pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.3389/fpls.2019.01002

De novo Assembly of the Pokeweed Genome Provides Insight Into Pokeweed Antiviral Protein (PAP) Gene Expression
Cited by: 10
Author(s): Kira C. M. Neller, Camille A Diaz, Adrian E. Platts, Katalin A. Hudak
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2021.719549

High-Throughput Sequencing Reveals the Regulatory Networks of Transcriptome and Small RNAs During the Defense Against Marssonina brunnea in Poplar
Cited by: 4
Author(s): Yangwenke Liao, Qingyue Zhang, Rongrong Cui, Xin Xu, Feng Zhu, Qiang Cheng, Yong Li
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2021.635714

Complex-Type N-Glycans Influence the Root Hair Landscape of Arabidopsis Seedlings by Altering the Auxin Output
Cited by: 7
Author(s): Manuel Frank, Heidi Kaulfürst-Soboll, Kerstin Fischer, Antje von Schaewen
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.733846

Gene Body Methylation Confers Transcription Robustness in Mangroves During Long-Term Stress Adaptation
Cited by: 3
Author(s): Yushuai Wang, Aimei Dai, Yiping Chen, Tian Tang
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2017.00958

Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing
Cited by: 19
Author(s): Mir Asif Iquebal, Khela Ram Soren, Priyanka Gangwar, P. S. Shanmugavadivel, K. Aravind, Deepak Singla, Sarika Jaiswal, Rahul Singh Jasrotia, Sushil K. Chaturvedi, Narendra Pratap Singh, Rajeev K. Varshney, Anil Rai, Dinesh Kumar
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.00784

The TOR Pathway Is Involved in Adventitious Root Formation in Arabidopsis and Potato
Cited by: 37
Author(s): Kexuan Deng, Pan Dong, Wanjing Wang, Li Feng, Fei Xiong, Kai Wang, Shumin Zhang, Shun Feng, Bangjun Wang, Jiankui Zhang, Maozhi Ren
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.01552

Differential Sensitivity of Fruit Pigmentation to Ultraviolet Light between Two Peach Cultivars
Cited by: 47
Author(s): Yun Zhao, Weiqi Dong, Ke Wang, Bo Zhang, Andrew C. Allan, Kui Lin‐Wang, Kunsong Chen, Changjie Xu
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2019.00243

Global Methylomic and Transcriptomic Analyses Reveal the Broad Participation of DNA Methylation in Daily Gene Expression Regulation of Populus trichocarpa
Cited by: 19
Author(s): Lisong Liang, Ying-Ying Chang, Junqian Lu, Xiaojuan Wu, Qi Liu, Weixi Zhang, Xiaohua Su, Bingyu Zhang
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2019.01101

Ethylene Signaling Is Required for Fully Functional Tension Wood in Hybrid Aspen
Cited by: 13
Author(s): Carolin Seyfferth, Bernard A. Wessels, András Gorzsás, Jonathan Love, Markus Rüggeberg, Nicolas Delhomme, Thomas Vain, Kamil Antos, Hannele Tuominen, Björn Sundberg, Judith Felten
Software Mentions: 2
Published: about 7 years ago

10.3389/fpls.2018.01661

Rice Calcineurin B-Like Protein-Interacting Protein Kinase 31 (OsCIPK31) Is Involved in the Development of Panicle Apical Spikelets
Cited by: 21
Author(s): Yongbin Peng, Feixue Hou, Que Bai, Peizhou Xu, Yongxiang Liao, Hongyu Zhang, Chaojian Gu, Xiaoshu Deng, Tingkai Wu, Xiaoqiong Chen, Asif Ali
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2016.01080

Identification of Drought Tolerant Mechanisms in Maize Seedlings Based on Transcriptome Analysis of Recombination Inbred Lines
Cited by: 81
Author(s): Min Huang, Chengxuan Chen, Shaowei Wei, Xiaoling Shang, Meiyun Sun, Xia R, Xiangguo Liu, Dongyun Hao, Huabang Chen, Qi Xie
Software Mentions: 2
Published: about 10 years ago

10.3389/fpls.2020.00512

Functional Relevance of Citrulline in the Vegetative Tissues of Watermelon During Abiotic Stresses
Cited by: 28
Author(s): Qiushuo Song, M. S. Joshi, James DiPiazza, Vijay Joshi
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2017.01993

Melatonin Attenuates Potato Late Blight by Disrupting Cell Growth, Stress Tolerance, Fungicide Susceptibility and Homeostasis of Gene Expression in Phytophthora infestans
Cited by: 93
Author(s): Shumin Zhang, Xianzhe Zheng, Rüssel J. Reiter, Shun Feng, Ying Wang, Sen Liu, Jin Liang, Zhengguo Li, Raju Datla, Maozhi Ren
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2021.580846

QTL-Seq and Transcriptome Analysis Disclose Major QTL and Candidate Genes Controlling Leaf Size in Sesame (Sesamum indicum L.)
Cited by: 12
Author(s): Sheng Chen, Shengnan Song, Rong Zhou, Donghua Li, Yuan Gao, Xianghua Cui, Xin Tang, Yanxin Zhang, Jinxing Tu, Xiurong Zhang, Linhai Wang
Software Mentions: 2
Published: over 5 years ago

10.3389/fspor.2019.00041

Deficiency of Vgll2 Gene Alters the Gene Expression Profiling of Skeletal Muscle Subjected to Mechanical Overload
Cited by: 1
Author(s): Keisuke Hitachi, Hidehito Inagaki, Hiroki Kurahashi, Hitoshi Okada, Kunihiro Tsuchida, Masahiko Honda
Software Mentions: 2
Published: almost 7 years ago

10.3389/fvets.2020.603584

Transcriptome Profiles of Highly Pathogenic Pure Avian H7N9 Virus-Infected Lungs of BALB/c Mice
Cited by: 1
Author(s): Wenxiao Gong, Kun Huang, Yufei Zhang, Xinglin He, Chengfei Li, Haiying Mao, Yanming Wei, Zhong Zou, Meilin Jin
Software Mentions: 2
Published: almost 6 years ago

10.3389/fvets.2021.666838

Genomic and Transcriptomic Characterization of Canine Osteosarcoma Cell Lines: A Valuable Resource in Translational Medicine
Cited by: 6
Author(s): Cecilia Gola, Diana Giannuzzi, Andrea Rinaldi, Selina Iussich, Paola Modesto, Emanuela Morello, Paolo Buracco, Luca Aresu, Raffaella De Maria
Software Mentions: 2
Published: over 5 years ago

10.1007/s10142-017-0585-5

A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice
Cited by: 17
Author(s): Sezgi Biyiklioglu, Burcu Alptekin, Bala Anı Akpınar, Andrea C. Varella, Megan L. Hofland, David K. Weaver, Brian Bothner, Hikmet Budak
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.116.030528

A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize
Cited by: 12
Author(s): Shangang Jia, Aixia Li, Kyla J. Morton, Penny Avoles-Kianian, Shahryar F. Kianian, Chi Zhang, David R. Holding
Software Mentions: 2
Published: about 10 years ago

10.1534/g3.116.034991

Time-Course Analysis of Gene Expression During theSaccharomyces cerevisiaeHypoxic Response
Cited by: 36
Author(s): Nasrine Bendjilali, Samuel MacLeon, Gurmannat Kalra, Stephen D. Willis, A K M Nawshad Hossian, Erica Avery, Olivia Wojtowicz, Mark J. Hickman
Software Mentions: 2
Published: almost 10 years ago

10.1534/g3.116.036137

Small RNA Sequencing in Cells and Exosomes Identifies eQTLs and 14q32 as a Region of Active Export
Cited by: 13
Author(s): Emily K. Tsang, Nathan S. Abell, Xin Li, Vanessa Anaya, Jakub Karczewski, David A. Knowles, Raymond G. Sierra, Kevin S. Smith, Stephen B. Montgomery
Software Mentions: 2
Published: almost 10 years ago

10.1534/g3.117.041004

RNAseq Analysis of theDrosophilaResponse to the Entomopathogenic NematodeSteinernema
Cited by: 32
Author(s): Sangita Yadav, S. J. Daugherty, Amol C. Shetty, Ioannis Eleftherianos
Software Mentions: 2
Published: over 9 years ago

10.1534/g3.117.043414

RNA Binding Protein Vigilin Collaborates with miRNAs To Regulate Gene Expression for Caenorhabditis elegans Larval Development
Cited by: 6
Author(s): Rebecca Zabinsky, Brett Weum, Mingxue Cui, Min Han
Software Mentions: 2
Published: about 9 years ago

10.1534/g3.117.300493

Uncovering Genomic Regions Associated withTrypanosomaInfections in Wild Populations of the Tsetse FlyGlossina fuscipes
Cited by: 7
Author(s): Andrea Gloria‐Soria, William A. Dunn, Xiaoqing Yu, Aurélien Vigneron, Kuang‐Yao Lee, Mo Li, Brian L. Weiss, Hongyu Zhao, Serap Aksoy, Adalgisa Caccone
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.117.300253

Cell-Type Transcriptomes of the Multicellular Green AlgaVolvox carteriYield Insights into the Evolutionary Origins of Germ and Somatic Differentiation Programs
Cited by: 24
Author(s): Gavriel Matt, James G. Umen
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200208

Differential Expression Profiling of Microspores During the Early Stages of Isolated Microspore Culture Using the Responsive Barley Cultivar Gobernadora
Cited by: 19
Author(s): Sébastien Bélanger, Suzanne Marchand, Pierre-Étienne Jacques, Blake C. Meyers, François Belzile
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200154

A Whole Genome Assembly of the Horn Fly, Haematobia irritans, and Prediction of Genes with Roles in Metabolism and Sex Determination
Cited by: 12
Author(s): Kranti Konganti, Felix D. Guerrero, Faye Schilkey, Peter Ngam, Jennifer L. Jacobi, Pooja Umale, Adalberto A Pérez de León, David W. Threadgill
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200284

Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways
Cited by: 16
Author(s): Sarah N. Anderson, Gregory J Zynda, Jawon Song, Zhaoxue Han, Matthew Vaughn, Qing Li, Nathan M. Springer
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.118.200296

A Catalogue of Putative cis-Regulatory Interactions Between Long Non-coding RNAs and Proximal Coding Genes Based on Correlative Analysis Across Diverse Human Tumors
Cited by: 2
Author(s): Swaraj Basu, Erik Larsson
Software Mentions: 2
Published: over 8 years ago

10.1534/g3.119.400148

Genome and Ontogenetic-Based Transcriptomic Analyses of the Flesh Fly,Sarcophaga bullata
Cited by: 9
Author(s): Ellen O. Martinson, Justin T. Peyton, Yogeshwar D. Kelkar, Emily C. Jennings, Joshua B. Benoit, John H. Werren, David L. Denlinger
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1009475

Paratransgenic manipulation of a tsetse microRNA alters the physiological homeostasis of the fly’s midgut environment
Cited by: 9
Author(s): Yang Liu, Brian L. Weiss, Adeline E Williams, Emre Aksoy, Alessandra de Silva Orfano, Jae Hak Son, Ya Fei Wu, Aurélien Vigneron, Mehmet Karakuş, Serap Aksoy
Software Mentions: 2
Published: over 5 years ago

10.1016/j.postharvbio.2020.111420

New insights into the effects of ethylene on ABA catabolism, sweetening and dormancy in stored potato tubers
Cited by: 18
Author(s): Roberta Tosetti, Amanda J. Waters, Gemma A. Chope, Katherine Cools, M. Carmen Alamar, Simon C. McWilliam, Andrew J. Thompson, Leon A. Terry
Software Mentions: 2
Published: over 5 years ago

10.1007/s13238-016-0278-1

Vitamin C alleviates aging defects in a stem cell model for Werner syndrome
Cited by: 52
Author(s): Ying Liu, Weizhou Zhang, Liang Chang, Yan Han, Liang Sun, Xuejun Gong, Hong Tang, Zunpeng Liu, Huichao Deng, Yanxia Ye, Yu Wang, Jian Li, Jie Qiao, Jing Qu, Weiqi Zhang, Guanghui Liu
Software Mentions: 2
Published: over 10 years ago

10.1007/s13238-018-0560-5

CRISPR/Cas9-mediated gene knockout reveals a guardian role of NF-κB/RelA in maintaining the homeostasis of human vascular cells
Cited by: 17
Author(s): Ping Wang, Zunpeng Liu, Xiaoqian Zhang, Jingyi Li, Liang Sun, Zhenyu Ju, Jian Li, Piu Chan, Guanghui Liu, Weiqi Zhang, Moshi Song, Jing Qu
Software Mentions: 2
Published: over 8 years ago

10.1007/s13238-019-0608-1

Modeling CADASIL vascular pathologies with patient-derived induced pluripotent stem cells
Cited by: 38
Author(s): Ling Chen, Zunpeng Liu, Moshi Song, Weiqi Zhang, Si Wang, Xiaoqian Liu, Shuai Ma, Shuhui Sun, Ling Fu, Qun Chu, Juan Carlos Izpisúa Belmonte, Zhaoxia Wang, Jing Qu, Yun Yuan, Guang Hui Liu
Software Mentions: 2
Published: over 7 years ago

10.1007/s13238-018-0567-y

Chemical screen identifies a geroprotective role of quercetin in premature aging
Cited by: 78
Author(s): Li Geng, Zunpeng Liu, Weiqi Zhang, Wei Li, Zeming Wu, Wei Wang, Rui Ren, Yao Su, Peichang Wang, Liang Sun, Zhenyu Ju, Piu Chan, Moshi Song, Jing Qu, Guanghui Liu
Software Mentions: 2
Published: about 8 years ago

10.1007/s13238-019-0610-7

Telomere-dependent and telomere-independent roles of RAP1 in regulating human stem cell homeostasis
Cited by: 30
Author(s): Xing Zhang, Zunpeng Liu, Xiaoqian Liu, Si Wang, Yiyuan Zhang, Xiaojuan He, Shuhui Sun, Shuai Ma, Ng Shyh‐Chang, Feng Liu, Qiang Wang, Xiaoqun Wang, Lin Liu, Weiqi Zhang, Moshi Song, Guanghui Liu, Jing Qu
Software Mentions: 2
Published: over 7 years ago

10.1007/s13238-020-00740-8

Generation of a Hutchinson–Gilford progeria syndrome monkey model by base editing
Cited by: 44
Author(s): Fang Wang, Weiqi Zhang, Qiong Yang, Yu Kang, Yanling Fan, Jingkuan Wei, Zunpeng Liu, Shao‐Xing Dai, Hao Li, Zifan Li, Lizhu Xu, Chu Chu, Jing Qu, Chenyang Si, Weizhi Ji, Guanghui Liu, Chengzu Long, Yuyu Niu
Software Mentions: 2
Published: about 6 years ago

10.1080/15476286.2018.1532253

RNase Y-mediated regulation of the streptococcal pyrogenic exotoxin B
Cited by: 9
Author(s): Laura Broglia, Solange Lise Materne, Anne-Laure Lécrivain, Karin Hahnke, Anaïs Le Rhun, Emmanuelle Charpentier
Software Mentions: 2
Published: about 8 years ago

10.1098/rsos.171718

Differential gene expression is not required for facultative sex allocation: a transcriptome analysis of brain tissue in the parasitoid wasp Nasonia vitripennis
Cited by: 6
Author(s): Nicola Cook, Rebecca A. Boulton, Jade Green, Urmi Trivedi, Eran Tauber, Bart Pannebakker, Michael G. Ritchie, David M. Shuker
Software Mentions: 2
Published: over 8 years ago

10.1016/j.redox.2020.101434

Redox activation of excitatory pathways in auditory neurons as mechanism of age-related hearing loss
Cited by: 28
Author(s): Francis Rousset, German Nacher-Soler, Marta Coelho, Sten Ilmjärv, Vivianne Beatrix Christina Kokje, Antoine Marteyn, Yves Cambet, Michael Perny, Marta Roccio, Vincent Jaquet, Pascal Senn, Karl Heinz Krause
Software Mentions: 2
Published: over 6 years ago

10.1016/j.redox.2021.102030

Compensatory expression of NRF2-dependent antioxidant genes is required to overcome the lethal effects of Kv11.1 activation in breast cancer cells and PDOs
Cited by: 5
Author(s): Vitalyi Senyuk, Najmeh Eskandari, Ying Jiang, Rebeca García-Varela, Rachel Sundstrom, Luigi Leanza, Roberta Peruzzo, Mark E. Burkard, Richard D. Minshall, Sandro Gentile
Software Mentions: 2
Published: about 5 years ago

10.1186/s12958-021-00702-7

Irisin deletion induces a decrease in growth and fertility in mice
Cited by: 12
Author(s): Yunjing Luo, Xiaoyong Qiao, Yaxian Ma, Hongxia Deng, Charles C. Xu, Liangzhi Xu
Software Mentions: 2
Published: over 5 years ago

10.1186/s12931-019-1038-6

AGER expression and alternative splicing in bronchial biopsies of smokers and never smokers
Cited by: 20
Author(s): Alen Faiz, Maarten van den Berge, Cornelis J Vermeulen, Nick H. T. ten Hacken, Victor Guryev, Simon D. Pouwels
Software Mentions: 2
Published: over 7 years ago

10.1186/s12284-021-00474-z

RETRACTED ARTICLE: Light Harvesting-like Protein 3 Interacts with Phytoene Synthase and Is Necessary for Carotenoid and Chlorophyll Biosynthesis in Rice
Cited by: 0
Author(s): Yun Feng, Debatosh Das, Tao Song, Jianhua Zhang
Software Mentions: 2
Published: over 5 years ago

10.1126/sciadv.aaw6710

The prostate cancer risk variant rs55958994 regulates multiple gene expression through extreme long-range chromatin interaction to control tumor progression
Cited by: 34
Author(s): Yingjuan Qian, Lei Zhang, Mingyang Cai, Hongxia Li, Heming Xu, Huan Yang, Zhongfang Zhao, Suhn Kyong Rhie, Peggy J. Farnham, Jiandang Shi, Wange Lu
Software Mentions: 2
Published: about 7 years ago

10.1126/sciadv.aaw4717

Neuronal GPCR NPR-8 regulates C. elegans defense against pathogen infection
Cited by: 34
Author(s): Durai Sellegounder, Yiyong Liu, Phillip Wibisono, Chia-Hui Chen, David J. Leap, Jesse Sun
Software Mentions: 2
Published: almost 7 years ago

10.1126/sciadv.abi8787

Optogenetic modeling of human neuromuscular circuits in Duchenne muscular dystrophy with CRISPR and pharmacological corrections
Cited by: 14
Author(s): Amaia Paredes‐Redondo, Peter Harley, Eleni Maniati, David Ryan, Sandra Louzada, Jinhong Meng, Anna Kowala, Beiyuan Fu, Fengtang Yang, Pengtao Liu, Silvia Marino, Olivier Pourquié, Francesco Muntoni, Jun Wang, Ivo Lieberam, Yung‐Yao Lin
Software Mentions: 2
Published: about 5 years ago

10.1038/s41597-019-0087-5

Activity/exercise-induced changes in the liver transcriptome after chronic spinal cord injury
Cited by: 8
Author(s): Julia H. Chariker, Sujata Saraswat Ohri, Cynthia Gomes, Fiona Brabazon, Kathryn A. Harman, Kathryn M. DeVeau, David S.K. Magnuson, Michał Hetman, Jeffrey C. Petruska, Scott R. Whittemore, Eric C. Rouchka
Software Mentions: 2
Published: over 7 years ago

10.1038/srep14617

mirPRo–a novel standalone program for differential expression and variation analysis of miRNAs
Cited by: 34
Author(s): Jieming Shi, Min Dong, Lei Li, Lin Liu, Agustín Luz-Madrigal, Panagiotis A. Tsonis, Katia Del Rio‐Tsonis, Chun Liang
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep18794

MicroRNAs in Honey Bee Caste Determination
Cited by: 93
Author(s): Regan Ashby, Sylvain Forêt, Iain Searle, Ryszard Maleszka
Software Mentions: 2
Published: over 10 years ago

10.1038/srep21124

Comparative transcriptome analysis among parental inbred and crosses reveals the role of dominance gene expression in heterosis in Drosophila melanogaster
Cited by: 11
Author(s): Xianwen Wu, Rongni Li, Qianqian Li, Haigang Bao, Changxin Wu
Software Mentions: 2
Published: over 10 years ago

10.1038/srep24985

Characterization of key triacylglycerol biosynthesis processes in rhodococci
Cited by: 63
Author(s): Sawsan Amara, Nicolas Seghezzi, Hiroshi Otani, Carlos Díaz-Salazar, Jie Liu, Lindsay D. Eltis
Software Mentions: 2
Published: over 10 years ago

10.1038/srep25493

Large-scale rewiring of innate immunity circuitry and microRNA regulation during initial rice blast infection
Cited by: 26
Author(s): Ze-Yuan Li, Jing Xia, Zheng Chen, Yang Yu, Quanfeng Li, Yuchan Zhang, Jinping Zhang, Congying Wang, Xiaoyuan Zhu, Weixiong Zhang, Yue‐Qin Chen
Software Mentions: 2
Published: over 10 years ago

10.1038/srep26657

The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation
Cited by: 25
Author(s): Charles C. Bell, Paulo Amaral, Anton M.F. Kalsbeek, Graham Magor, Kevin R. Gillinder, Pierre Tangermann, Lorena Di Lisio, Seth W. Cheetham, Franziska Gruhl, Jessica E. Frith, Michael R. Tallack, Ke Lin Ru, Joanna Crawford, John S. Mattick, Marcel E. Dinger, Andrew C. Perkins
Software Mentions: 2
Published: over 10 years ago

10.1038/srep27507

Genome-wide DNA methylation profiles changes associated with constant heat stress in pigs as measured by bisulfite sequencing
Cited by: 60
Author(s): Ya Hao, Yanjun Cui, Xianhong Gu
Software Mentions: 2
Published: over 10 years ago

10.1038/srep27454

CRAF R391W is a melanoma driver oncogene
Cited by: 10
Author(s): Mohammad Atefi, Bjoern Titz, Jennifer Tsoi, Earl Avramis, Allison Le, Charles Wang Wai Ng, Anastasia Lomova, Amanda Lassen, Michael Friedman, Bartosz Chmielowski, Antoni Ribas, Thomas G. Graeber
Software Mentions: 2
Published: over 10 years ago

10.1038/srep35970

Insertion of a knockout-first cassette in Ampd1 gene leads to neonatal death by disruption of neighboring genes expression
Cited by: 18
Author(s): Yifan Pan, Lusi Zhang, Qiong Liu, Ying Liu, Hui Guo, Ping Yu, Hui Peng, Beisha Tang, Zhengmao Hu, Jingping Zhao, Kun Xia, Jia‐Da Li
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep37280

The transcription cofactor CRTC1 protects from aberrant hepatic lipid accumulation
Cited by: 10
Author(s): Hwijin Kim
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep37388

Connexin 32-mediated cell-cell communication is essential for hepatic differentiation from human embryonic stem cells
Cited by: 32
Author(s): Jinhua Qin, Ming‐Yang Chang, Shuyong Wang, Zhenbo Liu, Wei Zhu, Yi Wang, Fangfang Yan, Jian Li, Bowen Zhang, Guifang Dou, Jiang Liu, Xuetao Pei, Yunfang Wang
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep37923

Digital gene expression profiling analysis of duodenum transcriptomes in SD rats administered ferrous sulfate or ferrous glycine chelate by gavage
Cited by: 15
Author(s): Zhuo Zhao, Shan Fang, Qiaoling Hu, Danping Huang, Jie Feng
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep39022

Gene network analysis identifies rumen epithelial cell proliferation, differentiation and metabolic pathways perturbed by diet and correlated with methane production
Cited by: 18
Author(s): Ruidong Xiang, Jody McNally, Suzanne Rowe, Arjan Jonker, C. S. Pinares-Patiño, V. H. Oddy, Phil Vercoe, John C. McEwan, Brian P. Dalrymple
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep40127

The long non-coding RNA NEAT1 is responsive to neuronal activity and is associated with hyperexcitability states
Cited by: 81
Author(s): Guy Barry, James Briggs, Do Won Hwang, Samuel Nayler, Patrick R.J. Fortuna, Nicky Jonkhout, Fabien Dachet, Jesper L.V. Mååg, Pieter Mestdagh, Erin M. Singh, Lotta Avesson, Dominik C. Kaczorowski, Ezgi Öztürk, Nigel C. Jones, Irina Vetter, Luis Arriola‐Martinez, Jianfei Hu, Glória Regina Franco, Victoria M. Warn, Andrew Gong, Marcel E. Dinger, Frank Rigo, Leonard Lipovich, Margaret J. Morris, Terence J. O’Brien, Dong Hoon Lee, Jeffrey A. Loeb, Seth Blackshaw, John S. Mattick, Ernst J. Wolvetang
Software Mentions: 2
Published: over 9 years ago

10.1038/srep40121

Diversity, distribution, and significance of transposable elements in the genome of the only selfing hermaphroditic vertebrate Kryptolebias marmoratus
Cited by: 28
Author(s): Jae-Sung Rhee, Beom-Soon Choi, Jaebum Kim, Bomi Kim, Young-Mi Lee, Il-Chan Kim, Akira Kanamori, Ik‐Young Choi, Manfred Schartl, Jae‐Seong Lee
Software Mentions: 2
Published: over 9 years ago

10.1038/srep42400

Expression and distribution of extensins and AGPs in susceptible and resistant banana cultivars in response to wounding and Fusarium oxysporum
Cited by: 27
Author(s): Yunli Wu, Wei Fan, Xiaoquan Li, Houbin Chen, Tomáš Takáč, Olga Šamajová, Fabrice Musana Rwalinda, Lijuan Xie, Jun Ma, Jozef Šamaj, Chun Xu
Software Mentions: 2
Published: over 9 years ago

10.1038/srep44180

Transcriptome analysis of a wild bird reveals physiological responses to the urban environment
Cited by: 86
Author(s): Hannah Watson, Elin Videvall, Martin N. Andersson, Caroline Isaksson
Software Mentions: 2
Published: over 9 years ago

10.1038/srep45113

Early metabolic and transcriptional variations in fruit of natural white-fruited Fragaria vesca genotypes
Cited by: 42
Author(s): Katja Härtl, Alisandra K. Denton, Katrin Franz-Oberdorf, Thomas Hoffmann, Melanie Spornraft, Björn Usadel, Wilfried Schwab
Software Mentions: 2
Published: over 9 years ago

10.1038/srep45365

Epigenome mapping highlights chromatin-mediated gene regulation in the protozoan parasite Trichomonas vaginalis
Cited by: 12
Author(s): Min Song, Mi-Kyoung Kim, Yun Young Choi, Myung‐hee Yi, Juri Kim, Soon‐Jung Park, Tai Soon Yong, Hyoung‐Pyo Kim
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-00403-5

Differential expression of chemosensory-protein genes in midguts in response to diet of Spodoptera litura
Cited by: 23
Author(s): Xin Yi, Jiangwei Qi, Xiaofan Zhou, Hu Mei, Zhenbang Guo
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01617-3

Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data
Cited by: 212
Author(s): Celine Everaert, Manuel Luypaert, Jesper L.V. Mååg, Quek Xiu Cheng, Marcel E. Dinger, Jan Hellemans, Pieter Mestdagh
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-03024-0

RNAseq analysis reveals pathways and candidate genes associated with salinity tolerance in a spaceflight-induced wheat mutant
Cited by: 57
Author(s): Hui Xiong, Huijun Guo, Yi Xie, Liyan Zhao, Jun Gu, Shirong Zhao, Junhui Li, Luxiang Liu
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-03020-4

WhiB4 Regulates the PE/PPE Gene Family and is Essential for Virulence of Mycobacterium marinum
Cited by: 20
Author(s): Jing Wu, Huan-wei Ru, Zhi-hao Xiang, Jun Jiang, Yuchen Wang, Lu Zhang, Jun Liu
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-03333-4

A loose endosperm structure of wheat seed produced under low nitrogen level promotes early germination by accelerating water uptake
Cited by: 17
Author(s): Ding Wen, Haifeng Xu, Liuyong Xie, Mingrong He, Hongcun Hou, Chunqing Zhang
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-04936-7

Nuclear receptors connect progenitor transcription factors to cell cycle control
Cited by: 14
Author(s): Marta Neto, Marina Naval-Sánchez, Delphine Potier, Paulo Sérgio Pereira, Dirk Geerts, Stein Aerts, Fernando Casares
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-04336-x

Genome-wide differential mRNA expression profiles in follicles of two breeds and at two stages of estrus cycle of gilts
Cited by: 20
Author(s): Qingpo Chu, Bo Zhou, Fangming Xu, Ruonan Chen, Chunyan Shen, Tingting Liang, Yuan Li, A. P. Schinckel
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-05349-2

Vertical sleeve gastrectomy reverses diet-induced gene-regulatory changes impacting lipid metabolism
Cited by: 13
Author(s): Juan Du, Jingyan Tian, Lili Ding, Candi Trac, Brian Xia, Siming Sun, Dustin E. Schones, Wendong Huang
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-05990-x

The molecular mechanisms of Monascus purpureus M9 responses to blue light based on the transcriptome analysis
Cited by: 16
Author(s): Di Chen, Mianhua Chen, Shu-Fen Wu, Zhenjing Li, Hua Yang, Changlu Wang
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-06518-z

Physiological and transcriptome analysis of He-Ne laser pretreated wheat seedlings in response to drought stress
Cited by: 36
Author(s): Zongbo Qiu, Mengmeng Yuan, Yanyan He, Yongfang Li, Liang Zhang
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-06738-3

Transcriptomic Biomarkers to Discriminate Bacterial from Nonbacterial Infection in Adults Hospitalized with Respiratory Illness
Cited by: 53
Author(s): Soumyaroop Bhattacharya, Alex Rosenberg, Derick R. Peterson, Katherine Grzesik, Andrea Baran, John M. Ashton, Steven R. Gill, Anthony Corbett, Jeanne Holden‐Wiltse, David J. Topham, Edward E. Walsh, Thomas J. Mariani, Ann R. Falsey
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-46462-8

HLA class II-Restricted CD8+ T cells in HIV-1 Virus Controllers
Cited by: 5
Author(s): Tinashe Nyanhete, Alyse Frisbee, Todd Bradley, William J. Faison, Elizabeth Robins, Tamika L. Payne, Stephanie A. Freel, Sheetal Sawant, Kent J. Weinhold, Kevin Wiehe, Barton F. Haynes, Guido Ferrari, Qi-Jing Li, M. Anthony Moody, Georgia D. Tomaras
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-49812-8

Mining MYB transcription factors from the genomes of orchids (Phalaenopsis and Dendrobium) and characterization of an orchid R2R3-MYB gene involved in water-soluble polysaccharide biosynthesis
Cited by: 24
Author(s): Chunmei He, Jaime A. Teixeira da Silva, Haobin Wang, Can Si, Mingze Zhang, Xiaoming Zhang, Mingzhi Li, Jian‐Wen Tan, Jun Duan
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-50561-x

RNA Sequencing revealed differentially expressed genes functionally associated with immunity and tumor suppression during latent phase infection of a vv + MDV in chickens
Cited by: 0
Author(s): Kunzhe Dong, Shuang Chang, Qingmei Xie, Peng Zhao, Huanmin Zhang
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-50970-y

Static magnetic field regulates Arabidopsis root growth via auxin signaling
Cited by: 26
Author(s): Yue Jin, Wei Guo, Xupeng Hu, Mengmeng Liu, Xiang Xu, Fenhong Hu, Yiheng Lan, Chenkai Lv, Yanwen Fang, Mengyu Liu, Tieliu Shi, Shisong Ma, Zhicai Fang, Jirong Huang
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-51046-7

Global gene expression analysis of Escherichia coli K-12 DH5α after exposure to 2.4 GHz wireless fidelity radiation
Cited by: 13
Author(s): Ilham Said-Salman, Fatima A. Jebaii, Hoda Yusef, Mohamed E. Moustafa
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-51911-5

Differentiation of Induced Pluripotent Stem Cells towards Mesenchymal Stromal Cells is Hampered by Culture in 3D Hydrogels
Cited by: 20
Author(s): Roman Goetzke, Hans Keijdener, Julia Franzen, Alina Ostrowska, Selina Nüchtern, Petra Mela, Wolfgang Wagner
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-52374-4

Gene expression profile analysis of ileum transcriptomes in pigs fed Gelsemium elegans plants
Cited by: 1
Author(s): Chong-Yin Huang, Kun Yang, Junsheng Cao, Yujuan Li, Ziyuan Wang, Hui Yu, Zhi-Liang Sun, Xiaofeng Zheng, Zhao‐Ying Liu
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-52222-5

Mapping quantitative trait loci for yield-related traits and predicting candidate genes for grain weight in maize
Cited by: 11
Author(s): Yanming Zhao, Chengfu Su
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-53959-9

Transcriptional profiling reveals differentially expressed genes involved in lipid biosynthesis during cacao seed development
Cited by: 2
Author(s): Fupeng Li, Binhe Wu, Yan Lin, Chaoyun Hao, Xiaowei Qin, Jianxiong Lai, Yinghui Song
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54083-4

Peripheral blood mononuclear cell transcriptomes reveal an over-representation of down-regulated genes associated with immunity in HIV-exposed uninfected infants
Cited by: 7
Author(s): Zaneta D. Musimbi, Martin K. Rono, James R. Otieno, Nelson Kibinge, Lynette Isabella Ochola‐Oyier, Etienne P. de Villiers, Eunice Nduati
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54475-6

LIN28B affects gene expression at the hypothalamic-pituitary axis and serum testosterone levels
Cited by: 5
Author(s): Jaakko T. Leinonen, Yu‐Chia Chen, Jana Pennonen, Leevi Lehtonen, Nella Junna, Taru Tukiainen, Pertti Panula, Elisabeth Widén
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-54055-8

Changes in meta-transcriptome of rumen epimural microbial community and liver transcriptome in young calves with feed induced acidosis
Cited by: 5
Author(s): Wenli Li, S.L. Gelsinger, Andrea Edwards, Christina Riehle, Daniel C. Koch
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56451-6

Transcriptome analysis in roots and leaves of wheat seedlings in response to low-phosphorus stress
Cited by: 57
Author(s): Jun Wang, Qin Qin, Jianjun Pan, Lijuan Sun, Yuchun Sun, Yong Xue, Ke Song
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56575-9

Proline improves switchgrass growth and development by reduced lignin biosynthesis
Cited by: 17
Author(s): Cong Guan, Huifang Cen, Xili Cui, Danyang Tian, Dimiru Tadesse, Yunwei Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56509-5

Deep sequencing and automated histochemistry of human tissue slice cultures improve their usability as preclinical model for cancer research
Cited by: 6
Author(s): Susann Haehnel, Kristin Reiche, Dennis Loeffler, Andreas Horn, Conny Blumert, Sven-Holger Puppel, Nicole Kaiser, Felicitas Rapp, Michael Rade, Friedemann Horn, Juergen Meixensberger, Ingo Bechmann, Frank Gaunitz, Karsten Winter
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-56566-w

Transcriptome-wide analysis of the SCNT bovine abnormal placenta during mid- to late gestation
Cited by: 8
Author(s): Guang Gao, Shenyuan Wang, Jiaqi Zhang, Guanghua Su, Zhong Zheng, Chunling Bai, Lei Yang, Zhuying Wei, Xiuying Wang, Lanbo Xiao, Ziru Guo, Guangpeng Li, Xianwei Su, Li Zhang
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-020-57786-1

Response of the Salmon Heart Transcriptome to Pancreas Disease: Differences Between High- and Low-Ranking Families for Resistance
Cited by: 10
Author(s): Nick Robinson, Aleksei Krasnov, Erik Burgerhout, Hanne Johnsen, Hooman K. Moghadam, Borghild Hillestad, Muhammad Luqman Aslam, Matthew Baranski, Solomon Antwi Boison
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58995-4

Biologically Aggressive Phenotype and Anti-cancer Immunity Counterbalance in Breast Cancer with High Mutation Rate
Cited by: 64
Author(s): Hideo Takahashi, Mariko Asaoka, Li Yan, Omar M. Rashid, Masanori Oshi, Takashi Ishikawa, Masayuki Nagahashi, Kazuaki Takabe
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-59163-4

Chronic irradiation of human cells reduces histone levels and deregulates gene expression
Cited by: 17
Author(s): Donna Lowe, Mareike Herzog, Thorsten Mosler, Howard A. Cohen, Sarah Felton, Petra Beli, Ken Raj, Yaron Galanty, Stephen Jackson
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63023-6

Skin transcriptome profiling of Changthangi goats highlights the relevance of genes involved in Pashmina production
Cited by: 17
Author(s): Sonika Ahlawat, Reena Arora, Rekha Sharma, Upasna Sharma, Manpreet Kaur, Ashok Kumar, Kritika Singh, Manoj Kumar Singh, R. K. Vijh
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-62974-0

HMGA1-pseudogene7 transgenic mice develop B cell lymphomas
Cited by: 10
Author(s): Marco De Martino, Davide De Biase, Floriana Forzati, Sara Carmela Credendino, Giuseppe Palma, Antônio Barbieri, Claudio Arra, Orlando Paciello, Eugenio Gaudio, Maurilio Ponzoni, Gabriella De Vita, Paolo Chieffi, Francesco Bertoni, Alfredo Fusco, Francesco Esposito
Software Mentions: 2
Published: over 6 years ago

Projects: pypi: HTSeq

Science Score: 65/100

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Papers Mentioning HTSeq 3,071