Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Fiona

https://packages.ecosyste.ms/registries/pypi.org/packages/Fiona

Fiona reads and writes spatial data files
112 versions
Latest release: about 1 year ago
140 dependent packages
6,624,022 downloads last month

Papers Mentioning Fiona 19

Chromosome-Wide Evolution and Sex Determination in the Three-Sexed Nematode <i>Auanema rhodensis</i>
Cited by: 31
Author(s): Sophie Tandonnet, Georgios Koutsovoulos, Sally Adams, Delphine Cloarec, Manish Parihar, Mark Blaxter, André Pires-daSilva
Software Mentions: 7
Published: over 5 years ago

10.34133/2019/2591849

Easy MPE: Extraction of Quality Microplot Images for UAV-Based High-Throughput Field Phenotyping
Cited by: 24
Author(s): Léa Tresch, Yun Mu, Atsushi Itoh, Akito Kaga, Kazunori Taguchi, Masayuki Hirafuji, S. Ninomiya, Wei Guo
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0181463

DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing
Cited by: 49
Author(s): Byunghan Lee, Taesup Moon, Sungroh Yoon, Tsachy Weissman
Software Mentions: 4
Published: over 7 years ago

10.1038/s41597-020-0542-3

A rasterized building footprint dataset for the United States
Cited by: 28
Author(s): Mehdi P. Heris, Leon Foks, Kenneth J. Bagstad, Austin Troy, Zachary H. Ancona
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-017-1784-8

Evaluation of the impact of Illumina error correction tools on de novo genome assembly
Cited by: 45
Author(s): Mahdi Heydari, Giles Miclotte, Piet Demeester, Yves Van de Peer, Jan Fostier
Software Mentions: 3
Published: over 7 years ago

10.3389/fpsyg.2020.562128

Evaluation of Online Information in University Students: Development and Scaling of the Screening Instrument EVON
Cited by: 11
Author(s): Carolin Hahnel, Beate Eichmann, Frank Goldhammer
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0187691

National substance use patterns on Twitter
Cited by: 26
Author(s): Hsien-Wen Meng, Suraj Kath, Dapeng Li, Quynh C. Nguyen
Software Mentions: 3
Published: about 7 years ago

10.1186/s12859-019-2906-2

Illumina error correction near highly repetitive DNA regions improves de novo genome assembly
Cited by: 22
Author(s): Mahdi Heydari, Giles Miclotte, Yves Van de Peer, Jan Fostier
Software Mentions: 2
Published: over 5 years ago

10.1093/bib/bbv029

Denoising DNA deep sequencing data—high-throughput sequencing errors and their correction
Cited by: 235
Author(s): David Laehnemann, Arndt Borkhardt, Alice C. McHardy
Software Mentions: 2
Published: over 9 years ago

10.1155/2014/701357

Bflinks: Reliable Bugfix Links via Bidirectional References and Tuned Heuristics
Cited by: 2
Author(s): Lutz Prechelt, Alexander Pepper
Software Mentions: 2
Published: about 10 years ago

10.2196/publichealth.5869

Building a National Neighborhood Dataset From Geotagged Twitter Data for Indicators of Happiness, Diet, and Physical Activity
Cited by: 78
Author(s): Quynh C. Nguyen, Dapeng Li, Hsien-Wen Meng, Suraj Kath, Elaine O. Nsoesie, Feifei Li, Ming Wen
Software Mentions: 2
Published: about 8 years ago

10.1186/s12859-017-1940-1

An efficient error correction algorithm using FM-index
Cited by: 7
Author(s): Yao‐Ting Huang, Yu-Wen Huang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-08139-y

Comparison of error correction algorithms for Ion Torrent PGM data: application to hepatitis B virus
Cited by: 21
Author(s): Liting Song, Wenxun Huang, Jinwu Kang, Yuan Huang, Hong Ren, Keyue Ding
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-52196-4

Athena: Automated Tuning of k-mer based Genomic Error Correction Algorithms using Language Models
Cited by: 5
Author(s): Mustafa Abdallah, Ashraf Mahgoub, Hany Ahmed, Somali Chaterji
Software Mentions: 1
Published: about 5 years ago

10.5334/ijic.2574

“Go Make Your Face Known”: Collaborative Working through the Lens of Personal Relationships
Cited by: 13
Author(s): Nigel King, Alison Bravington, Joanna Brooks, Jane Melvin, David Wilde
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph18073415

Life Expectancy of the Ethnically Mixed: Register-Based Evidence from Native Finns
Cited by: 2
Author(s): Kaarina Reini, Jan Saarela
Software Mentions: 1
Published: over 3 years ago

10.1186/s13584-016-0067-6

Annual acknowledgement of manuscript reviewers
Cited by: 0
Author(s): Bruce Rosen, Avi Israeli
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0133198

Indexing Arbitrary-Length k-Mers in Sequencing Reads
Cited by: 15
Author(s): Tomasz Marek Kowalski, Szymon Grabowski, Sebastian Deorowicz
Software Mentions: 1
Published: over 9 years ago

10.1186/s13059-020-01988-3

Benchmarking of computational error-correction methods for next-generation sequencing data
Cited by: 21
Author(s): Keith Mitchell, Jaqueline J. Brito, Igor Mandric, Qiaozhen Wu, S. P. Knyazev, Sei Chang, Lana S. Martin, Aaron Karlsberg, Ekaterina S. Gerasimov, Russell Littman, Brian Hill, Nicholas C. Wu, Haiou Yang, Kevin Hsieh, Linus Chen, Eli Littman, Taylor Shabani, German Enik, Douglas Yao, Ren Sun, Jan Schroeder, Eleazar Eskin, Alexander Zelikovsky, Pavel Skums, Mihai Pop, Serghei Mangul
Software Mentions: 1
Published: almost 5 years ago