Ecosyste.ms: Papers

10.1371/journal.pone.0019729

Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks
Cited by: 89
Author(s): Andrea Procaccini, Bryan Lunt, Hendrik Szurmant, Terence Hwa, Martin Weigt
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0117506

Integrated Analysis of Residue Coevolution and Protein Structures Capture Key Protein Sectors in HIV-1 Proteins
Cited by: 11
Author(s): Yuqi Zhao, Yanjie Wang, Yue‐Dong Gao, Gong‐Hua Li, Jing‐Fei Huang
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0164828

Simplified Acute Physiology Score II as Predictor of Mortality in Intensive Care Units: A Decision Curve Analysis
Cited by: 20
Author(s): Jérôme Allyn, Cyril Ferdynus, Mayara Talini Pereira Bohrer, Cécile Dalban, Dorothée Valance, Nicolas Allou
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0056255

The Impact of Global Warming and Anoxia on Marine Benthic Community Dynamics: an Example from the Toarcian (Early Jurassic)
Cited by: 80
Author(s): Silvia Danise, Richard J. Twitchett, Crispin T. S. Little, Marie-Émilie Clémence
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0190572

Plant community dynamics of lomas fog oasis of Central Peru after the extreme precipitation caused by the 1997-98 El Niño event
Cited by: 16
Author(s): Carolina Tovar, Edgar Sánchez Infantas, Vanessa Teixeira Roth
Software Mentions: 2
Published: over 6 years ago

10.3390/e21111090

Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data
Cited by: 20
Author(s): Edwin Rodríguez Horta, Pierre Barrat-Charlaix, Martin Weigt
Software Mentions: 2
Published: almost 5 years ago

10.3390/e22060627

Information Theory in Computational Biology: Where We Stand Today
Cited by: 25
Author(s): Pritam Chanda, Eduardo de Freitas Costa, Jie Hu, Shravan Sukumar, John Van Hemert, Rasna R. Walia
Software Mentions: 2
Published: over 4 years ago

10.12688/f1000research.11251.2

Protein sites with more coevolutionary connections tend to evolve slower, while more variable protein families acquire higher coevolutionary connections
Cited by: 1
Author(s): Sapan Mandloi, Saikat Chakrabarti
Software Mentions: 2
Published: about 7 years ago

10.3389/fgene.2020.00005

Pathogenic Gene Prediction Algorithm Based on Heterogeneous Information Fusion
Cited by: 5
Author(s): Chunyu Wang, Jie Zhang, Xueping Wang, Koeun Han, Maozu Guo
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.00995

Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities
Cited by: 87
Author(s): Duo Jiang, Courtney R. Armour, Chenxiao Hu, Meng Meng, Chuan Tian, Thomas J. Sharpton, Yuan Jiang
Software Mentions: 2
Published: almost 5 years ago

10.3389/fonc.2021.652553

Derivation and Validation of a Prognostic Scoring Model Based on Clinical and Pathological Features for Risk Stratification in Oral Squamous Cell Carcinoma Patients: A Retrospective Multicenter Study
Cited by: 4
Author(s): Jiaju Zhou, Huan Li, Bin Cheng, Ruoyan Cao, Fengyuan Zou, Dong Yang, Lei Xiang, Ming Song, Tong Wu
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.563666

High Expression of Succinate Dehydrogenase Subunit A Which Is Regulated by Histone Acetylation, Acts as a Good Prognostic Factor of Multiple Myeloma Patients
Cited by: 11
Author(s): Yang Sun, Zu-De Xu, Junkang Jiang, Tianhong Xu, Jiadai Xu, Peng Liu
Software Mentions: 2
Published: about 4 years ago

10.3389/fonc.2021.659313

Markers of Prognosis for Early Stage Cervical Cancer Patients (Stage IB1, IB2) Undergoing Surgical Treatment
Cited by: 2
Author(s): Chen Xu, Ma T, Hongzan Sun, Xiaohan Li, Song Gao
Software Mentions: 2
Published: over 3 years ago

10.1002/acm2.12800

Dynamic conformal arcs for lung stereotactic body radiation therapy: A comparison with volumetric‐modulated arc therapy
Cited by: 4
Author(s): Rasmus Bokrantz, Minna Wedenberg, Peter Sandwall
Software Mentions: 2
Published: over 4 years ago

10.1038/srep19312

Ligand-based virtual screening and inductive learning for identification of SIRT1 inhibitors in natural products
Cited by: 17
Author(s): Yu-nan Sun, Hui Zhou, Hongmei Zhu, Siu-wai Leung
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-04001-3

Revealing protein networks and gene-drug connectivity in cancer from direct information
Cited by: 13
Author(s): Xian Jiang, Emmanuel Martinez-Ledesma, Faruck Morcos
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-05404-y

Characterization of short- and long-term mechanical sensitisation following surgical tail amputation in pigs
Cited by: 33
Author(s): Pierpaolo Di Giminiani, Sandra A. Edwards, Emma Malcolm, Matthew C. Leach, Mette S. Herskin, DA Sandercock
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-55118-6

Deep Analysis of Residue Constraints (DARC): identifying determinants of protein functional specificity
Cited by: 12
Author(s): Farzaneh Tondnevis, Elizabeth E. Dudenhausen, Andrew M. Miller, Robert McKenna, Stephen F. Altschul, Linda B. Bloom, Andrew F. Neuwald
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-74591-y

Computational pipeline to probe NaV1.7 gain-of-function variants in neuropathic painful syndromes
Cited by: 3
Author(s): Alberto Toffano, Giacomo Chiarot, Stefano Zamuner, Margherita Marchi, Erika Salvi, Stephen G. Waxman, Catharina G. Faber, Giuseppe Lauria, Andrea Giacometti, Marta Simeoni
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-020-78520-x

The novel ECF56 SigG1-RsfG system modulates morphological differentiation and metal-ion homeostasis in Streptomyces tsukubaensis
Cited by: 4
Author(s): Rute Oliveira, Matthew J. Bush, Sílvia Pires, Govind Chandra, Delia Casas-Pastor, Georg Fritz, Marta V. Mendes
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-95889-5

Studying the effect of alpha-synuclein and Parkinson’s disease linked mutants on inter pathway connectivities
Cited by: 0
Author(s): Sagnik Sen, Ashmita Dey, Ujjwal Maulik
Software Mentions: 2
Published: about 3 years ago

10.3390/s18061804

Average Accumulative Based Time Variant Model for Early Diagnosis and Prognosis of Slowly Varying Faults
Cited by: 6
Author(s): Funa Zhou, Ju H. Park, Chenglin Wen, Po Hu
Software Mentions: 2
Published: over 6 years ago

10.3390/s19153355

An Innovative Method for Preserving Privacy in Internet of Things
Cited by: 37
Author(s): Mohammad Yamin, Yazed Alsaawy, Ahmad Alkhodre, Adnan Ahmed Abi Sen
Software Mentions: 2
Published: about 5 years ago

10.1186/s13063-018-2815-0

Evaluating the impact of Marie Stopes International’s digital family planning counselling application on the uptake of long-acting and permanent methods of contraception in Vietnam and Ethiopia: a study protocol for a multi-country cluster randomised controlled trial
Cited by: 8
Author(s): Laura Bates, Joseph P. Hicks, John Walley, Emily Robinson
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.34300

Coevolution-based inference of amino acid interactions underlying protein function
Cited by: 97
Author(s): Víctor Salinas, Rama Ranganathan
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.09532

Residue proximity information and protein model discrimination using saturation-suppressor mutagenesis
Cited by: 34
Author(s): Anusmita Sahoo, Shruti Khare, Sivasankar Devanarayanan, Pankaj Jain, Raghavan Varadarajan
Software Mentions: 2
Published: over 8 years ago

10.1186/s12967-020-02608-1

Combining epigenetic and clinicopathological variables improves specificity in prognostic prediction in clear cell renal cell carcinoma
Cited by: 4
Author(s): Emma Andersson-Evelönn, Linda Vidman, David Källberg, Mattias Landfors, Xijia Liu, Börje Ljungberg, Magnus Hultdin, Patrik Rydén, Sofie Degerman
Software Mentions: 2
Published: almost 4 years ago

10.1080/21623945.2021.1970341

A novel immune-related genes signature after bariatric surgery is histologically associated with non-alcoholic fatty liver disease
Cited by: 15
Author(s): Yancheng Song, Jan Zhang, Hexiang Wang, Dong Guo, Chentong Yuan, Bo Liu, Hao Zhong, Dongmei Li, Yu Li
Software Mentions: 2
Published: over 3 years ago