Projects: pypi: GEOparse
https://packages.ecosyste.ms/registries/pypi.org/packages/GEOparse
Python library to access Gene Expression Omnibus Database (GEO)
22 versions
Latest release: over 5 years ago
1 dependent package
8,380 downloads last month
Enhanced Analysis
Educational Contributors:
alejandro.barrera@duke.edu
Repository Activity:
Repository Owner:
Rafal Gumienny (user)
Scientific Software Engineer at Novartis Institutes for BioMedical Research (NIBR) Academic
Scientific Software Engineer at Novartis Institutes for BioMedical Research (NIBR) Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+6
Science terms in README
3 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning GEOparse 6
10.18632/aging.102049
Placental epigenetic clocks: estimating gestational age using placental DNA methylation levelsCited by: 69
Author(s): Yunsung Lee, Sanaa Choufani, Rosanna Weksberg, Samantha L. Wilson, Victor Yuan, Amber Burt, Carmen J. Marsit, Ake T. Lu, Beate Ritz, Jon Bohlin, Håkon K. Gjessing, Jennifer R. Harris, Per Magnus, Alexandra M. Binder, Wendy P. Robinson, Astanand Jugessur, Steve Horvath
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-020-70583-0
Detecting ulcerative colitis from colon samples using efficient feature selection and machine learningCited by: 25
Author(s): Hanieh Marvi Khorasani, Hamid Usefi, Lourdes Peña‐Castillo
Software Mentions: 3
Published: about 6 years ago
10.1128/MRA.00587-20
COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus DatabaseCited by: 3
Author(s): Kevin S. Myers, Michael Place, Daniel R. Noguera, Timothy J. Donohue
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-021-88617-6
The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literatureCited by: 7
Author(s): S. Pirro, Ivana Z. Matić, Vittorio Colizzi, Andrea Galgani
Software Mentions: 2
Published: over 5 years ago
10.1186/s12964-020-00655-1
H. pylori modulates DC functions via T4SS/TNFα/p38-dependent SOCS3 expressionCited by: 12
Author(s): Muamera Sarajlic, Theresa Neuper, Julia Vetter, Susanne Schaller, Maria M. Klicznik, Iris K. Gratz, Silja Weßler, Gernot Posselt, Jutta Horejs‐Hoeck
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms20235931
IL-1β Induces SOCS2 Expression in Human Dendritic CellsCited by: 5
Author(s): Muamera Sarajlic, Theresa Neuper, Kim Tamara Föhrenbach Quiroz, Sara Michelini, Julia Vetter, Susanne Schaller, Jutta Horejs‐Hoeck
Software Mentions: 1
Published: almost 7 years ago