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Projects: pypi: CloudForest

https://packages.ecosyste.ms/registries/pypi.org/packages/CloudForest

Generate gene and species trees from thousands of loci using Map-Reduce
1 version
Latest release: almost 3 years ago

Enhanced Analysis
Educational Contributors: nick@wireless1x-13-185.bu.edu mullenlab@cumm005-0b01-dhcp-152.bu.edu
Repository Activity:
Repository Owner: Nick Crawford (user)
Computational Biologist. Recent work is currently in private repos.
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +40 Educational commit emails
    2 contributors with educational email addresses
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning CloudForest 3

10.1371/journal.pone.0144820
CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data
Cited by: 2
Author(s): Ryan Bressler, Richard Kreisberg, Brady Bernard, John E. Niederhuber, Joseph G. Vockley, Ilya Shmulevich, Theo Knijnenburg
Software Mentions: 5
Published: over 10 years ago
10.1371/journal.pone.0054848
A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing
Cited by: 290
Author(s): John E. McCormack, Michael Harvey, Brant C. Faircloth, Nicholas G. Crawford, Travis C. Glenn, Robb T. Brumfield
Software Mentions: 2
Published: over 13 years ago
10.1371/journal.pone.0065923
A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)
Cited by: 248
Author(s): Brant C. Faircloth, Laurie Sorenson, Francesco Santini, Michael E. Alfaro
Software Mentions: 2
Published: about 13 years ago