Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: DAWG

https://packages.ecosyste.ms/registries/pypi.org/packages/DAWG

Fast and memory efficient DAWG (DAFSA) for Python
25 versions
Latest release: almost 5 years ago
1 dependent package
24,893 downloads last month

Papers Mentioning DAWG 19

10.12688/wellcomeopenres.14265.2

Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study
Cited by: 37
Author(s): John A. Lees, Michaela Kendall, Julian Parkhill, Caroline Colijn, SD Bentley, Rachel Harris
Software Mentions: 5
Published: over 6 years ago

10.1186/1471-2105-12-184

SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation
Cited by: 19
Author(s): Catherine L. Anderson, Cory L. Strope, Etsuko N. Moriyama
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pcbi.1000392

Fast Statistical Alignment
Cited by: 303
Author(s): Robert K. Bradley, Anjeanette Roberts, Michael Smoot, Sudeep Juvekar, Jaeyoung Do, Colin N. Dewey, Ian Holmes, Lior Pachter
Software Mentions: 4
Published: over 15 years ago

10.1186/gb-2008-9-10-r147

Tools for simulating evolution of aligned genomic regions with integrated parameter estimation
Cited by: 24
Author(s): Avinash V. Varadarajan, Robert K. Bradley, Ian Holmes
Software Mentions: 3
Published: almost 17 years ago

10.1186/s12859-017-1665-1

Solving the master equation for Indels
Cited by: 18
Author(s): Ian Holmes
Software Mentions: 3
Published: over 7 years ago

10.1186/s12864-016-3037-z

Recombination-driven generation of the largest pathogen repository of antigen variants in the protozoan Trypanosoma cruzi
Cited by: 30
Author(s): D. Brent Weatherly, Duo Peng, Rick L. Tarleton
Software Mentions: 3
Published: about 8 years ago

10.1186/1471-2105-7-471

The accuracy of several multiple sequence alignment programs for proteins
Cited by: 141
Author(s): Paulo Nuin, Zhouzhi Wang, Elisabeth R. M. Tillier
Software Mentions: 2
Published: about 18 years ago

10.2174/138920210790218007

Simulation of Genes and Genomes Forward in Time
Cited by: 48
Author(s): Antonio Carvajal-Rodríguez
Software Mentions: 2
Published: over 14 years ago

10.1186/s12862-014-0266-0

Concatenated alignments and the case of the disappearing tree
Cited by: 48
Author(s): Thorsten Thiergart, Giddy Landan, William Martin
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2105-14-66

Local search for the generalized tree alignment problem
Cited by: 18
Author(s): Andrés Varón, Ward C. Wheeler
Software Mentions: 2
Published: over 11 years ago

10.1186/s12859-015-0675-0

Phylogenetic network analysis as a parsimony optimization problem
Cited by: 41
Author(s): Ward C. Wheeler
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2105-12-10

PICS-Ord: unlimited coding of ambiguous regions by pairwise identity and cost scores ordination
Cited by: 17
Author(s): Robert Lücking, Brendan P. Hodkinson, Alexandros Stamatakis, Reed A. Cartwright
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0032031

CenSeam, an International Program on Seamounts within the Census of Marine Life: Achievements and Lessons Learned
Cited by: 14
Author(s): Karen Stocks, Malcolm R. Clark, Ashley A. Rowden, Mireille Consalvey, Thomas A. Schlacher
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0014689

The Barcode of Life Data Portal: Bridging the Biodiversity Informatics Divide for DNA Barcoding
Cited by: 24
Author(s): Indra Neil Sarkar, Michael Trizna
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0215288

MergedTrie: Efficient textual indexing
Cited by: 3
Author(s): Antonio Ferrández, Jesús Peral
Software Mentions: 1
Published: over 5 years ago

10.1155/2016/1782732

Use of a Novel Grammatical Inference Approach in Classification of Amyloidogenic Hexapeptides
Cited by: 7
Author(s): Wojciech Wieczorek, Olgierd Unold
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12859-015-0516-1

Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs
Cited by: 16
Author(s): Joseph L. Herman, Adam M. Novak, Rune B. Lyngsø, Adrienn Szabó, István Miklós, Jotun Hein
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-13-293

The tree alignment problem
Cited by: 28
Author(s): Andrés Varón, Ward C. Wheeler
Software Mentions: 1
Published: about 12 years ago