Ecosyste.ms: Papers

10.1038/s41389-018-0043-9

MEK inhibitors overcome resistance to BET inhibition across a number of solid and hematologic cancers
Cited by: 26
Author(s): Anastasia Wyce, Jeanne J. Matteo, Shawn W. Foley, Daniel Felitsky, Satyajit Rajapurkar, Xiping Zhang, Melissa C. Musso, Susan Korenchuk, Natalie O. Karpinich, Kathryn Keenan, Melissa Stern, Lijoy K. Mathew, Charles F. McHugh, Michael T. McCabe, Peter J. Tummino, Ryan G. Kruger, Christopher L. Carpenter, Olena Barbash
Software Mentions: 2
Published: over 6 years ago

10.1515/jib-2018-0069

A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases
Cited by: 23
Author(s): Olga Zolotareva, Maren Kleine
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0115867

Identification of Genes Associated with Reproduction in the Mud Crab (Scylla olivacea) and Their Differential Expression following Serotonin Stimulation
Cited by: 19
Author(s): Napamanee Kornthong, Scott F. Cummins, Charoonroj Chotwiwatthanakun, Kanjana Khornchatri, Attakorn Engsusophon, Peter Hanna, Prasert Sobhon
Software Mentions: 2
Published: almost 10 years ago

10.3390/nu8120799

Regressive Effect of Myricetin on Hepatic Steatosis in Mice Fed a High-Fat Diet
Cited by: 43
Author(s): Shufang Xia, Guowei Li, Peng Wang, Yinsheng Qiu, Yebin Jiang, Xue Tang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12859-019-3161-2

Deep gene selection method to select genes from microarray datasets for cancer classification
Cited by: 12
Author(s): Russul Alanni, Jingyu Hou, Hasseeb Azzawi, Yong Xiang
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2105-11-S6-S29

GOModeler- A tool for hypothesis-testing of functional genomics datasets
Cited by: 10
Author(s): Prashanti Manda, McKinley G. Freeman, Susan M. Bridges, T. J. Jankun-Kelly, Bindu Nanduri, Fiona M. McCarthy, Shane C. Burgess
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2105-11-498

Automatic, context-specific generation of Gene Ontology slims
Cited by: 34
Author(s): Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark A. Ragan
Software Mentions: 1
Published: about 14 years ago

10.1186/s12859-018-2088-3

HT-eQTL: integrative expression quantitative trait loci analysis in a large number of human tissues
Cited by: 16
Author(s): Gen Li, Dereje D. Jima, Fred A. Wright, Andrew B. Nobel
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-020-07471-3

CKD-5, a novel pan-histone deacetylase inhibitor, synergistically enhances the efficacy of sorafenib for hepatocellular carcinoma
Cited by: 4
Author(s): Young Woon Chang, Yun Bin Lee, Eun Ju Cho, Jeong Hoon Lee, Su Jong Yu, Yoon Jun Kim, Jung Hwan Yoon
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2407-14-324

Clinical relevance of breast cancer-related genes as potential biomarkers for oral squamous cell carcinoma
Cited by: 35
Author(s): Toshima Z. Parris, Luaay Aziz, Anikó Kovács, Shahin Hajizadeh, Szilárd Nemes, May Semaan, Chang Yan Chen, Per Karlsson, Khalil Helou
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-016-2105-8

Transgelin increases metastatic potential of colorectal cancer cells in vivo and alters expression of genes involved in cell motility
Cited by: 42
Author(s): Hui Zhou, Yuan Fang, Paul M. Weinberger, Ling Ding, John K. Cowell, Farlyn Z. Hudson, Mingqiang Ren, Jeffrey R. Lee, Qi Kui Chen, Soon-Kwang Hong, William S. Dynan, Ying Lin
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12863-016-0353-x

Study on LOC426217 as a candidate gene for beak deformity in chicken
Cited by: 8
Author(s): Hao Bai, Yanyan Sun, Jing Zhu, Nian Liu, Dongli Li, Fuguang Xue, Yunlei Li, Jilan Chen
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-017-3835-y

Label-free quantitative proteomics of Corynebacterium pseudotuberculosis isolates reveals differences between Biovars ovis and equi strains
Cited by: 13
Author(s): Wanderson M. Silva, Edson Luiz Folador, Siomar C. Soares, Gustavo H. M. F. Souza, Agenor Valadares Santos, Cassiana Severiano de Sousa, Henrique César Pereira Figueiredo, Anderson Miyoshi, Yves Le Loir, Artur M. S. Silva, Vasco Azevedo
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-12-20

Global gene expression profile progression in Gaucher disease mouse models
Cited by: 33
Author(s): You-Hai Xu, Jia Li, Brian Quinn, Matthew Zamzow, Keith F. Stringer, Bruce J. Aronow, Ying Sun, Wujuan Zhang, Kenneth D.R. Setchell, Gregory A. Grabowski
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12864-016-2852-6

ISOexpresso: a web-based platform for isoform-level expression analysis in human cancer
Cited by: 34
Author(s): In Seok Yang, Hyeonju Son, Sora Kim, Sang Woo Kim
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-018-4767-x

Distribution of ncRNAs expression across hypothalamic-pituitary-gonadal axis in Capra hircus
Cited by: 10
Author(s): Emanuele Capra, Barbara Lazzari, S. Frattini, S. Chessa, B. Coizet, Andrea Talenti, Bianca Castiglioni, Paolo Ajmone‐Marsan, P. Crepaldi, G. Pagnacco, J. L. Williams, Alessandra Stella
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-7-9

A molecular signature of epithelial host defense: comparative gene expression analysis of cultured bronchial epithelial cells and keratinocytes
Cited by: 14
Author(s): Joost B. Vos, Nicole A. Datson, Antoine H van Kampen, Angela C. M. Luyf, Renate M. Verhoosel, Patrick L.J.M. Zeeuwen, Diana Olthuis, Klaus F. Rabe, Joost Schalkwijk, Pieter S. Hiemstra
Software Mentions: 1
Published: almost 19 years ago

10.1186/s12920-018-0341-2

Integrated analysis of DNA-methylation and gene expression using high-dimensional penalized regression: a cohort study on bone mineral density in postmenopausal women
Cited by: 9
Author(s): Tonje G. Lien, Ørnulf Borgan, Sjur Reppe, Kaare M. Gautvik, Ingrid K. Glad
Software Mentions: 1
Published: over 6 years ago

10.1186/1755-8794-2-14

Distinct gene subsets in pterygia formation and recurrence: dissecting complex biological phenomenon using genome wide expression data
Cited by: 32
Author(s): Louis Tong, J. Chew, Henry Yang, Leonard P. K. Ang, Donald Tan, Roger W. Beuerman
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2229-14-137

The peach volatilome modularity is reflected at the genetic and environmental response levels in a QTL mapping population
Cited by: 30
Author(s): G. Sánchez, J.I. Perales Martínez, J. Romeu, Jesús García, Antonio J. Monforte, M. L. Badenes, Antonio Granell
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.bbagen.2017.01.020

What killed Karl Patterson Schmidt? Combined venom gland transcriptomic, venomic and antivenomic analysis of the South African green tree snake (the boomslang), Dispholidus typus
Cited by: 49
Author(s): Davinia Plá, Libia Sanz, Gareth Whiteley, Simon C. Wagstaff, Robert A. Harrison, Nicholas R. Casewell, Juan J. Calvete
Software Mentions: 1
Published: over 7 years ago

10.1093/bioinformatics/btx419

A nonparametric significance test for sampled networks
Cited by: 4
Author(s): Andrew Elliott, Elizabeth Leicht, Alan V. Whitmore, Gesine Reinert, Felix Reed‐Tsochas
Software Mentions: 1
Published: over 7 years ago

10.1038/s41416-021-01305-0

A 10-gene prognostic signature points to LIMCH1 and HLA-DQB1 as important players in aggressive cervical cancer disease
Cited by: 12
Author(s): Mari K. Halle, Marte Sødal, David Forsse, Hilde Engerud, Kathrine Woie, Njål Lura, Kari Wagner-Larsen, Jone Trovik, Bjørn Bertelsen, Ingfrid S. Haldorsen, Akinyemi I. Ojesina, Camilla Krakstad
Software Mentions: 1
Published: over 3 years ago

10.1002/brb3.2165

Genetic variation of rs12918566 affects GRIN2A expression and is associated with spontaneous movement response during sevoflurane anesthesia induction
Cited by: 2
Author(s): Minghua Chen, Chao Fang, Nayiyuan Wu, Yuhao Xia, Youjie Zeng, Wen Ouyang
Software Mentions: 1
Published: over 3 years ago

10.1590/1414-431X2021e11439

Decreased levels of cathepsin Z mRNA expressed by immune blood cells: diagnostic and prognostic implications in prostate cancer
Cited by: 4
Author(s): Alzir A. Batista, Franco Bazzoli, Matheus Moreira Perez, Eurico Pereira, Tiago Rodrigues, Marcelo Langer Wroclawski, Fernando L. A. Fonseca, Eloah Rabello Suarez
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13058-018-0964-4

A survey of microRNA single nucleotide polymorphisms identifies novel breast cancer susceptibility loci in a case-control, population-based study of African-American women
Cited by: 14
Author(s): Jeannette T. Bensen, Mariaelisa Graff, Kristin L. Young, Praveen Sethupathy, Joel S. Parker, Chad V. Pecot, Kevin W. Currin, Stephen A. Haddad, Edward A. Ruiz-Narváez, Christopher A. Haiman, Chi Chen Hong, Lara E. Sucheston‐Campbell, Qianqian Zhu, Song Liu, Song Yao, Elisa V. Bandera, Lynn Rosenberg, Kathryn L. Lunetta, Christine B. Ambrosone, Julie R. Palmer, Melissa A. Troester, Andrew F. Olshan
Software Mentions: 1
Published: over 6 years ago

10.1186/s13058-018-0944-8

The hypoxic tumor microenvironment in vivo selects the cancer stem cell fate of breast cancer cells
Cited by: 78
Author(s): Hoon Kim, Qun Lin, Peter M. Glazer, Zhong Yun
Software Mentions: 1
Published: over 6 years ago

10.1007/s00335-015-9563-1

GXD: a community resource of mouse Gene Expression Data
Cited by: 23
Author(s): Cyndi M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald
Software Mentions: 1
Published: over 9 years ago

10.3390/mi11070663

Three-Dimensional Regeneration of Patient-Derived Intestinal Organoid Epithelium in a Physiodynamic Mucosal Interface-on-a-Chip
Cited by: 32
Author(s): Yong Cheol Shin, Woo‐Ri Shin, Domin Koh, Alexander T.H. Wu, Yoko M. Ambrosini, Sung−Wook Min, S. Gail Eckhardt, Rachel Fleming, Seung Kim, Sowon Park, Hong Koh, Tae Kyung Yoo, Hyun Jung Kim
Software Mentions: 1
Published: over 4 years ago

10.1074/mcp.RA118.001280

Multi-omics Characterization of Interaction-mediated Control of Human Protein Abundance levels
Cited by: 16
Author(s): Abel Sousa, Emanuel Gonçalvès, Bogdan Mirauta, David Ochoa, Oliver Stegle, Pedro Beltrão
Software Mentions: 1
Published: over 5 years ago

10.1186/s13567-020-00776-y

The effect of different dietary ratios of lysine and arginine in diets with high or low methionine levels on oxidative and epigenetic DNA damage, the gene expression of tight junction proteins and selected metabolic parameters in Clostridium perfringens-challenged turkeys
Cited by: 14
Author(s): Katarzyna Ognik, Paweł Konieczka, D. Mikulski, Jan Jankowski
Software Mentions: 1
Published: over 4 years ago

10.1186/s13567-020-00863-0

Cannabis-derived cannabidiol and nanoselenium improve gut barrier function and affect bacterial enzyme activity in chickens subjected to C. perfringens challenge
Cited by: 24
Author(s): Paweł Konieczka, Dominika Szkopek, Misza Kinsner, Bartosz Fotschki, Jerzy Juśkiewicz, Joanna Banach
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13071-017-2503-z

Production and characterization of monoclonal antibodies against Encephalitozoon intestinalis and Encephalitozoon sp. spores and their developmental stages
Cited by: 5
Author(s): F. Izquierdo, Hércules Moura, Fernando J. Bornay-Llinares, Rama Sriram, Carolina Hurtado, Ángela Magnet, Govinda S. Visvesvara, C. del Águila
Software Mentions: 1
Published: almost 7 years ago

10.1007/s00467-008-0808-z

In praise of arrays
Cited by: 30
Author(s): Lihua Ying, Minnie M. Sarwal
Software Mentions: 1
Published: about 15 years ago

10.7717/peerj.5048

Pathway analysis identifies altered mitochondrial metabolism, neurotransmission, structural pathways and complement cascade in retina/RPE/ choroid in chick model of form-deprivation myopia
Cited by: 19
Author(s): Loretta Giummarra, Sheila G. Crewther, Nina Riddell, Melanie Murphy, David P. Crewther
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.9451

Subcellular compartmentalization of the plant antioxidant system: an integrated overview
Cited by: 12
Author(s): Aleksandr Bobrovskikh, У. С. Зубаирова, Alexey Kolodkin, А. В. Дорошков
Software Mentions: 1
Published: over 4 years ago

10.1111/pbi.13105

A wheat NAC interacts with an orphan protein and enhances resistance to Fusarium head blight disease
Cited by: 43
Author(s): Alexandre Perochon, Amal Kahla, Monika Vranić, Jia Jianguang, Keshav B. Malla, Melanie Craze, Emma J. Wallington, Fiona M. Doohan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1000692

Expression Quantitative Trait Loci Are Highly Sensitive to Cellular Differentiation State
Cited by: 91
Author(s): A.M. Gerrits, Yang Li, Bruno Tesson, Leonid Bystrykh, Ellen Weersing, Albertina Ausema, Bert Dontje, Xusheng Wang, Rainer Breitling, Ritsert C. Jansen, Gerald de Haan
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pgen.1005047

A Novel Feedback Loop That Controls Bimodal Expression of Genetic Competence
Cited by: 32
Author(s): Pamela Gamba, Martijs J. Jonker, Leendert W. Hamoen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0053349

Reduced RAN Expression and Disrupted Transport between Cytoplasm and Nucleus; A Key Event in Alzheimer’s Disease Pathophysiology
Cited by: 53
Author(s): Diego Mastroeni, Leonidas Chouliaras, Andrew Grover, Winnie S. Liang, Kevin Hauns, Joseph Rogers, Paul D. Coleman
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0012761

In Silico Identification of Carboxylate Clamp Type Tetratricopeptide Repeat Proteins in Arabidopsis and Rice As Putative Co-Chaperones of Hsp90/Hsp70
Cited by: 77
Author(s): Bishun Deo Prasad, Shilpi Goel, Priti Krishna
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0141591

Cardiac-Specific Activation of IKK2 Leads to Defects in Heart Development and Embryonic Lethality
Cited by: 7
Author(s): Baerbel Kraut, Harald J. Maier, Enikoe Kokai, Katja Fiedler, Thomas Boettger, Annett Illing, Sawa Kostin, Paul Walther, Thomas Braun, Thomas Wirth
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0085136

Global State Measures of the Dentate Gyrus Gene Expression System Predict Antidepressant-Sensitive Behaviors
Cited by: 20
Author(s): Benjamin Adam Samuels, E. David Leonardo, Amanda Williams, Erik H. F. Wong, Addie May I. Nesbitt, Richard D. McCurdy, René Hen, Mark D. Alter
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0058402

A Discrete Event Simulation Model for Evaluating the Performances of an M/G/C/C State Dependent Queuing System
Cited by: 27
Author(s): Ruzelan Khalid, Mohd Kamal Mohd Nawawi, Luthful Alahi Kawsar, Noraida Abdul Ghani, Anton Abdulbasah Kamil, Adli Mustafa
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0057428

Dullard/Ctdnep1 Modulates WNT Signalling Activity for the Formation of Primordial Germ Cells in the Mouse Embryo
Cited by: 26
Author(s): Satomi Tanaka, Akihiro Nakane, Yasuka L. Yamaguchi, Takeshi Terabayashi, Takaya Abe, Kazuki Nakao, Makoto Asashima, Kirsten A. Steiner, Patrick Tam, Ryuichi Nishinakamura
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0114004

The Widely Used ATB FUNGUS 3 Automated Readings in China and Its Misleading High MICs of Candida spp. to Azoles: Challenges for Developing Countries' Clinical Microbiology Labs
Cited by: 15
Author(s): Li Zhang, He Wang, Meng Xiao, Timothy Kudinha, Lei-Li Mao, Hao-Ran Zhao, Fanrong Kong, Yingchun Xu
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0256625

Plant and algal lysophosphatidic acid acyltransferases increase docosahexaenoic acid accumulation at the sn-2 position of triacylglycerol in transgenic Arabidopsis seed oil
Cited by: 1
Author(s): Laura L. Wayne, Daniel Gachotte, Paul R. Graupner, Yelena Adelfinskaya, David McCaskill, James G. Metz, Ross Zirkle, Terence A. Walsh
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0053192

11β-Hydroxysteroid Dehydrogenase Type 1 Gene Knockout Attenuates Atherosclerosis and In Vivo Foam Cell Formation in Hyperlipidemic apoE−/− Mice
Cited by: 28
Author(s): Ricardo Alexandrino Garcia, Debra Search, John A. Lupisella, Jacek Ostrowski, Bo Guan, Jian Chen, Wen-Pin Yang, Amy Truong, Aiqing He, Rongan Zhang, Mujing Yan, Samuel Hellings, Peter S. Gargalovic, Carol S. Ryan, Linda Watson, Robert Langish, Petia Shipkova, Nancy Carson, Joseph R. Taylor, Richard Yang, George Psaltis, Thomas Harrity, Jeffrey A. Robl, David Gordon
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0160822

Modified AS1411 Aptamer Suppresses Hepatocellular Carcinoma by Up-Regulating Galectin-14
Cited by: 36
Author(s): Yuri Cho, Yun Bin Lee, Jeong Hoon Lee, Dong Hoon Lee, Eun Ju Cho, Su Jong Yu, Yoon Jun Kim, Jong In Kim, Jong Hun Im, Jung Hwan Lee, Eun‐Suok Oh, Jung Hwan Yoon
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0024136

Ehrlichia chaffeensis Transcriptome in Mammalian and Arthropod Hosts Reveals Differential Gene Expression and Post Transcriptional Regulation
Cited by: 52
Author(s): Jeeba A. Kuriakose, Simone Miyashiro, Tian Luo, Bing Zhu, Jere W. McBride
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0219201

Genetic and clinical predictors of CD4 lymphocyte recovery during suppressive antiretroviral therapy: Whole exome sequencing and antiretroviral therapy response phenotypes
Cited by: 5
Author(s): Ruth M. Greenblatt, Peter Bacchetti, Ross Boylan, Kord M. Kober, Günter Springer, Kathryn Anastos, Michael P. Busch, Mardge H. Cohen, Seble Kassaye, Deborah Gustafson, Bradley E. Aouizerat, Women’s Interagency Hiv Study
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0102909

Systems-Based Analyses of Brain Regions Functionally Impacted in Parkinson's Disease Reveals Underlying Causal Mechanisms
Cited by: 68
Author(s): Brigit E. Riley, Shyra J. Gardai, Dorothea Emig-Agius, Marina Bessarabova, Alexander E. Ivliev, Birgitt Schüle, Jeff Alexander, William H. Wallace, Glenda M. Halliday, J. William Langston, Scott Braxton, Ted Yednock, Thomas A. Shaler, Jennifer Johnston
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0027745

Sensitivity of Genome-Wide-Association Signals to Phenotyping Strategy: The PROP-TAS2R38 Taste Association as a Benchmark
Cited by: 41
Author(s): Ulrich K. Genick, Zoltán Kutalik, Mirko Ledda, Maria C. Souza Destito, Milena Monteiro de Souza, Cintia A. Cirillo, Nicolas Godinot, Nathalie Martin, Edgard Morya, Koichi Sameshima, Sven Bergmann, Johannes le Coutre
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0062994

Similar Properties of Chondrocytes from Osteoarthritis Joints and Mesenchymal Stem Cells from Healthy Donors for Tissue Engineering of Articular Cartilage
Cited by: 56
Author(s): Amilton M. Fernandes, Sarah R. Herlofsen, Tommy A. Karlsen, Axel M. Küchler, Yngvar Fløisand, Jan E. Brinchmann
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0170735

In vivo differentiation of induced pluripotent stem cells into neural stem cells by chimera formation
Cited by: 12
Author(s): Hyun Woo Choi, Yean Ju Hong, Jong Soo Kim, Hyuk Song, Ssang-Goo Cho, Hojae Bae, Changsung Kim, Sung June Byun, Jeong Tae
Software Mentions: 1
Published: almost 8 years ago

10.3390/cancers13112586

Survival-Critical Genes Associated with Copy Number Alterations in Lung Adenocarcinoma
Cited by: 3
Author(s): Chinthalapally V. Rao, Chao Xu, Mudassir Farooqui, Yuting Zhang, Adam S. Asch, Hiroshi Yamada
Software Mentions: 1
Published: over 3 years ago

10.1007/s00018-020-03487-x

Update on SLC6A14 in lung and gastrointestinal physiology and physiopathology: focus on cystic fibrosis
Cited by: 17
Author(s): Manon Ruffin, J. Mercier, Claire Calmel, Julie Mésinèle, J. M. Bigot, Erika N. Sutanto, Anthony Kicic, Harriet Corvol, Loïc Guillot
Software Mentions: 1
Published: over 4 years ago

10.1242/dev.173377

Paf1c defects challenge the robustness of flower meristem termination in<i>Arabidopsis thaliana</i>
Cited by: 7
Author(s): Kateryna Fal, Matthieu Cortes, Mengying Liu, Sam Collaudin, Pradeep Das, Olivier Hamant, Christophe Tréhin
Software Mentions: 1
Published: almost 6 years ago

10.1289/ehp.7947

Discrimination of Vanadium from Zinc Using Gene Profiling in Human Bronchial Epithelial Cells
Cited by: 20
Author(s): Zhuowei Li, Jacqueline Stonehuerner, Robert B. Devlin, Yuh‐Chin T. Huang
Software Mentions: 1
Published: almost 19 years ago

10.1289/ehp.1408852

Novel Roles for Notch3 and Notch4 Receptors in Gene Expression and Susceptibility to Ozone-Induced Lung Inflammation in Mice
Cited by: 19
Author(s): Kirsten C. Verhein, Zachary R. McCaw, Wesley Gladwell, Shweta Trivedi, Pierre R. Bushel, Steven R. Kleeberger
Software Mentions: 1
Published: over 9 years ago

10.1155/2016/5060757

Chinese Herbal Medicine Fuzheng Kang-Ai Decoction Inhibited Lung Cancer Cell Growth through AMPK<i>α</i>-Mediated Induction and Interplay of IGFBP1 and FOXO3a
Cited by: 10
Author(s): Fang Zheng, Jingjing Wu, Xiong Li, Qing Tang, Lijun Yang, Xiao Yang, Wanyin Wu, Swei Sunny Hann
Software Mentions: 1
Published: almost 9 years ago

10.12688/f1000research.3-55.v1

BioJS: an open source standard for biological visualisation – its status in 2014
Cited by: 22
Author(s): Manuel Corpas, Rafael C. Jiménez, Seth Carbon, Alex García, Leyla García, Tatyana Goldberg, John Gómez, Alexis Kalderimis, Suzanna Lewis, Ian Mulvany, Aleksandra Pawlik, Francis Rowland, Gustavo Salazar, Franziska Schreiber, Ian Sillitoe, William Spooner, Anil Thanki, José Villaveces, Guy Yachdav, Henning Hermjakob
Software Mentions: 1
Published: over 10 years ago

10.3389/fcimb.2020.00163

Infection of Monocytes From Tuberculosis Patients With Two Virulent Clinical Isolates of Mycobacterium tuberculosis Induces Alterations in Myeloid Effector Functions
Cited by: 8
Author(s): Lelia Lavalett, Héctor Ortega, Luis F. Barrera
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2021.627117

Screening and Identification of Key Microenvironment-Related Genes in Non-functioning Pituitary Adenoma
Cited by: 6
Author(s): Jing Guo, Qiuyue Fang, Yulou Liu, Weiyan Xie, Chuzhong Li, Yazhou Zhang
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2020.565438

The Transcriptomic Signature of Tigecycline in Acinetobacter baumannii
Cited by: 9
Author(s): Liping Li, Karl A. Hassan, Sasha G. Tetu, Varsha Naidu, Alaska Pokhrel, Amy K. Cain, Ian T. Paulsen
Software Mentions: 1
Published: about 4 years ago

10.3389/fnins.2016.00445

Surface EMG-based Sketching Recognition Using Two Analysis Windows and Gene Expression Programming
Cited by: 12
Author(s): Zhongliang Yang, Yumiao Chen
Software Mentions: 1
Published: about 8 years ago

10.3389/fphys.2018.01572

Mesenchymal Stem Cells Shift Mitochondrial Dynamics and Enhance Oxidative Phosphorylation in Recipient Cells
Cited by: 27
Author(s): Christopher Newell, Rasha Sabouny, Dustin S. Hittel, Timothy E. Shutt, Aneal Khan, Matthias S. Klein, Jane Shearer
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2014.00163

Evaluation and integration of disparate classification systems for clefts of the lip
Cited by: 22
Author(s): Kathie Wang, Carrie L. Heike, Melissa D. Clarkson, José L. V. Mejino, James F. Brinkley, Raymond Tse, Craig B. Birgfeld, David Fitzsimons, Timothy C. Cox
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2019.00196

Angiosperm-Wide and Family-Level Analyses of AP2/ERF Genes Reveal Differential Retention and Sequence Divergence After Whole-Genome Duplication
Cited by: 16
Author(s): Linbo Wang, Hong Mā, Juan Lin
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10020171

IPCT: Integrated Pharmacogenomic Platform of Human Cancer Cell Lines and Tissues
Cited by: 3
Author(s): Muhammad Shoaib, Adnan Ahmad Ansari, Farhan Haq, Sung‐Min Ahn
Software Mentions: 1
Published: over 5 years ago

10.3390/genes11111326

Exploring the Role of Contactins across Psychological, Psychiatric and Cardiometabolic Traits within UK Biobank
Cited by: 5
Author(s): Julia Morris, Soddy Sau Yu Leung, Mark E.S. Bailey, Breda Cullen, Amy Ferguson, Nicholas Graham, Keira J.A. Johnston, Donald M. Lyall, Joey Ward, Daniel J. Smith, Rona J. Strawbridge
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes12040532

Hypertension in African Populations: Review and Computational Insights
Cited by: 10
Author(s): Sihle E. Mabhida, Lebohang Mashatola, Mandeep Kaur, Jyoti Sharma, Teke Apalata, Babu Muhamed, Mongi Benjeddou, Rabia Johnson
Software Mentions: 1
Published: over 3 years ago

10.1186/gb-2010-11-11-r111

Reduced levels of two modifiers of epigenetic gene silencing, Dnmt3a and Trim28, cause increased phenotypic noise
Cited by: 68
Author(s): Nadia C Whitelaw, Suyinn Chong, Daniel K. Morgan, Colm E. Nestor, Timothy J. C. Bruxner, Alyson Ashe, Eleanore Lambley, Richard R. Meehan, Emma Whitelaw
Software Mentions: 1
Published: about 14 years ago

10.1186/s41232-020-00129-4

Bromodomain-containing protein 4 regulates interleukin-34 expression in mouse ovarian cancer cells
Cited by: 4
Author(s): Nanumi Han, Delnur Anwar, Naoki Hama, Takuto Kobayashi, Haruo Suzuki, Hidehisa Takahashi, Haruka Wada, Ryo Otsuka, Muhammad Baghdadi, K. Seino
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.ppat.1005549

Early T Cell Recognition of B Cells following Epstein-Barr Virus Infection: Identifying Potential Targets for Prophylactic Vaccination
Cited by: 35
Author(s): Jill Brooks, Heather M. Long, Rose J. Tierney, Claire Shannon-Lowe, Alison M. Leese, Martin Fitzpatrick, Graham S. Taylor, Alan B. Rickinson
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006687

Sequential inflammatory processes define human progression from M. tuberculosis infection to tuberculosis disease
Cited by: 161
Author(s): Thomas J. Scriba, Adam Penn-Nicholson, Steven G. Smith, Thomas Hraha, Ethan Thompson, David Sterling, Elisa Nemes, Fatoumatta Darboe, Sara Suliman, Lynn M. Amon, Hassan Mahomed, Mzwandile Erasmus, Wendy Whatney, John L. Johnson, W. Henry Boom, Mark Hatherill, Joe Valvo, Mary Ann De Groote, Urs A. Ochsner, Alan Aderem, Willem A. Hanekom, Daniel E. Zak
Software Mentions: 1
Published: almost 7 years ago

10.1186/1477-5956-5-11

Bacillus anthracis secretome time course under host-simulated conditions and identification of immunogenic proteins
Cited by: 46
Author(s): Alexander Walz, Cesar V. Mujer, Joseph P. Connolly, Tim Alefantis, Ryan D. Chafin, Clarissa Dake, Jessica Whittington, Sudarshan Kumar, Akhtar S. Khan, Vito G. DelVecchio
Software Mentions: 1
Published: almost 18 years ago

10.1186/1477-7827-10-6

Aberrant phenotypes of transgenic mice expressing dimeric human erythropoietin
Cited by: 2
Author(s): Seong-Jo Yun, Purevjargal Naidansuren, Bo-Woong Sim, Jong-Ju Park, Cha-Won Park, Tseeleema Nanjidsuren, Myung‐Hwa Kang, Sung Yeoun Hwang, Jong Taek Yoon, Kwan‐Sik Min
Software Mentions: 1
Published: almost 13 years ago

10.1038/srep10370

ImmuSort, a database on gene plasticity and electronic sorting for immune cells
Cited by: 25
Author(s): Pingzhang Wang, Yehong Yang, Wenling Han, Dalong Ma
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-09866-y

Mechanism and DNA-based detection of field-evolved resistance to transgenic Bt corn in fall armyworm (Spodoptera frugiperda)
Cited by: 99
Author(s): Rahul Banerjee, James Hasler, Robert L. Meagher, Rod Nagoshi, Lucas Isaac Hietala, Fangneng Huang, Kenneth E. Narva, Juan Luís Jurat-Fuentes
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-17155-x

Free SepF interferes with recruitment of late cell division proteins
Cited by: 8
Author(s): Yongqiang Gao, Michaela Wenzel, Martijs J. Jonker, Leendert W. Hamoen
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-29791-y

Venom Complexity in a Pitviper Produced by Facultative Parthenogenesis
Cited by: 9
Author(s): Juan J. Calvete, Nicholas R. Casewell, Ulises Hernández-Guzmán, Sarai Quesada-Bernat, Libia Sanz, Darin R. Rokyta, Darren Storey, Laura-Oana Albulescu, Wolfgang Wüster, Charles F. Smith, Gordon W. Schuett, Warren Booth
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-41524-3

The LRRC8-mediated volume-regulated anion channel is altered in glaucoma
Cited by: 7
Author(s): Xavier Gasull, Marta Castany, Aida Castellanos, Mikel Rezola, Alba Andrés‐Bilbé, María Isabel Canut, Raúl Estévez, Teresa Borrás, Núria Comes
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88129-3

Transcriptome integrated metabolic modeling of carbon assimilation underlying storage root development in cassava
Cited by: 7
Author(s): Ratchaprapa Kamsen, Saowalak Kalapanulak, Porntip Chiewchankaset, Treenut Saithong
Software Mentions: 1
Published: over 3 years ago

10.1186/2044-5040-2-21

A role for RNA post-transcriptional regulation in satellite cell activation
Cited by: 41
Author(s): Nicholas H. Farina, Melissa Hausburg, Nicole Dalla Betta, Crystal Pulliam, Deepak Srivastava, D.D.W. Cornelison, Bradley B. Olwin
Software Mentions: 1
Published: about 12 years ago

10.3390/toxins8010009

Snake Venomics and Antivenomics of Bothrops diporus, a Medically Important Pitviper in Northeastern Argentina
Cited by: 21
Author(s): Libia Sanz, Juan J. Calvete, Davinia Plá
Software Mentions: 1
Published: almost 9 years ago

10.3390/toxins8060178

Venomic Analysis of the Poorly Studied Desert Coral Snake, Micrurus tschudii tschudii, Supports the 3FTx/PLA2 Dichotomy across Micrurus Venoms
Cited by: 44
Author(s): Libia Sanz, Davinia Plá, Alícia Pérez, Yania Rodríguez, Alfonso Zavaleta, María Salas, Bruno Lomonte, Juan J. Calvete
Software Mentions: 1
Published: over 8 years ago

10.22088/IJMCM.BUMS.10.1.34

Differential Expression and Prognostic Significance of STARD3 Gene in Breast Carcinoma.
Cited by: 4
Author(s): Abdul Fattah Salah Fararjeh, Ali Khader, Ezidin G. Kaddumi, Maher Obeidat, O’la Al-Fawares
Software Mentions: 1
Published: almost 4 years ago

10.3892/ol.2015.2917

Identification of differentially-expressed genes by DNA methylation in cervical cancer
Cited by: 13
Author(s): Heun‐Sik Lee, Jun Ho Yun, Junghee Jung, Young Yang, Bong‐Jo Kim, Sungjong Lee, Joo Hee Yoon, Yun-Seob Moon, Jeongmin Kim, Yongil Kwon
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms19071937

The Olive Biophenols Oleuropein and Hydroxytyrosol Selectively Reduce Proliferation, Influence the Cell Cycle, and Induce Apoptosis in Pancreatic Cancer Cells
Cited by: 71
Author(s): Chloe D. Goldsmith, Danielle R. Bond, Helen Jankowski, Judith Weidenhofer, Costas E. Stathopoulos, Paul D. Roach, Christopher J. Scarlett
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21197388

Is the Secret of VDAC Isoforms in Their Gene Regulation? Characterization of Human VDAC Genes Expression Profile, Promoter Activity, and Transcriptional Regulators
Cited by: 15
Author(s): Federica Zinghirino, Xena Giada Pappalardo, Angela Messina, Francesca Guarino, Vito De Pinto
Software Mentions: 1
Published: about 4 years ago

10.18632/oncotarget.8701

Epigenetic reader BRD4 inhibition as a therapeutic strategy to suppress E2F2-cell cycle regulation circuit in liver cancer
Cited by: 40
Author(s): Seong Hwi Hong, Jung Woo Eun, Sung Kyung Choi, Qingyu Shen, Wahn Soo Choi, Jeung‐Whan Han, Suk Woo Nam, Jueng Soo You
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.14861

Generation of <i>in vivo</i> neural stem cells using partially reprogrammed cells defective in <i>in vitro</i> differentiation potential
Cited by: 4
Author(s): Jong Soo Kim, Yean Ju Hong, Hyun Woo Choi, Hyuk Song, Sung June Byun, Jeong Tae
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.14755

RNA binding motif protein 3: a potential biomarker in cancer and therapeutic target in neuroprotection
Cited by: 29
Author(s): Ren-Bin Zhou, Xiaoli Lü, Chenyan Zhang, Da‐Chuan Yin
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.23846

Metabolic characteristics of solid pseudopapillary neoplasms of the pancreas: their relationships with high intensity 18F-FDG PET images
Cited by: 9
Author(s): Min Hee Park, Ho Kyoung Hwang, Mijin Yun, Woo Jung Lee, Hoguen Kim, Chang Moo Kang
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.24480

Integrated DNA methylation analysis identifies topographical and tumoral biomarkers in pilocytic astrocytomas
Cited by: 17
Author(s): Manila Antonelli, Antonio Fadda, Eleonora Loi, Loredana Moi, Cesare Zavattari, Pia Sulas, Davide Gentilini, Cinzia Cameli, Elena Bacchelli, Manuela Badiali, Antonella Arcella, Isabella Morra, Felice Giangaspero, Patrizia Zavattari
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.24525

Trib2 expression in granulocyte-monocyte progenitors drives a highly drug resistant acute myeloid leukaemia linked to elevated Bcl2
Cited by: 16
Author(s): Caitríona O’Connor, Krishna C. Yalla, Mara Salomè, Hothri A. Moka, Eduardo Gómez-Castañeda, Patrick A. Eyers, Karen Keeshan
Software Mentions: 1
Published: over 6 years ago

10.1590/1678-9199-JVATITD-2019-0103

Venomics and antivenomics of the poorly studied Brazil’s lancehead, Bothrops brazili (Hoge, 1954), from the Brazilian State of Pará
Cited by: 13
Author(s): Libia Sanz, Alícia Pérez, Sarai Quesada-Bernat, Rafaela Diniz-Sousa, Leonardo Azevedo Calderon, Andreimar M. Soares, Juan J. Calvete, Cléopatra A.S. Caldeira
Software Mentions: 1
Published: almost 5 years ago

10.18632/aging.202730

A prognostic model for melanoma patients on the basis of immune-related lncRNAs
Cited by: 12
Author(s): Yao Wang, Hongjun Ba, Xin Wen, Min Zhou, Can Küçük, Luca Tamagnone, Wei Li, Hua You
Software Mentions: 1
Published: over 3 years ago