pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.3389/fcell.2018.00047

Transcriptomic Profiling of Zebrafish Hair Cells Using RiboTag
Cited by: 26
Author(s): Maggie S. Matern, Alisha Beirl, Yoko Ogawa, Yang Song, Nikhil Paladugu, Katie S. Kindt, Ronna Hertzano
Software Mentions: 2
Published: over 8 years ago

10.3389/fcell.2020.00432

Induced Pluripotent Stem Cells Derived From Two Idiopathic Azoospermia Patients Display Compromised Differentiation Potential for Primordial Germ Cell Fate
Cited by: 11
Author(s): Fang Fang, Zili Li, Qian Zhao, Zhen Ye, Xiuli Gu, Feng Pan, Honggang Li, Wenpei Xiang
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2020.572459

Transferrin Receptor Functionally Marks Thermogenic Adipocytes
Cited by: 9
Author(s): Jin Qiu, Zhi Yong Zhang, Sainan Wang, Yanru Chen, Caizhi Liu, Sainan Xu, Dongmei Wang, Jiping Su, Mengshan Ni, Jian Yu, Xiangdi Cui, Lu Ma, Tianhui Hu, Yepeng Hu, Xuejiang Gu, Xinran Ma, Jiqiu Wang, Lingyan Xu
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcell.2020.00231

Abnormal Cerebellar Development Is Involved in Dystonia-Like Behaviors and Motor Dysfunction of Autistic BTBR Mice
Cited by: 23
Author(s): Rui Xiao, Hongyu Zhong, Xin Li, Yuanyuan Ma, Ruiyu Zhang, Lian Wang, Zhenle Zang, Xiaotang Fan
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2021.688128

Toxocara canis Infection Alters lncRNA and mRNA Expression Profiles of Dog Bone Marrow
Cited by: 5
Author(s): Wen-Bin Zheng, Yang Zou, Qing Liu, Min Hu, Hany M. Elsheikha, Xing Zhu
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2020.616706

Identification of the Myogenetic Oligodeoxynucleotides (myoDNs) That Promote Differentiation of Skeletal Muscle Myoblasts by Targeting Nucleolin
Cited by: 11
Author(s): Sayaka Shinji, Koji Umezawa, Yuma Nihashi, Shun‐ichi Nakamura, Takeshi Shimosato, Tomohide Takaya
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2020.00751

Sex-Dependent RNA Editing and N6-adenosine RNA Methylation Profiling in the Gonads of a Fish, the Olive Flounder (Paralichthys olivaceus)
Cited by: 12
Author(s): Limin Wang, Zhihao Wu, Congcong Zou, Suzhe Liang, Yuxia Zou, Yan Liu, Feng You
Software Mentions: 2
Published: about 6 years ago

10.3389/fcell.2021.651655

Histone Lysine Methyltransferase SETD2 Regulates Coronary Vascular Development in Embryonic Mouse Hearts
Cited by: 8
Author(s): Fengling Chen, Jiewen Chen, Hong Wang, Huayuan Tang, Lei Huang, Shijia Wang, Xinru Wang, Xi Fang, Jie Liu, Li Li, Kunfu Ouyang, Zhen Han
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2020.00122

Comparative Genomic and Transcriptomic Analyses of Mycobacterium kansasii Subtypes Provide New Insights Into Their Pathogenicity and Taxonomy
Cited by: 10
Author(s): Qingtian Guan, Roy Ummels, Fathia Ben Rached, Yara Alzahid, Mohammad Shoaib Amini, Sabir A. Adroub, Jakko van Ingen, Wilbert Bitter, Abdallah Abdallah, Arnab Pain
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2017.00452

Increased Expression of a MicroRNA Correlates with Anthelmintic Resistance in Parasitic Nematodes
Cited by: 19
Author(s): Victoria Gillan, Kirsty Maitland, Roz Laing, Henry Y. Gu, Neil D. Marks, Alan D. Winter, David J. Bartley, Alison A. Morrison, Philip Skuce, Andrew M. Rezansoff, John S. Gilleard, Axel Martinelli, Collette Britton, Eileen Devaney
Software Mentions: 2
Published: almost 9 years ago

10.3389/fcimb.2019.00017

RNA-Seq Revealed Expression of Many Novel Genes Associated With Leishmania donovani Persistence and Clearance in the Host Macrophage
Cited by: 27
Author(s): Mohammad Shadab, Sonali Das, Anindyajit Banerjee, Roma Sinha, Mohammad Asad, Mohd Kamran, Mithun Maji, Baijayanti Jha, Makaraju Deepthi, Manoharan Kumar, Abhishek Tripathi, Bipin Kumar, Saikat Chakrabarti, Nahid Ali
Software Mentions: 2
Published: over 7 years ago

10.3389/fncel.2017.00033

Huntingtin Is Required for Neural But Not Cardiac/Pancreatic Progenitor Differentiation of Mouse Embryonic Stem Cells In vitro
Cited by: 4
Author(s): Man Shan Yu, Naoko Tanese
Software Mentions: 2
Published: over 9 years ago

10.3389/fendo.2021.631680

Integrated Whole-Exome and Transcriptome Sequencing of Sporadic Parathyroid Adenoma
Cited by: 10
Author(s): Ya Hu, Xiang Zhang, Ou Wang, Ming Cui, Xiaobin Li, Mengyi Wang, Surong Hua, Quan Liao
Software Mentions: 2
Published: over 5 years ago

10.3389/fendo.2021.722487

Fluid Secretion by Malpighian Tubules of Rhodnius prolixus: Neuroendocrine Control With New Insights From a Transcriptome Analysis
Cited by: 11
Author(s): Ian Orchard, Jimena Leyria, Areej N. Al-Dailami, Angela B. Lange
Software Mentions: 2
Published: about 5 years ago

10.3389/fendo.2019.00438

Analytical Verification Performance of Afirma Genomic Sequencing Classifier in the Diagnosis of Cytologically Indeterminate Thyroid Nodules
Cited by: 18
Author(s): Yangyang Hao, Yoonha Choi, Joshua E. Babiarz, Richard T. Kloos, Giulia C. Kennedy, Jing Huang, P. Sean Walsh
Software Mentions: 2
Published: about 7 years ago

10.3389/fgene.2017.00176

Coupling Seq-BSA and RNA-Seq Analyses Reveal the Molecular Pathway and Genes Associated with Heading Type in Chinese Cabbage
Cited by: 25
Author(s): Aiqin Gu, Meng Chen, YueQi Chen, Lai Wei, Hui Dong, Yin Lu, Yanhua Wang, Xueping Chen, Zhao Jian-jun, Shuxing Shen
Software Mentions: 2
Published: almost 9 years ago

10.3389/fgene.2020.562434

Systematic Prioritization of Candidate Genes in Disease Loci Identifies TRAFD1 as a Master Regulator of IFNγ Signaling in Celiac Disease
Cited by: 14
Author(s): Adriaan van der Graaf, Maria M. Zorro, Annique Claringbould, Urmo Võsa, Raúl Aguirre-Gamboa, Chan Li, Joram Mooiweer, Isis Ricaño-Ponce, Z Borek, Frits Koning, Yvonne Kooy–Winkelaar, Ludvig M. Sollid, Shuo‐Wang Qiao, Vinod Kumar, Yang Li, Lude Franke, Sebo Withoff, Cisca Wijmenga, Serena Sanna, Iris Jonkers
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2020.603920

QTL Analysis and Fine Mapping of a Major QTL Conferring Kernel Size in Maize (Zea mays)
Cited by: 13
Author(s): Guiying Wang, Yanming Zhao, Wenbo Mao, Xiaojie Ma, Chengfu Su
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2019.00915

Long Read Single-Molecule Real-Time Sequencing Elucidates Transcriptome-Wide Heterogeneity and Complexity in Esophageal Squamous Cells
Cited by: 12
Author(s): Yin-Wei Cheng, Yunmei Chen, Qianqian Zhao, Xing Zhao, Wu Yu, Danze Chen, Lian‐Di Liao, Chen Yang, Qian Yang, Li–Yan Xu, En‐Min Li, Jianzhen Xu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2021.666897

Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) Coinfection Downregulate Immune-Relevant Pathways and Cause Splenic and Kidney Necrosis in Barramundi Under Commercial Farming Conditions
Cited by: 16
Author(s): Jose A. Domingos, Xueyan Shen, Celestine Terence, Saengchan Senapin, Ha Thanh Dong, Marie R. Tan, Susan Gibson-Kueh, Dean R. Jerry
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2018.00369

Multi-Tissue Transcriptome Profiling of North American Derived Atlantic Salmon
Cited by: 11
Author(s): Amin R. Mohamed, Hilary King, Bradley S. Evans, Antônio Reverter, James W. Kijas
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2020.592042

YTHDF2 Inhibits Gastric Cancer Cell Growth by Regulating FOXC2 Signaling Pathway
Cited by: 25
Author(s): Xudong Shen, Kui Zhao, Liming Xu, Guangfeng Cheng, Jian-Hong Zhu, Lei Gan, Yongyou Wu, Zhixiang Zhuang
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.01275

Comparative Transcriptome Analysis Reveals Key Pathways and Hub Genes in Rapeseed During the Early Stage of Plasmodiophora brassicae Infection
Cited by: 27
Author(s): Lixia Li, Ying Long, Hao Li, Xiaoming Wu
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2021.622751

Transcriptome Analysis of Ovarian Follicles Reveals Potential Pivotal Genes Associated With Increased and Decreased Rates of Chicken Egg Production
Cited by: 15
Author(s): Xiaoxia Chen, Xue Sun, Ignatius Musenge Chimbaka, Ning Qin, Xiaoxing Xu, Simushi Liswaniso, Rong Xu, J. M. Gonzalez
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.00891

Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development
Cited by: 7
Author(s): Martin M. Johansson, Philipp Pottmeier, Pascalina Suciu, Tauseef Ahmad, Ammar Zaghlool, Jonatan Halvardson, Elisabeth Darj, Lars Feuk, Christiane Peuckert, Elena Jazin
Software Mentions: 2
Published: about 7 years ago

10.3389/fgene.2018.00415

Overexpression of Chicken IRF7 Increased Viral Replication and Programmed Cell Death to the Avian Influenza Virus Infection Through TGF-Beta/FoxO Signaling Axis in DF-1
Cited by: 9
Author(s): T.H. Kim, Huaijun Zhou
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2020.613162

Gene Expression Changes and Associated Pathways Involved in the Progression of Prostate Cancer Advanced Stages
Cited by: 12
Author(s): Elena A. Pudova, George S. Krasnov, Anastasiya A. Kobelyatskaya, М. В. Савватеева, Maria S. Fedorova, Vladislav Pavlov, K. M. Nyushko, А. Д. Каприн, B. Ya. Alekseev, Trofimov D.Yu. Trofimov, Г. Т. Сухих, Anastasiya V. Snezhkina, Anna V. Kudryavtseva
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2019.00559

Transcriptome Responses to Dexamethasone Depending on Dose and Glucocorticoid Receptor Sensitivity in the Liver
Cited by: 13
Author(s): Eduard Muráni, Nares Trakooljul, Frieder Hadlich, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2018.00402

Ethanol-Induced Behavioral Sensitization Alters the Synaptic Transcriptome and Exon Utilization in DBA/2J Mice
Cited by: 8
Author(s): Megan A. O’Brien, Rory M. Weston, Nihar U. Sheth, Steven Bradley, John W. Bigbee, Ashutosh Kumar Pandey, Robert W. Williams, Jennifer T. Wolstenholme, Michael F. Miles
Software Mentions: 2
Published: about 8 years ago

10.3389/fgene.2021.698046

Whole Transcriptome Analysis Revealed a Stress Response to Deep Underground Environment Conditions in Chinese Hamster V79 Lung Fibroblast Cells
Cited by: 5
Author(s): Lei Duan, Hongying Jiang, Jifeng Liu, Yilin Liu, Tengfei Ma, Yike Xie, Sheng Wang, Juan Cheng, Jian Zou, Jiang Wu, Shixi Liu, Mingzhong Gao, Weimin Liu, Heping Xie
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2020.00460

Impact of DNA Demethylases on the DNA Methylation and Transcription of Arabidopsis NLR Genes
Cited by: 10
Author(s): Weiwen Kong, Xue Xia, Qianqian Wang, Liwei Liu, Shengwei Zhang, Li Ding, Aixin Liu, Honggui La
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.575237

Plant-Based Diets Induce Transcriptomic Changes in Muscle of Zebrafish and Atlantic Salmon
Cited by: 5
Author(s): Anusha K. S. Dhanasiri, Amritha Johny, Xi Xue, Gerd Marit Berge, André Sture Bogevik, Matthew L. Rise, Christiane Kruse Fæste, Jorge M. O. Fernandes
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2020.563473

Lymphocyte-Specific Biomarkers Associated With Preterm Birth and Bronchopulmonary Dysplasia
Cited by: 11
Author(s): Soumyaroop Bhattacharya, Jared A. Mereness, Andrea Baran, Ravi S. Misra, Derick R. Peterson, Richard M. Ryan, Anne Marie Reynolds, Gloria S. Pryhuber, Thomas J. Mariani
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2018.01403

Transcriptome Analysis of Bronchoalveolar Lavage Fluid From Children With Mycoplasma pneumoniae Pneumonia Reveals Natural Killer and T Cell-Proliferation Responses
Cited by: 23
Author(s): Man Gao, Way Kuo, Mengxuan Yang, Fanzheng Meng, Ruipeng Lu, Huadong Zhuang, Genhong Cheng, Xiaosong Wang
Software Mentions: 2
Published: over 8 years ago

10.3389/fimmu.2018.00035

TGF-β-Induced CD8+CD103+ Regulatory T Cells Show Potent Therapeutic Effect on Chronic Graft-versus-Host Disease Lupus by Suppressing B Cells
Cited by: 41
Author(s): Haowen Zhong, Ya Liu, Zhenjian Xu, Peifeng Liang, Hui Yang, Xiao Zhang, Jun Zhao, Junzhen Chen, Sha Fu, Ying Tang, Jun Lv, Julie Wang, Nancy J. Olsen, Anping Xu, Song Guo Zheng
Software Mentions: 2
Published: over 8 years ago

10.3389/fimmu.2021.627926

uhrf1 and dnmt1 Loss Induces an Immune Response in Zebrafish Livers Due to Viral Mimicry by Transposable Elements
Cited by: 14
Author(s): Elena Magnani, Filippo Macchi, Bhavani P. Madakashira, Chi Zhang, Fatima AlAydaroos, Kirsten C. Sadler
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2016.00450

Immunosenescence-Related Transcriptomic and Immunologic Changes in Older Individuals Following Influenza Vaccination
Cited by: 31
Author(s): Richard B. Kennedy, Inna G. Ovsyannikova, Iana H. Haralambieva, Ann L. Oberg, Michael T. Zimmermann, Diane E. Grill, Gregory A. Poland
Software Mentions: 2
Published: almost 10 years ago

10.3389/fimmu.2021.701656

The Transcriptomic Profile of Monocytes from Patients With Sjögren’s Syndrome Is Associated With Inflammatory Parameters and Is Mimicked by Circulating Mediators
Cited by: 11
Author(s): Ana P Lopes, Cornelis P. J. Bekker, Maarten R Hillen, Sofie L M Blokland, Anneline C. Hinrichs, Aridaman Pandit, Aike A. Kruize, Timothy R D J Radstake, Joël A G van Roon
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.743030

NOX2-Deficient Neutrophils Facilitate Joint Inflammation Through Higher Pro-Inflammatory and Weakened Immune Checkpoint Activities
Cited by: 7
Author(s): Yi‐Chu Liao, Szu‐Yu Wu, Ya‐Fang Huang, Pei‐Chi Lo, Tzu‐Yi Chan, Chih-An Chen, Chun-Hsin Wu, Che-Chia Hsu, Chia Liang Yen, Peng Chen, Chi‐Chang Shieh
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2019.01640

Severe Heterotopic Ossification in the Skeletal Muscle and Endothelial Cells Recruitment to Chondrogenesis Are Enhanced by Monocyte/Macrophage Depletion
Cited by: 18
Author(s): Mario Tirone, Anna Giovenzana, Arianna Vallone, Paola Zordan, Martina Sormani, Pier Andrea Nicolosi, Raffaela Meneveri, C. Gigliotti, Antonello E. Spinelli, Renata Bocciardi, Roberto Ravazzolo, Ingrid Cifola, Silvia Brunelli
Software Mentions: 2
Published: about 7 years ago

10.3389/fimmu.2020.00408

Retinoic Acid Exerts Disease Stage-Dependent Effects on Pristane-Induced Lupus
Cited by: 14
Author(s): Leila Abdelhamid, Xavier Cabana-Puig, Brianna Swartwout, Jiyoung Lee, Song Li, Sha Sun, Yaqi Li, A. Catharine Ross, Thomas E. Cecere, Tanya LeRoith, Stephen R. Werre, Haifeng Wang, Christopher M. Reilly, Xin Luo
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2017.00625

Phase II Study of Adjuvant Immunotherapy with the CSF-470 Vaccine Plus Bacillus Calmette–Guerin Plus Recombinant Human Granulocyte Macrophage-Colony Stimulating Factor vs Medium-Dose Interferon Alpha 2B in Stages IIB, IIC, and III Cutaneous Melanoma Patients: A Single Institution, Randomized Study
Cited by: 20
Author(s): José Mordoh, María Betina Pampena, Mariana Aris, Paula A. Blanco, Mónica E. Lombardo, Erika M. Von Euw, Soledad Mac Keon, Michelle Yépez Crow, Alicia Bravo, Juan Manuel O’Connor, Ana Gabriela Orlando, Franco Ramello, Estrella Mariel Levy, María Marcela Barrio
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2016.00228

Mucosal Regulatory T Cells and T Helper 17 Cells in HIV-Associated Immune Activation
Cited by: 34
Author(s): Pushpa Pandiyan, Souheil Antoine Younes, Susan Pereira Ribeiro, Aarthi Talla, David McDonald, Natarajan Bhaskaran, Alan D. Levine, Aaron Weinberg, Rafick Pierre Sékaly
Software Mentions: 2
Published: over 10 years ago

10.3389/fimmu.2017.01342

Early Events of the Reaction Elicited by CSF-470 Melanoma Vaccine Plus Adjuvants: An In Vitro Analysis of Immune Recruitment and Cytokine Release
Cited by: 3
Author(s): María Betina Pampena, María Marcela Barrio, Estefanía Paula Juliá, Paula A. Blanco, Erika M. Von Euw, José Mordoh, Estrella Mariel Levy
Software Mentions: 2
Published: almost 9 years ago

10.3389/fimmu.2017.00765

Intact CD100–CD72 Interaction Necessary for TCR-Induced T Cell Proliferation
Cited by: 19
Author(s): Xiaojun Jiang, Niklas K. Björkström, Espen Melum
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2021.672700

Host-Parasite Interaction of Atlantic salmon (Salmo salar) and the Ectoparasite Neoparamoeba perurans in Amoebic Gill Disease
Cited by: 18
Author(s): Natasha A. Botwright, Amin R. Mohamed, Joel Slinger, Paula C. Lima, James W. Wynne
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2019.01138

A β2-Integrin/MRTF-A/SRF Pathway Regulates Dendritic Cell Gene Expression, Adhesion, and Traction Force Generation
Cited by: 18
Author(s): Carla Guenther, Imrul Faisal, Liisa M. Uotila, Marc Llort Asens, Heidi Harjunpää, Terhi Savinko, Tiina Öhman, Sean Yao, Markus Moser, Stephan W. Morris, Sari Tojkander, Susanna C. Fagerholm
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2021.690069

CD8+ T Cells Involved in Metabolic Inflammation in Visceral Adipose Tissue and Liver of Transgenic Pigs
Cited by: 6
Author(s): Kaiyi Zhang, Tao Cong, Jianping Xu, Jinxue Ruan, Ji‐Han Xia, Wei Zhu, Leilei Xin, Huaqiong Ye, Ning Xie, Boce Xia, Chenxiao Li, Tianwen Wu, Yanfang Wang, Martine Schroyen, Xinhua Xiao, Jian‐Gao Fan, Shulin Yang
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.661338

The mTOR Deficiency in Monocytic Myeloid-Derived Suppressor Cells Protects Mouse Cardiac Allografts by Inducing Allograft Tolerance
Cited by: 7
Author(s): Jiawei Li, Juntao Chen, Mingnan Zhang, Chao Zhang, Renyan Wu, Tianying Yang, Yue Qiu, Jingjing Liu, Tongyu Zhu, Yi Zhang, Ruiming Rong
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2019.01479

Neonatal Intermittent Hypoxia Induces Lasting Sex-Specific Augmentation of Rat Microglial Cytokine Expression
Cited by: 12
Author(s): Elizabeth Kiernan, Tao Wang, Amanda M. Vanderplow, Sneha Cherukuri, Michael E. Cahill, Jyoti J. Watters
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2020.00230

A Novel Microglia-Specific Transcriptional Signature Correlates With Behavioral Deficits in Neuropsychiatric Lupus
Cited by: 20
Author(s): Hadijat M. Makinde, Deborah R. Winter, Daniele Procissi, Elise V. Mike, Ariel Stock, Mary J. Kando, Gaurav Gadhvi, Steven Droho, Christina L. Bloomfield, Salina Dominguez, Maximilian G. Mayr, Jeremy A. Lavine, Chaim Putterman, Carla M. Cuda
Software Mentions: 2
Published: over 6 years ago

10.3389/fmed.2020.624576

Molecular Analysis of IL-5 Receptor Subunit Alpha as a Possible Pharmacogenetic Biomarker in Asthma
Cited by: 7
Author(s): Sandra Elena Pérez, D.H. Heredero Jung, Asunción Garcı́a-Sánchez, Miguel Estravís, Marı́a Jesús Martı́n, Jacinto Ramos‐González, Juan Carlos Triviño, María Isidoro‐García, Catalina Sanz, Ignacio Dávila
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.692313

Endophytic Bacillus altitudinis Strain Uses Different Novelty Molecular Pathways to Enhance Plant Growth
Cited by: 17
Author(s): Dening Zhang, Hongmin Xu, Jingyao Gao, Roxana Portieles, Lihua Du, Xiangyou Gao, Carlos Borroto Nordelo, Orlando Borrás‐Hidalgo
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.01771

Exposure of the Opportunistic Marine Pathogen Photobacterium damselae subsp. damselae to Human Body Temperature Is a Stressful Condition That Shapes the Transcriptome, Viability, Cell Morphology, and Virulence
Cited by: 8
Author(s): Xosé M. Matanza, Carlos R. Osorio
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2017.00098

Modulation of Replicative Lifespan in Cryptococcus neoformans: Implications for Virulence
Cited by: 19
Author(s): Tejas Bouklas, Neena Jain, Bettina C. Fries
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.01674

Discovery and Characterization of an Endo-1,3-Fucanase From Marine Bacterium Wenyingzhuangia fucanilytica: A Novel Glycoside Hydrolase Family
Cited by: 25
Author(s): Jingjing Shen, Yaoguang Chang, Yuying Zhang, Xuanwei Mei, Changhu Xue
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2019.02945

The Fungal-Specific Transcription Factor VpFSTF1 Is Required for Virulence in Valsa pyri
Cited by: 11
Author(s): Alex Machio Kange, Ai Xia, Jierui Si, Bingxin Li, Xiong Zhou, Gan Ai, Feng He, Daolong Dou
Software Mentions: 2
Published: over 6 years ago

10.1186/s13568-020-00971-2

Decreased expression of LRA4, a key gene involved in rhamnose metabolism, caused up-regulated expression of the genes in this pathway and autophagy in Pichia pastoris
Cited by: 1
Author(s): Jian Jiao, Shuai Wang, Hui Tian, Xinxin Xu, Yuhong Zhang, Bo Liu, Wei Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2014.00375

De novo assembly of Aureococcus anophagefferens transcriptomes reveals diverse responses to the low nutrient and low light conditions present during blooms
Cited by: 39
Author(s): Kyle R. Frischkorn, Matthew J. Harke, Christopher J. Gobler, Sonya T. Dyhrman
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2019.02987

Applying a New REFINE Approach in Zymomonas mobilis Identifies Novel sRNAs That Confer Improved Stress Tolerance Phenotypes
Cited by: 4
Author(s): Katie Haning, Sean M Engels, Paige Williams, Margaret Arnold, Lydia M. Contreras
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.03342

A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum
Cited by: 33
Author(s): Rao Huang, Jian Ding, Kunshan Gao, Maria Helena Cruz de Carvalho, Leïla Tirichine, Chris Bowler, Xin Lin
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.01804

Characterization of Two Mitochondrial Genomes and Gene Expression Analysis Reveal Clues for Variations, Evolution, and Large-Sclerotium Formation in Medical Fungus Wolfiporia cocos
Cited by: 2
Author(s): Mengting Chen, Naiyao Chen, Ting Wu, Yinbing Bian, Youjin Deng, Zhangyi Xu
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2018.00508

Csn5 Is Required for the Conidiogenesis and Pathogenesis of the Alternaria alternata Tangerine Pathotype
Cited by: 18
Author(s): Mingshuang Wang, Xiao Yang, Ruoxin Ruan, Huilan Fu, Hongye Li
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.00094

Combined Transcriptome and Proteome Analysis of RpoS Regulon Reveals Its Role in Spoilage Potential of Pseudomonas fluorescens
Cited by: 21
Author(s): Xiaoxiang Liu, Jun Xu, Junli Zhu, Peng Du, Aijun Sun
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2018.01245

Impact of Lactobacillus casei BL23 on the Host Transcriptome, Growth and Disease Resistance in Larval Zebrafish
Cited by: 30
Author(s): Chubin Qin, Yadong Xie, Yibing Wang, Shuning Li, Chao Ran, Shunping He
Software Mentions: 2
Published: about 8 years ago

10.3389/fphys.2021.628777

Inhibiting Mitochondrial Cytochrome c Oxidase Downregulates Gene Transcription After Traumatic Brain Injury in Drosophila
Cited by: 8
Author(s): Ekta Shah, Maik Hüttemann, Thomas H. Sanderson, Katherine Gurdziel, Douglas M. Ruden
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2019.00092

hCLE/RTRAF-HSPC117-DDX1-FAM98B: A New Cap-Binding Complex That Activates mRNA Translation
Cited by: 13
Author(s): Alejandra Pazo, Alicia Pérez-González, Juan Carlos Oliveros, Maite Huarte, Juan Pablo Chavez, Amelia Nieto
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2021.702973

A Detailed Spatial Expression Analysis of Wing Phenotypes Reveals Novel Patterns of Odorant Binding Proteins in the Soybean Aphid, Aphis glycines
Cited by: 3
Author(s): Ling Wang, Hong Yin, Zhiguo Zhu, Shuai Yang, Jia Fan
Software Mentions: 2
Published: about 5 years ago

10.3389/fphys.2018.01889

Cortisol Acting Through the Glucocorticoid Receptor Is Not Involved in Exercise-Enhanced Growth, But Does Affect the White Skeletal Muscle Transcriptome in Zebrafish (Danio rerio)
Cited by: 11
Author(s): Arjan P. Palstra, Silvia Méndez, Ron P. Dirks, Marcel J. M. Schaaf
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2016.00175

Anguillicola crassus Infection Significantly Affects the Silvering Related Modifications in Steady State mRNA Levels in Gas Gland Tissue of the European Eel
Cited by: 13
Author(s): Bernd Pelster, Gabriel Schneebauer, Ron P. Dirks
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2018.00946

Melatonin Induces Parthenocarpy by Regulating Genes in Gibberellin Pathways of ‘Starkrimson’ Pear (Pyrus communis L.)
Cited by: 42
Author(s): Jianlong Liu, Rui Zhai, Fengxia Liu, Yingxiao Zhao, Huibin Wang, Lulu Liu, Chengquan Yang, Zhigang Wang, Fengwang Ma, Lingfei Xu
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2020.01200

Dissection of Root Transcriptional Responses to Low pH, Aluminum Toxicity and Iron Excess Under Pi-Limiting Conditions in Arabidopsis Wild-Type and stop1 Seedlings
Cited by: 10
Author(s): Jonathan Odilón Ojeda-Rivera, Araceli Oropeza-Aburto, Luis Herrera‐Estrella
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2014.00325

Genome-based analysis of the transcriptome from mature chickpea root nodules
Cited by: 17
Author(s): Fabian Afonso-Grunz, Carlos Molina, Klaus Hoffmeier, Lukas Rycak, Himabindu Kudapa, Rajeev K. Varshney, Jean‐Jacques Drevon, Peter Winter, G. Kahl
Software Mentions: 2
Published: about 12 years ago

10.3389/fpls.2015.01136

RNA-Seq Analysis of Rice Roots Reveals the Involvement of Post-Transcriptional Regulation in Response to Cadmium Stress
Cited by: 64
Author(s): Fei He, Qingquan Liu, Zheng Li, Yaqiong Cui, Zhenguo Shen, Luqing Zheng
Software Mentions: 2
Published: almost 11 years ago

10.3389/fpls.2016.01818

Transcriptional Profiling of Rice Treated with MoHrip1 Reveal the Function of Protein Elicitor in Enhancement of Disease Resistance and Plant Growth
Cited by: 13
Author(s): Shun Lv, Zhenzhen Wang, Xiufen Yang, Lan-Ping Guo, Dewen Qiu, Hongmei Zeng
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2016.01894

Functional and RNA-Sequencing Analysis Revealed Expression of a Novel Stay-Green Gene from Zoysia japonica (ZjSGR) Caused Chlorophyll Degradation and Accelerated Senescence in Arabidopsis
Cited by: 12
Author(s): Ke Teng, Zhihui Chang, Xiao Li, Xinbo Sun, Xiaofang Liang, Lu Xu, Yuehui Chao, Liebao Han
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2017.00290

Transcriptomic Profiling of the Maize (Zea mays L.) Leaf Response to Abiotic Stresses at the Seedling Stage
Cited by: 51
Author(s): Pengcheng Li, Wei Cao, Huiying Fang, Shaohang Xu, Yin Su, Yingying Zhang, Dezhou Lin, Jianan Wang, Yufei Chen, Chenwu Xu, Zefeng Yang
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.01732

ALA6, a P4-type ATPase, Is Involved in Heat Stress Responses in Arabidopsis thaliana
Cited by: 22
Author(s): Yue Niu, Dong Qian, Baiyun Liu, Jianchao Ma, Dongshi Wan, Xinyu Wang, Wenliang He, Yun Xiang
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2018.01206

The Digestive System of the Two-Spotted Spider Mite, Tetranychus urticae Koch, in the Context of the Mite-Plant Interaction
Cited by: 37
Author(s): Nicolas Bensoussan, Vladimir Zhurov, Sota Yamakawa, Caroline O’Neil, Takeshi Suzuki, Miodrag Grbić, Vojislava Grbić
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2021.681283

Overexpression of the Peach Transcription Factor Early Bud-Break 1 Leads to More Branches in Poplar
Cited by: 5
Author(s): Xuehui Zhao, Binbin Wen, Chen Li, Qiuping Tan, Li Liu, Xiude Chen, Ling Li, Xiling Fu
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2015.00550

Acetylation of cell wall is required for structural integrity of the leaf surface and exerts a global impact on plant stress responses
Cited by: 21
Author(s): Majse Nafisi, Maria Stranne, Lorenzo Fimognari, Susanna Atwell, Helle Juel Martens, Pai Pedas, Sara Fasmer Hansen, Christiane Nawrath, Henrik Vibe Scheller, Daniel J. Kliebenstein, Yumiko Sakuragi
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2017.00592

Transcriptomics Analyses Reveal Wheat Responses to Drought Stress during Reproductive Stages under Field Conditions
Cited by: 82
Author(s): Jun Ma, Ruiqi Li, Hongguang Wang, Dongxiao Li, Xingyi Wang, Yuechen Zhang, Wenchao Zhen, Huijun Duan, Guijun Yan, Yanming Liu
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2016.00995

Transcription of TIR1-Controlled Genes Can be Regulated within 10 Min by an Auxin-Induced Process. Can TIR1 be the Receptor?
Cited by: 1
Author(s): Corinna Labusch, Yunus Effendi, Martin Fulda, Günther F. E. Scherer
Software Mentions: 2
Published: about 10 years ago

10.3389/fpls.2018.00110

Analysis of Extreme Phenotype Bulk Copy Number Variation (XP-CNV) Identified the Association of rp1 with Resistance to Goss's Wilt of Maize
Cited by: 21
Author(s): Ying Hu, Jie Ren, Zhao Peng, Arnoldo A. Umana, Ha Le, Tatiana Danilova, Junjie Fu, Haiyan Wang, Alison E. Robertson, Scot H. Hulbert, Frank F. White, Sanzhen Liu
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2021.642701

Regulation of 2,4-D Isooctyl Ester on Triticum aestivum and Aegilops tauschii Tillering and Endogenous Phytohormonal Responses
Cited by: 6
Author(s): Haiyan Yu, Hailan Cui, Jingchao Chen, Pingping Chen, Meijing Ji, Songtao Huang, Xiangju Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2015.00536

TAL effectors and activation of predicted host targets distinguish Asian from African strains of the rice pathogen Xanthomonas oryzae pv. oryzicola while strict conservation suggests universal importance of five TAL effectors
Cited by: 79
Author(s): Katherine Wilkins, Nicholas J. Booher, Li Wang, Adam J. Bogdanove
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2021.640606

Transcriptomic Profiling of Apple Calli With a Focus on the Key Genes for ALA-Induced Anthocyanin Accumulation
Cited by: 12
Author(s): Jie Zheng, Longbo Liu, Huihui Tao, Yuyan An, Liangju Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2019.01002

De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression
Cited by: 10
Author(s): Kira C. M. Neller, Camille A Diaz, Adrian E. Platts, Katalin A. Hudak
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2021.719549

High-Throughput Sequencing Reveals the Regulatory Networks of Transcriptome and Small RNAs During the Defense Against Marssonina brunnea in Poplar
Cited by: 4
Author(s): Yangwenke Liao, Qingyue Zhang, Rongrong Cui, Xin Xu, Feng Zhu, Qiang Cheng, Yong Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2021.635714

Complex-Type N-Glycans Influence the Root Hair Landscape of Arabidopsis Seedlings by Altering the Auxin Output
Cited by: 7
Author(s): Manuel Frank, Heidi Kaulfürst-Soboll, Kerstin Fischer, Antje von Schaewen
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.733846

Gene Body Methylation Confers Transcription Robustness in Mangroves During Long-Term Stress Adaptation
Cited by: 3
Author(s): Yushuai Wang, Aimei Dai, Yiping Chen, Tian Tang
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2017.00958

Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing
Cited by: 19
Author(s): Mir Asif Iquebal, Khela Ram Soren, Priyanka Gangwar, P. S. Shanmugavadivel, K. Aravind, Deepak Singla, Sarika Jaiswal, Rahul Singh Jasrotia, Sushil K. Chaturvedi, Narendra Pratap Singh, Rajeev K. Varshney, Anil Rai, Dinesh Kumar
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.00784

The TOR Pathway Is Involved in Adventitious Root Formation in Arabidopsis and Potato
Cited by: 37
Author(s): Kexuan Deng, Pan Dong, Wanjing Wang, Li Feng, Fei Xiong, Kai Wang, Shumin Zhang, Shun Feng, Bangjun Wang, Jiankui Zhang, Maozhi Ren
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.01552

Differential Sensitivity of Fruit Pigmentation to Ultraviolet Light between Two Peach Cultivars
Cited by: 47
Author(s): Yun Zhao, Weiqi Dong, Ke Wang, Bo Zhang, Andrew C. Allan, Kui Lin‐Wang, Kunsong Chen, Changjie Xu
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2019.00243

Global Methylomic and Transcriptomic Analyses Reveal the Broad Participation of DNA Methylation in Daily Gene Expression Regulation of Populus trichocarpa
Cited by: 19
Author(s): Lisong Liang, Ying-Ying Chang, Junqian Lu, Xiaojuan Wu, Qi Liu, Weixi Zhang, Xiaohua Su, Bingyu Zhang
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2019.01101

Ethylene Signaling Is Required for Fully Functional Tension Wood in Hybrid Aspen
Cited by: 13
Author(s): Carolin Seyfferth, Bernard A. Wessels, András Gorzsás, Jonathan Love, Markus Rüggeberg, Nicolas Delhomme, Thomas Vain, Kamil Antos, Hannele Tuominen, Björn Sundberg, Judith Felten
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2018.01661

Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets
Cited by: 21
Author(s): Yongbin Peng, Feixue Hou, Que Bai, Peizhou Xu, Yongxiang Liao, Hongyu Zhang, Chaojian Gu, Xiaoshu Deng, Tingkai Wu, Xiaoqiong Chen, Asif Ali
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2016.01080

Identification of Drought Tolerant Mechanisms in Maize Seedlings Based on Transcriptome Analysis of Recombination Inbred Lines
Cited by: 81
Author(s): Min Huang, Chengxuan Chen, Shaowei Wei, Xiaoling Shang, Meiyun Sun, Xia R, Xiangguo Liu, Dongyun Hao, Huabang Chen, Qi Xie
Software Mentions: 2
Published: about 10 years ago

10.3389/fpls.2020.00512

Functional Relevance of Citrulline in the Vegetative Tissues of Watermelon During Abiotic Stresses
Cited by: 28
Author(s): Qiushuo Song, M. S. Joshi, James DiPiazza, Vijay Joshi
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2017.01993

Melatonin Attenuates Potato Late Blight by Disrupting Cell Growth, Stress Tolerance, Fungicide Susceptibility and Homeostasis of Gene Expression in Phytophthora infestans
Cited by: 93
Author(s): Shumin Zhang, Xianzhe Zheng, Rüssel J. Reiter, Shun Feng, Ying Wang, Sen Liu, Jin Liang, Zhengguo Li, Raju Datla, Maozhi Ren
Software Mentions: 2
Published: almost 9 years ago

Projects: pypi: HTSeq

Science Score: 65/100

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Papers Mentioning HTSeq 3,071