Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Differential

https://packages.ecosyste.ms/registries/pypi.org/packages/Differential

a Python script for easy uploading torrents to varies PT sites.
42 versions
Latest release: over 2 years ago
40 downloads last month

Papers Mentioning Differential 20

10.1038/s41598-020-76769-w

GIANT: galaxy-based tool for interactive analysis of transcriptomic data
Cited by: 8
Author(s): Jimmy Vandel, Céline Gheeraert, Bart Staels, Jérôme Eeckhoute, Philippe Lefèbvre, Julie Dubois-Chevalier
Software Mentions: 5
Published: about 4 years ago

10.1016/j.cell.2017.07.025

Heterogeneous Tumor-Immune Microenvironments among Differentially Growing Metastases in an Ovarian Cancer Patient
Cited by: 338
Author(s): Alejandro Jiménez-Sánchez, Danish Memon, Stephane Pourpe, Harini Veeraraghavan, Yanyun Li, Hebert Alberto Vargas, Michael B. Gill, Kay J. Park, Oliver Zivanovic, Jason Konner, Jacob Ricca, Dmitriy Zamarin, Tyler Walther, Carol Aghajanian, Jedd D. Wolchok, Evis Sala, Taha Merghoub, Alexandra Snyder, Martin L. Miller
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pcbi.1000792

Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC)
Cited by: 74
Author(s): James A. Eddy, Leroy Hood, Nathan D. Price, Donald Geman
Software Mentions: 4
Published: over 14 years ago

10.1016/j.csbj.2016.11.005

Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics
Cited by: 102
Author(s): Karel Sedlář, Kristyna Kupkova, Ivo Provazník
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-018-19453-4

Investigation of Candida parapsilosis virulence regulatory factors during host-pathogen interaction
Cited by: 19
Author(s): Renáta Tóth, Vitor Cabral, Ernst Thuer, Flóra Bohner, Tibor Németh, Csaba Papp, Leonardo Nimrichter, Molnár Gergő, Csaba Vágvölgyi, Toni Gabaldón, Joshua D. Nosanchuk, Attila Gácser
Software Mentions: 3
Published: almost 7 years ago

10.3390/genes6041076

Epigenetic Heterogeneity of B-Cell Lymphoma: Chromatin Modifiers
Cited by: 14
Author(s): Lydia Hopp, Lilit Nersisyan, Henry Löffler-Wirth, Arsen Arakelyan, Hans Binder
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0076694

Transcriptional Analysis of Aggressiveness and Heterogeneity across Grades of Astrocytomas
Cited by: 7
Author(s): Chun-Jing Wang, Cory C. Funk, James A. Eddy, Nathan D. Price
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-020-60133-z

MicroRNA sequencing of rat hippocampus and human biofluids identifies acute, chronic, focal and diffuse traumatic brain injuries
Cited by: 15
Author(s): Harris A. Weisz, Deborah Kennedy, Steven G. Widen, Heidi Spratt, Stacy L. Sell, Christine Bailey, Melinda Sheffield‐Moore, Douglas S. DeWitt, Donald S. Prough, Harvey S. Levin, Claudia S. Robertson, Helen L. Hellmich
Software Mentions: 2
Published: over 4 years ago

10.1093/hmg/ddaa096

The Tudor-domain protein TDRD7, mutated in congenital cataract, controls the heat shock protein HSPB1 (HSP27) and lens fiber cell morphology
Cited by: 26
Author(s): Carrie E. Barnum, Salma Al Saai, Shireen Patel, Catherine Cheng, Deepti Anand, Xiaolu Xu, Soma Dash, Archana D. Siddam, Lisa Glazewski, Emily Paglione, Shawn W. Polson, Shinichiro Chuma, Robert W. Mason, Shuo Wei, Mona Batish, Velia M. Fowler, Salil A. Lachke
Software Mentions: 1
Published: over 4 years ago

10.1155/2014/395905

Comparative Analysis of<i>Sorghum bicolor</i>Proteome in Response to Drought Stress and following Recovery
Cited by: 48
Author(s): Christoph Jedmowski, Ahmed Ashoub, Tobias Beckhaus, Thomas Berberich, Michael Karas, Wolfgang Brüggemann
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms22179604

The Transcriptional Landscape and Hub Genes Associated with Physiological Responses to Drought Stress in Pinus tabuliformis
Cited by: 8
Author(s): Tariq Pervaiz, Shuang-Wei Liu, Saleem Uddin, Muhammad Waqas Amjid, Shihui Niu, Harry X. Wu
Software Mentions: 1
Published: about 3 years ago

10.14336/AD.2017.0710

Aging Systemic Milieu Impairs Outcome after Ischemic Stroke in Rats
Cited by: 14
Author(s): Mengxiong Pan, Peng Wang, Chengcai Zheng, Hongxia Zhang, Siyang Lin, Baiqi Shao, Qichuan Zhuge, Kunlin Jin
Software Mentions: 1
Published: almost 8 years ago

10.3791/945

Selective Labelling of Cell-surface Proteins using CyDye DIGE Fluor Minimal Dyes
Cited by: 10
Author(s): Åsa Hagner-McWhirter, Maria Winkvist, Stephanie Bourin, Rita Marouga
Software Mentions: 1
Published: almost 16 years ago

10.1186/1748-7188-2-5

GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data
Cited by: 10
Author(s): Koji Kadota, Ryoko Araki, Yuji Nakai, Masumi Abe
Software Mentions: 1
Published: over 17 years ago

10.1186/s12861-016-0111-3

Modular reorganization of the global network of gene regulatory interactions during perinatal human brain development
Cited by: 5
Author(s): Jimena Monzón‐Sandoval, Atahualpa Castillo-Morales, Araxi O. Urrutia, Humberto Gutiérrez
Software Mentions: 1
Published: over 8 years ago

10.3390/plants10071446

Current and Future Pathotyping Platforms for Plasmodiophora brassicae in Canada
Cited by: 4
Author(s): Heather H Tso, Leonardo Galindo‐González, Stephen E. Strelkov
Software Mentions: 1
Published: over 3 years ago

10.1155/2020/6138083

A Case of Vaping TCH Oil Leading to Vaping Associated Pulmonary Injury: Our Approach to Its Diagnosis, Management, and Recommendations
Cited by: 5
Author(s): Anshika Singh, Qiuxue Tan, Nicole M. Saccone, D. Lindner
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1003880

CTCF and Rad21 Act as Host Cell Restriction Factors for Kaposi's Sarcoma-Associated Herpesvirus (KSHV) Lytic Replication by Modulating Viral Gene Transcription
Cited by: 56
Author(s): Da Jiang Li, Dinesh Verma, Tim Mosbruger, Sankar Swaminathan
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12953-014-0059-9

Proteomics analysis of urine reveals acute phase response proteins as candidate diagnostic biomarkers for prostate cancer
Cited by: 54
Author(s): Katarina Davalieva, Sanja Kiprijanovska, Selim Komina, Gordana Petruševska, Natasha Chokrevska Zografska, Momir Polenaković
Software Mentions: 1
Published: almost 10 years ago

10.1128/mBio.00769-21

Endothelial Exosome Plays a Functional Role during Rickettsial Infection
Cited by: 14
Author(s): Yakun Liu, Changcheng Zhou, Zhengchen Su, Qing Chang, Yuan Qiu, Jiani Bei, Angelo Gaitas, Jie Xiao, Alexandra Drelich, Kamil Khanipov, Yang Jin, George Golovko, Taís B. Saito, Bin Gong
Software Mentions: 1
Published: over 3 years ago