pypi: HTSeq | Projects | Ecosyste.ms: Papers

10.3389/fphys.2021.562817

Single-Cell RNA Sequencing Analysis of Chicken Anterior Pituitary: A Bird’s-Eye View on Vertebrate Pituitary
Cited by: 11
Author(s): Jiannan Zhang, Can Lv, Chunheng Mo, Meng Li, Ying Wan, Juan Li, Yajun Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2016.01255

Photosynthate Regulation of the Root System Architecture Mediated by the Heterotrimeric G Protein Complex in Arabidopsis
Cited by: 28
Author(s): Yashwanti Mudgil, Abhijit Karve, Paulo José Pereira Lima Teixeira, Kun Jiang, Meral Tunc‐Ozdemir, Alan M. Jones
Software Mentions: 3
Published: about 10 years ago

10.3389/fpls.2017.00362

Transcriptome Analysis of the Melon-Fusarium oxysporum f. sp. melonis Race 1.2 Pathosystem in Susceptible and Resistant Plants
Cited by: 28
Author(s): Maria Silvia Sebastiani, Paolo Bagnaresi, S. Sestili, Chiara Biselli, Antonella Zechini, Luigi Orrù, Luigi Cattivelli, N. Ficcadenti
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2021.686121

Extracellular Fragmented Self-DNA Is Involved in Plant Responses to Biotic Stress
Cited by: 10
Author(s): Francesca Barbero, Michela Guglielmotto, Monirul Islam, Massimo E. Maffei
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2018.01486

WRKY Transcription Factors Associated With NPR1-Mediated Acquired Resistance in Barley Are Potential Resources to Improve Wheat Resistance to Puccinia triticina
Cited by: 26
Author(s): Jing Gao, Weishuai Bi, Huanpeng Li, Jiaojiao Wu, Xiaoyan Yu, Daqun Liu, Xiaodong Wang
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2018.00314

The Role of Programmed Cell Death Regulator LSD1 in Nematode-Induced Syncytium Formation
Cited by: 12
Author(s): Mateusz Matuszkiewicz, Mirosław Sobczak, Javier Cabrera, Carolina Escobar, Stanisław Karpiński, Marcin Filipecki
Software Mentions: 3
Published: over 8 years ago

10.3389/fpls.2018.00034

Transcriptomic and Functional Analyses Reveal That PpGLK1 Regulates Chloroplast Development in Peach (Prunus persica)
Cited by: 22
Author(s): Min Chen, Xiao Liu, Shenghui Jiang, Binbin Wen, Chunrong Yang, Wei Xiao, Xiling Fu, Dongmei Li, Xiude Chen, Dongsheng Gao, Ling Li
Software Mentions: 3
Published: almost 9 years ago

10.3389/fpls.2016.00933

Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance
Cited by: 45
Author(s): Yunsheng Wang, Lijuan Zhou, Xiaoyue Yu, Ed Stover, Feng Luo, Yongping Duan
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2020.525102

The Eruca sativa Genome and Transcriptome: A Targeted Analysis of Sulfur Metabolism and Glucosinolate Biosynthesis Pre and Postharvest
Cited by: 11
Author(s): Luke Bell, Martin J. Chadwick, Manik Puranik, Richard Tudor, Lisa Methven, Sue Kennedy, Carol Wagstaff
Software Mentions: 3
Published: about 6 years ago

10.3389/fpls.2020.00076

Transcriptome Analysis Identifies Two Ethylene Response Factors That Regulate Proanthocyanidin Biosynthesis During Malus Crabapple Fruit Development
Cited by: 12
Author(s): Hua Li, Mingzheng Han, Lujia Yu, Sifan Wang, Jie Zhang, Ji Tian
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2018.01147

Making a Better Home: Modulation of Plant Defensive Response by Brevipalpus Mites
Cited by: 19
Author(s): Gabriella Dias Arena, Pedro Luis Ramos-González, Luana Aparecida Rogerio, Marcelo Ribeiro-Alves, Clare L. Casteel, Juliana Freitas-Astúa, Marcos Antônio Machado
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2020.00192

Comparative Transcriptome Analysis Provides Insights Into Yellow Rind Formation and Preliminary Mapping of the Clyr (Yellow Rind) Gene in Watermelon
Cited by: 13
Author(s): Dongming Liu, Huihui Yang, Yuxiang Yuan, Huayu Zhu, Minjuan Zhang, Xiaochun Wei, Dongling Sun, Xiaojuan Wang, Shichao Yang, Luming Yang
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2018.00500

Molecular Mechanisms of Acclimatization to Phosphorus Starvation and Recovery Underlying Full-Length Transcriptome Profiling in Barley (Hordeum vulgare L.)
Cited by: 54
Author(s): Ping Ren, Yali Meng, Baochun Li, Xiao Ma, Erjing Si, Yong Lai, Juncheng Wang, Lirong Yao, Ke Yang, Xianwen Shang, Huajun Wang
Software Mentions: 3
Published: over 8 years ago

10.3389/fpsyt.2021.649494

Monocyte Transcriptional Profiling Highlights a Shift in Immune Signatures Over the Course of Illness in Schizophrenia
Cited by: 4
Author(s): Jennifer K. Melbourne, Cherise Rosen, Kayla A. Chase, Benjamin Feiner, Rajiv P. Sharma
Software Mentions: 3
Published: over 5 years ago

10.3389/fsurg.2020.00059

The One Health Consortium: Design of a Phase I Clinical Trial to Evaluate M032, a Genetically Engineered HSV-1 Expressing IL-12, in Combination With a Checkpoint Inhibitor in Canine Patients With Sporadic High Grade Gliomas
Cited by: 4
Author(s): M. R. Chambers, R. Timothy Bentley, David K. Crossman, Jeremy B. Foote, Jey W. Koehler, James M. Markert, Nidal B. Omar, Simon Platt, D. Mitchell Self, Andy Shores, Donald C. Sorjonen, Alicia M. Waters, Amy B. Yanke, G. Yancey Gillespie
Software Mentions: 3
Published: about 6 years ago

10.1534/g3.114.015578

Maternal Germline-Specific Genes in the Asian Malaria Mosquito Anopheles stephensi: Characterization and Application for Disease Control
Cited by: 13
Author(s): James K. Biedler, Yumin Qi, David Pledger, Vanessa M. Macias, Anthony A. James, Zhijian Tu
Software Mentions: 3
Published: almost 12 years ago

10.1534/g3.115.026666

The HIST1 Locus Escapes Reprogramming in Cloned Bovine Embryos
Cited by: 5
Author(s): Byungkuk Min, Sunwha Cho, Jung Sun Park, Kyuheum Jeon, Yong‐Kook Kang
Software Mentions: 3
Published: over 10 years ago

10.1534/g3.116.033225

A Splice Defect in the EDA Gene in Dogs with an X-Linked Hypohidrotic Ectodermal Dysplasia (XLHED) Phenotype
Cited by: 17
Author(s): Dominik P. Waluk, Gila Zur, Ronnie Kaufmann, Monika Maria Welle, Vidhya Jagannathan, Cord Drögemüller, Eliane J. Müller, Tosso Leeb, Arnaud Galichet
Software Mentions: 3
Published: about 10 years ago

10.1534/g3.116.034595

Obp56hModulates Mating Behavior inDrosophila melanogaster
Cited by: 21
Author(s): John R. Shorter, Lauren M. Dembeck, Logan J. Everett, Tatiana V. Morozova, Gunjan H. Arya, Lavanya Turlapati, Genevieve E. St. Armour, Coby Schal, Trudy F. C. Mackay, Robert R. H. Anholt
Software Mentions: 3
Published: about 10 years ago

10.1534/g3.118.201012

Global Shifts in Gene Expression Profiles Accompanied with Environmental Changes in Cnidarian-Dinoflagellate Endosymbiosis
Cited by: 8
Author(s): Yuu Ishii, Shinichiro Maruyama, Hiroshi Takahashi, Yoko Aihara, Takeshi Yamaguchi, Katsushi Yamaguchi, Shuji Shigenobu, Masakado Kawata, Naoto Ueno, Jun Minagawa
Software Mentions: 3
Published: over 7 years ago

10.1534/g3.119.400345

Next-Generation Sequencing Reveals Increased Anti-oxidant Response and Ecdysone Signaling in STAT Supercompetitors in Drosophila
Cited by: 2
Author(s): Poojitha Sitaram, Sean Lu, Sneh Harsh, Salvador C. Herrera, Erika A. Bach
Software Mentions: 3
Published: over 7 years ago

10.1534/g3.119.400347

Genome-Wide Association and Gene Co-expression Network Analyses Reveal Complex Genetics of Resistance to Goss’s Wilt of Maize
Cited by: 2
Author(s): Amritpal Singh, Guangyong Li, Alex B. Brohammer, Diego Jarquín, Candice N. Hirsch, James R. Alfano, Aaron J. Lorenz
Software Mentions: 3
Published: about 7 years ago

10.1534/g3.119.400669

Molecular Profiling of theDrosophilaAntenna Reveals Conserved Genes Underlying Olfaction in Insects
Cited by: 24
Author(s): Pratyajit Mohapatra, Karen Menuz
Software Mentions: 3
Published: about 7 years ago

10.1534/g3.119.400431

Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize
Cited by: 25
Author(s): Sarah N. Anderson, Michelle C. Stitzer, Peng Zhou, Jeffrey Ross‐Ibarra, Cory D. Hirsch, Nathan M. Springer
Software Mentions: 3
Published: about 7 years ago

10.3382/ps/pez354

Transcriptomic analysis of early B-cell development in the chicken embryo
Cited by: 6
Author(s): Nikhil Nuthalapati, J. D. Evans, Robert L. Taylor, S. L. Branton, Bindu Nanduri, G. T. Pharr
Software Mentions: 3
Published: about 7 years ago

10.1073/pnas.2005536117

Molecular causes of an evolutionary shift along the parasitism–mutualism continuum in a bacterial symbiont
Cited by: 12
Author(s): Paul Herrera, Lisa N Schuster, Cécilia Wentrup, Lena König, Thomas Kempinger, Hyunsoo Na, Jasmin Schwarz, Stephan Köstlbacher, Florian Wascher, Markus Zojer, Thomas Rattei, Matthias Horn
Software Mentions: 3
Published: about 6 years ago

10.1186/s12958-017-0319-5

Integration analysis of microRNA and mRNA paired expression profiling identifies deregulated microRNA-transcription factor-gene regulatory networks in ovarian endometriosis
Cited by: 53
Author(s): Lei Zhao, Chenglei Gu, Mingxia Ye, Zhe Zhang, Lian Li, Wensheng Fan, Yuanguang Meng
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12931-019-0981-6

Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation
Cited by: 14
Author(s): Joshua A. Englert, Michael H. Cho, Andrew Lamb, Maya Shumyatcher, Diana Barragan-Bradford, Maria C. Basil, Angelica Higuera, Colleen Isabelle, Mayra Pinilla Vera, Paul B. Dieffenbach, Laura E. Fredenburgh, Joyce B. Kang, Ami S. Bhatt, Joseph H. Antin, Vincent T. Ho, Robert J. Soiffer, Judie A. Howrylak, Blanca E. Himes, Rebecca M. Baron
Software Mentions: 3
Published: almost 8 years ago

10.1126/sciadv.abc4493

Regeneration of the pulmonary vascular endothelium after viral pneumonia requires COUP-TF2
Cited by: 25
Author(s): Gan Zhao, Aaron I. Weiner, Katherine M. Neupauer, Maria Fernanda de Mello Costa, Gargi Palashikar, Stephanie Adams-Tzivelekidis, Nilam S. Mangalmurti, Andrew E. Vaughan
Software Mentions: 3
Published: almost 6 years ago

10.1126/sciadv.abi6896

Gene therapy with AR isoform 2 rescues spinal and bulbar muscular atrophy phenotype by modulating AR transcriptional activity
Cited by: 18
Author(s): Wooi Fang Lim, Mitra Forouhan, Thomas C. Roberts, Jesse Dabney, Ruth Ellerington, Alfina A Speciale, Raquel Manzano, Maria Lieto, Gina Sangha, Subhashis Banerjee, Mariana Conceição, Lara Cravo, Annabelle Biscans, Loïc Roux, Naemeh Pourshafie, Christopher Grunseich, Stéphanie Duguez, Anastasia Khvorova, Maria Pennuto, Constanza J. Cortés, Albert R. La Spada, Kenneth H. Fischbeck, Matthew J. Wood, Pasquale Striano
Software Mentions: 3
Published: about 5 years ago

10.1038/sdata.2016.19

Genome-scale DNA methylome and transcriptome profiling of human neutrophils
Cited by: 17
Author(s): Aniruddha Chatterjee, Peter A. Stockwell, Euan J. Rodger, Ian M. Morison
Software Mentions: 3
Published: over 10 years ago

10.1038/sdata.2017.118

A gene expression atlas of adult Schistosoma mansoni and their gonads
Cited by: 44
Author(s): Zhigang Lu, Florian Sessler, Nancy Holroyd, Steffen Hahnel, Thomas Quack, Matthew Berriman, Christoph G. Grevelding
Software Mentions: 3
Published: about 9 years ago

10.1038/s41597-019-0140-4

Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean
Cited by: 11
Author(s): Surendra Neupane, Febina M. Mathew, Adam J. Varenhorst, Madhav P. Nepal
Software Mentions: 3
Published: over 7 years ago

10.1038/s41597-019-0162-y

Global tissue-specific transcriptome analysis of Citrus sinensis fruit across six developmental stages
Cited by: 12
Author(s): Guizhi Feng, Juxun Wu, Hualin Yi
Software Mentions: 3
Published: about 7 years ago

10.1038/s41597-019-0231-2

Comparative transcriptome profiling of immune response against Vibrio harveyi infection in Chinese tongue sole
Cited by: 17
Author(s): Hao Xu, Xiwen Xu, Xihong Li, Lei Wang, Jiayu Cheng, Qian Zhou, Songlin Chen
Software Mentions: 3
Published: about 7 years ago

10.1038/s41597-021-00890-2

An integrated landscape of protein expression in human cancer
Cited by: 32
Author(s): Andrew F. Jarnuczak, Hanna Najgebauer, Mitra Barzine, Deepti Jaiswal Kundu, Fatemeh Zamanzad Ghavidel, Yasset Perez‐Riverol, Irene Papatheodorou, Alvis Brāzma, Juan Antonio Vizcaíno
Software Mentions: 3
Published: over 5 years ago

10.1038/srep17328

Genome-wide DNA methylation map of human neutrophils reveals widespread inter-individual epigenetic variation
Cited by: 54
Author(s): Aniruddha Chatterjee, Peter A. Stockwell, Euan J. Rodger, Elizabeth J. Duncan, Matthew Parry, Robert J. Weeks, Ian M. Morison
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep18178

Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq
Cited by: 138
Author(s): Luís R. Saraiva, Ximena Ibarra-Soria, Mona Khan, Masayo Omura, Antonio Scialdone, Peter Mombaerts, John C. Marioni, Darren W. Logan
Software Mentions: 3
Published: almost 11 years ago

10.1038/srep24964

Altered microRNA expression and pre-mRNA splicing events reveal new mechanisms associated with early stage Mycobacterium avium subspecies paratuberculosis infection
Cited by: 34
Author(s): Guanxiang Liang, Nilusha Malmuthuge, Yongjuan Guan, Yan Ren, Philip Griebel, Le Luo Guan
Software Mentions: 3
Published: over 10 years ago

10.1038/srep25619

Integrative analysis of extracellular and intracellular bladder cancer cell line proteome with transcriptome: improving coverage and validity of –omics findings
Cited by: 12
Author(s): Agnieszka Latosinska, Manousos Makridakis, Maria Frantzi, Daniel Borràs, Bart Janssen, William Mullen, Jérôme Zoidakis, Axel S. Merseburger, Vera Jankowski, Harald Mischak, Antonia Vlahou
Software Mentions: 3
Published: over 10 years ago

10.1038/srep26114

Comparative analysis of the integument transcriptomes of the black dilute mutant and the wild-type silkworm Bombyx mori
Cited by: 17
Author(s): Songyuan Wu, Xiaoling Tong, Chenxing Peng, Xiong Guan, Kunpeng Lu, Hai Hu, Tan D, Chunlin Li, Minjin Han, Cheng Lü, Fangyin Dai
Software Mentions: 3
Published: over 10 years ago

10.1038/srep26942

Hyperlipidemia-associated gene variations and expression patterns revealed by whole-genome and transcriptome sequencing of rabbit models
Cited by: 23
Author(s): Zhen Wang, Jifeng Zhang, Hong Li, Junyi Li, Manabu Niimi, Guohui Ding, Haifeng Chen, Jie Xu, Hongjiu Zhang, Ze Xu, Yulin Dai, Tuantuan Gui, Shengdi Li, Zhi Li, Sujuan Wu, Mushui Cao, Lu Zhou, Xingyu Lu, Junxia Wang, Jing Yang, Yunhe Fu, Dongshan Yang, Jun Song, Tianqing Zhu, Ли Шен, Bo Niu, Ziyun Wang, Tomonari Koike, Masashi Shiomi, Enqi Liu, Luonan Chen, Jianglin Fan, Y. Eugene Chen, Yixue Li
Software Mentions: 3
Published: over 10 years ago

10.1038/srep27043

Differences in DNA Repair Capacity, Cell Death and Transcriptional Response after Irradiation between a Radiosensitive and a Radioresistant Cell Line
Cited by: 33
Author(s): Mireia Borràs-Fresneda, Joan Francesc Barquinero, Maria Gomolka, Sabine Hornhardt, Ute Rößler, Gemma Armengol, Leonardo Barrios
Software Mentions: 3
Published: over 10 years ago

10.1038/srep26813

RNA-Seq reveals 10 novel promising candidate genes affecting milk protein concentration in the Chinese Holstein population
Cited by: 59
Author(s): Cong Li, Wentao Cai, Chixing Zhou, Hongwei Yin, Ziqi Zhang, Juan J. Loor, Dongxiao Sun, Qin Zhang, Jianfeng Liu, Shengli Zhang
Software Mentions: 3
Published: over 10 years ago

10.1038/srep31150

Schistosome sex matters: a deep view into gonad-specific and pairing-dependent transcriptomes reveals a complex gender interplay
Cited by: 99
Author(s): Zhigang Lu, Florian Sessler, Nancy Holroyd, Steffen Hahnel, Thomas Quack, Matthew Berriman, Christoph G. Grevelding
Software Mentions: 3
Published: over 10 years ago

10.1038/srep31014

The CD4+ T cell methylome contributes to a distinct CD4+ T cell transcriptional signature in Mycobacterium bovis-infected cattle
Cited by: 20
Author(s): Rachael Doherty, Ronan Whiston, Paul Cormican, Emma K. Finlay, Christine Couldrey, Christopher S. Brady, Cliona O’Farrelly, Kieran G. Meade
Software Mentions: 3
Published: over 10 years ago

10.1038/srep33296

Global analysis of differential gene expression related to long-term sperm storage in oviduct of Chinese Soft-Shelled Turtle Pelodiscus sinensis
Cited by: 23
Author(s): Tengfei Liu, Ping Yang, Hong Chen, Yufei Huang, Yi Liu, Yasir Waqas, Nisar Ahmed, Xia Chu, Qiusheng Chen
Software Mentions: 3
Published: about 10 years ago

10.1038/srep40049

The molecular sensory machinery of a Chagas disease vector: expression changes through imaginal moult and sexually dimorphic features
Cited by: 41
Author(s): José Manuel Latorre-Estivalis, Hugh M. Robertson, Kimberly K. O. Walden, Jerônimo C. Ruiz, Leilane Oliveira Gonçalves, Alessandra A. Guarneri, Marcelo G. Lorenzo
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-017-02096-2

Plasmacytoid dendritic cells appear inactive during sub-microscopic Plasmodium falciparum blood-stage infection, yet retain their ability to respond to TLR stimulation
Cited by: 22
Author(s): Jessica R. Loughland, Gabriela Minigo, Derek S. Sarovich, Matthew A. Field, Peta Tipping, Marcela Montes de, Kim A. Piera, Fiona H. Amante, Bridget E. Barber, Matthew J. Grigg, Timothy William, Michael F. Good, Denise L. Doolan, Christian Engwerda, Nicholas M. Anstey, James S. McCarthy, Tonia Woodberry
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-02824-8

High-resolution promoter map of human limbal epithelial cells cultured with keratinocyte growth factor and rho kinase inhibitor
Cited by: 8
Author(s): Masahito Yoshihara, Yuzuru Sasamoto, Ryuhei Hayashi, Yuki Ishikawa, Motokazu Tsujikawa, Yoshihide Hayashizaki, Masayoshi Itoh, Hideya Kawaji, Kohji Nishida
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-04006-y

Characterization of slow cycling corneal limbal epithelial cells identifies putative stem cell markers
Cited by: 35
Author(s): Rachel Sartaj, Chao Zhang, Wan Park, Zeeshan Pasha, Victor H. Guaiquil, A. Liu, J. Liu, Yu Luo, Elaine Fuchs, Mark I. Rosenblatt
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-04370-9

A cross-species approach to identify transcriptional regulators exemplified for Dnajc22 and Hnf4a
Cited by: 2
Author(s): Anna C. Aschenbrenner, Kevin Baßler, Mirco Brondolin, Lorenzo Bonaguro, Pilar Carrera, Kathrin Klee, Thomas Ulas, Joachim L. Schultze, Michael Hoch
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-04786-3

sRNA and cis-antisense sRNA identification in Staphylococcus aureus highlights an unusual sRNA gene cluster with one encoding a secreted peptide
Cited by: 25
Author(s): Julie Bronsard, Gaëtan Pascreau, Mohamed Sassi, Tony Mauro, Yoann Augagneur, Brice Felden
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-05780-5

Genome-wide RNA-Sequencing analysis identifies a distinct fibrosis gene signature in the conjunctiva after glaucoma surgery
Cited by: 16
Author(s): Cynthia Yu‐Wai‐Man, Nicholas Owen, Jonathan G. Lees, Aristides D. Tagalakis, Stephen L. Hart, Andrew R. Webster, Christine A. Orengo, PT Khaw
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-04426-w

A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA
Cited by: 188
Author(s): Blue B. Lake, Simone Codeluppi, Yun C. Yung, Derek Gao, Jerold Chun, Peter V. Kharchenko, Sten Linnarsson, Kun Zhang
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-019-50618-x

Comparisons of lung and gluteus transcriptome profiles between yaks at different ages
Cited by: 1
Author(s): Jinwei Xin, Zhixin Chai, Chengfu Zhang, Qiang Zhang, Yong Zhu, Hanwen Cao, Qiumei Ji, Jincheng Zhong
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-019-51535-9

Transcriptomic analysis reveals potential genes involved in tanshinone biosynthesis in Salvia miltiorrhiza
Cited by: 29
Author(s): Yuan‐Jen Chang, Meizhen Wang, Jiang Li, Shanfa Lu
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-020-60656-5

Genomic alterations and abnormal expression of APE2 in multiple cancers
Cited by: 20
Author(s): Katherine A. Jensen, Xinghua Shi, Yan Shen Shan
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-61305-7

Root transcriptome reveals efficient cell signaling and energy conservation key to aluminum toxicity tolerance in acidic soil adapted rice genotype
Cited by: 12
Author(s): Wricha Tyagi, Julia S. Yumnam, Debashish Sen, Mayank Rai
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-62150-4

Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions
Cited by: 15
Author(s): Abbot O. Oghenekaro, Andriy Kovalchuk, Tommaso Raffaello, Susana Camarero, Markus Gressler, Bernard Henrissat, Juna Lee, Mengxia Liu, Ángel T. Martı́nez, Otto Miettinen, Sirma Mihaltcheva, Jasmyn Pangilinan, Fei Ren, Robert Riley, Francisco J. Ruiz‐Dueñas, Ana Serrano, Michael R. Thon, Zilan Wen, Zhen Zeng, Kerrie Barry, I. V. Grigoriev, Francis Martin, Fred O. Asiegbu
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-65593-x

Detrimental effects of flame retardant, PBB153, exposure on sperm and future generations
Cited by: 29
Author(s): Katherine W. Greeson, Kristen L. Fowler, Paige M. Estave, S. Kate Thompson, Chelsea Wagner, R. Clayton Edenfield, Krista Maye Symosko, Alyse N. Steves, M. Elizabeth Marder, Metrecia L. Terrell, Hillary Barton, Michael Koval, Michele Marcus, Charles A. Easley
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-66988-6

A Transcriptome Analysis Reveals that Hepatic Glycolysis and Lipid Synthesis Are Negatively Associated with Feed Efficiency in DLY Pigs
Cited by: 8
Author(s): Cineng Xu, Xingwang Wang, Zhanwei Zhuang, Jie Wu, Shenping Zhou, Jianping Quan, Rongrong Ding, Yong Ye, Longlong Peng, Zhenfang Wu, Enqin Zheng, Jie Yang
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-68187-9

Prostate cancer-derived holoclones: a novel and effective model for evaluating cancer stemness
Cited by: 9
Author(s): Louise Flynn, Martin P. Barr, Anne‐Marie Baird, Paul Smyth, Órla Casey, Gordon Blackshields, John Greene, Stephen R. Pennington, Emily Hams, Padraic G. Fallon, John O’Leary, Orla Sheils, Stephen Finn
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-68437-w

Injection of seminal fluid into the hemocoel of honey bee queens (Apis mellifera) can stimulate post-mating changes
Cited by: 9
Author(s): W. Cameron Jasper, Laura M. Brutscher, Christina M. Grozinger, Elina L. Niño
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-69179-5

Regulation of MYO18B mRNA by a network of C19MC miRNA-520G, IFN-γ, CEBPB, p53 and bFGF in hepatocellular carcinoma
Cited by: 9
Author(s): Goodwin G. Jinesh, Marco Napoli, Hayley D. Ackerman, Payal Raulji, Nicole Montey, Elsa R. Flores, Andrew S. Brohl
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-69884-1

Selective dysregulation of ROCK2 activity promotes aberrant transcriptional networks in ABC diffuse large B-cell lymphoma
Cited by: 4
Author(s): Edd Ricker, Akanksha Verma, Rossella Marullo, Sanjay Gupta, Chao Ye, Tania Pannellini, Michela Manni, Wayne Tam, Giorgio Inghirami, Olivier Elemento, Leandro Cerchietti, Alessandra B. Pernis
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-70248-y

Transcriptome sequencing supports a conservation of macrophage polarization in fish
Cited by: 24
Author(s): Annelieke S. Wentzel, Jules Petit, Wouter G. van Veen, I.R. Fink, Marleen Scheer, M. Carla Piazzon, Maria Forlenza, Herman P. Spaink, G.F. Wiegertjes
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-74051-7

Integrative transcriptomic analysis for linking acute stress responses to squamous cell carcinoma development
Cited by: 4
Author(s): Tran Nguyen, Kimal Rajapakshe, Courtney Nicholas, Leticia Tordesillas, Erik A. Ehli, Christel M. Davis, Cristian Coarfa, Elsa R. Flores, Sally E. Dickinson, Clara Curiel‐Lewandrowski, Kenneth Y. Tsai
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-75438-2

Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivo
Cited by: 30
Author(s): Josie B. Garner, Amanda J. Chamberlain, Christy Vander Jagt, Thuy Thi Thu Nguyen, Brett Mason, L. C. Marett, Brian J Leury, William J. Wales, Ben J. Hayes
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-77178-9

LOXL2 promotes aggrecan and gender-specific anabolic differences to TMJ cartilage
Cited by: 7
Author(s): Mustafa Tashkandi, Saqer F. Alsaqer, Thabet Alhousami, Faiza Ali, Yaotang Wu, Jennifer Shin, Pushkar Mehra, Larry M. Wolford, Louis C. Gerstenfeld, Mary B. Goldring, Manish V. Bais
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-79082-8

Human extrahepatic and intrahepatic cholangiocyte organoids show region-specific differentiation potential and model cystic fibrosis-related bile duct disease
Cited by: 37
Author(s): Monique M A Verstegen, Floris J.M. Roos, Ksenia Burka, Helmuth Gehart, Myrthe Jager, Maaike de Wolf, Marcel J. C. Bijvelds, Hugo R. de Jonge, Arif Ibrahim Ardisasmita, Nick A. van Huizen, Henk P. Roest, Jeroen de Jonge, Michael Koch, Francesco Pampaloni, Sabine A. Fuchs, Imre F. Schene, Theo M. Luider, Hubert P.J. van der Doef, Frank Bodewes, Ruben H J de Kleine, Bart Spee, Gert‐Jan Kremers, Hans Clevers, Jan N. M. IJzermans, Edwin Cuppen, Luc J. W. van der Laan
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-80168-6

Global tissue transcriptomic analysis to improve genome annotation and unravel skin pigmentation in goldfish
Cited by: 14
Author(s): Wei Gan, Yu Wen Chung-Davidson, Zelin Chen, Shiying Song, Weicheng Cui, Wei He, Qinghua Zhang, Weiming Li, Mingyou Li, Jianfeng Ren
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-81611-y

Absence of S100A4 in the mouse lens induces an aberrant retina-specific differentiation program and cataract
Cited by: 3
Author(s): Rupalatha Maddala, Junyuan Gao, Richard T. Mathias, Tylor R. Lewis, Vadim Y. Arshavsky, Adriana Levine, Jonathan M. Backer, Anne R. Bresnick, Ponugoti Vasantha Rao
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-82905-x

Transcriptional response to the host cell environment of a multidrug-resistant Mycobacterium tuberculosis clonal outbreak Beijing strain reveals its pathogenic features
Cited by: 9
Author(s): Pakorn Aiewsakun, Pinidphon Prombutara, Tegar Adriansyah Putra Siregar, Thanida Laopanupong, Phongthon Kanjanasirirat, Tanawadee Khumpanied, Suparerk Borwornpinyo, Pirut Tong-ngam, Alisa Tubsuwan, Prapaporn Srilohasin, Angkana Chaiprasert, Wuthiwat Ruangchai, Prasit Palittapongarnpim, Therdsak Prammananan, Brian C. VanderVen, Marisa Ponpuak
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-83541-1

Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts
Cited by: 23
Author(s): Ammar Zaghlool, Adnan Niazi, Åsa K. Björklund, Jakub Orzechowski Westholm, Adam Ameur, Lars Feuk
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-84138-4

Transcriptome analysis of ciliary-dependent MCH signaling in differentiating 3T3-L1 pre-adipocytes
Cited by: 4
Author(s): Lloyd Allen Cook, Henry D. Ophardt, Rongkun Shen, Bryan H. Pratt, Lucas A. Galbier
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86795-x

Distinct transcriptomic response to Newcastle disease virus infection during heat stress in chicken tracheal epithelial tissue
Cited by: 2
Author(s): Perot Saelao, Ying Wang, Ganrea Chanthavixay, Vivian M. Yu, Rodrigo A. Gallardo, Jack C. M. Dekkers, Susan J. Lamont, T. Ross Kelly, Huaijun Zhou
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-87278-9

Analysis of the gene transcription patterns and DNA methylation characteristics of triploid sea cucumbers (Apostichopus japonicus)
Cited by: 8
Author(s): Lingshu Han, Yuena Sun, Yue Cao, Peng Gao, Zijiao Quan, Yaqing Chang, Jun Ding
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86612-5

Potential impact of celiac disease genetic risk factors on T cell receptor signaling in gluten-specific CD4+ T cells
Cited by: 4
Author(s): Olivier B. Bakker, Aarón D. Ramírez-Sánchez, Z Borek, Nigel Klein, Yang Li, Rutger Modderman, Yvonne Kooy–Winkelaar, Marie K. Johannesen, Filomena Matarese, Joost H.A. Martens, Vinod Kumar, Jeroen van Bergen, Shuo‐Wang Qiao, Knut E.A. Lundin, Ludvig M. Sollid, Frits Koning, Cisca Wijmenga, Sebo Withoff, Iris Jonkers
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-89175-7

Concurrent X chromosome inactivation and upregulation during non-human primate preimplantation development revealed by single-cell RNA-sequencing
Cited by: 2
Author(s): Ana Luíza Cidral, Joana Carvalho Moreira de Mello, Joost Gribnau, Lygia V. Pereira
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-91503-w

Colonisation dynamics of Listeria monocytogenes strains isolated from food production environments
Cited by: 12
Author(s): Jessica Gray, P. Scott Chandry, Mandeep Kaur, Chawalit Kocharunchitt, Séamus Fanning, John P. Bowman, Edward M. Fox
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-91811-1

Identifying molecular targets for reverse aging using integrated network analysis of transcriptomic and epigenomic changes during aging
Cited by: 7
Author(s): Hwang-Yeol Lee, Yeonsu Jeon, Yeon Kyung Kim, Jae Young Jang, Yun Sung Cho, Jong Bhak, Kwang-Hyun Cho
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-91924-7

Mutant p53s and chromosome 19 microRNA cluster overexpression regulate cancer testis antigen expression and cellular transformation in hepatocellular carcinoma
Cited by: 4
Author(s): Goodwin G. Jinesh, Marco Napoli, Marian T. Smallin, Andrew John Davis, Hayley D. Ackerman, Payal Raulji, Nicole Montey, Elsa R. Flores, Andrew S. Brohl
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-94386-z

An epigenetic GPI anchor defect impairs TLR4 signaling in the B cell transdifferentiation model for primary human monocytes BLaER1
Cited by: 3
Author(s): Julia Wegner, Thomas Zillinger, Thais Marina Schlee-Guimarães, Eva Bartok, Martin Schlee
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-96263-1

Dynamic landscape of chromatin accessibility and transcriptomic changes during differentiation of human embryonic stem cells into dopaminergic neurons
Cited by: 7
Author(s): César Meléndez-Ramírez, Raquel Cuevas-Diaz Duran, Tonatiuh Barrios-García, Mayela Giacoman-Lozano, Adolfo López-Ornelas, Jessica Herrera-Gamboa, Enrique Estudillo, Ernesto Soto-Reyes, Iván Velasco, Víctor Treviño
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-96374-9

Integrative genetic, genomic and transcriptomic analysis of heat shock protein and nuclear hormone receptor gene associations with spontaneous preterm birth
Cited by: 10
Author(s): Johanna M. Huusko, Heli Tiensuu, Antti M. Haapalainen, Anu Pasanen, Pinja Tissarinen, Minna K. Karjalainen, Ge Zhang, Kaare Christensen, Kelli K. Ryckman, Bo Jacobsson, Jeffrey C. Murray, Stephen F. Kingsmore, Mikko Hallman, Louis J. Muglia, Mika Rämet
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-97013-z

Electronic cigarette smoke reduces ribosomal protein gene expression to impair protein synthesis in primary human airway epithelial cells
Cited by: 5
Author(s): Hae-Ryung Park, Jose Vallarino, Michael J. O’Sullivan, Charlotte Wirth, Ronald Allan M Panganiban, Gabrielle Webb, Maya Shumyatcher, Blanca E. Himes, Jin‐Ah Park, David C. Christiani, Joseph G. Allen, Quan Lu
Software Mentions: 3
Published: about 5 years ago

10.18632/oncotarget.19557

cFLIP critically modulates apoptotic resistance in epithelial-to-mesenchymal transition
Cited by: 6
Author(s): Chandrasekhar Padmanabhan, Eric J. Rellinger, Jing Zhu, Hanbing An, Luke Woodbury, Dai H. Chung, Alex G. Waterson, Craig W. Lindsley, Anna L. Means, R. Daniel Beauchamp
Software Mentions: 3
Published: over 9 years ago

10.18632/oncotarget.25646

Collaborating genomic, transcriptomic and microbiomic alterations lead to canine extreme intestinal polyposis
Cited by: 16
Author(s): Jin Wang, Tianfang Wang, Micah A. Bishop, John F. Edwards, Hang Yin, Stephen Dalton, Laura K. Bryan, Shaying Zhao
Software Mentions: 3
Published: over 8 years ago

10.18632/oncotarget.25998

Bladder cancer detection by urinary extracellular vesicle mRNA analysis
Cited by: 21
Author(s): Taku Murakami, Cindy M. Yamamoto, Tomoshige Akino, Hiroshi Tanaka, Nobuyuki Fukuzawa, Hiroyoshi Suzuki, Takahiro Osawa, Takeshi Tsuji, Toshimori Seki, Hiroshi Harada
Software Mentions: 3
Published: about 8 years ago

10.18632/oncotarget.26326

Ewing sarcoma resistance to SP-2509 is not mediated through KDM1A/LSD1 mutation
Cited by: 11
Author(s): Kathleen I. Pishas, Stephen L. Lessnick
Software Mentions: 3
Published: almost 8 years ago

10.1002/path.5284

NR4A3 fusion proteins trigger an axon guidance switch that marks the difference between EWSR1 and TAF15 translocated extraskeletal myxoid chondrosarcomas
Cited by: 23
Author(s): Monica Brenca, Silvia Stacchiotti, Kelly Fassetta, Marta Sbaraglia, Milijana Janjusevic, Dominga Racanelli, Maurizio Polano, Sabrina Rossi, Silvia Brich, Gian Paolo Dagrada, Paola Collini, Chiara Colombo, Alessandro Gronchi, Annalisa Astolfi, Valentina Indio, Maria Abbondanza Pantaleo, Piero Picci, Paolo G. Casali, Angelo Paolo Dei Tos, Silvana Pilotti, Roberta Maestro
Software Mentions: 3
Published: over 7 years ago

10.1098/rsob.190141

Identification of a novel regulatory pathway for PPARα by RNA-seq characterization of the endothelial cell lipid peroxidative injury transcriptome
Cited by: 4
Author(s): Fangfang Dou, Beiling Wu, Sun Liang, Jiulin Chen, Te Liu, Zhihua Yu, Chuan Chen
Software Mentions: 3
Published: almost 7 years ago

10.1128/JVI.00969-19

Differentiation into an Effector Memory Phenotype Potentiates HIV-1 Latency Reversal in CD4+T Cells
Cited by: 67
Author(s): Deanna A. Kulpa, Aarthi Talla, Jessica H. Brehm, Susan Pereira Ribeiro, Sally Yuan, Anne-Gaelle Bebin-Blackwell, Michael D. Miller, Richard Barnard, Steven G. Deeks, Daria J. Hazuda, Nicolas Chomont, Rafick‐Pierre Sékaly
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12967-020-02417-6

Overview of distinct 5-methylcytosine profiles of messenger RNA in human hepatocellular carcinoma and paired adjacent non-tumor tissues
Cited by: 36
Author(s): Qiyao Zhang, Qingyuan Zheng, Xiao Yu, Yuting He, Wenzhi Guo
Software Mentions: 3
Published: over 6 years ago

10.1523/ENEURO.0229-21.2021

Photoreceptor cKO of OTX2 Enhances OTX2 Intercellular Transfer in the Retina and Causes Photophobia
Cited by: 5
Author(s): Pasquale Pensieri, Annabelle Mantilleri, Damien Plassard, Takahisa Furukawa, Kenneth L. Moya, Alain Prochiantz, Thomas Lamonerie
Software Mentions: 3
Published: about 5 years ago

10.1186/s12284-021-00474-z

RETRACTED ARTICLE: Light Harvesting-like Protein 3 Interacts with Phytoene Synthase and Is Necessary for Carotenoid and Chlorophyll Biosynthesis in Rice
Cited by: 0
Author(s): Yun Feng, Debatosh Das, Tao Song, Jianhua Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2021.580846

QTL-Seq and Transcriptome Analysis Disclose Major QTL and Candidate Genes Controlling Leaf Size in Sesame (Sesamum indicum L.)
Cited by: 12
Author(s): Sheng Chen, Shengnan Song, Rong Zhou, Donghua Li, Yuan Gao, Xianghua Cui, Xin Tang, Yanxin Zhang, Jinxing Tu, Xiurong Zhang, Linhai Wang
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-81784-6

Analyses of transcriptomes and the first complete genome of Leucocalocybe mongolica provide new insights into phylogenetic relationships and conservation
Cited by: 7
Author(s): Mingzheng Duan, Hongda Bao, Tolgor Bau
Software Mentions: 2
Published: almost 6 years ago

10.3389/fspor.2019.00041

Deficiency of Vgll2 Gene Alters the Gene Expression Profiling of Skeletal Muscle Subjected to Mechanical Overload
Cited by: 1
Author(s): Keisuke Hitachi, Hidehito Inagaki, Hiroki Kurahashi, Hitoshi Okada, Kunihiro Tsuchida, Masahiko Honda
Software Mentions: 2
Published: about 7 years ago

Projects: pypi: HTSeq

Science Score: 65/100

Bonuses:

Penalties:

Papers Mentioning HTSeq 3,071