pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.3389/fphys.2018.01245

Impact of Lactobacillus casei BL23 on the Host Transcriptome, Growth and Disease Resistance in Larval Zebrafish
Cited by: 30
Author(s): Chubin Qin, Yadong Xie, Yibing Wang, Shuning Li, Chao Ran, Shunping He
Software Mentions: 2
Published: about 8 years ago

10.3389/fphys.2021.628777

Inhibiting Mitochondrial Cytochrome c Oxidase Downregulates Gene Transcription After Traumatic Brain Injury in Drosophila
Cited by: 8
Author(s): Ekta Shah, Maik Hüttemann, Thomas H. Sanderson, Katherine Gurdziel, Douglas M. Ruden
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2019.00092

hCLE/RTRAF-HSPC117-DDX1-FAM98B: A New Cap-Binding Complex That Activates mRNA Translation
Cited by: 13
Author(s): Alejandra Pazo, Alicia Pérez-González, Juan Carlos Oliveros, Maite Huarte, Juan Pablo Chavez, Amelia Nieto
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2021.702973

A Detailed Spatial Expression Analysis of Wing Phenotypes Reveals Novel Patterns of Odorant Binding Proteins in the Soybean Aphid, Aphis glycines
Cited by: 3
Author(s): Ling Wang, Hong Yin, Zhiguo Zhu, Shuai Yang, Jia Fan
Software Mentions: 2
Published: about 5 years ago

10.3389/fphys.2018.01889

Cortisol Acting Through the Glucocorticoid Receptor Is Not Involved in Exercise-Enhanced Growth, But Does Affect the White Skeletal Muscle Transcriptome in Zebrafish (Danio rerio)
Cited by: 11
Author(s): Arjan P. Palstra, Silvia Méndez, Ron P. Dirks, Marcel J. M. Schaaf
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2016.00175

Anguillicola crassus Infection Significantly Affects the Silvering Related Modifications in Steady State mRNA Levels in Gas Gland Tissue of the European Eel
Cited by: 13
Author(s): Bernd Pelster, Gabriel Schneebauer, Ron P. Dirks
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2018.00946

Melatonin Induces Parthenocarpy by Regulating Genes in Gibberellin Pathways of ‘Starkrimson’ Pear (Pyrus communis L.)
Cited by: 42
Author(s): Jianlong Liu, Rui Zhai, Fengxia Liu, Yingxiao Zhao, Huibin Wang, Lulu Liu, Chengquan Yang, Zhigang Wang, Fengwang Ma, Lingfei Xu
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2020.01200

Dissection of Root Transcriptional Responses to Low pH, Aluminum Toxicity and Iron Excess Under Pi-Limiting Conditions in Arabidopsis Wild-Type and stop1 Seedlings
Cited by: 10
Author(s): Jonathan Odilón Ojeda-Rivera, Araceli Oropeza-Aburto, Luis Herrera‐Estrella
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2014.00325

Genome-based analysis of the transcriptome from mature chickpea root nodules
Cited by: 17
Author(s): Fabian Afonso-Grunz, Carlos Molina, Klaus Hoffmeier, Lukas Rycak, Himabindu Kudapa, Rajeev K. Varshney, Jean‐Jacques Drevon, Peter Winter, G. Kahl
Software Mentions: 2
Published: about 12 years ago

10.3389/fpls.2015.01136

RNA-Seq Analysis of Rice Roots Reveals the Involvement of Post-Transcriptional Regulation in Response to Cadmium Stress
Cited by: 64
Author(s): Fei He, Qingquan Liu, Zheng Li, Yaqiong Cui, Zhenguo Shen, Luqing Zheng
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2016.01818

Transcriptional Profiling of Rice Treated with MoHrip1 Reveal the Function of Protein Elicitor in Enhancement of Disease Resistance and Plant Growth
Cited by: 13
Author(s): Shun Lv, Zhenzhen Wang, Xiufen Yang, Lan-Ping Guo, Dewen Qiu, Hongmei Zeng
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2016.01894

Functional and RNA-Sequencing Analysis Revealed Expression of a Novel Stay-Green Gene from Zoysia japonica (ZjSGR) Caused Chlorophyll Degradation and Accelerated Senescence in Arabidopsis
Cited by: 12
Author(s): Ke Teng, Zhihui Chang, Xiao Li, Xinbo Sun, Xiaofang Liang, Lu Xu, Yuehui Chao, Liebao Han
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2017.00290

Transcriptomic Profiling of the Maize (Zea mays L.) Leaf Response to Abiotic Stresses at the Seedling Stage
Cited by: 51
Author(s): Pengcheng Li, Wei Cao, Huiying Fang, Shaohang Xu, Yin Su, Yingying Zhang, Dezhou Lin, Jianan Wang, Yufei Chen, Chenwu Xu, Zefeng Yang
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.01732

ALA6, a P4-type ATPase, Is Involved in Heat Stress Responses in Arabidopsis thaliana
Cited by: 22
Author(s): Yue Niu, Dong Qian, Baiyun Liu, Jianchao Ma, Dongshi Wan, Xinyu Wang, Wenliang He, Yun Xiang
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2018.01206

The Digestive System of the Two-Spotted Spider Mite, Tetranychus urticae Koch, in the Context of the Mite-Plant Interaction
Cited by: 37
Author(s): Nicolas Bensoussan, Vladimir Zhurov, Sota Yamakawa, Caroline O’Neil, Takeshi Suzuki, Miodrag Grbić, Vojislava Grbić
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2021.681283

Overexpression of the Peach Transcription Factor Early Bud-Break 1 Leads to More Branches in Poplar
Cited by: 5
Author(s): Xuehui Zhao, Binbin Wen, Chen Li, Qiuping Tan, Li Liu, Xiude Chen, Ling Li, Xiling Fu
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2015.00550

Acetylation of cell wall is required for structural integrity of the leaf surface and exerts a global impact on plant stress responses
Cited by: 21
Author(s): Majse Nafisi, Maria Stranne, Lorenzo Fimognari, Susanna Atwell, Helle Juel Martens, Pai Pedas, Sara Fasmer Hansen, Christiane Nawrath, Henrik Vibe Scheller, Daniel J. Kliebenstein, Yumiko Sakuragi
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2017.00592

Transcriptomics Analyses Reveal Wheat Responses to Drought Stress during Reproductive Stages under Field Conditions
Cited by: 82
Author(s): Jun Ma, Ruiqi Li, Hongguang Wang, Dongxiao Li, Xingyi Wang, Yuechen Zhang, Wenchao Zhen, Huijun Duan, Guijun Yan, Yanming Liu
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2016.00995

Transcription of TIR1-Controlled Genes Can be Regulated within 10 Min by an Auxin-Induced Process. Can TIR1 be the Receptor?
Cited by: 1
Author(s): Corinna Labusch, Yunus Effendi, Martin Fulda, Günther F. E. Scherer
Software Mentions: 2
Published: about 10 years ago

10.3389/fpls.2018.00110

Analysis of Extreme Phenotype Bulk Copy Number Variation (XP-CNV) Identified the Association of rp1 with Resistance to Goss's Wilt of Maize
Cited by: 21
Author(s): Ying Hu, Jie Ren, Zhao Peng, Arnoldo A. Umana, Ha Le, Tatiana Danilova, Junjie Fu, Haiyan Wang, Alison E. Robertson, Scot H. Hulbert, Frank F. White, Sanzhen Liu
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2021.642701

Regulation of 2,4-D Isooctyl Ester on Triticum aestivum and Aegilops tauschii Tillering and Endogenous Phytohormonal Responses
Cited by: 6
Author(s): Haiyan Yu, Hailan Cui, Jingchao Chen, Pingping Chen, Meijing Ji, Songtao Huang, Xiangju Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2015.00536

TAL effectors and activation of predicted host targets distinguish Asian from African strains of the rice pathogen Xanthomonas oryzae pv. oryzicola while strict conservation suggests universal importance of five TAL effectors
Cited by: 79
Author(s): Katherine Wilkins, Nicholas J. Booher, Li Wang, Adam J. Bogdanove
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2021.640606

Transcriptomic Profiling of Apple Calli With a Focus on the Key Genes for ALA-Induced Anthocyanin Accumulation
Cited by: 12
Author(s): Jie Zheng, Longbo Liu, Huihui Tao, Yuyan An, Liangju Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2019.01002

De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression
Cited by: 10
Author(s): Kira C. M. Neller, Camille A Diaz, Adrian E. Platts, Katalin A. Hudak
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2021.719549

High-Throughput Sequencing Reveals the Regulatory Networks of Transcriptome and Small RNAs During the Defense Against Marssonina brunnea in Poplar
Cited by: 4
Author(s): Yangwenke Liao, Qingyue Zhang, Rongrong Cui, Xin Xu, Feng Zhu, Qiang Cheng, Yong Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2021.635714

Complex-Type N-Glycans Influence the Root Hair Landscape of Arabidopsis Seedlings by Altering the Auxin Output
Cited by: 7
Author(s): Manuel Frank, Heidi Kaulfürst-Soboll, Kerstin Fischer, Antje von Schaewen
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.733846

Gene Body Methylation Confers Transcription Robustness in Mangroves During Long-Term Stress Adaptation
Cited by: 3
Author(s): Yushuai Wang, Aimei Dai, Yiping Chen, Tian Tang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2017.00958

Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing
Cited by: 19
Author(s): Mir Asif Iquebal, Khela Ram Soren, Priyanka Gangwar, P. S. Shanmugavadivel, K. Aravind, Deepak Singla, Sarika Jaiswal, Rahul Singh Jasrotia, Sushil K. Chaturvedi, Narendra Pratap Singh, Rajeev K. Varshney, Anil Rai, Dinesh Kumar
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.00784

The TOR Pathway Is Involved in Adventitious Root Formation in Arabidopsis and Potato
Cited by: 37
Author(s): Kexuan Deng, Pan Dong, Wanjing Wang, Li Feng, Fei Xiong, Kai Wang, Shumin Zhang, Shun Feng, Bangjun Wang, Jiankui Zhang, Maozhi Ren
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.01552

Differential Sensitivity of Fruit Pigmentation to Ultraviolet Light between Two Peach Cultivars
Cited by: 47
Author(s): Yun Zhao, Weiqi Dong, Ke Wang, Bo Zhang, Andrew C. Allan, Kui Lin‐Wang, Kunsong Chen, Changjie Xu
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2019.00243

Global Methylomic and Transcriptomic Analyses Reveal the Broad Participation of DNA Methylation in Daily Gene Expression Regulation of Populus trichocarpa
Cited by: 19
Author(s): Lisong Liang, Ying-Ying Chang, Junqian Lu, Xiaojuan Wu, Qi Liu, Weixi Zhang, Xiaohua Su, Bingyu Zhang
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2019.01101

Ethylene Signaling Is Required for Fully Functional Tension Wood in Hybrid Aspen
Cited by: 13
Author(s): Carolin Seyfferth, Bernard A. Wessels, András Gorzsás, Jonathan Love, Markus Rüggeberg, Nicolas Delhomme, Thomas Vain, Kamil Antos, Hannele Tuominen, Björn Sundberg, Judith Felten
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpls.2018.01661

Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets
Cited by: 21
Author(s): Yongbin Peng, Feixue Hou, Que Bai, Peizhou Xu, Yongxiang Liao, Hongyu Zhang, Chaojian Gu, Xiaoshu Deng, Tingkai Wu, Xiaoqiong Chen, Asif Ali
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2016.01080

Identification of Drought Tolerant Mechanisms in Maize Seedlings Based on Transcriptome Analysis of Recombination Inbred Lines
Cited by: 81
Author(s): Min Huang, Chengxuan Chen, Shaowei Wei, Xiaoling Shang, Meiyun Sun, Xia R, Xiangguo Liu, Dongyun Hao, Huabang Chen, Qi Xie
Software Mentions: 2
Published: about 10 years ago

10.3389/fpls.2020.00512

Functional Relevance of Citrulline in the Vegetative Tissues of Watermelon During Abiotic Stresses
Cited by: 28
Author(s): Qiushuo Song, M. S. Joshi, James DiPiazza, Vijay Joshi
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2017.01993

Melatonin Attenuates Potato Late Blight by Disrupting Cell Growth, Stress Tolerance, Fungicide Susceptibility and Homeostasis of Gene Expression in Phytophthora infestans
Cited by: 93
Author(s): Shumin Zhang, Xianzhe Zheng, Rüssel J. Reiter, Shun Feng, Ying Wang, Sen Liu, Jin Liang, Zhengguo Li, Raju Datla, Maozhi Ren
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2021.580846

QTL-Seq and Transcriptome Analysis Disclose Major QTL and Candidate Genes Controlling Leaf Size in Sesame (Sesamum indicum L.)
Cited by: 12
Author(s): Sheng Chen, Shengnan Song, Rong Zhou, Donghua Li, Yuan Gao, Xianghua Cui, Xin Tang, Yanxin Zhang, Jinxing Tu, Xiurong Zhang, Linhai Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fspor.2019.00041

Deficiency of Vgll2 Gene Alters the Gene Expression Profiling of Skeletal Muscle Subjected to Mechanical Overload
Cited by: 1
Author(s): Keisuke Hitachi, Hidehito Inagaki, Hiroki Kurahashi, Hitoshi Okada, Kunihiro Tsuchida, Masahiko Honda
Software Mentions: 2
Published: almost 7 years ago

10.3389/fvets.2020.603584

Transcriptome Profiles of Highly Pathogenic Pure Avian H7N9 Virus-Infected Lungs of BALB/c Mice
Cited by: 1
Author(s): Wenxiao Gong, Kun Huang, Yufei Zhang, Xinglin He, Chengfei Li, Haiying Mao, Yanming Wei, Zhong Zou, Meilin Jin
Software Mentions: 2
Published: over 5 years ago

10.3389/fvets.2021.666838

Genomic and Transcriptomic Characterization of Canine Osteosarcoma Cell Lines: A Valuable Resource in Translational Medicine
Cited by: 6
Author(s): Cecilia Gola, Diana Giannuzzi, Andrea Rinaldi, Selina Iussich, Paola Modesto, Emanuela Morello, Paolo Buracco, Luca Aresu, Raffaella De Maria
Software Mentions: 2
Published: over 5 years ago

10.1007/s10142-017-0585-5

A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice
Cited by: 17
Author(s): Sezgi Biyiklioglu, Burcu Alptekin, Bala Anı Akpınar, Andrea C. Varella, Megan L. Hofland, David K. Weaver, Brian Bothner, Hikmet Budak
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.116.030528

A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize
Cited by: 12
Author(s): Shangang Jia, Aixia Li, Kyla J. Morton, Penny Avoles-Kianian, Shahryar F. Kianian, Chi Zhang, David R. Holding
Software Mentions: 2
Published: about 10 years ago

10.1534/g3.116.034991

Time-Course Analysis of Gene Expression During theSaccharomyces cerevisiaeHypoxic Response
Cited by: 36
Author(s): Nasrine Bendjilali, Samuel MacLeon, Gurmannat Kalra, Stephen D. Willis, A K M Nawshad Hossian, Erica Avery, Olivia Wojtowicz, Mark J. Hickman
Software Mentions: 2
Published: over 9 years ago

10.1534/g3.116.036137

Small RNA Sequencing in Cells and Exosomes Identifies eQTLs and 14q32 as a Region of Active Export
Cited by: 13
Author(s): Emily K. Tsang, Nathan S. Abell, Xin Li, Vanessa Anaya, Jakub Karczewski, David A. Knowles, Raymond G. Sierra, Kevin S. Smith, Stephen B. Montgomery
Software Mentions: 2
Published: over 9 years ago

10.1534/g3.117.041004

RNAseq Analysis of theDrosophilaResponse to the Entomopathogenic NematodeSteinernema
Cited by: 32
Author(s): Sangita Yadav, S. J. Daugherty, Amol C. Shetty, Ioannis Eleftherianos
Software Mentions: 2
Published: over 9 years ago

10.1534/g3.117.043414

RNA Binding Protein Vigilin Collaborates with miRNAs To Regulate Gene Expression for Caenorhabditis elegans Larval Development
Cited by: 6
Author(s): Rebecca Zabinsky, Brett Weum, Mingxue Cui, Min Han
Software Mentions: 2
Published: about 9 years ago

10.1534/g3.117.300493

Uncovering Genomic Regions Associated withTrypanosomaInfections in Wild Populations of the Tsetse FlyGlossina fuscipes
Cited by: 7
Author(s): Andrea Gloria‐Soria, William A. Dunn, Xiaoqing Yu, Aurélien Vigneron, Kuang‐Yao Lee, Mo Li, Brian L. Weiss, Hongyu Zhao, Serap Aksoy, Adalgisa Caccone
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.117.300253

Cell-Type Transcriptomes of the Multicellular Green AlgaVolvox carteriYield Insights into the Evolutionary Origins of Germ and Somatic Differentiation Programs
Cited by: 24
Author(s): Gavriel Matt, James G. Umen
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200208

Differential Expression Profiling of Microspores During the Early Stages of Isolated Microspore Culture Using the Responsive Barley Cultivar Gobernadora
Cited by: 19
Author(s): Sébastien Bélanger, Suzanne Marchand, Pierre-Étienne Jacques, Blake C. Meyers, François Belzile
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200154

A Whole Genome Assembly of the Horn Fly, Haematobia irritans, and Prediction of Genes with Roles in Metabolism and Sex Determination
Cited by: 12
Author(s): Kranti Konganti, Felix D. Guerrero, Faye Schilkey, Peter Ngam, Jennifer L. Jacobi, Pooja Umale, Adalberto A Pérez de León, David W. Threadgill
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200284

Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways
Cited by: 16
Author(s): Sarah N. Anderson, Gregory J Zynda, Jawon Song, Zhaoxue Han, Matthew Vaughn, Qing Li, Nathan M. Springer
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200296

A Catalogue of Putative cis-Regulatory Interactions Between Long Non-coding RNAs and Proximal Coding Genes Based on Correlative Analysis Across Diverse Human Tumors
Cited by: 2
Author(s): Swaraj Basu, Erik Larsson
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.119.400148

Genome and Ontogenetic-Based Transcriptomic Analyses of the Flesh Fly,Sarcophaga bullata
Cited by: 9
Author(s): Ellen O. Martinson, Justin T. Peyton, Yogeshwar D. Kelkar, Emily C. Jennings, Joshua B. Benoit, John H. Werren, David L. Denlinger
Software Mentions: 2
Published: over 7 years ago

10.1093/gigascience/giz027

Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping
Cited by: 55
Author(s): Wei Tang, Xuepeng Sun, Junyang Yue, Xiaofeng Tang, Chen Jiao, Ying Yang, Xiangli Niu, Min Miao, Danfeng Zhang, Shengxiong Huang, Wei Shi, Mingzhang Li, Congbing Fang, Zhangjun Fei, Yongsheng Liu
Software Mentions: 2
Published: over 7 years ago

10.1002/glia.23717

Gene expression profiling reveals a conserved microglia signature in larval zebrafish
Cited by: 37
Author(s): Julie Mazzolini, Sigrid Le Clerc, Gregoire Morisse, Cédric Coulonges, Laura E. Kuil, Tjakko J. van Ham, Jean‐François Zagury, Dirk Sieger
Software Mentions: 2
Published: about 7 years ago

10.1002/glia.23870

Insights into olfactory ensheathing cell development from a laser‐microdissection and transcriptome‐profiling approach
Cited by: 10
Author(s): Surangi Perera, Ruth M. Williams, Rachel Lyne, O. Oztug D. Stubbs, Dennis P. Buehler, Tatjana Sauka‐Spengler, Masaharu Noda, Gos Micklem, E. Michelle Southard‐Smith, Clare V. H. Baker
Software Mentions: 2
Published: about 6 years ago

10.1186/s41065-016-0021-1

Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii)
Cited by: 35
Author(s): Lina Sun, Xiucai Fan, Ying Zhang, Jianfu Jiang, Han Sun, Chonghuai Liu
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41438-019-0168-9

Differential gene expression in non-transgenic and transgenic “M.26” apple overexpressing a peach CBF gene during the transition from eco-dormancy to bud break
Cited by: 15
Author(s): Timothy S. Artlip, Adam McDermaid, Qin Ma, Michael Wisniewski
Software Mentions: 2
Published: about 7 years ago

10.1038/s41438-020-0247-y

Identification and distribution of a single nucleotide polymorphism responsible for the catechin content in tea plants
Cited by: 22
Author(s): Chenkai Jiang, Jianqiang Ma, Yu-Fei Liu, Jie-Dan Chen, Dejiang Ni, Liang Chen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41438-018-0079-1

Transcriptome reprogramming, epigenetic modifications and alternative splicing orchestrate the tomato root response to the beneficial fungus Trichoderma harzianum
Cited by: 80
Author(s): Monica De Palma, Maria Salzano, Clizia Villano, Riccardo Aversano, Matteo Lorito, Michelina Ruocco, Teresa Docimo, Anna Lisa Piccinelli, Nunzio D’Agostino, Marina Tucci
Software Mentions: 2
Published: over 7 years ago

10.1038/s41438-020-0285-5

CPPU may induce gibberellin-independent parthenocarpy associated with PbRR9 in ‘Dangshansu’ pear
Cited by: 16
Author(s): Liu Cong, Ting Wu, Hanting Liu, Huibin Wang, Haiqi Zhang, Guangping Zhao, Yao Wen, Qianrong Shi, Lingfei Xu, Zhigang Wang
Software Mentions: 2
Published: over 6 years ago

10.1038/s41438-020-00426-6

Melon short internode (CmSi) encodes an ERECTA-like receptor kinase regulating stem elongation through auxin signaling
Cited by: 12
Author(s): Sen Yang, Kaige Zhang, Huayu Zhu, Xiaojing Zhang, Wenkai Yan, Ning Xu, Dongming Liu, Jianbin Hu, Yufeng Wu, Yiqun Weng, Luming Yang
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41438-021-00491-5

PbEIL1 acts upstream ofPbCysp1to regulate ovule senescence in seedless pear
Cited by: 10
Author(s): Huibin Wang, Haiqi Zhang, Fangfang Liang, Liu Cong, Linyan Song, Xieyu Li, Rui Zhai, Chengquan Yang, Zhigang Wang, Fengwang Ma, Lingfei Xu
Software Mentions: 2
Published: over 5 years ago

10.1038/s41438-018-0035-0

Investigation of benzylisoquinoline alkaloid biosynthetic pathway and its transcriptional regulation in lotus
Cited by: 39
Author(s): Ximing Deng, Li Zhao, Ting Fang, Yan Xiong, Collins Ogutu, Dong Yang, Sornkanok Vimolmangkang, Yanling Liu, Yuepeng Han
Software Mentions: 2
Published: over 8 years ago

10.1128/IAI.00339-19

Multi-omics Analyses Reveal Synergistic Carbohydrate Metabolism in Streptococcus mutans-Candida albicans Mixed-Species Biofilms
Cited by: 61
Author(s): Kassapa Ellepola, Tin Truong, Yuan Liu, Qifeng Lin, Teck Kwang Lim, Yew Mun Lee, Tong Cao, Hyun Koo, Chaminda Jayampath Seneviratne
Software Mentions: 2
Published: almost 7 years ago

10.1172/jci.insight.139179

Reduced left atrial cardiomyocyte PITX2 and elevated circulating BMP10 predict atrial fibrillation after ablation
Cited by: 37
Author(s): Jasmeet S. Reyat, Winnie Chua, Victor Roth Cardoso, Anika Witten, Peter Kastner, S. Nashitha Kabir, Moritz F. Sinner, Robin Wesselink, Andrew P. Holmes, Davor Pavlović, Monika Stoll, Stefan Kääb, Georgios V. Gkoutos, Joris R. de Groot, Paulus Kirchhof, Larissa Fabritz
Software Mentions: 2
Published: about 6 years ago

10.1172/jci.insight.136093

MyD88/CD40 signaling retains CAR T cells in a less differentiated state
Cited by: 33
Author(s): Brooke L. Prinzing, Patrick Schreiner, Matthew Bell, Yiping Fan, Giedre Krenciute, Stephen Gottschalk
Software Mentions: 2
Published: almost 6 years ago

10.1172/jci.insight.139445

Smooth muscle–derived progenitor cell myofibroblast differentiation through KLF4 downregulation promotes arterial remodeling and fibrosis
Cited by: 30
Author(s): Sizhao Lu, Austin Jolly, Keith A. Strand, Allison Dubner, Marie Mutryn, Karen S. Moulton, Raphael A. Nemenoff, Mark W. Majesky, Mary C.M. Weiser‐Evans
Software Mentions: 2
Published: almost 6 years ago

10.1172/jci.insight.149381

GADD45A is a protective modifier of neurogenic skeletal muscle atrophy
Cited by: 11
Author(s): Jeffrey T. Ehmsen, Riki Kawaguchi, Damlanur Kaval, Anna E. Johnson, Daniel Nachun, Giovanni Coppola, Ahmet Höke
Software Mentions: 2
Published: about 5 years ago

10.1074/jbc.M117.805051

Effects of chondroitin sulfate proteoglycan 4 (NG2/CSPG4) on soft-tissue sarcoma growth depend on tumor developmental stage
Cited by: 15
Author(s): Shu-Hsuan Claire Hsu, Puviindran Nadesan, Vijitha Puviindran, William B. Stallcup, David G. Kirsch, Benjamin A. Alman
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.RA120.015516

Fc γ receptor IIIa/CD16a processing correlates with the expression of glycan-related genes in human natural killer cells
Cited by: 9
Author(s): Kashyap Patel, Maria C. Rodriguez Benavente, W. Walter Lorenz, Emily M. Mace, Adam W. Barb
Software Mentions: 2
Published: over 5 years ago

10.1007/s00432-018-2631-7

Therapeutic potential of GSK-J4, a histone demethylase KDM6B/JMJD3 inhibitor, for acute myeloid leukemia
Cited by: 68
Author(s): Yunan Li, Mingying Zhang, Mengyao Sheng, Peng Zhang, Zizhen Chen, Wen Xing, Jie Bai, Tao Cheng, Feng Chun Yang, Yuan Zhou
Software Mentions: 2
Published: over 8 years ago

10.1111/jcmm.16419

Circular RNA circANAPC2 mediates the impairment of endochondral ossification by miR‐874‐3p/SMAD3 signalling pathway in idiopathic short stature
Cited by: 12
Author(s): Xijuan Liu, Du Zhi, Xuan Yao, Tianle Sheng, Jinghong Yuan, Jingyu Jia
Software Mentions: 2
Published: over 5 years ago

10.1111/jcmm.16616

Histone deacetylase 9 deficiency exaggerates uterine M2 macrophage polarization
Cited by: 13
Author(s): Yanqin Liu, Meirong Du, Haiyan Lin
Software Mentions: 2
Published: about 5 years ago

10.1242/jcs.167148

Dgcr8 and Dicer are essential for sex chromosome integrity during meiosis in males
Cited by: 39
Author(s): A Modzelewski, Stephanie Hilz, Elizabeth A. Crate, Caterina T. H. Schweidenback, Elizabeth A. Fogarty, Jennifer K. Grenier, Raimundo Freire, Paula E. Cohen, Andrew Grimson
Software Mentions: 2
Published: over 11 years ago

10.1242/jcs.258568

Genetic compensation for cilia defects in cep290 mutants by upregulation of cilia-associated small GTPases
Cited by: 13
Author(s): Magdalena Cárdenas-Rodríguez, Christina Austin‐Tse, Judith G.M. Bergboer, Elisa Molinari, Yuya Sugano, Ruxandra Bachmann‐Gagescu, John A. Sayer, Iain A. Drummond
Software Mentions: 2
Published: about 5 years ago

10.1093/jxb/erx157

The Arabidopsis Cys2/His2 zinc finger transcription factor ZAT18 is a positive regulator of plant tolerance to drought stress
Cited by: 86
Author(s): Mingzhu Yin, Yanping Wang, Lihua Zhang, Jinzhu Li, Wenli Quan, Li Yang, Qingfeng Wang, Zhulong Chan
Software Mentions: 2
Published: over 9 years ago

10.1093/jxb/ery132

miR156-SPL modules regulate induction of somatic embryogenesis in citrus callus
Cited by: 72
Author(s): Long Jiang, Chaoyang Liu, Meng-Qi Feng, Yun Liu, Xiaomeng Wu, Wen‐Wu Guo
Software Mentions: 2
Published: over 8 years ago

10.1093/jxb/ery220

ERF72 interacts with ARF6 and BZR1 to regulate hypocotyl elongation in Arabidopsis
Cited by: 56
Author(s): Kun Liu, Yihao Li, Xuena Chen, Lijuan Li, Kai Li, Heping Zhao, Yingdian Wang, Shengcheng Han
Software Mentions: 2
Published: over 8 years ago

10.1093/jxb/eraa489

A small secreted protein from Zymoseptoria tritici interacts with a wheat E3 ubiquitin ligase to promote disease
Cited by: 9
Author(s): Sujit Jung Karki, Aisling Reilly, Binbin Zhou, Maurizio Mascarello, John R. Burke, Fiona M. Doohan, Dimitar Douchkov, Patrick Schweizer, Angela Feechan
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1004765

Exome and Transcriptome Sequencing of Aedes aegypti Identifies a Locus That Confers Resistance to Brugia malayi and Alters the Immune Response
Cited by: 35
Author(s): Punita Juneja, Cristina V. Ariani, Yung Shwen Ho, Jewelna Akorli, William J. Palmer, Arnab Pain, Francis M. Jiggins
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.ppat.1005218

The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways
Cited by: 48
Author(s): Michael Tscherner, Florian Zwolanek, Sabrina Jenull, Fritz J. Sedlazeck, Andriy Petryshyn, Ingrid E. Frohner, John Mavrianos, Neeraj Chauhan, Arndt von Haeseler, Karl Kuchler
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1005356

Type I and Type II Interferon Coordinately Regulate Suppressive Dendritic Cell Fate and Function during Viral Persistence
Cited by: 51
Author(s): Cameron R. Cunningham, Ameya S. Champhekar, Michael V. Tullius, Barbara Jane Dillon, Anjie Zhen, Justin Rafael De la Fuente, Jonathan Herskovitz, Heidi Elsaesser, Laura M. Snell, Elizabeth B. Wilson, Juan Carlos de la Torre, Scott G. Kitchen, Marcus A. Horwitz, Steven J. Bensinger, Stephen T. Smale, David G. Brooks
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1005536

Wolbachia Blocks Viral Genome Replication Early in Infection without a Transcriptional Response by the Endosymbiont or Host Small RNA Pathways
Cited by: 75
Author(s): Stephanie M. Rainey, Julien Martinez, Melanie McFarlane, Punita Juneja, Peter Sarkies, Aleksei Lulla, Esther Schnettler, Margus Varjak, Andres Merits, Eric A. Miska, Francis M. Jiggins, Alain Kohl
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.ppat.1005803

The Prostaglandin E2-EP3 Receptor Axis Regulates Anaplasma phagocytophilum-Mediated NLRC4 Inflammasome Activation
Cited by: 26
Author(s): Xiaowei Wang, Dana K. Shaw, Holly Hammond, Fayyaz S. Sutterwala, Manira Rayamajhi, Kari Ann Shirey, Darren J. Perkins, Joseph V. Bonventre, Thangam Sudha Velayutham, Sean M. Evans, Kyle G. Rodino, Lauren VieBrock, Karen M. Scanlon, Nicholas H. Carbonetti, Jason A. Carlyon, Edward A. Miao, Jere W. McBride, Michail Kotsyfakis, Joao H. F. Pedra
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.ppat.1006582

Streptococcus pneumoniae in the heart subvert the host response through biofilm-mediated resident macrophage killing
Cited by: 53
Author(s): A.T. Shenoy, Terry Brissac, Ryan P. Gilley, Nikhil Kumar, Yong Wang, Norberto González-Juarbe, Whitney S. Hinkle, Sean C. Daugherty, Amol C. Shetty, Sandra Ott, Luke J. Tallon, Jessy Deshane, Hervé Tettelin, Carlos J. Orihuela
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.ppat.1006933

PDZ domain-binding motif of Tax sustains T-cell proliferation in HTLV-1-infected humanized mice
Cited by: 20
Author(s): Éléonore Pérès, Juliana Blin, Emiliano P. Ricci, Maria Artesi, Vincent Hahaut, Anne Van den Broeke, Antoine Corbin, Louis Gazzolo, Lee Ratner, Pierre Jalinot, Madeleine Duc Dodon
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.ppat.1007441

Quantitative RNAseq analysis of Ugandan KS tumors reveals KSHV gene expression dominated by transcription from the LTd downstream latency promoter
Cited by: 22
Author(s): Timothy M. Rose, A. Gregory Bruce, Serge Barcy, Matt Fitzgibbon, Lisa R Matsumoto, Minako Ikoma, Corey Casper, Jackson Orem, Warren Phipps
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.ppat.1007925

Macaque interferon-induced transmembrane proteins limit replication of SHIV strains in an Envelope-dependent manner
Cited by: 11
Author(s): Amit Sharma, Richard N. McLaughlin, Ryan Basom, Caroline Kikawa, Molly OhAinle, Jacob S. Yount, Michael Emerman, Julie Overbaugh
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.ppat.1008063

The male mosquito contribution towards malaria transmission: Mating influences the Anopheles female midgut transcriptome and increases female susceptibility to human malaria parasites
Cited by: 22
Author(s): Farah A. Dahalan, Thomas S. Churcher, Nikolai Windbichler, Mara Lawniczak
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1008918

A pathogen branched-chain amino acid catabolic pathway subverts host survival by impairing energy metabolism and the mitochondrial UPR
Cited by: 26
Author(s): Siraje Arif Mahmud, Mohammed A. Qureshi, Madhab Sapkota, Mark W. Pellegrino
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1009224

Reliable, scalable functional genetics in bloodstream-form Trypanosoma congolense in vitro and in vivo
Cited by: 13
Author(s): Georgina Awuah‐Mensah, Jennifer McDonald, Pieter C. Steketee, Delphine Autheman, Sarah Whipple, Simon D’Archivio, Cordelia Brandt, Simon Clare, Katherine Harcourt, Gavin J. Wright, Liam J. Morrison, Catarina Gadelha, Bill Wickstead
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009475

Paratransgenic manipulation of a tsetse microRNA alters the physiological homeostasis of the fly’s midgut environment
Cited by: 9
Author(s): Yang Liu, Brian L. Weiss, Adeline E Williams, Emre Aksoy, Alessandra de Silva Orfano, Jae Hak Son, Ya Fei Wu, Aurélien Vigneron, Mehmet Karakuş, Serap Aksoy
Software Mentions: 2
Published: over 5 years ago

10.1016/j.postharvbio.2020.111420

New insights into the effects of ethylene on ABA catabolism, sweetening and dormancy in stored potato tubers
Cited by: 18
Author(s): Roberta Tosetti, Amanda J. Waters, Gemma A. Chope, Katherine Cools, M. Carmen Alamar, Simon C. McWilliam, Andrew J. Thompson, Leon A. Terry
Software Mentions: 2
Published: over 5 years ago

10.1007/s13238-016-0278-1

Vitamin C alleviates aging defects in a stem cell model for Werner syndrome
Cited by: 52
Author(s): Ying Liu, Weizhou Zhang, Liang Chang, Yan Han, Liang Sun, Xuejun Gong, Hong Tang, Zunpeng Liu, Huichao Deng, Yanxia Ye, Yu Wang, Jian Li, Jie Qiao, Jing Qu, Weiqi Zhang, Guanghui Liu
Software Mentions: 2
Published: over 10 years ago

10.1007/s13238-018-0560-5

CRISPR/Cas9-mediated gene knockout reveals a guardian role of NF-κB/RelA in maintaining the homeostasis of human vascular cells
Cited by: 17
Author(s): Ping Wang, Zunpeng Liu, Xiaoqian Zhang, Jingyi Li, Liang Sun, Zhenyu Ju, Jian Li, Piu Chan, Guanghui Liu, Weiqi Zhang, Moshi Song, Jing Qu
Software Mentions: 2
Published: about 8 years ago

10.1007/s13238-019-0608-1

Modeling CADASIL vascular pathologies with patient-derived induced pluripotent stem cells
Cited by: 38
Author(s): Ling Chen, Zunpeng Liu, Moshi Song, Weiqi Zhang, Si Wang, Xiaoqian Liu, Shuai Ma, Shuhui Sun, Ling Fu, Qun Chu, Juan Carlos Izpisúa Belmonte, Zhaoxia Wang, Jing Qu, Yun Yuan, Guang Hui Liu
Software Mentions: 2
Published: over 7 years ago

10.1007/s13238-018-0567-y

Chemical screen identifies a geroprotective role of quercetin in premature aging
Cited by: 78
Author(s): Li Geng, Zunpeng Liu, Weiqi Zhang, Wei Li, Zeming Wu, Wei Wang, Rui Ren, Yao Su, Peichang Wang, Liang Sun, Zhenyu Ju, Piu Chan, Moshi Song, Jing Qu, Guanghui Liu
Software Mentions: 2
Published: about 8 years ago

10.1007/s13238-019-0610-7

Telomere-dependent and telomere-independent roles of RAP1 in regulating human stem cell homeostasis
Cited by: 30
Author(s): Xing Zhang, Zunpeng Liu, Xiaoqian Liu, Si Wang, Yiyuan Zhang, Xiaojuan He, Shuhui Sun, Shuai Ma, Ng Shyh‐Chang, Feng Liu, Qiang Wang, Xiaoqun Wang, Lin Liu, Weiqi Zhang, Moshi Song, Guanghui Liu, Jing Qu
Software Mentions: 2
Published: over 7 years ago

10.1007/s13238-020-00740-8

Generation of a Hutchinson–Gilford progeria syndrome monkey model by base editing
Cited by: 44
Author(s): Fang Wang, Weiqi Zhang, Qiong Yang, Yu Kang, Yanling Fan, Jingkuan Wei, Zunpeng Liu, Shao‐Xing Dai, Hao Li, Zifan Li, Lizhu Xu, Chu Chu, Jing Qu, Chenyang Si, Weizhi Ji, Guanghui Liu, Chengzu Long, Yuyu Niu
Software Mentions: 2
Published: about 6 years ago

Projects: pypi: HTSeq

Science Score: 65/100

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Papers Mentioning HTSeq 3,071