu, Chao Fang, Chunheng Mo, Yajun Wang, Yan Huang, Juan Li
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88159-x

GLUT1 overexpression enhances glucose metabolism and promotes neonatal heart regeneration
Cited by: 21
Author(s): Viviana M. Fajardo, Iris Feng, Bao Ying Chen, Cesar A. Perez-Ramirez, Baochen Shi, Peter M. Clark, Rong Tian, Ching‐Ling Lien, Matteo Pellegrini, Heather R. Christofk, Haruko Nakano, Atsushi Nakano
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87842-3

An examination of skeletal muscle and hepatic tissue transcriptomes from beef cattle divergent for residual feed intake
Cited by: 9
Author(s): Clare McKenna, Kate Keogh, Richard K. Porter, Sinéad M. Waters, Paul Cormican, David A. Kenny
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-91812-0

Cholesterol-dependent transcriptome remodeling reveals new insight into the contribution of cholesterol to Mycobacterium tuberculosis pathogenesis
Cited by: 14
Author(s): Jakub Pawełczyk, Anna Brzostek, Alina Minias, Przemysław Płociński, Anna Rumijowska-Galewicz, Dominik Strapagiel, Jolanta Zakrzewska‐Czerwińska, Jarosław Dziadek
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-94641-3

Transcriptome-level assessment of the impact of deformed wing virus on honey bee larvae
Cited by: 4
Author(s): Zih-Ting Chang, Yu-Feng Huang, Yuewen Chen, Ming‐Ren Yen, Po‐Ya Hsu, Tzu-Han Chen, Yi-Hsuan Li, King-Wah Chiu, Yu‐Shin Nai
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-94003-z

Transcriptomic landscape of blood platelets in healthy donors
Cited by: 21
Author(s): Anna Supernat, Marta Popęda, Krzysztof Pastuszak, Myron G. Best, Peter Grešner, Sjors In ’t Veld, Bartłomiej Siek, Natalia Bednarz‐Knoll, Matthew T. Rondina, Tomasz Stokowy, Thomas Würdinger, Jacek Jassem, Anna Żaczek
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-97515-w

Molecular underpinnings of division of labour among workers in a socially complex termite
Cited by: 5
Author(s): D. Elsner, Klaus Hartfelder, Judith Korb
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.59328

Heterogeneous somatostatin-expressing neuron population in mouse ventral tegmental area
Cited by: 9
Author(s): Elina Nagaeva, Ivan Zubarev, Carolina Bengtsson Gonzales, Mikko Forss, Kasra Nikouei, Elena de Miguel, Lauri Elsilä, Anni‐Maija Lindén, Jens Hjerling-Leffler, George J Augustine, Esa R. Korpi
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms16047976

RNA Sequencing Identifies Upregulated Kyphoscoliosis Peptidase and Phosphatidic Acid Signaling Pathways in Muscle Hypertrophy Generated by Transgenic Expression of Myostatin Propeptide
Cited by: 16
Author(s): Yuanxin Miao, Jinzeng Yang, Zhong Xu, Jing Lü, Shuhong Zhao, Xinyun Li
Software Mentions: 2
Published: over 11 years ago

10.3390/ijms161126030

A Transcriptomic Study of Maternal Thyroid Adaptation to Pregnancy in Rats
Cited by: 4
Author(s): Ji‐Long Liu, Tong-Song Wang, Miao Zhao, Ying Peng, Yong-Sheng Fu
Software Mentions: 2
Published: almost 11 years ago

10.3390/ijms18061299

Gene Expression Profiling Reveals Potential Players of Left-Right Asymmetry in Female Chicken Gonads
Cited by: 10
Author(s): Zhiguo Wan, Yanan Lu, Rui Li, Xiaoxue Yu, Yang Fang, Cheng-Fang Tu, Zandong Li
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms19010002

Exploring the Mechanisms of Electroacupuncture-Induced Analgesia through RNA Sequencing of the Periaqueductal Gray
Cited by: 19
Author(s): Manli Hu, Hongmei Zhu, Qiulin Zhang, Jingjing Liu, Yi Ding, Juming Zhong, Vitaly Vodyanoy, Mingxing Ding
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms19061728

Gene Profiling in Late Blight Resistance in Potato Genotype SD20
Cited by: 23
Author(s): Xiaohui Yang, Xuewu Guo, Yang Yu, Pei Ye, Xingyao Xiong, Jun Liu, Dan Dong, Guangcun Li
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms19061760

RNA-Seq Analysis Reveals a Positive Role of HTR2A in Adipogenesis in Yan Yellow Cattle
Cited by: 18
Author(s): Jinyan Yun, Haixia Jin, Yang Cao, Lichun Zhang, Yumin Zhao, Xin Jin, Yong Yu
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms19071841

Transcriptomics Analysis of the Chinese Pear Pathotype of Alternaria alternata Gives Insights into Novel Mechanisms of HSAF Antifungal Activities
Cited by: 13
Author(s): Feng He, Bingxin Li, Gan Ai, Alex Machio Kange, Yunxia Zhao, Xiong Zhang, Yixin Jia, Daolong Dou, Fengquan Liu, Haiqun Cao
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms19082359

Non-Coding Transcriptome Maps across Twenty Tissues of the Korean Black Chicken, Yeonsan Ogye
Cited by: 5
Author(s): Hyosun Hong, Han-Ha Chai, Kyoungwoo Nam, Dajeong Lim, Kyung-Tai Lee, Yoon Jung, Chang-Yeon Cho, Jin‐Wu Nam
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms19082315

Substantial Epigenetic Variation Causing Flower Color Chimerism in the Ornamental Tree Prunus mume Revealed by Single Base Resolution Methylome Detection and Transcriptome Sequencing
Cited by: 14
Author(s): Kaifeng Ma, Qixiang Zhang, Tangren Cheng, Xiao-lan Yan, Huitang Pan, Wang Jia
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms19113484

Functional Insights into the Roles of Hormones in the Dendrobium officinale-Tulasnella sp. Germinated Seed Symbiotic Association
Cited by: 9
Author(s): Tao Wang, Zheng Shi, Xiaojing Wang, Lijun Xu, Sun Qi-zhong, Lubin Li
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms19113417

Effects of Nitrogen Level during Seed Production on Wheat Seed Vigor and Seedling Establishment at the Transcriptome Level
Cited by: 11
Author(s): Ding Wen, Haifeng Xu, Liuyong Xie, Mingrong He, Hongcun Hou, Chenglai Wu, Yan Li, Chunqing Zhang
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms19123904

Dysregulation of Lipid Metabolism in Mkp-1 Deficient Mice during Gram-Negative Sepsis
Cited by: 16
Author(s): Jinhui Li, Xiantao Wang, William E. Ackerman, Abel J. Batty, Sean G. Kirk, William M. White, Xianxi Wang, Dimitrios G. Anastasakis, Lobelia Samavati, Irina Buhimschi, Leif D. Nelin, Markus Hafner, Yusen Liu
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms19123908

Defining a Characteristic Gene Expression Set Responsible for Cancer Stem Cell-Like Features in a Sub-Population of Ewing Sarcoma Cells CADO-ES1
Cited by: 12
Author(s): Marc Hotfilder, Nikhil Mallela, Jochen Seggewiß, Uta Dirksen, Eberhard Korsching
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms20092100

Mapping Semaphorins and Netrins in the Pathogenesis of Human Thoracic Aortic Aneurysms
Cited by: 4
Author(s): Dornazsadat Alebrahim, Mangala Nayak, Alison F. Ward, Patricia Ursomanno, Rebecca Shams, Annanina Corsica, Rayan Sleiman, Kissinger Hyppolite Fils, Michele Silvestro, Ludovic Boytard, Tarik Hadi, Bruce Gelb, Bhama Ramkhelawon
Software Mentions: 2
Published: over 7 years ago

10.3390/ijms20235987

Integrative In Silico and In Vitro Transcriptomics Analysis Revealed Gene Expression Changes and Oncogenic Features of Normal Cholangiocytes after Chronic Alcohol Exposure
Cited by: 3
Author(s): Suthipong Chujan, Tawit Suriyo, Jutamaad Satayavivad
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20235864

microRNAs Regulating Human and Mouse Naïve Pluripotency
Cited by: 9
Author(s): Yuliang Wang, Abdiasis M. Hussein, Logeshwaran Somasundaram, Rithika Sankar, Damien Detraux, Julie Mathieu, Hannele Ruohola‐Baker
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21041455

Evaluation of Transcriptomic Regulations behind Metabolic Syndrome in Obese and Lean Subjects
Cited by: 10
Author(s): Magdalena Paczkowska–Abdulsalam, Magdalena Niemira, Agnieszka Bielska, Anna Szałkowska, Beata Anna Raczkowska, Sini Junttila, Attila Gyenesei, Edyta Adamska-Patruno, Katarzyna Maliszewska, Łukasz Szczerbiński, Adam Krętowski
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21072402

Transcriptome Analysis Reveals the Neuro-Immune Interactions in Duck Tembusu Virus-Infected Brain
Cited by: 13
Author(s): Junqin Zhang, Yunzhen Huang, Linlin Li, Jiawen Dong, Ming Liao, Mingfei Sun
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21072445

Comparative Transcriptome Analysis Reveals the Potential Mechanism of Abortion in Tobacco sua-Cytoplasmic Male Sterility
Cited by: 7
Author(s): Zhiwen Liu, Yanfang Liu, Yanfa Sun, Aiguo Yang, Fengxia Li
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21165749

Comparing Gene Expression in the Parabrachial and Amygdala of Diestrus and Proestrus Female Rats after Orofacial Varicella Zoster Injection
Cited by: 6
Author(s): Rebecca Hornung, Addison Pritchard, Paul R. Kinchington, Phillip R. Kramer
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21186515

Markers of Angiogenesis, Lymphangiogenesis, and Epithelial–Mesenchymal Transition (Plasticity) in CIN and Early Invasive Carcinoma of the Cervix: Exploring Putative Molecular Mechanisms Involved in Early Tumor Invasion
Cited by: 6
Author(s): Olga Kurmyshkina, П. И. Ковчур, Ludmila Schegoleva, Tatyana O. Volkova
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21218170

Whole-Transcriptome Sequencing-Based Analysis of DAZL and Its Interacting Genes during Germ Cells Specification and Zygotic Genome Activation in Chickens
Cited by: 6
Author(s): Deivendran Rengaraj, Sohyoung Won, Jong Won Han, DongAhn Yoo, Heebal Kim, Jae Yong Han
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21238888

MicroRNAs from Extracellular Vesicles Secreted by Bovine Embryos as Early Biomarkers of Developmental Competence
Cited by: 15
Author(s): B. Melo-Báez, Yat Sen Wong, C. Aguilera, J. Cabezas, Ana Carolina Furlanetto Mançanares, Gonzalo Riadi, Fidel Ovídio Castro, L. Rodríguez-Álvarez
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21239124

Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane
Cited by: 23
Author(s): Augusto Lima Diniz, Danielle Izilda Rodrigues da Silva, Carolina Gimiliani Lembke, Maximiller Dal-Bianco, Felipe Ten Caten, Forrest Li, Romel Duarte Vilela, Marcelo Menossi, Doreen Ware, Laurício Endres, Gláucia Mendes Souza
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22020781

Macrophage-Derived Inflammation Induces a Transcriptome Makeover in Mesenchymal Stromal Cells Enhancing Their Potential for Tissue Repair
Cited by: 7
Author(s): Inés Maldonado-Lasunción, Nick O’Neill, Oliver Umland, Joost Verhaagen, Martin Oudega
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22020940

The Grapevine E3 Ubiquitin Ligase VriATL156 Confers Resistance against the Downy Mildew Pathogen Plasmopara viticola
Cited by: 3
Author(s): Elodie Vandelle, Pietro Ariani, Alice Regaiolo, Davide Danzi, Arianna Lovato, Claudia Zadra, Nicola Vitulo, Giorgio Gambino, Annalisa Polverari
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22031248

Integrating LCM-Based Spatio-Temporal Transcriptomics Uncovers Conceptus and Endometrial Luminal Epithelium Communication that Coordinates the Conceptus Attachment in Pigs
Cited by: 11
Author(s): Feiyu Wang, Shilei Zhao, Dadong Deng, Weiwei Wang, Xuewen Xu, Xiaolei Liu, Shuhong Zhao, Mei Yu
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22041669

The pip1s Quintuple Mutants Demonstrate the Essential Roles of PIP1s in the Plant Growth and Development of Arabidopsis
Cited by: 3
Author(s): Xing Wang, Yu Wu, Zijin Liu, Tong Liu, Lamei Zheng, Genfa Zhang
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22052687

Effects of Supplemental Lighting on Potassium Transport and Fruit Coloring of Tomatoes Grown in Hydroponics
Cited by: 16
Author(s): Wei Wang, Danxia Liu, Min Qin, Zhenbin Xie, Riyuan Chen, Yiting Zhang
Software Mentions: 2
Published: over 5 years ago

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Papers Mentioning HTSeq 3,071