10.3389/fgene.2020.00044

The Cytochrome P450 Monooxygenase Inventory of Grapevine (Vitis vinifera L.): Genome-Wide Identification, Evolutionary Characterization and Expression Analysis
Cited by: 28
Author(s): Songtao Jiu, Yan Xu, Jiyuan Wang, Lei Wang, Xunju Liu, Wanxia Sun, Irfan Ali Sabir, Chao Ma, Wenping Xu, Shiping Wang, Muhammad Abdullah, Caixi Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2018.03163

VH1-69 Utilizing Antibodies Are Capable of Mediating Non-neutralizing Fc-Mediated Effector Functions Against the Transmitted/Founder gp120
Cited by: 11
Author(s): S Abigail Smith, Samantha L. Burton, William Kilembe, Shabir Lakhi, Etienne Karita, Matt A. Price, Susan Allen, Cynthia A. Derdeyn
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2021.587440

Transcriptome and Differential Methylation Integration Analysis Identified Important Differential Methylation Annotation Genes and Functional Epigenetic Modules Related to Vitiligo
Cited by: 11
Author(s): Yihuan Pu, Xuenuo Chen, Yangmei Chen, Lingzhao Zhang, Jiayi Chen, Yujie Zhang, Xinyi Shao
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2016.00301

Phylogenetic and Functional Substrate Specificity for Endolithic Microbial Communities in Hyper-Arid Environments
Cited by: 45
Author(s): Alexander Crits-Christoph, Courtney K. Robinson, Bing Ma, Jacques Ravel, Jacek Wierzchos, Carmen Ascaso, Octavio Artieda, Virginia Souza-Egipsy, María Cristina Casero, Jocelyne DiRuggiero
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2016.00573

Genomic and Secondary Metabolite Analyses of Streptomyces sp. 2AW Provide Insight into the Evolution of the Cycloheximide Pathway
Cited by: 16
Author(s): Elizabeth R. Stulberg, Gabriel L. Lozano, Jesse B. Morin, Hyunjun Park, Ezra Baraban, Christine Mlot, Christopher Heffelfinger, Gillian M. Phillips, Jason S. Rush, Andrew J. Phillips, Nichole A. Broderick, Michael G. Thomas, Eric V. Stabb, Jo Handelsman
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2021.662966

Effects of Gallic Acid on Fermentation Parameters, Protein Fraction, and Bacterial Community of Whole Plant Soybean Silage
Cited by: 19
Author(s): Cheng Wang, Mingyang Zheng, Shuo Wu, Xuan Zhou, Xiaoyang Chen, Liangfa Ge, Qing Zhang
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.01291

Disentangling the Drivers of Diversity and Distribution of Fungal Community Composition in Wastewater Treatment Plants Across Spatial Scales
Cited by: 33
Author(s): Haihan Zhang, Ji Feng, Shengnan Chen, Baoqin Li, Raju Sekar, Zhenfang Zhao, Jingyu Jia, Yue Wang, Peng-Liang Kang
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.00079

Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle
Cited by: 32
Author(s): Trestan Pillonel, Claire Bertelli, Gilbert Greub
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.00504

Adaptations of Alteromonas sp. 76-1 to Polysaccharide Degradation: A CAZyme Plasmid for Ulvan Degradation and Two Alginolytic Systems
Cited by: 25
Author(s): Hanna Koch, Heike M. Freese, Richard L. Hahnke, Meinhard Simon, Matthias Wietz
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.568457

The Effect of Xylooligosaccharide, Xylan, and Whole Wheat Bran on the Human Gut Bacteria
Cited by: 8
Author(s): Miao Chen, Shujun Liu, Khandaker Md Sharif Uddin Imam, Lichao Sun, Yulu Wang, Tianyi Gu, Bin Wen, Fengjiao Xin
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2019.02792

Whole Genome Re-sequencing Reveals Natural Variation and Adaptive Evolution of Phytophthora sojae
Cited by: 31
Author(s): Xiong Zhang, Bo Liu, Fen Zou, Danyu Shen, Zhiyuan Yin, Rongbo Wang, Feng He, Yuanchao Wang, Brett M. Tyler, Wei Fan, Wanqiang Qian, Daolong Dou
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2016.00248

Why Close a Bacterial Genome? The Plasmid of Alteromonas Macleodii HOT1A3 is a Vector for Inter-Specific Transfer of a Flexible Genomic Island
Cited by: 23
Author(s): Eduard Fadeev, Fabio De Pascale, Alessandro Vezzi, Sariel Hübner, Dikla Aharonovich, Daniel Sher
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2020.00445

Microbiota Succession and Chemical Composition Involved in the Radish Fermentation Process in Different Containers
Cited by: 14
Author(s): Lei Liu, Xiao She, Xing Chen, Qian Yang, Yufei Tao, Yalin Li, Shuyu Guo, Wenliang Xiang, Guorong Liu, Yu Rao
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.01520

Complete Genome Sequence of Industrial Biocontrol Strain Paenibacillus polymyxa HY96-2 and Further Analysis of Its Biocontrol Mechanism
Cited by: 30
Author(s): Yuanchan Luo, Yuejuan Cheng, Jincui Yi, Zhijun Zhang, Qian Luo, Daojing Zhang, Yuanguang Li
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2019.02506

Changes in the Carbon Metabolism of Escherichia coli During the Evolution of Doxycycline Resistance
Cited by: 15
Author(s): Yiwen Yang, Jiandui Mi, Jiadi Liang, Xindi Liao, Baohua Ma, Yongde Zou, Yan Wang, Jiankun Liang, Yinbao Wu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2019.01786

Genomic Analyses Reveal Evidence of Independent Evolution, Demographic History, and Extreme Environment Adaptation of Tibetan Plateau Agaricus bisporus
Cited by: 12
Author(s): Lei Sun, Yuhua Fu, Yang Yang, Xinxin Wang, Weijie Cui, Dan Li, Xiaohui Yuan, Zhiwu Zhang, Yongping Fu, Li Yu
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2019.01579

The Seasonal Dynamics and the Influence of Human Activities on Campus Outdoor Microbial Communities
Cited by: 5
Author(s): Chaoyun Chen, Ruiqiao He, Zhangyu Cheng, Maozhen Han, Yuguo Zha, Pengshuo Yang, Qi Yao, Hao Zhou, Chunrong Zhong, Kang Ning
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2019.00058

Exploring K2G30 Genome: A High Bacterial Cellulose Producing Strain in Glucose and Mannitol Based Media
Cited by: 43
Author(s): Maria Gullo, Salvatore La China, Giulio Petroni, Simona Di Gregorio, Paolo Giudici
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.00540

Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass
Cited by: 34
Author(s): Aoife Joyce, Umer Zeeshan Ijaz, Corine Nzeteu, Aoife Vaughan, Sally L. Shirran, Catherine H. Botting, Christopher Quince, Vincent O’Flaherty, Florence Abram
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.630841

Preventive Effects of Bacillus licheniformis on Heat Stroke in Rats by Sustaining Intestinal Barrier Function and Modulating Gut Microbiota
Cited by: 13
Author(s): Lei Li, Man Wang, Ji-Kuai Chen, Zhuoran Xu, Shaokang Wang, Xinyu Xia, Dong Liu, Sheng Wang, Chaoyu Xie, Jianghong Wu, Jinfeng Li, Jiqianzhu Zhang, Meitang Wang, Jian Zhu, Changquan Ling, Shuogui Xu
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2019.01248

A Newly Isolated Bacillus subtilis Strain Named WS-1 Inhibited Diarrhea and Death Caused by Pathogenic Escherichia coli in Newborn Piglets
Cited by: 11
Author(s): Yunping Du, Zhichao Xu, Guolian Yu, Wei Liu, Qingfeng Zhou, Dehong Yang, Jie Li, Li Chen, Yun Zhang, Chunyi Xue, Yongchang Cao
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.00126

Genome-Wide Identification and Classification of Soybean C2H2 Zinc Finger Proteins and Their Expression Analysis in Legume-Rhizobium Symbiosis
Cited by: 35
Author(s): Songli Yuan, Xiangyong Li, Rong Li, Lei Wang, Chanjuan Zhang, Limiao Chen, Qingnan Hao, Xiaojuan Zhang, Haifeng Chen, Shan Zhang, Zengling Yang, Shuilian Chen, Dandan Qiu, Danxia Ke, Xinan Zhou
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2019.00026

NBS-Encoding Genes in Brassica napus Evolved Rapidly After Allopolyploidization and Co-localize With Known Disease Resistance Loci
Cited by: 28
Author(s): Ying Fu, Yaofeng Zhang, Annaliese S. Mason, Baogang Lin, Dongqing Zhang, Han‐Qing Yu, Donghui Fu
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2015.00965

Integrative analysis and expression profiling of secondary cell wall genes in C4 biofuel model Setaria italica reveals targets for lignocellulose bioengineering
Cited by: 26
Author(s): Mehanathan Muthamilarasan, Yusuf Khan, Jananee Jaishankar, Shweta Shweta, Charu Lata
Software Mentions: 2
Published: almost 11 years ago

10.3389/fpls.2015.01142

Foxtail Millet NF-Y Families: Genome-Wide Survey and Evolution Analyses Identified Two Functional Genes Important in Abiotic Stresses
Cited by: 64
Author(s): Feng Zheng, Guanhua He, Wenbin Zheng, Panpan Lu, Ming Chen, Yaming Gong, Yupo Ma, Zhao‐Shi Xu
Software Mentions: 2
Published: almost 11 years ago

10.3389/fpls.2019.00218

Sequencing the Plastid Genome of Giant Ragweed (Ambrosia trifida, Asteraceae) From a Herbarium Specimen
Cited by: 17
Author(s): Gaurav Sablok, Ali Amiryousefi, Xiaolan He, Jaakko Hyvönen, Péter Poczai
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2016.01874

Structural, Evolutionary, and Functional Analysis of the Class III Peroxidase Gene Family in Chinese Pear (Pyrus bretschneideri)
Cited by: 57
Author(s): Yunpeng Cao, Yuepeng Han, Dong Meng, Dahui Li, Qing Jin, Yi Lin, Yongping Cai
Software Mentions: 2
Published: almost 10 years ago

10.3389/fpls.2018.00976

FNBtools: A Software to Identify Homozygous Lesions in Deletion Mutant Populations
Cited by: 8
Author(s): Liang Sun, Yinbing Ge, Andrew Charles Bancroft, Xiaofei Cheng, Jiangqi Wen
Software Mentions: 2
Published: about 8 years ago

10.3389/fpubh.2021.633792

Evolutionary Analysis of Pre-S/S Mutations in HBeAg-Negative Chronic Hepatitis B With HBsAg < 100 IU/ml
Cited by: 3
Author(s): Yongdong Wu, Zhiqiang Zhu, Jiang Wu, Wenzi Bi, Wei Xu, Xiaoping Xia, Dongsheng Han
Software Mentions: 2
Published: over 5 years ago

10.3389/fvets.2021.625609

Deep Insight Into Long Non-coding RNA and mRNA Transcriptome Profiling in HepG2 Cells Expressing Genotype IV Swine Hepatitis E Virus ORF3
Cited by: 1
Author(s): Jiao Hu, Xuehong Shuai, Yichen Luo, Zhixiong Zhou, Yu Zhao, Bowen Li, Guojing Gu, Wenjie Li, Mengjuan Li, Hui Zeng, Xi Guo, Yinlong Xiao, Zhenhui Song, Ling Gan, Qingzhou Huang
Software Mentions: 2
Published: over 5 years ago

10.1007/s10142-017-0555-y

Transcriptome profile of the human placenta
Cited by: 27
Author(s): Marta Majewska, Aleksandra Lipka, Łukasz Paukszto, J Jastrzebski, Kamil Myszczyński, Marek Gowkielewicz, Marcin Jóźwik, Mariusz Majewski
Software Mentions: 2
Published: over 9 years ago

10.1534/g3.113.007229

Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing
Cited by: 67
Author(s): Justin T. Page, Mark D. Huynh, Zach S. Liechty, Kara Grupp, David M. Stelly, Amanda M. Hulse, Hamid Ashrafi, Allen Van Deynze, Jonathan F. Wendel, Joshua A. Udall
Software Mentions: 2
Published: about 13 years ago

10.1534/g3.113.010090

Genome Sequence of <i>Saccharomyces carlsbergensis</i>, the World’s First Pure Culture Lager Yeast
Cited by: 120
Author(s): Andrea Walther, Ana Hesselbart, Jürgen Wendland
Software Mentions: 2
Published: over 12 years ago

10.1534/g3.114.015933

Insights into Ongoing Evolution of the Hexachlorocyclohexane Catabolic Pathway from Comparative Genomics of Ten Sphingomonadaceae Strains
Cited by: 20
Author(s): Stephen L. Pearce, John G. Oakeshott, Gyanendra Pandey
Software Mentions: 2
Published: over 11 years ago

10.1534/g3.115.017921

Endogenous Small RNA Mediates Meiotic Silencing of a Novel DNA Transposon
Cited by: 33
Author(s): Yizhou Wang, Kristina M. Smith, John W. Taylor, Michael Freitag, Jason E. Stajich
Software Mentions: 2
Published: about 11 years ago

10.1534/g3.118.200481

Genomics-Assisted Identification and Characterization of the Genetic Variants Underlying Differential Nitrogen Use Efficiencies in Allotetraploid Rapeseed Genotypes
Cited by: 12
Author(s): Yingpeng Hua, Ting Zhou, Qiong Liao, Haixing Song, Chunyun Guan, Zhenhua Zhang
Software Mentions: 2
Published: about 8 years ago

10.1534/g3.119.400262

Developing a High-Quality Linkage Map for the Atlantic Killifish<i>Fundulus heteroclitus</i>
Cited by: 10
Author(s): Jeffrey T. Miller, Noah M. Reid, Diane Nacci, Andrew Whitehead
Software Mentions: 2
Published: about 7 years ago

10.1534/g3.120.401460

Characterization and Fine Mapping of a Yellow-Virescent Gene Regulating Chlorophyll Biosynthesis and Early Stage Chloroplast Development in <i>Brassica napus</i>
Cited by: 16
Author(s): Chuanji Zhao, Lijiang Liu, Luqman Bin Safdar, Meili Xie, Xiaohui Cheng, Yueying Liu, Yu‐Tao Xiang, Chaobo Tong, Jinxing Tu, Junyan Huang, Liu S
Software Mentions: 2
Published: about 6 years ago

10.1534/g3.120.401361

Completed Genomic Sequence of<i>Bacillus thuringiensis</i>HER1410 Reveals a<i>Cry</i>-Containing Chromosome, Two Megaplasmids, and an Integrative Plasmidial Prophage
Cited by: 15
Author(s): Ana Lechuga, Cédric Lood, Margarita Salas, Vera van Noort, Rob Lavigne, Modesto Redrejo-Rodríguez
Software Mentions: 2
Published: about 6 years ago

10.1093/g3journal/jkaa007

Genomic analyses of two Italian oyster mushroom <i>Pleurotus pulmonarius</i> strains
Cited by: 6
Author(s): Guillermo Vidal-Diez de Ulzurrun, Yi-Yun Lee, Jason E. Stajich, Erich M. Schwarz, Yu-Ting Hsueh
Software Mentions: 2
Published: almost 6 years ago

10.1093/g3journal/jkab209

Transcriptomic and photosynthetic responses to grafting of the <i>Nod1</i> gene in nodulated and non-nodulated soybeans
Cited by: 2
Author(s): Qingyuan He, Shihua Xiang, Wubin Wang, Yingjie Shu, Zhengpeng Li, Songhua Wang, Lei Chen, Xiao-Yan Yang, Tuanjie Zhao
Software Mentions: 2
Published: over 5 years ago

10.3390/genes9020035

Genome-Wide Characterization of Heat-Shock Protein 70s from Chenopodium quinoa and Expression Analyses of Cqhsp70s in Response to Drought Stress
Cited by: 31
Author(s): Jianxia Liu, Runmei Wang, Wenying Liu, Hongli Zhang, Yi Guo, Rong Wen
Software Mentions: 2
Published: over 8 years ago

10.3390/genes9020070

Genome-Wide Identification and Expression Analysis of the HD-Zip Gene Family in Wheat (Triticum aestivum L.)
Cited by: 38
Author(s): Hong Yue, Duntao Shu, Meng Wang, Guangwei Xing, Haoshuang Zhan, Xianghong Du, Weining Song, Xiaojun Nie
Software Mentions: 2
Published: over 8 years ago

10.3390/genes9040185

Assembly of the Boechera retrofracta Genome and Evolutionary Analysis of Apomixis-Associated Genes
Cited by: 17
Author(s): Sergei Kliver, Mikhail Rayko, Alexey Komissarov, Evgeny Bakin, Daria V. Zhernakova, Kasavajhala V. S. K. Prasad, Catherine A. Rushworth, Ramamurthy Baskar, Dmitry Smetanin, Jeremy Schmutz, Daniel S. Rokhsar, Thomas Mitchell‐Olds, Ueli Grossniklaus, Vladimir Brukhin
Software Mentions: 2
Published: over 8 years ago

10.3390/genes9110547

Assembly of a Complete Mitogenome of Chrysanthemum nankingense Using Oxford Nanopore Long Reads and the Diversity and Evolution of Asteraceae Mitogenomes
Cited by: 32
Author(s): Shuaibin Wang, Qingwei Song, Shanshan Li, Zhigang Hu, Dong Gao, Chi Song, Hongwen Huang, Yifei Liu
Software Mentions: 2
Published: almost 8 years ago

10.3390/genes10010071

Genome-Wide Identification and Expression Profiling of Sugar Transporter Protein (STP) Family Genes in Cabbage (Brassica oleracea var. capitata L.) Reveals their Involvement in Clubroot Disease Responses
Cited by: 29
Author(s): Wei Zhang, Shenyun Wang, Fangwei Yu, Jun Tang, Li Yu, Hong Wang, Jianbin Li
Software Mentions: 2
Published: over 7 years ago

10.3390/genes10020081

Complete Genome Sequence Analysis and Characterization of Selected Iron Regulation Genes of Pasteurella Multocida Serotype A Strain PMTB2.1
Cited by: 7
Author(s): Shagufta Jabeen, Huan Yong Yap, Faez Firdaus Jesse Abdullah, Zunita Zakaria, Nurulfiza Mat Isa, Yung-Chie Tan, Yap S Joo, Dilan Amila Satharasinghe, Abdul Rahman Omar
Software Mentions: 2
Published: over 7 years ago

10.3390/genes10020131

Evolution and Identification of the WRKY Gene Family in Quinoa (Chenopodium quinoa)
Cited by: 20
Author(s): Hong Yue, Xi Chang, Yongqiang Zhi, Lan Wang, Guangwei Xing, Weining Song, Xiaojun Nie
Software Mentions: 2
Published: over 7 years ago

10.3390/genes10020119

Co-Expression Network Analysis and Hub Gene Selection for High-Quality Fiber in Upland Cotton (Gossypium hirsutum) Using RNA Sequencing Analysis
Cited by: 27
Author(s): Xianyan Zou, Àiyīng Liú, Zhen Zhang, Qún Gě, Senmiao Fan, Wànkuí Gǒng, Jùnwén Lǐ, Jǔwǔ Gōng, Yùzhēn Shí, Bin Tian, Yanling Wang, Ruixian Liu, Kang Lei, Qi Zhang, Xiao Jiang, Yulong Feng, Shuya Zhang, Tingting Jia, Lipeng Zhang, Yǒulù Yuán, Hǎihóng Shāng
Software Mentions: 2
Published: over 7 years ago

10.3390/genes10070537

Genome-Wide Identification and Characterization of Xyloglucan Endotransglycosylase/Hydrolase in Ananas comosus during Development
Cited by: 15
Author(s): Qingyun Li, Huayang Li, Chongyang Yin, Xiaotong Wang, Qing Jiang, Rui Zhang, Fangfang Ge, Yudong Chen, Long Yang
Software Mentions: 2
Published: about 7 years ago

10.3390/genes10100730

Genome-Wide Analysis of Cotton Auxin Early Response Gene Families and Their Roles in Somatic Embryogenesis
Cited by: 14
Author(s): Ruibin Sun, Shaohui Wang, Dan Ma, Yilin Li, Chuanliang Liu
Software Mentions: 2
Published: about 7 years ago

10.3390/genes11040353

Genome-Wide Identification, Classification, and Expression Profiling Reveals R2R3-MYB Transcription Factors Related to Monoterpenoid Biosynthesis in Osmanthus fragrans
Cited by: 18
Author(s): Haiyan Li, Yuanzheng Yue, Wenjie Ding, Gongwei Chen, Ling Li, Yuli Li, Tingting Shi, Xia Yang
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11050510

Genome-Wide Identification, Evolutionary Patterns, and Expression Analysis of bZIP Gene Family in Olive (Olea europaea L.)
Cited by: 17
Author(s): S.-H. Rong, Zhiyang Wu, Zizhang Cheng, Shan Zhang, Huan Liu, Qianming Huang
Software Mentions: 2
Published: over 6 years ago

10.3390/genes11091026

Fine-Mapping of Sorghum Stay-Green QTL on Chromosome10 Revealed Genes Associated with Delayed Senescence
Cited by: 17
Author(s): K N S Usha Kiranmayee, C. Tom Hash, Sivasubramani Selvanayagam, Punna Ramu, BhanuPrakash Amindala, Abhishek Rathore, P. B. Kavi Kishor, Rajeev Gupta, Santosh Deshpande
Software Mentions: 2
Published: about 6 years ago

10.3390/genes11101134

Genome-Wide Analysis of OPR Family Genes in Cotton Identified a Role for GhOPR9 in Verticillium dahliae Resistance
Cited by: 16
Author(s): Shichao Liu, Ruibin Sun, Xiaojian Zhang, Zili Feng, Feng Wei, Lihong Zhao, Yalin Zhang, Longfu Zhu, Hongjie Feng, Heqin Zhu
Software Mentions: 2
Published: about 6 years ago

10.3390/genes12030401

A Survey of Transposon Landscapes in the Putative Ancient Asexual Ostracod Darwinula stevensoni
Cited by: 4
Author(s): Isa Schön, Fernando Rodríguez, Matthew Dunn, Koenraad Martens, Michael Shribak, Irina R. Arkhipova
Software Mentions: 2
Published: over 5 years ago

10.3390/genes12040535

Metagenomics Assessment of Soil Fertilization on the Chemotaxis and Disease Suppressive Genes Abundance in the Maize Rhizosphere
Cited by: 6
Author(s): Matthew Chekwube Enebe, Olubukola Oluranti Babalola
Software Mentions: 2
Published: over 5 years ago

10.3390/genes12040608

Molecular Phylogeny and Evolution of Amazon Parrots in the Greater Antilles
Cited by: 2
Author(s): Sofia M. Kolchanova, Aleksey Komissarov, Sergei Kliver, Anyi Mazo‐Vargas, Yashira Afanador, Jafet Vélez-Valentín, Ricardo Valentín de la Rosa, Stephanie O Castro-Marquez, Israel Rivera-Colon, Audrey J. Majeske, Walter Wolfsberger, Taylor Hains, André Corvelo, Juan-Carlos Martinez-Cruzado, Travis C. Glenn, Orlando Robinson, Klaus Peter Koepfli, Tarás K. Oleksyk
Software Mentions: 2
Published: over 5 years ago

10.3390/genes12071022

The Influence of Soil Fertilization on the Distribution and Diversity of Phosphorus Cycling Genes and Microbes Community of Maize Rhizosphere Using Shotgun Metagenomics
Cited by: 12
Author(s): Matthew Chekwube Enebe, Olubukola Oluranti Babalola
Software Mentions: 2
Published: over 5 years ago

10.1590/1678-4685-GMB-2018-0235

Genome-wide identification and characterization of R2R3-MYB genes in Medicago truncatula
Cited by: 15
Author(s): Wei Li, Ying Liu, Jianfeng Zhao, Xin Zhen, Changhong Guo, Yongjun Shu
Software Mentions: 2
Published: about 7 years ago

10.1590/1678-4685-GMB-2020-0155

Genomic sequencing of two isolates of Ralstonia solanacearum causing Sergipe facies and comparative analysis with Bugtok disease isolates
Cited by: 3
Author(s): Jéssica Rodrigues da Silva, Ana Karolina Leite Pais, Greecy Mirian Rodrigues Albuquerque, Adriano Márcio Freire Silva, Wilson José Silva, Valdir de Queiroz Balbino, M. E. N. Fonseca, Marco Aurélio Siqueira da Gama, Elineide Barbosa de Souza, Rosa de Lima Ramos Mariano
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12711-021-00657-8

Long-range linkage disequilibrium in French beef cattle breeds
Cited by: 7
Author(s): Abdelmajid El Hou, Dominique Rocha, Eric Venot, Véronique Blanquet, Romain Philippe
Software Mentions: 2
Published: about 5 years ago

10.1534/genetics.117.300546

Detection of Epistasis for Flowering Time Using Bayesian Multilocus Estimation in a Barley MAGIC Population
Cited by: 36
Author(s): Boby Mathew, Jens Léon, Wiebke Sannemann, Mikko J. Sillanpää
Software Mentions: 2
Published: over 8 years ago

10.1128/genomeA.00802-14

Whole-Genome Sequences of Three Symbiotic <i>Endozoicomonas</i> Strains
Cited by: 52
Author(s): Matthew J. Neave, Craig Michell, Amy Apprill, Christian R. Voolstra
Software Mentions: 2
Published: about 12 years ago

10.1186/gb-2009-10-9-r94

De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
Cited by: 141
Author(s): Scott DiGuistini, Nancy Liao, Darren Platt, Gordon Robertson, Michael Seidel, Simon K. Chan, T. Roderick Docking, İnanç Birol, Robert A. Holt, Martin Hirst, Elaine R. Mardis, Marco A. Marra, Richard Hamelin, Jörg Bohlmann, Colette Breuil, Steven J.M. Jones
Software Mentions: 2
Published: almost 18 years ago

10.1093/jxb/erv203

RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening
Cited by: 166
Author(s): Bin Zhu, Yanmin Yang, Ran Li, Daqi Fu, Liwei Wen, Yunbo Luo, Hongliang Zhu
Software Mentions: 2
Published: over 11 years ago

10.1093/jxb/erx336

A disulfide bond A-like oxidoreductase is a strong candidate gene for self-incompatibility in apricot (Prunus armeniaca) pollen
Cited by: 20
Author(s): Juan Vicente Muñoz-Sanz, Elena Zuriaga, M. L. Badenes, Carlos Romero
Software Mentions: 2
Published: about 9 years ago

10.1093/jxb/erx384

Novel phosphate deficiency-responsive long non-coding RNAs in the legume model plant Medicago truncatula
Cited by: 74
Author(s): Tianzuo Wang, Mingfeng Zhao, Xiuxiu Zhang, Min Liu, Chen-ge Yang, Yuhui Chen, Rujin Chen, Jiangqi Wen, Kirankumar S. Mysore, Wenhao Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1093/jxb/erz541

Mutations of two FERONIA-like receptor genes enhance rice blast resistance without growth penalty
Cited by: 35
Author(s): Zhuhong Yang, Junjie Xing, Long Wang, Yue Liu, Jianing Qu, Yang Tan, Xiqin Fu, Qinlu Lin, Huafeng Deng, Feng Yu
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1004744

Elucidation of Sigma Factor-Associated Networks in Pseudomonas aeruginosa Reveals a Modular Architecture with Limited and Function-Specific Crosstalk
Cited by: 122
Author(s): Sebastian Schulz, Denitsa Eckweiler, Agata Bielecka, Tanja Nicolai, Raimo Franke, Andreas Dötsch, Klaus Hornischer, Sebastian Bruchmann, Juliane Düvel, Susanne Häußler
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.ppat.1006582

Streptococcus pneumoniae in the heart subvert the host response through biofilm-mediated resident macrophage killing
Cited by: 53
Author(s): A.T. Shenoy, Terry Brissac, Ryan P. Gilley, Nikhil Kumar, Yong Wang, Norberto González-Juarbe, Whitney S. Hinkle, Sean C. Daugherty, Amol C. Shetty, Sandra Ott, Luke J. Tallon, Jessy Deshane, Hervé Tettelin, Carlos J. Orihuela
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.ppat.1007461

The Transcriptional landscape of Streptococcus pneumoniae TIGR4 reveals a complex operon architecture and abundant riboregulation critical for growth and virulence
Cited by: 30
Author(s): Indu Warrier, Nikhil Ram-Mohan, Zeyu Zhu, Ariana Hazery, Haley Echlin, Jason Rosch, Michelle M. Meyer, Tim van Opijnen
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.ppat.1009447

A heterochromatin inducing protein differentially recognizes self versus foreign genomes
Cited by: 7
Author(s): Eric Burton, Ibukun A. Akinyemi, Tiffany R. Frey, Huanzhou Xu, Xiaofan Li, Lai Jing Su, Jizu Zhi, Michael T. McIntosh, Sumita Bhaduri‐McIntosh
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009886

A 3,000-year-old, basal S. enterica lineage from Bronze Age Xinjiang suggests spread along the Proto-Silk Road
Cited by: 7
Author(s): Xutong Wu, Chao Ning, Felix M. Key, Aida Andrades Valtueña, Aditya Kumar Lankapalli, Shizhu Gao, Yang Xuan, Fan Zhang, Linlin Liu, Zhongzhi Nie, Jian Ma, Johannes Krause, Alexander Herbig, Yinqiu Cui
Software Mentions: 2
Published: about 5 years ago

10.1186/1742-4690-11-17

Direct non-productive HIV-1 infection in a T-cell line is driven by cellular activation state and NFκB
Cited by: 35
Author(s): Matthew S. Dahabieh, Marcel Ooms, Chanson J. Brumme, Jeremy M. G. Taylor, P. Richard Harrigan, Viviana Simon, Ivan Sadowski
Software Mentions: 2
Published: over 12 years ago

10.1186/1742-4690-10-126

Functional conservation of HIV-1 Gag: implications for rational drug design
Cited by: 56
Author(s): Guangdi Li, Jens Verheyen, Soo-Yon Rhee, Arnout Voet, Anne‐Mieke Vandamme, Kristof Theys
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12284-019-0270-5

Expression Divergence as an Evolutionary Alternative Mechanism Adopted by Two Rice Subspecies Against Rice Blast Infection
Cited by: 8
Author(s): Zhenhui Zhong, Lian‐Yu Lin, Meilian Chen, Lili Lin, Xiaofeng Chen, Yunzhi Lin, Xi Chen, Zonghua Wang, Justice Norvienyeku, Huakun Zheng
Software Mentions: 2
Published: over 7 years ago

10.1126/sciadv.abh3032

Identification of SARS-CoV-2–induced pathways reveals drug repurposing strategies
Cited by: 26
Author(s): Namshik Han, Woochang Hwang, Konstantinos Tzelepis, Patrick Schmerer, Eliza Yankova, Méabh MacMahon, Winnie Lei, Nicholas M Katritsis, Anika Liu, Ulrike Felgenhauer, Alison Schuldt, Robert G. Harris, Kathryn Chapman, Frank McCaughan, Friedemann Weber, Tony Kouzarides
Software Mentions: 2
Published: over 5 years ago

10.1038/sdata.2015.72

Species-wide genome sequence and nucleotide polymorphisms from the model allopolyploid plant Brassica napus
Cited by: 50
Author(s): Thomas Schmutzer, Birgit Samans, Emmanuelle Dyrszka, Chris Ulpinnis, Stéphan Weise, Doreen Stengel, Christian Colmsee, Denis Lespinasse, Zeljko Micic, Stefan Abel, Peter Duchscherer, Frank Breuer, Amine Abbadi, Gunhild Leckband, Rod J. Snowdon, Uwe Scholz
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep14941

Profiling RNA editing in human tissues: towards the inosinome Atlas
Cited by: 187
Author(s): Ernesto Picardi, Caterina Manzari, Francesca Mastropasqua, Italia Aiello, Anna Maria D’Erchia, Graziano Pesole
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep15443

Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations
Cited by: 75
Author(s): Abdallah Abdallah, Grant A. Hill-Cawthorne, Thomas D. Otto, Francesc Español i Coll, José Afonso Guerra-Assunção, Ge Gao, Raeece Naeem, Hifzur Rahman Ansari, Tareq B. Malas, Sabir A. Adroub, Theo Verboom, Roy Ummels, Huoming Zhang, Aswini K. Panigrahi, Ruth McNerney, Roland Brosch, Taane G. Clark, Marcel A. Behr, Wilbert Bitter, Arnab Pain
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep18227

MycoCAP - Mycobacterium Comparative Analysis Platform
Cited by: 4
Author(s): Siew Woh Choo, Mia Yang Ang, Avirup Dutta, Shi Tan, Cheuk Chuen Siow, Hamed Heydari, Naresh V.R. Mutha, Wei Yee Wee, George T.F. Wong
Software Mentions: 2
Published: almost 11 years ago

10.1038/srep20650

Feature co-localization landscape of the human genome
Cited by: 11
Author(s): Siu-Kin Ng, Taobo Hu, Xi Long, Colin Chan, Suk Ying Tsang, Hong Xue
Software Mentions: 2
Published: over 10 years ago

10.1038/srep24501

The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts
Cited by: 84
Author(s): Chao Bian, Yinchang Hu, Vydianathan Ravi, Irina M. Kuznetsova, Xueyan Shen, Xuemei Mu, Yu Sun, Xinxin You, Jia Li, Xiaofeng Li, Ying Qiu, Boon-Hui Tay, Natascha May Thevasagayam, Aleksey Komissarov, Vladimir A. Trifonov, Мarsel R. Kabilov, Alexey E. Tupikin, Jingjing Luo, Yi Liu, Hongmei Song, Chao Liu, Xuejie Wang, Donghong Gu, Yexin Yang, Wujiao Li, Gianluca Polgar, Guangyi Fan, Peng Zeng, He Zhang, Zijun Xiong, Zhujing Tang, Chao Peng, Zhiqiang Ruan, Hui Yu, Jieming Chen, Mingjun Fan, Yu Huang, Min Wang, Xiaomeng Zhao, Guojie Hu, Huanming Yang, Jian Wang, Jun Wang, Xun Xu, Linsheng Song, Gaosi Xu, Pao Xu, Junmin Xu, Stephen J. O’Brien, László Orbán, Byrappa Venkatesh, Qiong Shi
Software Mentions: 2
Published: over 10 years ago

10.1038/srep29017

Genome-scale DNA variant analysis and functional validation of a SNP underlying yellow fruit color in wild strawberry
Cited by: 64
Author(s): Charles Hawkins, Julie Caruana, Erin Schiksnis, Zhongchi Liu
Software Mentions: 2
Published: about 10 years ago

10.1038/srep30158

The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features
Cited by: 28
Author(s): Songtao Gui, Zhihua Wu, Hongyuan Zhang, Yinzhen Zheng, Zhixuan Zhu, Dequan Liang, Yi Ding
Software Mentions: 2
Published: about 10 years ago

10.1038/srep30135

Full transcription of the chloroplast genome in photosynthetic eukaryotes
Cited by: 46
Author(s): Chao Shi, Shuo Wang, Enhua Xia, Jianjun Jiang, Fan-Chun Zeng, Li‐Zhi Gao
Software Mentions: 2
Published: about 10 years ago

10.1038/srep31209

Dysregulated immune system networks in war veterans with PTSD is an outcome of altered miRNA expression and DNA methylation
Cited by: 69
Author(s): Marpe Bam, Xiaoming Yang, Elizabeth E. Zumbrun, Zhimin Yin, Juhua Zhou, J. P. Ginsberg, Quinne Leyden, Jiajia Zhang, Prakash Nagarkatti, Mitzi Nagarkatti
Software Mentions: 2
Published: about 10 years ago

10.1038/srep32013

Evolutionary and Expression Analysis Provides Evidence for the Plant Glutamate-like Receptors Family is Involved in Woody Growth-related Function
Cited by: 13
Author(s): Jianqing Chen, Yinghui Jing, Xinyue Zhang, Leiting Li, Peng Wang, Shaoling Zhang, Hongsheng Zhou, Juyou Wu
Software Mentions: 2
Published: about 10 years ago

10.1038/srep28594

The rubber tree genome shows expansion of gene family associated with rubber biosynthesis
Cited by: 91
Author(s): Nyok-Sean Lau, Yuko Makita, Mika Kawashima, Todd D. Taylor, Shinji Kondo, Ahmad Sofiman Othman, Alexander Chong Shu‐Chien, Minami Matsui
Software Mentions: 2
Published: over 10 years ago

10.1038/srep32598

Emergence and evolution of inter-specific segregating retrocopies in cynomolgus monkey (Macaca fascicularis) and rhesus macaque (Macaca mulatta)
Cited by: 2
Author(s): Xu Zhang, Zhilin Qu, Bing Su
Software Mentions: 2
Published: about 10 years ago

10.1038/srep40579

Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts
Cited by: 160
Author(s): Matthew J. Neave, Craig Michell, Amy Apprill, Christian R. Voolstra
Software Mentions: 2
Published: over 9 years ago

10.1038/srep41124

Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.)
Cited by: 49
Author(s): Kazuki Mori, Kenta Shirasawa, Hitoshi Nogata, Chiharu Hirata, Kosuke Tashiro, Toshiyuki Habu, Sangwan Kim, Shuichi Himeno, Satoru Kuhara, Hiroyasu Ikegami
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-01446-4

Analysis of biofilm bacterial communities under different shear stresses using size-fractionated sediment
Cited by: 38
Author(s): Hongwei Fang, Yishan Chen, Lei Huang, Guojian He
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-03445-x

Genome-wide analysis of gene expression and protein secretion of Babesia canis during virulent infection identifies potential pathogenicity factors
Cited by: 26
Author(s): Ramon M. Eichenberger, Chandra Ramakrishnan, Giancarlo Russo, Peter Deplazes, Adrian B. Hehl
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-03923-2

Nitric oxide mediated transcriptional modulation enhances plant adaptive responses to arsenic stress
Cited by: 82
Author(s): Pradyumna Kumar Singh, Yuvraj Indoliya, Abhisekh Singh Chauhan, Surendra Singh, Amit Singh, Sanjay Dwivedi, Rudra Deo Tripathi, Debasis Chakrabarty
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-05312-1

Molecular ecological network analysis reveals the effects of probiotics and florfenicol on intestinal microbiota homeostasis: An example of sea cucumber
Cited by: 44
Author(s): Gang Yang, Mo Peng, Xiangli Tian, Shuanglin Dong
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-07039-5

Transcriptomic signature of the follicular somatic compartment surrounding an oocyte with high developmental competence
Cited by: 22
Author(s): Satoshi Sugimura, Norio Kobayashi, Hiroaki Okae, T. Yamanouchi, Hideo Matsuda, Tatsuhiro Kojima, Akira Yajima, Y. Hashiyada, Masahiro Kaneda, Kei Sato, Kyoichi Imai, Kentaro Tanemura, Takahiro Arima, Robert B. Gilchrist
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-08256-8

Linkage mapping aided by de novo genome and transcriptome assembly in Portunus trituberculatus: applications in growth-related QTL and gene identification
Cited by: 22
Author(s): Jianjian Lv, Bingbo Gao, Ping Liu, Jian Li, Xianliang Meng
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-11466-9

Evaluation of single-cell genomics to address evolutionary questions using three SAGs of the choanoflagellate Monosiga brevicollis
Cited by: 19
Author(s): Lior David, Xavier Grau‐Bové, Amy Guillaumet-Adkins, Marta Gut, Michael E. Sieracki, Iñaki Ruiz‐Trillo
Software Mentions: 2
Published: about 9 years ago