Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: GEOparse

https://packages.ecosyste.ms/registries/pypi.org/packages/GEOparse

Python library to access Gene Expression Omnibus Database (GEO)
22 versions
Latest release: almost 4 years ago
1 dependent package
8,380 downloads last month

Papers Mentioning GEOparse 6

Placental epigenetic clocks: estimating gestational age using placental DNA methylation levels
Cited by: 69
Author(s): Yunsung Lee, Sanaa Choufani, Rosanna Weksberg, Samantha L. Wilson, Victor Yuan, Amber Burt, Carmen J. Marsit, Ake T. Lu, Beate Ritz, Jon Bohlin, Håkon K. Gjessing, Jennifer R. Harris, Per Magnus, Alexandra M. Binder, Wendy P. Robinson, Astanand Jugessur, Steve Horvath
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-70583-0

Detecting ulcerative colitis from colon samples using efficient feature selection and machine learning
Cited by: 25
Author(s): Hanieh Marvi Khorasani, Hamid Usefi, Lourdes Peña‐Castillo
Software Mentions: 3
Published: over 4 years ago

10.1128/MRA.00587-20

COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database
Cited by: 3
Author(s): Kevin S. Myers, Michael Place, Daniel R. Noguera, Timothy J. Donohue
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-88617-6

The microRNA analysis portal is a next-generation tool for exploring and analyzing miRNA-focused data in the literature
Cited by: 7
Author(s): S. Pirro, Ivana Z. Matić, Vittorio Colizzi, Andrea Galgani
Software Mentions: 2
Published: over 3 years ago

10.1186/s12964-020-00655-1

H. pylori modulates DC functions via T4SS/TNFα/p38-dependent SOCS3 expression
Cited by: 12
Author(s): Muamera Sarajlic, Theresa Neuper, Julia Vetter, Susanne Schaller, Maria M. Klicznik, Iris K. Gratz, Silja Weßler, Gernot Posselt, Jutta Horejs‐Hoeck
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms20235931

IL-1β Induces SOCS2 Expression in Human Dendritic Cells
Cited by: 5
Author(s): Muamera Sarajlic, Theresa Neuper, Kim Tamara Föhrenbach Quiroz, Sara Michelini, Julia Vetter, Susanne Schaller, Jutta Horejs‐Hoeck
Software Mentions: 1
Published: almost 5 years ago