Ecosyste.ms: Papers

10.3390/ijms20123053

Whole Genome Sequencing and Analysis of Chlorimuron-Ethyl Degrading Bacteria Klebsiella pneumoniae 2N3
Cited by: 7
Author(s): Cheng Zhang, Qingkai Hao, Zhengyi Zhang, Xianghui Zhang, Hongyu Pan, Jiahuan Zhang, Hao Zhang, Fengjie Sun
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20133180

Genome-Wide Identification and Expression Profiling of the Polygalacturonase (PG) and Pectin Methylesterase (PME) Genes in Grapevine (Vitis vinifera L.)
Cited by: 31
Author(s): Nadeem Khan, Fizza Fatima, Muhammad Salman Haider, Hamna Shazadee, Zhongjie Liu, Ting Zheng, Jinggui Fang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20174319

Identification and Functional Analysis of the CLAVATA3/EMBRYO SURROUNDING REGION (CLE) Gene Family in Wheat
Cited by: 15
Author(s): Zheng Li, Dan Liú, Yu Xia, Ziliang Li, Na Niu, Shen Ma, Junwei Wang, Yulong Song, Gaisheng Zhang
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20174103

Systematic Analysis of Differentially Expressed Maize ZmbZIP Genes between Drought and Rewatering Transcriptome Reveals bZIP Family Members Involved in Abiotic Stress Responses
Cited by: 22
Author(s): Liru Cao, LU Xin-shi, Pengyu Zhang, Guorui Wang, Wei Li, Tongchao Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20174115

Identification and in Silico Characterization of GT Factors Involved in Phytohormone and Abiotic Stresses Responses in Brachypodium distachyon
Cited by: 0
Author(s): Feng Wen, Li Xu, Yuebin Xie, Liwen Liang, Ming Jia, Xinsheng Liu, Xiaozhu Wu
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20184553

Genomic Organization of the B3-Domain Transcription Factor Family in Grapevine (Vitis vinifera L.) and Expression during Seed Development in Seedless and Seeded Cultivars
Cited by: 28
Author(s): Bilal Ahmad, Songlin Zhang, Jin Yao, Mati Ur Rahman, Muhammad Hanif, Yanxun Zhu, Xiping Wang
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20235974

Genome-Wide Identification and Analysis of the NPR1-Like Gene Family in Bread Wheat and Its Relatives
Cited by: 13
Author(s): Xian Liu, Zhiguo Liu, Xinhui Niu, Qian Xu, Long Yang
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms20246167

Genome-Wide Identification and Expression Analysis of the Ascorbate Oxidase Gene Family in Gossypium hirsutum Reveals the Critical Role of GhAO1A in Delaying Dark-Induced Leaf Senescence
Cited by: 9
Author(s): Ze Ya Pan, Lihua Chen, Fei Wang, Wangyang Song, Aiping Cao, Shuangquan Xie, Xifeng Chen, Xiang Jin, Hongbin Li
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21010321

Histone Deacetylase (HDAC) Gene Family in Allotetraploid Cotton and Its Diploid Progenitors: In Silico Identification, Molecular Characterization, and Gene Expression Analysis under Multiple Abiotic Stresses, DNA Damage and Phytohormone Treatments
Cited by: 20
Author(s): Muhammad Imran, Sarfraz Shafiq, Muhammad Kashif Naeem, Émilie Widemann, Muhammad Zeeshan Munir, Kevin B. Jensen, Richard R.‐C. Wang
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21020628

Placenta-Specific Genes, Their Regulation During Villous Trophoblast Differentiation and Dysregulation in Preterm Preeclampsia
Cited by: 24
Author(s): András Szilágyi, Zsolt Gelencser, Roberto Romero, Yi Xu, Péter Király, Attila Demeter, János Pálhalmi, Balázs Győrffy, Kata Juhász, Petronella Hupuczi, Katalin A. Kékesi, Gerold Meinhardt, Zoltán Papp, Sorin Drăghici, Offer Erez, Adi L. Tarca, Martin Knöfler, Nándor Gábor Than
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21020608

Genome-Wide Investigation of Heat Shock Transcription Factor Family in Wheat (Triticum aestivum L.) and Possible Roles in Anther Development
Cited by: 23
Author(s): Jiali Ye, Xiaohong R. Yang, Hu Gan, Qi Liu, Wei Li, Lingli Zhang, Xiyue Song
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21020634

Genome-Wide Identification and Characterization of the NAC Transcription Factor Family in Musa Acuminata and Expression Analysis during Fruit Ripening
Cited by: 32
Author(s): Bin Li, Ruiyi Fan, Qiaosong Yang, Chunhua Hu, Ou Sheng, Guiming Deng, Tingting Dong, Chunyu Li, Xinxiang Peng, Fangcheng Bi, Ganjun Yi
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21031000

Comprehensive Profiling of Tubby-Like Protein Expression Uncovers Ripening-Related TLP Genes in Tomato (Solanum lycopersicum)
Cited by: 15
Author(s): Yaoxin Zhang, Xiaoqing He, Dan Su, Feng Yuan, Haochen Zhao, Heng Deng, Mingchun Liu
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21041293

Characterization of the OFP Gene Family and its Putative Involvement of Tuberous Root Shape in Radish
Cited by: 8
Author(s): Yanping Wang, Qingbiao Wang, Hao Wu, Honghe Sun, Li Zhang
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21124436

The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase
Cited by: 8
Author(s): Xianjun Li, Junhuan Wang, Jia Yang, Aikebaier Reheman, Yanchun Yan
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21155344

Identification and Expression Analysis of Hormone Biosynthetic and Metabolism Genes in the 2OGD Family for Identifying Genes That May Be Involved in Tomato Fruit Ripening
Cited by: 6
Author(s): Qiangqiang Ding, Zhen Wang, Juan Xue, Xinxin Yang, Jun Fan, Hong Chen, Yang Li, Hongmiao Wu
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21175947

Genome-Wide Systematic Characterization of the NPF Family Genes and Their Transcriptional Responses to Multiple Nutrient Stresses in Allotetraploid Rapeseed
Cited by: 22
Author(s): Hao Zhang, Shuang Li, M. Shi, Sheliang Wang, Lei Shi, Fangsen Xu, Guangda Ding
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21186729

Whole-Genome Sequencing Analysis of Quorum Quenching Bacterial Strain Acinetobacter lactucae QL-1 Identifies the FadY Enzyme for Degradation of the Diffusible Signal Factor
Cited by: 13
Author(s): Yao Tian, Tianxing Zhou, Xudan Xu, Wenping Zhang, Xinghui Fan, Sandhya Mishra, Lian-Hui Zhang, Xin Zhou, Shaohua Chen
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21186709

Identification, Characterization, and Genomic Analysis of Novel Serratia Temperate Phages from a Gold Mine
Cited by: 11
Author(s): Katarzyna Bujak, Przemysław Decewicz, Jacek Kamiński, Monika Radlińska
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21217876

Dual Effect of Soloxolone Methyl on LPS-Induced Inflammation In Vitro and In Vivo
Cited by: 9
Author(s): Andrey Markov, Aleksandra V. Sen’kova, Valeriya O. Babich, Kirill V. Odarenko, Vadim A Talyshev, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21218064

An Earliest Endosymbiont, Wolbachia massiliensis sp. nov., Strain PL13 from the Bed Bug (Cimex hemipterus), Type Strain of a New Supergroup T
Cited by: 20
Author(s): Younes Laidoudi, Anthony Levasseur, Hacène Medkour, Mossaab Maaloum, Mariem Ben Khedher, Masse Sambou, Hubert Bassène, Bernard Davoust, Florence Fénollar, Didier Raoult, Oleg Mediannikov
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21218262

Genome-Wide Identification and Functional Characterization of the Cation Proton Antiporter (CPA) Family Related to Salt Stress Response in Radish (Raphanus sativus L.)
Cited by: 18
Author(s): Yan Wang, Jiali Ying, Zhangping Yang, Liang Xu, Wanting Zhang, Meng Ni, Yuelin Zhu, Liwang Liu
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21228639

Whole Genome Sequencing and Tn5-Insertion Mutagenesis of Pseudomonas taiwanensis CMS to Probe Its Antagonistic Activity Against Rice Bacterial Blight Disease
Cited by: 1
Author(s): Wen-Jen Chen, Tzu-Yen Kuo, Chun-Yi Chen, Feng-Chia Hsieh, Yu Liang Yang, Je-Ruei Liu, Ming-Che Shih
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22052699

Genome Wide Analysis of U-Box E3 Ubiquitin Ligases in Wheat (Triticum aestivum L.)
Cited by: 14
Author(s): Dae Yeon Kim, Yong Jin Lee, Min Jeong Hong, Jae Ho Kim, Yong Weon Seo
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22062821

Genome-Wide Identification and Characterization of AP2/ERF Transcription Factor Family Genes in Oil Palm under Abiotic Stress Conditions
Cited by: 14
Author(s): Lixia Zhou, Rajesh Yarra
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22094625

Genome-Wide Analysis, Evolutionary History and Response of ALMT Family to Phosphate Starvation in Brassica napus
Cited by: 0
Author(s): Ismail Din, Ihteram Ullah, Wei Wang, Hao Zhang, Lei Shi
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22126585

Genome-Wide Identification, Diversification, and Expression Analysis of Lectin Receptor-Like Kinase (LecRLK) Gene Family in Cucumber under Biotic Stress
Cited by: 10
Author(s): Muhammad Salman Haider, Savitha De Britto, Geetha Nagaraj, Gurulingaiah Bhavya, Ravikant Shekhar, Itó S, Sudisha Jogaiah
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22179651

Genome-Wide Identification and Analysis of the Metallothionein Genes in Oryza Genus
Cited by: 6
Author(s): Ming Huei Cheng, Huanran Yuan, Ruihua Wang, Jianing Zou, Ting Liang, Fang Yang, Shaoqing Li
Software Mentions: 1
Published: about 3 years ago

10.3390/ijms22189862

Identification of FadT as a Novel Quorum Quenching Enzyme for the Degradation of Diffusible Signal Factor in Cupriavidus pinatubonensis Strain HN-2
Cited by: 5
Author(s): Xudan Xu, Yongsheng Tian, Wenping Zhang, Tianxing Zhou, Xin Zhou, Weigang Dai, Shaohua Chen
Software Mentions: 1
Published: about 3 years ago

10.3390/ijms221810056

Identification and Characterization of Novel circRNAs Involved in Muscle Growth of Blunt Snout Bream (Megalobrama amblycephala)
Cited by: 3
Author(s): Lifang Liu, Yulong Chen, Jinghan Diao, Le Luo, Zexia Gao
Software Mentions: 1
Published: about 3 years ago

10.1007/s11060-020-03631-4

Gamma Knife Radiosurgery does not alter the copy number aberration profile in sporadic vestibular schwannoma
Cited by: 1
Author(s): Aril Løge Håvik, Ove Bruland, Dhanushan Dhayalan, Morten Lund‐Johansen, Per-Morten Knappskog
Software Mentions: 1
Published: about 4 years ago

10.1016/j.isci.2020.101241

ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era
Cited by: 49
Author(s): Songtao Gui, L. Yang, Jianbo Li, Jingyun Luo, Xiaokai Xu, Jianyu Yuan, Lu Chen, Wenqiang Li, Xin Yang, Shenshen Wu, Shuyan Li, Yuebin Wang, Yabing Zhu, Qiang Gao, Ning Yang, Jianbing Yan
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.7817

Identification of FGF19 as a prognostic marker and potential driver gene of lung squamous cell carcinomas in Chinese smoking patients
Cited by: 27
Author(s): Qiang Tan, Li Fan, Guan Wang, Weiliang Xia, Ziming Li, Xiaomin Niu, Wei Ji, Hong Ye, Qiang Xu, Qingquan Luo, Jie Zhang, Shun Lü
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.8002

Determination of somatic oncogenic mutations linked to target-based therapies using MassARRAY technology
Cited by: 10
Author(s): Maider Ibarrola‐Villava, Tania Fleitas, Marta J. Llorca-Cardeñosa, Cristina Mongort, Elisa Alonso, Samuel Navarro, Octavio Burgués, Ana Vivancos, Juan Miguel Cejalvo, Jose Alejandro Pérez-Fidalgo, Susana Roselló, Gloría Ribas, Andrés Cervantes
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.8322

Transcriptome-wide analysis of compression-induced microRNA expression alteration in breast cancer for mining therapeutic targets
Cited by: 23
Author(s): Baek Gil Kim, Suki Kang, Hyunho Han, Juhyun Lee, Ji Eun Kim, Sung Hwan Lee, Nam Hoon Cho
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.9080

EphB6 overexpression and <i>Apc</i> mutation together promote colorectal cancer
Cited by: 19
Author(s): Da Xu, Long Yuan, Xin Liu, Mingqi Li, Fubin Zhang, Xin Gu, Dongwei Zhang, Youlin Yang, Binbin Cui, Jinxue Tong, Jin Zhou, Zhiwei Yu
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.9077

Th17 cytokine differentiation and loss of plasticity after SOCS1 inactivation in a cutaneous T-cell lymphoma
Cited by: 16
Author(s): Stefan Ehrentraut, Björn Schneider, Stefan Nagel, Claudia Pommerenke, Hilmar Quentmeier, Robert Geffers, Maren Feist, Maren Kaufmann, Corinna Meyer, Marshall E. Kadin, Hans Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.10534

The prognostic value of a seven-microRNA classifier as a novel biomarker for the prediction and detection of recurrence in glioma patients
Cited by: 21
Author(s): Wanghao Chen, Qiang Yu, Bin Chen, Xingyu Lu, Qiaoyu Li
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.10778

Genomic complexity and dynamics of clonal evolution in childhood acute myeloid leukemia studied with whole-exome sequencing
Cited by: 22
Author(s): Riccardo Masetti, Ilaria Castelli, Annalisa Astolfi, Salvatore Nicola Bertuccio, Valentina Indio, Marco Togni, Tamara Belotti, Salvatore Serravalle, Giuseppe Tarantino, Marco Zecca, Martina Pigazzi, Giuseppe Basso, Andrea Pession, Franco Locatelli
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.13642

New differentially expressed genes and differential DNA methylation underlying refractory epilepsy
Cited by: 31
Author(s): Xi Liu, Shu Ou, Tao Xu, Shiyong Liu, Jinxian Yuan, Hao Huang, Qiong Lu, Hui Yang, Lifen Chen, Xu Tan, Yangmei Chen
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.15043

Whole-genome sequencing identifies new genetic alterations in meningiomas
Cited by: 16
Author(s): Ming Tang, Wei Heng, Lu Han, Jiaojiao Deng, Yuelong Wang, Meng Yang, YH Tang, Gang Guo, Liangxue Zhou, Aiping Tong
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.15428

Whole genome sequencing of matched tumor, adjacent non-tumor tissues and corresponding normal blood samples of hepatocellular carcinoma patients revealed dynamic changes of the mutations profiles during hepatocarcinogenesis
Cited by: 8
Author(s): Rong Mao, Jie Liu, Guanfeng Liu, Shanshan Jin, Quan Xue, Liang Ma, Yan Fu, Na Zhao, Jinliang Xing, Lanjuan Li, Yunqing Qiu, Biaoyang Lin
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.16442

Circular RNA alterations are involved in resistance to avian leukosis virus subgroup-J-induced tumor formation in chickens
Cited by: 47
Author(s): Xinheng Zhang, Yongde Yan, Xiaoya Lei, Aijun Li, Huanmin Zhang, Zhenkai Dai, Xinjian Li, Weiguo Chen, Wencheng Lin, Feng Chen, Jingyun Ma, Qingmei Xie
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.16781

Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes
Cited by: 21
Author(s): Madalene A. Earp, Raghavan Rama, Qian Li, Junqiang Dai, Stacey J. Winham, Julie M. Cunningham, Yanina Natanzon, Kimberly R. Kalli, Xiaonan Hou, S. John Weroha, Paul Haluska, Kate Lawrenson, Simon A. Gayther, Chen Wang, Ellen L. Goode, Brooke L. Fridley
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.18362

Differentially expressed lncRNAs and miRNAs with associated ceRNA networks in aged mice with postoperative cognitive dysfunction
Cited by: 41
Author(s): Changwei Wei, Ting Luo, Sheng Zou, Xiujuan Zhou, Wenzhen Shen, Xiaolin Ji, Qi Li, Anshi Wu
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.27085

Deep insights into the response of human cervical carcinoma cells to a new cyano enone-bearing triterpenoid soloxolone methyl: a transcriptome analysis
Cited by: 10
Author(s): Andrey Markov, Alexander Kel, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: about 5 years ago

10.1515/biol-2020-0032

Changes in the fecal microbiome of the Yangtze finless porpoise during a short-term therapeutic treatment
Cited by: 4
Author(s): Lei You, Congping Ying, Kai Li, Xizhao Zhang, Danqing Lin, Denghua Yin, Jialü Zhang, Pao Xu
Software Mentions: 1
Published: over 4 years ago

10.1186/1750-1172-8-33

Small cell ovarian carcinoma: genomic stability and responsiveness to therapeutics
Cited by: 38
Author(s): Lisa F Gamwell, Karen Gambaro, Maria Merziotis, Colleen Crane, Suzanna L. Arcand, Valerie Bourada, Christopher M. Davis, Jeremy A. Squire, David G. Huntsman, Patricia N. Tonin, Barbara C. Vanderhyden
Software Mentions: 1
Published: over 11 years ago

10.1128/JVI.02079-19

Kaposi’s Sarcoma-Associated Herpesvirus Lytic Replication Is Independent of Anaphase-Promoting Complex Activity
Cited by: 1
Author(s): Endrit Elbasani, Silvia Gramolelli, Thomas Guenther, Ildar Gabaev, Adam Grundhoff, Päivi M. Ojala
Software Mentions: 1
Published: over 4 years ago

10.1186/s12967-020-02480-z

The current landscape of coronavirus-host protein–protein interactions
Cited by: 62
Author(s): Laure Perrin-Cocon, Olivier Diaz, Clémence Jacquemin, Valentine Barthel, Eva Ogire, Christophe Ramière, Patrice André, Vincent Lotteau, Pierre‐Olivier Vidalain
Software Mentions: 1
Published: over 4 years ago

10.1007/s13205-018-1140-3

Whole-genome resequencing and transcriptomic analysis of genes regulating anthocyanin biosynthesis in black rice plants
Cited by: 15
Author(s): Jae-Hyeon Oh, Yeji Lee, Eun-Ju Byeon, Byeong-Chul Kang, Dong-Soo Kyeoung, Chang-Kug Kim
Software Mentions: 1
Published: almost 7 years ago