Ecosyste.ms: Papers

10.1371/journal.pbio.3001053

Identification of 3′ UTR motifs required for mRNA localization to myelin sheaths in vivo
Cited by: 13
Author(s): Katie M. Yergert, Caleb A. Doll, Rebecca O’Rouke, Jacob H. Hines, Bruce Appel
Software Mentions: 10
Published: almost 4 years ago

10.1093/database/baz098

Progress in the study of genome size evolution in Asteraceae: analysis of the last update
Cited by: 14
Author(s): Daniel Vitales, P. Fernández, Teresa Garnatje, Sònia Garcia
Software Mentions: 8
Published: almost 6 years ago

10.1002/ece3.2853

Phylogeny and biogeography of the scaleless scale worm<i>Pisione</i>(Sigalionidae, Annelida)
Cited by: 5
Author(s): Brett C. Gonzalez, H. Cecilie B. Petersen, Maikon Di Domênico, Alejandro Martínez, Maickel Armenteros, Erik García‐Machado, Peter Rask Møller, Katrine Worsaae
Software Mentions: 6
Published: almost 8 years ago

10.1186/s43008-020-00036-w

Brassicaceous roots as an unexpected diversity hot-spot of helotialean endophytes
Cited by: 13
Author(s): Jose G. Maciá‐Vicente, Ondřej Koukol
Software Mentions: 6
Published: over 4 years ago

10.3390/s21113587

A Secure and Scalable Smart Home Gateway to Bridge Technology Fragmentation
Cited by: 3
Author(s): Ezequiel Simeoni, Eugenio Gaeta, Rebeca I. García-Betances, Dave Raggett, Alejandro Martín Medrano Gil, Diego F. Carvajal-Flores, Giuseppe Fico, María Fernanda Cabrera-Umpiérrez, María Teresa Arredondo
Software Mentions: 5
Published: over 3 years ago

10.1186/1752-0509-1-27

Non-linear dimensionality reduction of signaling networks
Cited by: 18
Author(s): Sergii Ivakhno, J. Douglas Armstrong
Software Mentions: 5
Published: over 17 years ago

10.1111/jbi.13746

Drivers of bromeliad leaf and floral bract variation across a latitudinal gradient in the Atlantic Forest
Cited by: 4
Author(s): Beatriz Neves, Camila Martini Zanella, Igor Musauer Kessous, Fernando Pérez Uribbe, Fabiano Salgueiro, Fernanda Bered, Alexandre Antonelli, Christine D. Bacon, Andrea Costa
Software Mentions: 5
Published: about 5 years ago

10.1186/s12862-015-0574-z

The Antarctic Circumpolar Current as a diversification trigger for deep-sea octocorals
Cited by: 28
Author(s): Luisa F. Dueñas, Dianne M. Tracey, Andrew J. Crawford, Thomas Wilke, Philip Alderslade, Juan A. Sánchez
Software Mentions: 5
Published: almost 9 years ago

10.1002/ece3.3233

Population structure of a widespread bat (<i>Tadarida brasiliensis</i>) in an island system
Cited by: 22
Author(s): Kelly A. Speer, Brandi Jo Petronio, Nancy B. Simmons, Rebecca Richey, Kristin Magrini, J. Angel Soto‐Centeno, David L. Reed
Software Mentions: 5
Published: over 7 years ago

10.3389/fdata.2020.00022

The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons
Cited by: 22
Author(s): Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah E. Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell
Software Mentions: 4
Published: over 4 years ago

10.1007/s00438-020-01735-0

Major latex protein-like encoding genes contribute to Rhizoctonia solani defense responses in sugar beet
Cited by: 16
Author(s): Louise Holmquist, Fredrik Dölfors, Johan Fogelqvist, Jonathan Cohn, Thomas Kraft, Christina Dixelius
Software Mentions: 4
Published: about 4 years ago

10.1111/imb.12585

Developmental expression and evolution of hexamerin and haemocyanin from <i>Folsomia candida</i> (Collembola)
Cited by: 3
Author(s): Yangyang Liang, Wei Xie, Yigang Luan
Software Mentions: 4
Published: over 5 years ago

10.1186/1476-4598-13-241

OvMark: a user-friendly system for the identification of prognostic biomarkers in publically available ovarian cancer gene expression datasets
Cited by: 22
Author(s): Stephen F. Madden, Colin Clarke, Britta K. Stordal, Mark Carey, Russell Broaddus, William M. Gallagher, John Crown, Gordon B. Mills, Bryan T. Hennessy
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12915-016-0332-8

The topology, structure and PE interaction of LITAF underpin a Charcot-Marie-Tooth disease type 1C
Cited by: 8
Author(s): Anita K. Ho, Jane L. Wagstaff, Paul T. Manna, Lena Wartosch, Seema Qamar, Elspeth F. Garman, Stefan Freund, Rhys Roberts
Software Mentions: 4
Published: about 8 years ago

10.3389/fcimb.2017.00227

Transcriptomic Profiling of High-Density Giardia Foci Encysting in the Murine Proximal Intestine
Cited by: 32
Author(s): Jonathan K Pham, Christopher Nosala, Elaine P. Scott, Kristofer Nguyen, Kari D. Hagen, Hannah Starcevich, Scott C. Dawson
Software Mentions: 4
Published: over 7 years ago

10.3390/s19224905

Microservice Security Agent Based On API Gateway in Edge Computing
Cited by: 24
Author(s): Rongxu Xu, Wenquan Jin, Do‐Hyeun Kim
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2018.02361

Bacterial Associates of a Gregarious Riparian Beetle With Explosive Defensive Chemistry
Cited by: 18
Author(s): Reilly McManus, Alison Ravenscraft, Wendy Moore
Software Mentions: 3
Published: about 6 years ago

10.15252/embj.2021107913

Increased levels of mitochondrial import factor Mia40 prevent the aggregation of polyQ proteins in the cytosol
Cited by: 15
Author(s): Anna M. Schlagowski, Katharina Knöringer, Sandrine Morlot, Ana Sánchez Vicente, Tamara Flohr, Lena Krämer, Felix Boos, Nabeel Khalid, Sheraz Ahmed, Jana Schramm, Lena Maria Murschall, Per Haberkant, Frank Stein, Jan Riemer, Benedikt Westermann, Ralf J. Braun, Konstanze F. Winklhofer, Gilles Charvin, Johannes M. Herrmann
Software Mentions: 3
Published: over 3 years ago

10.1016/j.jbc.2021.100927

Beyond PKA: Evolutionary and structural insights that define a docking and dimerization domain superfamily
Cited by: 3
Author(s): Heather R. Dahlin, Ning Zheng, John D. Scott
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-016-3037-z

Recombination-driven generation of the largest pathogen repository of antigen variants in the protozoan Trypanosoma cruzi
Cited by: 30
Author(s): D. Brent Weatherly, Duo Peng, Rick L. Tarleton
Software Mentions: 3
Published: over 8 years ago

10.3390/s18041184

A Multi-Technology Communication Platform for Urban Mobile Sensing
Cited by: 17
Author(s): Rui Almeida, Rui Oliveira, Miguel Luıs, Carlos Senna, Susana Sargento
Software Mentions: 3
Published: over 6 years ago

10.1099/ijs.0.063172-0

Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota
Cited by: 223
Author(s): Michaela Stieglmeier, Andreas Klingl, Ricardo J. Eloy Alves, Simon K.-M. R. Rittmann, Michael Melcher, Nikolaus Leisch, Christa Schleper
Software Mentions: 3
Published: over 10 years ago

10.7554/eLife.68755

Pioneer neutrophils release chromatin within in vivo swarms
Cited by: 26
Author(s): Hannah M. Isles, Catherine A. Loynes, Sultan Alasmari, Fu Chuen Kon, Katherine M. Henry, Anastasia Kadochnikova, Jack Hales, Clare F. Muir, Maria-Cristina Keightley, Visakan Kadirkamanathan, Noémie Hamilton, Graham J. Lieschke, Stephen A. Renshaw, Philip M. Elks
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0047370

Use of Anti-Retroviral Therapy in Tuberculosis Patients on Second-Line Anti-TB Regimens: A Systematic Review
Cited by: 28
Author(s): Matthew Arentz, Patricia B Pavlinac, Michael E. Kimerling, David Horné, Dennis Falzon, Holger J. Schünemann, Sarah Royce, Keertan Dheda, Judd L. Walson
Software Mentions: 2
Published: about 12 years ago

10.3390/s140100575

On the Capability of Smartphones to Perform as Communication Gateways in Medical Wireless Personal Area Networks
Cited by: 33
Author(s): M. J. Morón, Rafael Marcos Luque, E. Casilari
Software Mentions: 2
Published: almost 11 years ago

10.3390/s140100848

NodePM: A Remote Monitoring Alert System for Energy Consumption Using Probabilistic Techniques
Cited by: 25
Author(s): Geraldo P. Rocha Filho, Jó Ueyama, Leandro A. Villas, Alex Sandro Roschildt Pinto, Vinícius P. Gonçalves, Gustavo Pessin, Richard W. Pazzi, Torsten Braun
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41431-019-0560-9

Dwarna: a blockchain solution for dynamic consent in biobanking
Cited by: 41
Author(s): Nicholas Mamo, Gillian M. Martin, Maria Desira, Brian Ellul, Jean-Paul Ebejer
Software Mentions: 2
Published: about 5 years ago

10.3390/s140304312

Ambient Assisted Living Healthcare Frameworks, Platforms, Standards, and Quality Attributes
Cited by: 276
Author(s): Mukhtiar Memon, Stefan Wagner, Christian Fischer Pedersen, Femina Hassan Aysha Beevi, Finn Overgaard Hansen
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0049387

The C. elegans Rab Family: Identification, Classification and Toolkit Construction
Cited by: 27
Author(s): Maria Gallegos, Sanjeev Balakrishnan, Priya Chandramouli, Shaily Arora, Aruna Azameera, Anitha Babushekar, Emilee Bargoma, Abdulmalik A. Bokhari, Siva Kumari Chava, Pranti Das, Meetali Desai, Darlene Decena, Sonia Dev Devadas Saramma, Bodhidipra Dey, Anna Louise Doss, Nilang Gor, Lakshmi Gudiputi, Chunyuan Guo, Sonali Hande, Megan E. Jensen, Samantha H. Jones, Norman Jones, Danielle Jorgens, Padma Karamchedu, Kambiz Kamrani, Lakshmi Divya Kolora, Line Kristensen, Kelly Kwan, Henry K. Lau, Pranesh Maharaj, Navneet Mander, Kalyani Mangipudi, Himabindu Menakuru, Vaishali Mody, Sandeepa Mohanty, Sridevi Mukkamala, Sheena A. Mundra, Sudharani Nagaraju, Rajhalutshimi Narayanaswamy, Catherine Ndungu-Case, Mersedeh Noorbakhsh, Jigna H. Patel, Puja Patel, Swetha Vandana Pendem, Anusha Ponakala, Madhusikta Rath, Michael Robles, Deepti Rokkam, Caroline Lequesne Roth, Preeti Sasidharan, Sapana N. Shah, Shweta Tandon, Jagdip Suprai, Tina Quynh Nhu Truong, Rubatharshini Uthayaruban, Ajitha Varma, Urvi Ved, Zeran Wang, Zhe Yu
Software Mentions: 2
Published: about 12 years ago

10.15252/msb.202010125

Identification of covalent modifications regulating immune signaling complex composition and phenotype
Cited by: 5
Author(s): Annika Frauenstein, Stefan Ebner, Fynn M. Hansen, Ankit Sinha, Kshiti Phulphagar, Kirby N. Swatek, Daniel Hornburg, Matthias Mann, Felix Meissner
Software Mentions: 2
Published: over 3 years ago

10.1096/fba.2020-00095

Curriculum renewal in the time of COVID‐19: The Washington University School of Medicine Story
Cited by: 1
Author(s): Eva Aagaard, Timothy Yau, Carolyn Dufault
Software Mentions: 2
Published: about 4 years ago

10.3390/s17112610

HDOMO: Smart Sensor Integration for an Active and Independent Longevity of the Elderly
Cited by: 13
Author(s): Emanuele Frontoni, Rama Pollini, Paola Russo, Primo Zingaretti, G. Cerri
Software Mentions: 2
Published: about 7 years ago

10.3390/s18020537

An IoT-Based Gamified Approach for Reducing Occupants’ Energy Wastage in Public Buildings
Cited by: 26
Author(s): Thanasis G. Papaioannou, Nikos Dimitriou, Kostas Vasilakis, Anthony Schoofs, Manolis Nikiforakis, Fabian Pursche, Nikolay Deliyski, Amr Taha, Dimosthenis Kotsopoulos, Cleopatra Bardaki, Sarantis Kotsilitis, Anastasia Garbi
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2105-9-82

A comparison of common programming languages used in bioinformatics
Cited by: 91
Author(s): Mathieu Fourment, Michael R. Gillings
Software Mentions: 2
Published: almost 17 years ago

10.1038/srep32196

RETRACTED ARTICLE: PPP1, a plant-specific regulator of transcription controls Arabidopsis development and PIN expression
Cited by: 5
Author(s): René Benjamins, Elke Barbez, Martina Ortbauer, Inez Terpstra, Doris Lucyshyn, Jeanette Moulinier-Anzola, Muhammad Asaf Khan, Johannes Leitner, Nenad Malenica, Haroon Butt, Barbara Korbei, Ben Scheres, Jürgen Kleine‐Vehn, Christian Luschnig
Software Mentions: 2
Published: over 8 years ago

10.3390/plants10081517

The Chloroplast Phylogenomics and Systematics of Zoysia (Poaceae)
Cited by: 6
Author(s): Se-Hwan Cheon, Min-Ah Woo, Sangjin Jo, Young-Kee Kim, Ki Joong Kim
Software Mentions: 2
Published: over 3 years ago

10.3109/14017431.2015.1009383

Focused ultrasound of the pleural cavities and the pericardium by nurses after cardiac surgery
Cited by: 18
Author(s): Torbjørn Graven, Alexander Wahba, Anne Marie Hammer, Ove Sagen, Øystein E. Olsen, Kyrre Skjetne, Jens Olaf Kleinau, Håvard Dalen
Software Mentions: 2
Published: almost 10 years ago

10.1083/jcb.201607098

Three-tier regulation of cell number plasticity by neurotrophins and Tolls in Drosophila
Cited by: 28
Author(s): István Földi, Niki Anthoney, Neale Harrison, Monique Gangloff, Brett Verstak, Mohanakarthik Ponnadai Nallasivan, Samaher AlAhmed, Bangfu Zhu, Mark Phizacklea, María Losada‐Pérez, Marta Moreira, Alicia Hidalgo
Software Mentions: 2
Published: over 7 years ago

10.3390/s20185173

Real-Time Weather Monitoring and Prediction Using City Buses and Machine Learning
Cited by: 16
Author(s): Ziqi Huang, Ying-Chih Chen, Chih-Yu Wen
Software Mentions: 2
Published: over 4 years ago

10.3390/s20185166

MAKE-IT—A Lightweight Mutual Authentication and Key Exchange Protocol for Industrial Internet of Things
Cited by: 18
Author(s): Karanjeet Choudhary, Gurjot Singh Gaba, İsmail Bütün, Pardeep Kumar
Software Mentions: 2
Published: over 4 years ago

10.1534/g3.120.401110

Proxies of CRISPR/Cas9 Activity To Aid in the Identification of Mutagenized Arabidopsis Plants
Cited by: 9
Author(s): Renyu Li, Charles Vavrik, Cristian H. Danna
Software Mentions: 2
Published: over 4 years ago

10.3389/fncel.2020.00277

Integration of Within-Cell Experimental Data With Multi-Compartmental Modeling Predicts H-Channel Densities and Distributions in Hippocampal OLM Cells
Cited by: 9
Author(s): Vladislav Sekulić, Feng Yi, Tavita Garrett, Alexandre Guet-McCreight, J. Josh Lawrence, Frances K. Skinner
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pntd.0006139

New insights into Trypanosoma cruzi evolution, genotyping and molecular diagnostics from satellite DNA sequence analysis
Cited by: 23
Author(s): Juan Carlos Ramı́rez, Carolina Torres, Maria de Los Angeles Curto, Alejandro G. Schijman
Software Mentions: 2
Published: about 7 years ago

10.2196/publichealth.7150

GapMap: Enabling Comprehensive Autism Resource Epidemiology
Cited by: 5
Author(s): Nikhila Albert, Jena Daniels, Jessey Schwartz, Michael Du, Dennis P. Wall
Software Mentions: 2
Published: over 7 years ago

10.3390/ijerph121013542

Altered Hippocampal Lipid Profile Following Acute Postnatal Exposure to Di(2-Ethylhexyl) Phthalate in Rats
Cited by: 13
Author(s): Catherine A. Smith, Kyle Farmer, Hyun-Min Lee, Matthew R. Holahan, Jeffrey C. Smith
Software Mentions: 2
Published: about 9 years ago

10.3389/fgene.2017.00185

Hidden Diversity in the Populations of the Armored Catfish Ancistrus Kner, 1854 (Loricariidae, Hypostominae) from the Paraná River Basin Revealed by Molecular and Cytogenetic Data
Cited by: 17
Author(s): Ana Camila Prizon, Daniel Pacheco Bruschi, Luciana Andreia Borin-Carvalho, Andréa Cius, Ligia Magrinelli Barbosa, Henrique B. Ruiz, Cláudio Henrique Zawadzki, Alberto Sérgio Fenocchio, Ana Luiza de Brito Portela-Castro
Software Mentions: 2
Published: about 7 years ago

10.1186/1472-6920-14-156

Feasibility and accuracy of point-of-care pocket-size ultrasonography performed by medical students
Cited by: 67
Author(s): Garrett Newton Andersen, Annja T. Viset, Ole Christian Mjølstad, Øyvind Salvesen, Håvard Dalen, Bjørn Olav Haugen
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-8-S3-S4

AlzPharm: integration of neurodegeneration data using RDF
Cited by: 39
Author(s): Hugo Y. K. Lam, Luis N. Marenco, Tim W. Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, George S. K. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei‐Hoi Cheung
Software Mentions: 2
Published: over 17 years ago

10.3389/fphys.2021.724828

Glutamate 73 Promotes Anti-arrhythmic Effects of Voltage-Dependent Anion Channel Through Regulation of Mitochondrial Ca2+ Uptake
Cited by: 4
Author(s): Hirohito Shimizu, Simon Huber, Adam D. Langenbacher, Lauren Crisman, Jie Huang, Kevin Wang, Fabiola Wilting, Thomas Gudermann, Johann Schredelseker, Jau-Nian Chen
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0190526

Plant X-tender: An extension of the AssemblX system for the assembly and expression of multigene constructs in plants
Cited by: 9
Author(s): Tjaša Lukan, Fabian Machens, Anna Coll, Špela Baebler, Katrin Messerschmidt, Kristina Gruden
Software Mentions: 2
Published: almost 7 years ago

10.1186/1756-3305-7-395

Molecular characterization of flaviviruses from field-collected mosquitoes in northwestern Italy, 2011–2012
Cited by: 27
Author(s): F. Rizzo, Francesco Cerutti, Marco Ballardini, Andrea Mosca, Nicoletta Vitale, Maria Cristina Radaelli, Rosanna Desiato, Marino Prearo, Alessandra Pautasso, Cristina Casalone, Pier Luigi Acutis, Simone Peletto, Maria Lucia Mandola
Software Mentions: 2
Published: over 10 years ago

10.2196/22214

The Academic Viewpoint on Patient Data Ownership in the Context of Big Data: Scoping Review
Cited by: 21
Author(s): M Mirchev, Iskra Mircheva, Albena Kerekovska
Software Mentions: 2
Published: over 4 years ago

10.1002/ece3.2986

Barcoding rotifer biodiversity in Mediterranean ponds using diapausing egg banks
Cited by: 14
Author(s): Emilio Moreno, José M. Conde‐Porcuna, África Gómez
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.6011

Shared response to changes in drainage basin: Phylogeography of the Yunnan small narrow‐mouthed frog, <i>Glyphoglossus yunnanensis</i> (Anura: Microhylidae)
Cited by: 6
Author(s): Dongru Zhang, Hui Hong, Guohua Yang, Xinqiang Song, Shuo Liu, Siqi Yuan, Hang Xiao, Dingqi Rao
Software Mentions: 2
Published: almost 5 years ago

10.1038/srep43708

Disruptions in asymmetric centrosome inheritance and WDR62-Aurora kinase B interactions in primary microcephaly
Cited by: 34
Author(s): Paraskevi Sgourdou, Ketu Mishra-Gorur, Ichiko Saotome, Octavian Henagariu, Beyhan Tüysüz, Cynthia Resende Campos, Keiko Ishigame, Κρινιώ Γιαννίκου, Jennifer L. Quon, Nenad Šestan, Ahmet Okay Çağlayan, Murat Günel, Angeliki Louvi
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pgen.1000028

Gene Activation Using FLP Recombinase in C. elegans
Cited by: 122
Author(s): Matthew L. Davis, J. Jason Morton, Dana Carroll, Erik M. Jørgensen
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pmed.1001183

Care Seeking for Neonatal Illness in Low- and Middle-Income Countries: A Systematic Review
Cited by: 99
Author(s): Hadley K. Herbert, Anne C C Lee, Aruna Chandran, Igor Rudan, Abdullah H Baqui
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0170118

A Split-GFP Gateway Cloning System for Topology Analyses of Membrane Proteins in Plants
Cited by: 16
Author(s): Wenjun Xie, Mads Eggert Nielsen, Carsten Pedersen, Hans Thordal‐Christensen
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0220694

COSPLAY: An expandable toolbox for combinatorial and swift generation of expression plasmids in yeast
Cited by: 5
Author(s): Youlian Goulev, Audrey Matifas, Vincent Heyer, Bernardo Reina‐San‐Martin, Gilles Charvin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0080281

Rapid Assembly of Customized TALENs into Multiple Delivery Systems
Cited by: 15
Author(s): Zhengxing Zhang, Siliang Zhang, Xin Huang, Kyle E. Orwig, Yi Sheng
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0037429

Automated Solid-Phase Subcloning Based on Beads Brought into Proximity by Magnetic Force
Cited by: 4
Author(s): Elton P. Hudson, Andrej Nikoshkov, Mathias Uhlén, Johan Rockberg
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0107907

IRDL Cloning: A One-Tube, Zero-Background, Easy-to-Use, Directional Cloning Method Improves Throughput in Recombinant DNA Preparation
Cited by: 5
Author(s): Jiancai Wang, Ruo Xu, Aizhong Liu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0042102

A Modular Toolset for Recombination Transgenesis and Neurogenetic Analysis of Drosophila
Cited by: 107
Author(s): Jiwu Wang, Erin Beck, Brian D. McCabe
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0159277

A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications
Cited by: 16
Author(s): Daniel K. Fowler, Scott Stewart, Steve Seredick, Judith S Eisen, Kryn Stankunas, Philip Washbourne
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0123646

A Gateway-Based System for Fast Evaluation of Protein-Protein Interactions in Bacteria
Cited by: 8
Author(s): Thorsten Wille, Britta Barlag, Vladimir Jakovljevic, Michael Hensel, Victor Sourjik, Roman G. Gerlach
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0226749

Digging the diversity of Iberian bait worms Marphysa (Annelida, Eunicidae)
Cited by: 9
Author(s): Daniel Martín, João Gil, Joana Zanol, Miguel A. Meca, Rocío Pérez‐Portela
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0231683

Hidden biodiversity in Neotropical streams: DNA barcoding uncovers high endemicity of freshwater macroinvertebrates at small spatial scales
Cited by: 11
Author(s): Luis F. De León, Aydeé Cornejo, Ronnie G. Gavilán, Celestino Aguilar
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0066274

Tightly Regulated and Homogeneous Transgene Expression in Human Adipose-Derived Mesenchymal Stem Cells by Lentivirus with Tet-Off System
Cited by: 11
Author(s): Hiroyuki Moriyama, Mariko Moriyama, Kei Sawaragi, Hanayuki Okura, Akihiro Ichinose, Akifumi Matsuyama, Tetsuo Hayakawa
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0197185

Peripheral infrastructure vectors and an extended set of plant parts for the Modular Cloning system
Cited by: 49
Author(s): Johannes Gantner, Jana Ordon, Theresa Ilse, Carola Kretschmer, Ramona Gruetzner, Christian Löfke, Yasin Dagdas, Katharina Bürstenbinder, Sylvestre Marillonnet, Johannes Stuttmann
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0043164

Specific Expression of Channelrhodopsin-2 in Single Neurons of Caenorhabditis elegans
Cited by: 70
Author(s): Cornelia Schmitt, Christian Schultheis, Steven Husson, Jana F. Liewald, Alexander Gottschalk
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0051190

Phylogeny of the Archiborborinae (Diptera: Sphaeroceridae) Based on Combined Morphological and Molecular Analysis
Cited by: 7
Author(s): Joel H. Kits, Stephen A. Marshall, Jeffrey H. Skevington
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0194247

Molecular and morphological data of the freshwater fish Glandulocauda melanopleura (Characiformes: Characidae) provide evidences of river captures and local differentiation in the Brazilian Atlantic Forest
Cited by: 18
Author(s): Priscila Camelier, Naércio A. Menezes, Guilherme J. Costa‐Silva, Cláudio Oliveira
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0184839

Metabolic engineering to simultaneously activate anthocyanin and proanthocyanidin biosynthetic pathways in Nicotiana spp.
Cited by: 19
Author(s): Sandra Fresquet-Corrales, Edelín Roque, Alejandro Sarrión-Perdigones, Maricruz Rochina, María Pilar López-Gresa, Huertas M. Díaz-Mula, José María Bellés, Francisco A Tomás‐Barberán, José Pío Beltrán, Luis A. Cañas
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0029191

Heterologous Expression of Membrane Proteins: Choosing the Appropriate Host
Cited by: 115
Author(s): Florent Bernaudat, Annie Frelet-Barrand, Nathalie Pochon, Sébastien Dementin, Patrick Hivin, Sylvain Boutigny, Jean-Baptiste Rioux, Daniel Salvi, Daphné Seigneurin-Berny, Pierre Richaud, Jacques Joyard, David Pignol, Monique Sabaty, Thierry Desnos, Eva Pebay‐Peyroula, Élisabeth Darrouzet, Thierry Vernet, Norbert Rolland
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0101748

β-Catenin Inactivation Is a Pre-Requisite for Chick Retina Regeneration
Cited by: 26
Author(s): Jie Zhu, Agustín Luz-Madrigal, Tracy Haynes, Julia Zavada, Amy K. Burke, Katia Del Rio‐Tsonis
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0024531

A Gateway MultiSite Recombination Cloning Toolkit
Cited by: 94
Author(s): Lena K. Petersen, R. Steven Stowers
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0182367

Biologically active recombinant human erythropoietin expressed in hairy root cultures and regenerated plantlets of Nicotiana tabacum L.
Cited by: 24
Author(s): Poornima Devi Gurusamy, Holger Schäfer, Ramamoorthy Siva, Michael Wink
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0065956

High-Throughput System for the Presentation of Secreted and Surface-Exposed Proteins from Gram-Positive Bacteria in Functional Metagenomics Studies
Cited by: 13
Author(s): Dragana Dobrijevic, Gaëtana Di Liberto, Kosei Tanaka, Tomás de Wouters, Rozenn Dervyn, Samira Boudebbouze, Johan Binesse, Hervé M. Blottière, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0111538

Rapid Restriction Enzyme-Free Cloning of PCR Products: A High-Throughput Method Applicable for Library Construction
Cited by: 10
Author(s): Vijay Chaudhary, Nimisha Shrivastava, Vaishali Verma, Shilpi Das, Charanpreet Kaur, Payal Grover, Amita Gupta
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0204964

Novel gateway binary vectors for rapid tripartite DNA assembly and promoter analysis with various reporters and tags in the liverwort Marchantia polymorpha
Cited by: 15
Author(s): Shoji Mano, Ryuichi Nishihama, Susumu Ishida, Kazumi Hikino, Maki Kondo, Mikio Nishimura, Katsuyuki T. Yamato, Takayuki Kohchi, Tsuyoshi Nakagawa
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0000916

A Multicassette Gateway Vector Set for High Throughput and Comparative Analyses in Ciona and Vertebrate Embryos
Cited by: 116
Author(s): Agnès Roure, Ute Rothbächer, François Robin, Éva Kalmár, Giustina Ferone, C. Lamy, Caterina Missero, Ferenc Müller, Patrick Lemaire
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0186568

TA-GC cloning: A new simple and versatile technique for the directional cloning of PCR products for recombinant protein expression
Cited by: 1
Author(s): Athanasios Niarchos, Anastasia Siora, Evangelia Konstantinou, Vasiliki Kalampoki, George Lagoumintzis, Konstantinos Poulas
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0020082

MosSCI and Gateway Compatible Plasmid Toolkit for Constitutive and Inducible Expression of Transgenes in the C. elegans Germline
Cited by: 90
Author(s): Eva Zeiser, Christian Frøkjær-Jensen, Erik M. Jørgensen, Julie Ahringer
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0019883

RMDAP: A Versatile, Ready-To-Use Toolbox for Multigene Genetic Transformation
Cited by: 18
Author(s): Lei Ma, Jiangli Dong, Yongsheng Jin, Mingliang Chen, Xiaoye Shen, Tao Wang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0115318

Hot Fusion: An Efficient Method to Clone Multiple DNA Fragments as Well as Inverted Repeats without Ligase
Cited by: 121
Author(s): Changlin Fu, William P. Donovan, Olga Shikapwashya-Hasser, Xudong Ye, Robert H. Cole
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0019937

Determining the Sub-Cellular Localization of Proteins within Caenorhabditis elegans Body Wall Muscle
Cited by: 42
Author(s): Barbara Meissner, Teresa M. Rogalski, Ryan Viveiros, Adam Warner, Lorena Plastino, Adam H. Lorch, Laure Granger, Laurent Ségalat, Donald G. Moerman
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0053360

Exponential Megapriming PCR (EMP) Cloning—Seamless DNA Insertion into Any Target Plasmid without Sequence Constraints
Cited by: 63
Author(s): Alexander Ulrich, Kasper R. Andersen, Thomas Schwartz
Software Mentions: 1
Published: almost 12 years ago

10.2174/138920213804999183

Illuminating microRNA Transcription from the Epigenome
Cited by: 4
Author(s): Praveen Sethupathy
Software Mentions: 1
Published: almost 12 years ago

10.1002/ece3.7599

Plastid genome sequencing, identification of nuclear SNP markers, and quality assessment of medicinal rhizomatous herb <i>Polygonatum odoratum</i> (Asparagaceae) cultivars
Cited by: 4
Author(s): Shiou Yih Lee, Zhihui Chen, Zhiming Chen, Jingrui Chen, Xinjian Zhang, Jiawen Pan, Qingxia Fan, Wenbo Liao
Software Mentions: 1
Published: over 3 years ago

10.1002/ece3.3420

Ancestrality and evolution of trait syndromes in finches (Fringillidae)
Cited by: 0
Author(s): Jean‐François Ponge, Dario Zuccon, Marianne Élias, Sandrine Pavoine, Pierre‐Yves Henry, Marc Théry, Éric Guilbert
Software Mentions: 1
Published: about 7 years ago

10.1002/ece3.4338

Phylogeography of two closely related species of<i>Allium</i>endemic to East Asia: Population evolution in response to climate oscillations
Cited by: 3
Author(s): Jingtian Yang, Song‐Dong Zhou, Deqing Huang, Xing‐Jin He
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.4987

Biogeography of the xerophytic genus<i>Anabasis</i>L. (Chenopodiaceae)
Cited by: 11
Author(s): Maximilian Lauterbach, Marie Claire Veranso‐Libalah, Alexander P. Sukhorukov, Gudrun Kadereit
Software Mentions: 1
Published: almost 6 years ago

10.1080/22221751.2021.1892458

<i>Phialemoniopsis limonesiae</i> sp. nov. causing cutaneous phaeohyphomycosis in an immunosuppressed woman
Cited by: 3
Author(s): David Álvarez Martínez, Chloé Alberto, Arnaud Riat, Caroline Schuhler, Pablo Valladares, Béatrice Alice Bescher Ninet, Bart Kraak, Pedro W. Crous, L.W. Hou, Laurence Toutous Trellu
Software Mentions: 1
Published: almost 4 years ago

10.1017/S0950268819002218

New records and genetic diversity of <i>Mycoplasma ovis</i> in free-ranging deer in Brazil
Cited by: 7
Author(s): Marcos Rogério André, José Maurício Barbanti Duarte, Luiz Ricardo Gonçalves, Ana Beatriz Vieira Sacchi, Márcia Mariza Gomes Jusi, Rosangela Zacarias Machado
Software Mentions: 1
Published: almost 5 years ago

10.1111/eva.12572

Genomic analyses identify multiple Asian origins and deeply diverged mitochondrial clades in inbred brown rats ( <i>Rattus norvegicus</i> )
Cited by: 13
Author(s): Emily E. Puckett, Olivia Micci‐Smith, Jason Munshi‐South
Software Mentions: 1
Published: about 7 years ago

10.12688/f1000research.18546.1

Recent advances in understanding Candida albicans hyphal growth
Cited by: 31
Author(s): Robert A. Arkowitz, Martine Bassilana
Software Mentions: 1
Published: over 5 years ago

10.1093/femsyr/fov066

<i>Candida glabrata</i>: new tools and technologies—expanding the toolkit
Cited by: 23
Author(s): Hsueh-lui Ho, Ken Haynes
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.01606

Acrogenospora (Acrogenosporaceae, Minutisphaerales) Appears to Be a Very Diverse Genus
Cited by: 13
Author(s): Dan-Feng Bao, Eric H. C. McKenzie, D. Jayarama Bhat, Kevin D. Hyde, Zong-Long Luo, Hong-Wei Shen, Hong-Yan Su
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2021.694115

A Case of Intragenic Recombination Dramatically Impacting the Phage WO Genetic Diversity in Gall Wasps
Cited by: 2
Author(s): Dao‐Hong Zhu, Cheng‐Yuan Su, Xiaohui Yang, Yoshihisa Abe
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2021.654683

Morpho-Phylo Taxonomy of Novel Dothideomycetous Fungi Associated With Dead Woody Twigs in Yunnan Province, China
Cited by: 19
Author(s): Peter E. Mortimer, Rajesh Jeewon, Jianchu Xu, Saisamorn Lumyong, Dhanushka N. Wanasinghe
Software Mentions: 1
Published: almost 4 years ago