pypi: Comet | Projects | Ecosyste.ms: Papers

10.1186/s12864-020-07127-3

Temporal proteomic profiling reveals insight into critical developmental processes and temperature-influenced physiological response differences in a bivalve mollusc
Cited by: 6
Author(s): Shelly A. Trigg, Kaitlyn R. Mitchell, Rhonda Elliott Thompson, Benoït Eudeline, Brent Vadopalas, Emma Timmins‐Schiffman, Steven B. Roberts
Software Mentions: 1
Published: about 4 years ago

10.1515/tnsci-2020-0174

<i>Lepidium sativum</i> as candidate against excitotoxicity in retinal ganglion cells
Cited by: 3
Author(s): Abeer Al-Dbass, Musarat Amina, Nawal M. Al Musayeib, Amira A. El-Anssary, Ramesa Shafi Bhat, Rania Fahmy, Majd M. Alhamdan, Afaf El‐Ansary
Software Mentions: 1
Published: almost 4 years ago

10.1101/2021.04.15.440067

Rapalogs downmodulate intrinsic immunity and promote cell entry of SARS-CoV-2
Cited by: 7
Author(s): Guoli Shi, Abhilash I. Chiramel, Saliha Majdoul, Kin Kui Lai, Sudipto Das, Paul A. Beare, Þorkell Andrésson, Sonja M. Best, Alex A. Compton
Software Mentions: 1
Published: over 3 years ago

10.1128/mSphere.00001-19

Implementation of a CRISPR-Based System for Gene Regulation in <i>Candida albicans</i>
Cited by: 31
Author(s): Elvira Román, Ioana Coman, Daniel Prieto, Rebeca Alonso-Monge, Jesús Pla
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-2855-3

A comprehensive and scalable database search system for metaproteomics
Cited by: 44
Author(s): Sandip Chatterjee, Gregory S. Stupp, Sung Kyu Robin Park, Jean-Christophe Ducom, John R. Yates, Andrew I. Su, Dennis W. Wolan
Software Mentions: 1
Published: over 8 years ago

10.1128/mSystems.00462-20

Proteomic Study of the Survival and Resuscitation Mechanisms of Filamentous Persisters in an Evolved Escherichia coli Population from Cyclic Ampicillin Treatment
Cited by: 19
Author(s): Jordy Evan Sulaiman, Henry Lam
Software Mentions: 1
Published: about 4 years ago

10.1038/s41396-019-0503-z

Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes
Cited by: 21
Author(s): Molly P. Mikan, H. Rodger Harvey, Emma Timmins‐Schiffman, Michael Riffle, Damon May, Ian Salter, William Stafford Noble, Brook L. Nunn
Software Mentions: 1
Published: about 5 years ago

10.3390/jof6040328

Beyond Melanin: Proteomics Reveals Virulence-Related Proteins in Paracoccidioides brasiliensis and Paracoccidioides lutzii Yeast Cells Grown in the Presence of L-Dihydroxyphenylalanine
Cited by: 4
Author(s): Rodrigo Almeida‐Paes, Marcos de Abreu Almeida, Lílian Cristiane Baeza, Leticia Andrade Mendes Marmello, Monique Ramos de Oliveira Trugilho, Joshua D. Nosanchuk, Célia Maria de Almeida Soares, Richard H. Valente, Rosely Maria Zancopé‐Oliveira
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13045-015-0132-6

YM155 potently kills acute lymphoblastic leukemia cells through activation of the DNA damage pathway
Cited by: 31
Author(s): Bill H. Chang, Kara Johnson, Dorian LaTocha, Joelle Rowley, Jade Bryant, Russell T. Burke, Rebecca Smith, Marc Loriaux, Markus Müschen, Charles G. Mullighan, Brian J. Druker, Jeffrey W. Tyner
Software Mentions: 1
Published: over 9 years ago

10.22037/ijpr.2019.1100760

Therapeutic Effects of Nano-HAp in a Rat Model of AlCl3 Induced Neurotoxicity.
Cited by: 3
Author(s): Osama A. Abbas, Issa Ghada Ibrahim, Abdel-Gawad Eman Ismail
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13052-019-0676-0

Comparative two time-point proteome analysis of the plasma from preterm infants with and without bronchopulmonary dysplasia
Cited by: 10
Author(s): Magdalena Zasada, Maciej Suski, Renata Bokiniec, Monika Szwarc-Duma, Maria Katarzyna Borszewska−Kornacka, Józef Madej, Beata Bujak-Giżycka, Anna Madetko‐Talowska, Cecilie Revhaug, Lars Oliver Baumbusch, Ola Didrik Saugstad, Jacek J Pietrzyk, Przemko Kwinta
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph13080802

Effects of Long-Term Exposure to 60 GHz Millimeter-Wavelength Radiation on the Genotoxicity and Heat Shock Protein (Hsp) Expression of Cells Derived from Human Eye
Cited by: 20
Author(s): Satoshi Koyama, Eijiro Narita, Yoko Shimizu, Yukihisa Suzuki, Takeo Shiina, Masao Taki, Naoki Shinohara, Junji Miyakoshi
Software Mentions: 1
Published: over 8 years ago

10.3390/ijerph17124215

Effect of C242T Polymorphism in the Gene Encoding the NAD(P)H Oxidase p22phox Subunit and Aerobic Fitness Levels on Redox State Biomarkers and DNA Damage Responses to Exhaustive Exercise: A Randomized Trial
Cited by: 2
Author(s): Su-Youn Cho, Wi-Young So, Hee-Tae Roh
Software Mentions: 1
Published: over 4 years ago

10.1016/j.isci.2019.08.057

Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis
Cited by: 34
Author(s): Mohamed Taha Moutaoufik, Ramy H. Malty, Shahreen Amin, Qingzhou Zhang, Sadhna Phanse, Alla Gagarinova, Mara Zilocchi, Larissa Hoell, Zoran Minić, Maria Gagarinova, Hiroyuki Aoki, Jocelyn Stockwell, Matthew Jessulat, Florian Goebels, Kirsten Broderick, Nichollas E. Scott, James Vlasblom, Gabriel Musso, Bhanu Prasad, Eleonora Lamantea, Barbara Garavaglia, Alex Rajput, Kei Murayama, Yasushi Okazaki, Leonard J. Foster, Gary D. Bader, Francisco S. Cayabyab, Mohan Babu
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0167547

A General Method for Targeted Quantitative Cross-Linking Mass Spectrometry
Cited by: 42
Author(s): Juan D. Chavez, Jimmy K. Eng, Devin K. Schweppe, Michelle Cilia, Keith Rivera, Xuefei Zhong, Xia Wu, Terrence K. Allen, Moshe Khurgel, Akhilesh Kumar, Athanasios Lampropoulos, Mårten Larsson, Shuvadeep Maity, Yaroslav I. Morozov, Wimal Pathmasiri, Mathew Perez-Neut, Coriness Piñeyro-Ruiz, Elizabeth Polina, Stephanie Post, Mark H. Rider, Dorota Tokmina‐Roszyk, Katherine Tyson, Débora Vieira Parrine Sant’Ana, James E. Bruce
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0055651

Norspermidine and Novel Pd(II) and Pt(II) Polynuclear Complexes of Norspermidine as Potential Antineoplastic Agents Against Breast Cancer
Cited by: 30
Author(s): Tania Silva, Sandra Andersson, Sunil K. Sukumaran, M. P. M. Marques, Lo Persson, Stina Oredsson
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0183292

Effect of endurance exercise on microRNAs in myositis skeletal muscle—A randomized controlled study
Cited by: 26
Author(s): J Boehler, Marshall W. Hogarth, Matthew D. Barberio, James S. Novak, Svetlana Ghimbovschi, Kristy J. Brown, Li Alemo Munters, Ingela Loell, Yiwen Chen, Heather Gordish‐Dressman, Helene Alexanderson, Ingrid E. Lundberg, Kanneboyina Nagaraju
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0225503

Cost-effectiveness analysis of parenting interventions for the prevention of behaviour problems in children
Cited by: 14
Author(s): Camilla Nystrand, Inna Feldman, Pia Enebrink, Filipa Sampaio
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0230400

Calcium-binding proteins are altered in the cerebellum in schizophrenia
Cited by: 15
Author(s): Francisco Vidal-Domènech, Gemma Riquelme, Raquel Pinacho, Ricard A. Rodríguez-Mias, América Vera-Montecinos, Alfonso Monje, Isidre Ferrer, Luis F. Callado, J. Javier Meana, Judit Villén, Belén Ramos
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0223794

Proteomic analysis of Escherichia coli detergent-resistant membranes (DRM)
Cited by: 10
Author(s): José E. Guzmán-Flores, Lidia Steinemann-Hernández, Luis E. González de la Vara, Marina Gavilanes‐Ruíz, Tony Romeo, Adrián F. Álvarez, Dimitris Georgellis
Software Mentions: 1
Published: about 5 years ago

10.1194/jlr.M090555

Genetic control of the mouse HDL proteome defines HDL traits, function, and heterogeneity
Cited by: 17
Author(s): Nathalie Pamir, Calvin Pan, Deanna Plubell, Patrick M. Hutchins, Chongren Tang, Jake Wimberger, Angela Irwin, Thomas Q. de Aguiar Vallim, Jay W. Heinecke, Aldons J. Lusis
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers11030386

Radiosensitivity of Cancer Cells Is Regulated by Translationally Controlled Tumor Protein
Cited by: 13
Author(s): Ji‐Won Jung, Ji Sun Lee, Yun Sil Lee, Kyunglim Lee
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12051250

A Novel Role for NUAK1 in Promoting Ovarian Cancer Metastasis through Regulation of Fibronectin Production in Spheroids
Cited by: 16
Author(s): Jamie Lee Fritz, Olga Collins, Parima Saxena, Adrian Buensuceso, Yudith Ramos Valdés, Kyle Francis, Kevin R. Brown, Brett Larsen, Karen Colwill, Anne‐Claude Gingras, Robert Rottapel, Trevor G. Shepherd
Software Mentions: 1
Published: over 4 years ago

10.1080/15384101.2015.1128597

PrimPol-deficient cells exhibit a pronounced G2 checkpoint response following UV damage
Cited by: 21
Author(s): Laura J. Bailey, Julie Bianchi, Nadia Hégarat, Helfrid Hochegger, Aidan J. Doherty
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-016-3362-2

2016 update on APBioNet’s annual international conference on bioinformatics (InCoB)
Cited by: 1
Author(s): Christian Schönbach, Chandra Verma, Lionel Wee, Peter J. Bond, Shoba Ranganathan
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0127177

The Protecting Effect of Deoxyschisandrin and Schisandrin B on HaCaT Cells against UVB-Induced Damage
Cited by: 34
Author(s): Wei Hou, Wei Gao, Datao Wang, Qingxiu Liu, Siwen Zheng, Wang Ying-ping
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0202860

ABT-888 restores sensitivity in temozolomide resistant glioma cells and xenografts
Cited by: 25
Author(s): Alice Yuan, Christian B. Ricks, Alexandra Böhm, Xueqing Lun, Lori Maxwell, Shahana Safdar, Shazreh Bukhari, Amanda Gerber, Wajid Sayeed, Elizabeth A. Bering, Haley Pedersen, Jennifer A. Chan, Yaoqing Shen, Marco A. Marra, David R. Kaplan, Warren P. Mason, Lindsey D. Goodman, Ravesanker Ezhilarasan, Ascher B. Kaufmann, M Currie Cabral, Stephen M. Robbins, Donna L. Senger, Daniel P. Cahill, Erik P. Sulman, J. Gregory Cairncross, Michael Blough
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0162822

Is Low Non-Lethal Concentration of Methylmercury Really Safe? A Report on Genotoxicity with Delayed Cell Proliferation
Cited by: 36
Author(s): María Elena Crespo-López, Allan Costa-Malaquias, Edivaldo Herculano Corrêa de Oliveira, M. S. Miranda, Gabriela de Paula Arrifano, José Rogério Souza-Monteiro, Fernanda do Espírito Santo Sagica, Enéas Andrade Fontes-Júnior, Cristiane do Socorro Ferraz Maia, Barbarella de Matos Macchi, José Luíz Martins do Nascimento
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0174992

Using drug exposure for predicting drug resistance – A data-driven genotypic interpretation tool
Cited by: 8
Author(s): Alejandro Pironti, Nico Pfeifer, Henrik Walter, Björn Jensen, Maurizio Zazzi, Perpétua Gómes, Rolf Kaiser, Thomas Lengauer
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0196670

HIV-1 transmitted drug resistance in Slovenia and its impact on predicted treatment effectiveness: 2011–2016 update
Cited by: 9
Author(s): Maja M. Lunar, Snježana Židovec Lepej, Janez Tomažič, Tomaž Vovko, Blaž Pečavar, Gabriele Turel, Manja Maver, Mario Poljak
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-019-5547-y

Differential proteomic comparison of breast cancer secretome using a quantitative paired analysis workflow
Cited by: 9
Author(s): Giselle Villa Flor Brunoro, Paulo C. Carvalho, Valmir C. Barbosa, Dante Pagnoncelli, C. Gallo, Jonás Perales, René P. Zahedi, Richard H. Valente, Ana Gisele C. Neves-Ferreira
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.13841

A SPOPL/Cullin-3 ubiquitin ligase complex regulates endocytic trafficking by targeting EPS15 at endosomes
Cited by: 49
Author(s): Michaela Gschweitl, Anna Ulbricht, Christopher A. Barnes, Radoslav I. Enchev, Ingrid Stoffel-Studer, Nathalie Meyer-Schaller, Jatta Huotari, Yohei Yamauchi, Urs F. Greber, Ari Helenius, Matthias Peter
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1006856

TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis
Cited by: 76
Author(s): Atsuhito Kubota, Shogo Ito, Jae Sung Shim, Richard S. Johnson, Song Yan-qi, Ghislaı̀n Breton, Greg S. Goralogia, Michael S. Kwon, Dianne Laboy Cintrón, Tomotsugu Koyama, Masaru Ohme‐Takagi, José L. Pruneda-Paz, Steve A. Kay, Michael J. MacCoss, Takato Imaizumi
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2014.11.003

Raw data for the identification of SUMOylated proteins in S. cerevisiae subjected to two types of osmotic shock, using affinity purification coupled with mass spectrometry
Cited by: 0
Author(s): Tharan Srikumar, Megan Lewicki, Brian Raught
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2017.04.058

Data from proteome analysis of Lasiodiplodia theobromae (Botryosphaeriaceae)
Cited by: 1
Author(s): Carla Uranga, Majid Ghassemian, Rufina Hernández-Martínez
Software Mentions: 1
Published: over 7 years ago

10.1186/1741-7007-12-39

VAPB/ALS8 interacts with FFAT-like proteins including the p97 cofactor FAF1 and the ASNA1 ATPase
Cited by: 31
Author(s): Yorann Baron, Patrick G. A. Pedrioli, Kshitiz Tyagi, Clare Johnson, Nicola T. Wood, Daniel Fountaine, Melanie Wightman, Gabriela Alexandru
Software Mentions: 1
Published: over 10 years ago

10.1186/s13015-017-0104-1

A better scoring model for de novo peptide sequencing: the symmetric difference between explained and measured masses
Cited by: 3
Author(s): Thomas Tschager, Simon Rösch, Ludovic Gillet, Peter Widmayer
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2016.11.083

Dataset of proteins mapped on HepG2 cells and those differentially abundant after expression of the dengue non-structural 1 protein
Cited by: 3
Author(s): Kíssila Rabelo, Monique Ramos de Oliveira Trugilho, Simoni Furtado da Costa, André T.S. Ferreira, Paulo C. Carvalho, Jonás Perales, Ada M. B. Alves
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1007901

Functional divergence of a global regulatory complex governing fungal filamentation
Cited by: 15
Author(s): Elizabeth J. Polvi, Amanda O. Veri, Zhongle Liu, Saif Hossain, Sabrina Hyde, Sang Hu Kim, Faïza Tebbji, Adnane Sellam, Robert T. Todd, Jinglin Lucy Xie, Zhen Yuan Lin, Cassandra Wong, Rebecca Shapiro, Malcolm Whiteway, Nicole Robbins, Anne Claude Gingras, Anna Selmecki, Leah E. Cowen
Software Mentions: 1
Published: almost 6 years ago

10.3390/nu13041263

Perilla frutescens Extracts Enhance DNA Repair Response in UVB Damaged HaCaT Cells
Cited by: 6
Author(s): Hyuna Lee, Eunmi Park
Software Mentions: 1
Published: over 3 years ago

10.1186/s13015-018-0132-5

Improved de novo peptide sequencing using LC retention time information
Cited by: 1
Author(s): Yves Frank, Tomás Hrúz, Thomas Tschager, Valentin Venzin
Software Mentions: 1
Published: about 6 years ago

10.1007/s00394-019-01995-6

Mechanism of selective anticancer activity of isothiocyanates relies on differences in DNA damage repair between cancer and healthy cells
Cited by: 23
Author(s): Aleksandra Hać, Joanna Brokowska, Estera Rintz, Michał Bartkowski, Grzegorz Węgrzyn, Anna Herman-Antosiewicz
Software Mentions: 1
Published: over 5 years ago

10.3390/plants10061260

Genomic Damage Induced in Nicotiana tabacum L. Plants by Colloidal Solution with Silver and Gold Nanoparticles
Cited by: 12
Author(s): Petra Lovecká, Anna Macůrková, Кamil Záruba, Tomáš Hubáček, Jakub Siegel, Olga Valentová
Software Mentions: 1
Published: over 3 years ago

10.3390/pathogens10020129

Nitroreductase Activites in Giardia lamblia: ORF 17150 Encodes a Quinone Reductase with Nitroreductase Activity
Cited by: 5
Author(s): Joachim Müller, Manfred Heller, Anne-Christine Uldry, Sophie Braga, Norbert Müller
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.675973

Complete Chromatin Decondensation of Pig Sperm Is Required to Analyze Sperm DNA Breaks With the Comet Assay
Cited by: 6
Author(s): Jordi Ribas-Maynou, Ariadna Delgado-Bermúdez, Estela Garcia-Bonavila, E. Pinart, Marc Yeste, Sergi Bonet
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2021.662945

Staging Encystation Progression in Giardia lamblia Using Encystation-Specific Vesicle Morphology and Associating Molecular Markers
Cited by: 5
Author(s): Elizabeth Thomas, Renaldo Sutanto, Richard S. Johnson, Han-Wei Shih, Germain C. M. Alas, Jana Krtková, Michael J. MacCoss, Alexander R. Paredez
Software Mentions: 1
Published: over 3 years ago

10.3390/v12010063

HIV-1 Unique Recombinant Forms Identified in Slovenia and Their Characterization by Near Full-Length Genome Sequencing
Cited by: 5
Author(s): Maja M. Lunar, Jana Mlakar, Tomaž Mark Zorec, Mario Poljak
Software Mentions: 1
Published: almost 5 years ago

Projects: pypi: Comet

Papers Mentioning Comet 248