Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Funspec

https://packages.ecosyste.ms/registries/pypi.org/packages/Funspec

A short description for your project.
1 version
Latest release: over 7 years ago
4 downloads last month

Papers Mentioning Funspec 21

10.1186/1471-2164-14-445
The Saccharomyces cerevisiae transcriptome as a mirror of phytochemical variation in complex extracts of Equisetum arvense from America, China, Europe and India
Cited by: 20
Author(s): R. Kimberley Cook, James R. Hennell, Samiuela Lee, Cheang Khoo, Maria Carles, Vincent J. Higgins, Suresh Govindaraghavan, Nikolaus J. Sucher
Software Mentions: 7
Published: over 11 years ago
10.1371/journal.pone.0192383
Adaptability of the Saccharomyces cerevisiae yeasts to wine fermentation conditions relies on their strong ability to consume nitrogen
Cited by: 40
Author(s): Claire Brice, Francisco A. Cubillos, Sylvie Dequin, Carole Camarasa, Claudio Martı́nez
Software Mentions: 4
Published: over 6 years ago
10.1186/s12864-017-4214-4
Metabolic differentiation of surface and invasive cells of yeast colony biofilms revealed by gene expression profiling
Cited by: 13
Author(s): Jana Maršíková, Derek Wilkinson, Otakar Hlaváček, Gregor D. Gilfillan, Alexandru Mizeranschi, Timothy R. Hughes, Markéta Begany, Stanislava Rešetárová, Libuše Váchová, Zdena Palková
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pgen.1007806
Conserved mRNA-granule component Scd6 targets Dhh1 to repress translation initiation and activates Dcp2-mediated mRNA decay in vivo
Cited by: 27
Author(s): Quira Zeidan, Feng He, Fan Zhang, Hongen Zhang, Allan Jacobson, Alan G. Hinnebusch
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0184838
A set of nutrient limitations trigger yeast cell death in a nitrogen-dependent manner during wine alcoholic fermentation
Cited by: 40
Author(s): Camille Duc, Martine Pradal, Isabelle Sanchez, Jessica Noble, Catherine Tesnière, Bruno Blondin
Software Mentions: 3
Published: about 7 years ago
10.1186/s12864-017-3816-1
Integrating transcriptomics and metabolomics for the analysis of the aroma profiles of Saccharomyces cerevisiae strains from diverse origins
Cited by: 30
Author(s): Inês Mendes, Isabelle Sanchez, Ricardo Franco-Duarte, Carole Camarasa, Dorit Elisabeth Schuller, Sylvie Dequin, Maria João Sousa
Software Mentions: 3
Published: over 7 years ago
10.1534/g3.111.000836
Genome-wide Fitness Profiles Reveal a Requirement for Autophagy During Yeast Fermentation
Cited by: 24
Author(s): Nina Piggott, Michael A. Cook, Mike Tyers, Vivien Measday
Software Mentions: 2
Published: about 13 years ago
10.1186/1471-2164-13-317
A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation
Cited by: 64
Author(s): Magalie Celton, Isabelle Sanchez, Anne Goelzer, Vincent Fromion, Carole Camarasa, Sylvie Dequin
Software Mentions: 2
Published: over 12 years ago
10.1186/s13068-020-01745-5
A microbubble-sparged yeast propagation–fermentation process for bioethanol production
Cited by: 14
Author(s): Vijayendran Raghavendran, Joseph P. Webb, Michaël L. Cartron, V S Springthorpe, Tony R. Larson, Michael J Hines, Hamza Mohammed, William B. Zimmerman, Robert K. Poole, Jeffrey Green
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2164-10-130
Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae
Cited by: 33
Author(s): William J. Jo, Jeung Hyoun Kim, Eric Oh, Daniel Jaramillo, Patricia S. Holman, Alex Loguinov, Adam P. Arkin, Corey Nislow, Guri Giaever, Chris D. Vulpe
Software Mentions: 2
Published: over 15 years ago
10.1371/journal.pone.0061645
Impact of Nutrient Imbalance on Wine Alcoholic Fermentations: Nitrogen Excess Enhances Yeast Cell Death in Lipid-Limited Must
Cited by: 45
Author(s): Catherine Tesnière, Pierre Delobel, Martine Pradal, Bruno Blondin
Software Mentions: 2
Published: over 11 years ago
10.1186/1471-2164-14-681
Differential adaptation to multi-stressed conditions of wine fermentation revealed by variations in yeast regulatory networks
Cited by: 32
Author(s): Christian Brion, Chloé Ambroset, Isabelle Sanchez, Jean Luc Legras, Bruno Blondin
Software Mentions: 2
Published: about 11 years ago
10.1534/g3.116.037416
Identification of Genes in<i>Saccharomyces cerevisiae</i>that Are Haploinsufficient for Overcoming Amino Acid Starvation
Cited by: 9
Author(s): Nancy S. Bae, Andrew P. Seberg, Leslie P Carroll, Mark J. Swanson
Software Mentions: 1
Published: over 7 years ago
10.3390/microorganisms8010043
Evolutionary Engineering of an Iron-Resistant Saccharomyces cerevisiae Mutant and Its Physiological and Molecular Characterization
Cited by: 18
Author(s): Berrak Gülçin Balaban, Ülkü Yılmaz, Ceren Alkım, Alican Topaloğlu, Halil İbrahim Kısakesen, Can Holyavkin, Z. Petek Çakar
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pbio.1002291
Evolution of Robustness to Protein Mistranslation by Accelerated Protein Turnover
Cited by: 27
Author(s): Dorottya Kalapis, Ana R. Bezerra, Zoltán Farkas, Péter Horváth, Zoltán Bódi, Andreea Daraba, Bé la Szamecz, Marta Gut, Mònica Bayés, Manuel A. S. Santos, Csaba Pál
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pgen.1000120
Mechanisms of Cell Cycle Control Revealed by a Systematic and Quantitative Overexpression Screen in S. cerevisiae
Cited by: 69
Author(s): Wei Niu, Zhihua Li, Wenjing Zhan, Vishwanath R. Iyer, Edward M. Marcotte
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pgen.1003128
DNA Topoisomerases Maintain Promoters in a State Competent for Transcriptional Activation in Saccharomyces cerevisiae
Cited by: 42
Author(s): Jakob Madsen Pedersen, Jacob Fredsøe, Morten Roedgaard, Lotte Andreasen, Kamilla Mundbjerg, Mogens Kruhøffer, Marie Brinch, Mikkel H. Schierup, Lotte Bjergbæk, Anders H. Andersen
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pgen.1002353
Multiple Means to the Same End: The Genetic Basis of Acquired Stress Resistance in Yeast
Cited by: 97
Author(s): David B. Berry, Qiaoning Guan, James Hose, Suraiya Haroon, Marinella Gebbia, Lawrence E. Heisler, Corey Nislow, Guri Giaever, Audrey P. Gasch
Software Mentions: 1
Published: almost 13 years ago
10.1371/journal.pone.0044278
A Genome-Wide Screen in Yeast Identifies Specific Oxidative Stress Genes Required for the Maintenance of Sub-Cellular Redox Homeostasis
Cited by: 37
Author(s): Anita Ayer, Sina Fellermeier, Christopher M. Fife, Simone S. Li, Gertien J. Smits, Andreas Meyer, Ian W. Dawes, Gabriel G. Perrone
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0145108
High-Copy Overexpression Screening Reveals PDR5 as the Main Doxorubicin Resistance Gene in Yeast
Cited by: 9
Author(s): Ayşe Banu Demir, Ahmet Koç
Software Mentions: 1
Published: almost 9 years ago
10.1534/g3.113.007971
<i>Saccharomyces cerevisiae</i> Genes Involved in Survival of Heat Shock
Cited by: 58
Author(s): Stefanie Jarolim, Anita Ayer, Bethany Pillay, Allison C. Gee, Alex A. Phrakaysone, Gabriel G. Perrone, Michael Breitenbach, Ian W. Dawes
Software Mentions: 1
Published: almost 11 years ago