Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Circos

https://packages.ecosyste.ms/registries/pypi.org/packages/Circos

Circos plots in Python!
10 versions
Latest release: about 1 year ago
55 downloads last month

Papers Mentioning Circos 2,252

10.1186/s13099-015-0059-z
Draft genomes of four enterotoxigenic Escherichia coli (ETEC) clinical isolates from China and Bangladesh
Cited by: 5
Author(s): Fei Liu, Xi Yang, Zhiyun Wang, Matilda Nicklasson, Firdausi Qadri, Yi Yao, Yezi Zhu, Na Lv, Jing Li, Ruifen Zhang, Huijuan Guo, Baoli Zhu, Åsa Sjöling, Yongfei Hu
Software Mentions: 1
Published: over 9 years ago
10.1186/s13099-017-0156-2
Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea
Cited by: 3
Author(s): Taesoo Kwon, Won Kim, Seung-Hak Cho
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13099-017-0216-7
Complete genome sequence of the Vibrio vulnificus strain VV2014DJH, a human-pathogenic bacterium isolated from a death case in China
Cited by: 2
Author(s): Junhang Pan, Yi Sun, Wenwu Yao, Haiyan Mao, Yanjun Zhang, Maoyan Zhu
Software Mentions: 1
Published: about 7 years ago
10.1186/s13099-019-0284-y
The complete genome and methylome of Helicobacter pylori hpNEAfrica strain HP14039
Cited by: 4
Author(s): Binit Lamichhane, Eng Guan Chua, Michael J. Wise, Connor Laming, Barry J. Marshall, Chin Yen Tay
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13099-019-0298-5
Genomic characterization of Escherichia coli LCT-EC001, an extremely multidrug-resistant strain with an amazing number of resistance genes
Cited by: 7
Author(s): Xuelin Zhang, Saisong Xiao, Xuege Jiang, Yun Li, Fan Zhang, Yi Yu, Peng Wang, Diangeng Li, Xian Zhao, Changting Liu
Software Mentions: 1
Published: over 5 years ago
10.1186/s13099-021-00399-4
The genomic characterisation and comparison of Bacillus cereus strains isolated from indoor air
Cited by: 6
Author(s): Balakrishnan N. V. Premkrishnan, Cassie E. Heinle, Akira Uchida, Rikky W. Purbojati, Kavita K. Kushwaha, Alexander Putra, Puramadathil Sasi Santhi, Benjamin W. Y. Khoo, Anthony Wong, Vineeth Kodengil Vettath, Daniela I. Drautz–Moses, Ana Carolina M. Junqueira, Stephan C. Schuster
Software Mentions: 1
Published: almost 4 years ago
10.1097/HS9.0000000000000031
Molecular Profiling Defines Distinct Prognostic Subgroups in Childhood AML: A Report From the French ELAM02 Study Group
Cited by: 36
Author(s): Alice Marceau-Renaut, Nicolas Duployez, Benoît Ducourneau, Myriam Labopin, Arnaud Petit, Alexandra Rousseau, Sandrine Geffroy, Maria Pia Bucci, Wendy Cuccuini, Odile Fenneteau, Philippe Ruminy, Brigitte Nelken, Stéphane Ducassou, Virginie Gandemer, Thierry Leblanc, Michel Gautier, Yves Bertrand, André Baruchel, Guy Leverger, Claude Preudhomme, Hélène Lapillonne
Software Mentions: 1
Published: almost 7 years ago
10.1002/hon.2864
Targeted locus amplification to detect molecular markers in mantle cell and follicular lymphoma
Cited by: 5
Author(s): Elisa Genuardi, Petra Klous, Barbara Mantoan, Daniela Drandi, Martina Ferrante, Federica Cavallo, Beatrice Alessandria, Irene Dogliotti, Daniele Grimaldi, S Ragaini, Michele Clerico, Mariella Lo Schirico, Elona Saraci, Mehmet Yılmaz, Gian Maria Zaccaria, Sergio Cortelazzo, Umberto Vitolo, Stefano Luminari, Massimo Federico, Mario Boccadoro, Max van Min, Erik Splinter, Marco Ladetto, Simone Ferrero
Software Mentions: 1
Published: over 3 years ago
10.1186/s13053-016-0049-2
PALB2: research reaching to clinical outcomes for women with breast cancer
Cited by: 26
Author(s): Melissa C. Southey, Ingrid Winship, Tú Nguyen-Dumont
Software Mentions: 1
Published: over 8 years ago
10.1038/s41437-021-00459-0
Combining conventional QTL analysis and whole-exome capture-based bulk-segregant analysis provides new genetic insights into tuber sprout elongation and dormancy release in a diploid potato population
Cited by: 4
Author(s): Sanjeev Kumar Sharma, Karen McLean, Richard Colgan, D. Rees, Stephen Young, Mads Sønderkær, Leon A. Terry, Colin Turnbull, Mark A. Taylor, Glenn J. Bryan
Software Mentions: 1
Published: over 3 years ago
10.1038/s41438-019-0223-6
Defect in Brnym1, a magnesium-dechelatase protein, causes a stay-green phenotype in an EMS-mutagenized Chinese cabbage (Brassica campestris L. ssp. pekinensis) line
Cited by: 21
Author(s): Nan Wang, Yun Zhang, Shengnan Huang, Yong Li, Chengyu Li, Hui Feng
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41438-020-00422-w
A chromosome-scale reference genome of Lobularia maritima, an ornamental plant with high stress tolerance
Cited by: 6
Author(s): Li Huang, Ying Ma, Jiebei Jiang, Ting Li, Wenjie Yang, Lei Zhang, Lei Wu, Landi Feng, Zhenxiang Xi, Xiaoting Xu, Jianquan Liu, Quanjun Hu
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41438-021-00479-1
Identification of long noncoding RNAs involved in resistance to downy mildew in Chinese cabbage
Cited by: 17
Author(s): Bin Zhang, Tongbing Su, Pei-Rong Li, Xiaoyun Xin, Yunyun Cao, Weihong Wang, Xiuyun Zhao, Deshuang Zhang, Yangjun Yu, Dayong Li
Software Mentions: 1
Published: over 3 years ago
10.1038/s41438-020-00406-w
High-quality de novo assembly of the Eucommia ulmoides haploid genome provides new insights into evolution and rubber biosynthesis
Cited by: 27
Author(s): Yun Li, Hairong Wei, Jun‐Bo Yang, Kang Du, Li Jiang, Ying Zhang, Tong Qiu, Zhao Liu, Yongyu Ren, Song Luo, Xiangyang Kang
Software Mentions: 1
Published: about 4 years ago
10.1038/s41438-017-0013-y
Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data
Cited by: 41
Author(s): Rubina Jibran, Helge Dzierzon, Nahla V. Bassil, Jill M. Bushakra, Patrick P. Edger, Shawn Sullivan, Chad E. Finn, Michael Dossett, Kelly J. Vining, Robert VanBuren, Todd C. Mockler, Ivan Liachko, Kevin Davies, Toshi Foster, David Chagné
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41438-018-0036-z
Comprehensive analysis of NAC transcription factors and their expression during fruit spine development in cucumber (Cucumis sativus L.)
Cited by: 43
Author(s): Xingwang Liu, Ting Wang, Ezra S. Bartholomew, Kezia Black, Mingming Dong, Yaqi Zhang, Sen Yang, Yanling Cai, Shudan Xue, Yiqun Weng, Huazhong Ren
Software Mentions: 1
Published: over 6 years ago
10.1038/s41438-019-0139-1
Sequencing a Juglans regia × J. microcarpa hybrid yields high-quality genome assemblies of parental species
Cited by: 56
Author(s): Tingting Zhu, Le Wang, Frank M. You, Juan Carlos Rodríguez, Karin R. Deal, Limin Chen, Jie Li, Sandeep Chakraborty, Bipin Balan, Cai‐Zhong Jiang, Patrick J. Brown, Charles A. Leslie, Mallikarjuna K. Aradhya, Abhaya M. Dandekar, Patrick E. McGuire, Daniel A. Kluepfel, Jan Dvořák, Ming Luo
Software Mentions: 1
Published: over 5 years ago
10.1038/s41438-020-0325-1
Molecular identification of the key starch branching enzyme-encoding gene SBE2.3 and its interacting transcription factors in banana fruits
Cited by: 16
Author(s): Hongxia Miao, Ping Sun, Qing Liu, Juhua Liu, Caihong Jia, Di Zhao, Biao Xu, Zhiqiang Jin
Software Mentions: 1
Published: over 4 years ago
10.1038/s41438-019-0176-9
Whole-genome resequencing of Cucurbita pepo morphotypes to discover genomic variants associated with morphology and horticulturally valuable traits
Cited by: 31
Author(s): Aliki Xanthopoulou, Javier Montero‐Pau, Ιfigeneia Mellidou, Christos Kissoudis, José Blanca, Belén Picó, Aphrodite Tsaballa, Eleni Tsaliki, Athanasios Dalakouras, Harry S. Paris, Maria Ganopoulou, Theodoros Moysiadis, Maslin Osathanunkul, Athanasios Tsaftaris, Panagiotis Madesis, Apostolos Kalivas, Ioannis Ganopoulos
Software Mentions: 1
Published: over 5 years ago
10.1038/s41438-020-00343-8
Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing
Cited by: 33
Author(s): J. Wang, Weizhen Liu, Dong Zhu, Po Hong, Shizhong Zhang, Shijun Xiao, Yue Tan, Xin Chen, Li Xu, Xiaojuan Zong, Lisi Zhang, Hairong Wei, Xiaohui Yuan, Qingzhong Li
Software Mentions: 1
Published: over 4 years ago
10.1038/s41438-020-0268-6
The chromosome-scale assembly of the willow genome provides insight into Salicaceae genome evolution
Cited by: 30
Author(s): Suyun Wei, Yonghua Yang, Tongming Yin
Software Mentions: 1
Published: over 4 years ago
10.1038/s41438-021-00594-z
A chromosome-level genome assembly of rugged rose (Rosa rugosa) provides insights into its evolution, ecology, and floral characteristics
Cited by: 24
Author(s): Fei Chen, Liyao Su, Shuaiya Hu, Jia‐Yu Xue, Hui Liu, Guanhua Liu, Yifan Jiang, Jianke Du, Yu Qiao, Yannan Fan, Huan Liu, Qi Yang, Wenjie Lu, Zhu‐Qing Shao, Jian Zhang, Liangsheng Zhang, Feng Chen, Zong‐Ming Cheng
Software Mentions: 1
Published: over 3 years ago
10.1038/s41438-018-0108-0
The chromosome-level quality genome provides insights into the evolution of the biosynthesis genes for aroma compounds of Osmanthus fragrans
Cited by: 72
Author(s): Xia Yang, Yuanzheng Yue, Haiyan Li, Wenjie Ding, Gongwei Chen, Tingting Shi, Junhao Chen, Min S Park, Fei Chen
Software Mentions: 1
Published: about 6 years ago
10.1186/s40249-018-0493-5
Whole-genome sequencing and analysis of Plasmodium falciparum isolates from China-Myanmar border area
Cited by: 17
Author(s): Hai-Mo Shen, Shen-Bo Chen, Yan-Bing Cui, Bin Xu, Kokouvi Kassegne, Eniola Michael Abe, Yue Wang, Jun-Hu Chen
Software Mentions: 1
Published: about 6 years ago
10.1128/IAI.00612-17
The Streptococcus agalactiae Stringent Response Enhances Virulence and Persistence in Human Blood
Cited by: 21
Author(s): Thomas A. Hooven, Andrew J. Catomeris, Maryam Bonakdar, Luke J. Tallon, Ivette Santana-Cruz, Sandra Ott, Sean C. Daugherty, Hervé Tettelin, Adam J. Ratner
Software Mentions: 1
Published: almost 7 years ago
10.7150/jca.48043
Tumor-derived Exosome Promotes Metastasis via Altering its Phenotype and Inclusions
Cited by: 5
Author(s): Yu Zhou, Chen Fan, Xiaodong Xie, Huifang Nie, Shu Lian, Chunlian Zhong, Chengbin Fu, Weiyu Shen, Bifei Li, Yongqing Ye, Yusheng Lu, Jia Lee
Software Mentions: 1
Published: almost 4 years ago
10.3390/jcm9041011
Preclinical Models: Boosting Synergies for Improved Translation
Cited by: 0
Author(s): Chiara Attanasio, Mara Sangiovanni
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-017-17845-6
Cell Cycle Model System for Advancing Cancer Biomarker Research
Cited by: 7
Author(s): Iulia M. Lazar, Ina Hoeschele, Juliana de Morais, Milagros J. Tenga
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-19169-5
Genome and secretome analysis of Pochonia chlamydosporia provide new insight into egg-parasitic mechanisms
Cited by: 18
Author(s): Runmao Lin, F. Xiao-Feng Qin, Baoming Shen, Qianqian Shi, Chichuan Liu, Xi Zhang, Yang Jiao, Jun Lü, Yaoyao Gao, Marta Suarez-Fernandez, Federico López-Moya, Luis Vicente López-Llorca, Gang Wang, Zhenchuan Mao, Jian Ling, Youyou Yang, Xinyue Cheng, Bingyan Xie
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-20399-w
Plastid super-barcodes as a tool for species discrimination in feather grasses (Poaceae: Stipa)
Cited by: 60
Author(s): Katarzyna Krawczyk, Marcin Nobis, Kamil Myszczyński, Ewelina Klichowska, Jakub Sawicki
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-22282-0
High-Throughput Sequencing and Linkage Mapping of a Clownfish Genome Provide Insights on the Distribution of Molecular Players Involved in Sex Change
Cited by: 10
Author(s): Laura Casas, Pablo Saenz‐Agudelo, Xabier Irigoien
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-23053-7
Resolving the complete genome of Kuenenia stuttgartiensis from a membrane bioreactor enrichment using Single-Molecule Real-Time sequencing
Cited by: 37
Author(s): J. Howard Frank, Sebastian Lücker, Rolf H. A. M. Vossen, Mike S. M. Jetten, Richard J. Hall, Huub J. M. Op den Camp, Seyed Yahya Anvar
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-27134-5
Skin Microbiota in Obese Women at Risk for Surgical Site Infection After Cesarean Delivery
Cited by: 20
Author(s): Kara M. Rood, Irina A. Buhimschi, Joseph A. Jurcisek, Taryn Summerfield, Guomao Zhao, William E. Ackerman, Weiwei Wang, R. Wolfgang Rumpf, Stephen Thung, Lauren O. Bakaletz, Catalin S. Buhimschi
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-27925-w
Application of Whole Genome Resequencing in Mapping of a Tomato Yellow Leaf Curl Virus Resistance Gene
Cited by: 16
Author(s): Yinlei Wang, Jing Jiang, Liping Zhao, Rong Zhou, Wenbao Yu, Tongmin Zhao
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-29526-z
Characterization of the APETALA2/Ethylene-responsive factor (AP2/ERF) transcription factor family in sunflower
Cited by: 46
Author(s): S. Iraj Najafi, Karim Sorkheh, Fatemeh Nasernakhaei
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-32513-z
Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice
Cited by: 23
Author(s): Chao Chai, Rama Shankar, Mukesh Jain, Prasanta K. Subudhi
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-32626-5
Genome-wide identification and expression analyses of TCP transcription factor genes in Gossypium barbadense
Cited by: 33
Author(s): Kai Zheng, Zhongfu Ni, Yanying Qu, Yongsheng Cai, Zhaoen Yang, Guixin Sun, Quanjia Chen
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-34448-x
Genome-wide Identification, Classification, and Expression Pattern of Homeobox Gene Family in Brassica rapa under Various Stresses
Cited by: 26
Author(s): Nadeem Khan, Chunmei Hu, Waleed Amjad Khan, Wenli Wang, Koeun Han, Hansong Dong, Zhishuo Zhang, Xilin Hou
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-34559-5
N6-Methyladenine DNA modification in Xanthomonas oryzae pv. oryzicola genome
Cited by: 7
Author(s): Chuan-Le Xiao, Shuang Xie, Qingbiao Xie, Zhaoyu Liu, Jian-Feng Xing, Kai-Kai Ji, Jun Tao, Liangying Dai, Feng Luo
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-35583-1
A high-density genetic linkage map and QTL mapping for growth and sex of yellow drum (Nibea albiflora)
Cited by: 30
Author(s): Changliang Qiu, Zhaofang Han, Wanbo Li, Kun Ye, Yangjie Xie, Zhiyong Wang
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-38450-1
Computational screening of medicinal plant phytochemicals to discover potent pan-serotype inhibitors against dengue virus
Cited by: 90
Author(s): Muhammad Tahir ul Qamar, Arooma Maryam, Iqra Muneer, Xing Feng, Usman Ali Ashfaq, Faheem Ahmed Khan, Farooq Anwar, Mohammed H. Geesi, Rana Rehan Khalid, Sadaf Abdul Rauf, Abdul Rauf Siddiqi
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-39391-z
Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans
Cited by: 12
Author(s): Elena A. Vidal, Tomás C. Moyano, Bernabé I. Bustos, Eduardo Pérez‐Palma, Carol Moraga, Eleodoro Riveras, Alejandro Montecinos, Lorena Azócar, Daniela C. Soto, Mabel Vidal, Alex Di Génova, Klaus Püschel, Peter Nürnberg, Stephan Buch, Miguel L. Allende, Verónica Cambiazo, Maurício González, Christian Hödar, Martín Montecino, Claudia Muñoz-Espinoza, Ariel Orellana, Angélica Reyes-Jara, Dante Travisany, Paula Vizoso, Mauricio Moraga, S. Eyheramendy, Alejandro Maass, Giancarlo Ferrari, Juan Francisco Miquel, Rodrigo A. Gutiérrez
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-018-37905-9
Revealing the Hippocampal Connectome through Super-Resolution 1150-Direction Diffusion MRI
Cited by: 70
Author(s): Jerome Joseph Maller, Thomas Welton, Matthew J. Middione, Fraser M. Callaghan, Jeffrey V. Rosenfeld, Stuart M. Grieve
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-39161-x
Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide
Cited by: 44
Author(s): Chao‐Nan Fu, Ching‐Yi Wu, Lin-Jiang Ye, Zhi-Qiong Mo, Jie Liu, Youngho Chang, Li D, Shu‐Miaw Chaw, Lian‐Ming Gao
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-41484-8
A fruit firmness QTL identified on linkage group 4 in sweet cherry (Prunus avium L.) is associated with domesticated and bred germplasm
Cited by: 24
Author(s): Lichun Cai, José Quero-García, Teresa Barreneche, Elisabeth Dirlewanger, Christopher Saski, Amy Iezzoni
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-42428-y
The development of a high-density genetic map significantly improves the quality of reference genome assemblies for rose
Cited by: 14
Author(s): Shubin Li, Guoqian Yang, Shuhua Yang, Jérémy Just, Huijun Yan, Ningning Zhou, Hongying Jian, Qigang Wang, Min Chen, Xianqin Qiu, Hao Zhang, Xue Dong, Xiaoling Jiang, Yibo Sun, Mingyu Zhong, Mohammed Bendahmane, Guogui Ning, Hong Ge, Jin‐Yong Hu, Kaixue Tang
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-42572-5
Genome analysis of Paenibacillus polymyxa A18 gives insights into the features associated with its adaptation to the termite gut environment
Cited by: 16
Author(s): Nandita Pasari, Manish Gupta, Danish Eqbal, Syed Shams Yazdani
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-44856-2
QTL-seq identifies cooked grain elongation QTLs near soluble starch synthase and starch branching enzymes in rice (Oryza sativa L.)
Cited by: 39
Author(s): Siwaret Arikit, Samart Wanchana, Srisawat Khanthong, Chatree Saensuk, Tripop Thianthavon, Apichart Vanavichit, Theerayut Toojinda
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-45454-y
Genome-wide analysis of genetic variations between dominant and recessive NILs of glanded and glandless cottons
Cited by: 5
Author(s): Tianlun Zhao, Cheng Li, Cong Liu, Fan Zhang, Lei Mei, Elmon Chindudzi, Jinhong Chen, Shuijin Zhu
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-45511-6
Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater
Cited by: 21
Author(s): Tian Wu, Linzhou Li, Xiaoying Jiang, Yong Yang, Yanzi Song, Liang Chen, Xun Xu, Yue Shen, Ying Gu
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-48239-5
Construction of a high density linkage map and genome dissection of bruchid resistance in zombi pea (Vigna vexillata (L.) A. Rich)
Cited by: 9
Author(s): Kitiya Amkul, Lixia Wang, Prakit Somta, Suhua Wang, Xuzhen Cheng
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-48492-8
Application of a high-resolution genetic map for chromosome-scale genome assembly and fine QTLs mapping of seed size and weight traits in castor bean
Cited by: 14
Author(s): Anmin Yu, Fĕi Li, Wei Xu, Zaiqing Wang, Chao Sun, Bing Han, Yue Wang, Bo Wang, Xuejiao Cheng, Aizhong Liu
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-49496-0
Genome wide transcriptome analysis reveals vital role of heat responsive genes in regulatory mechanisms of lentil (Lens culinaris Medikus)
Cited by: 45
Author(s): Dharmendra Singh, Chandan Kumar Singh, Jyoti Taunk, Vasudha Jadon, Madan Pal, Kishor Gaikwad
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-52362-8
Cannabidiol Regulates Gene Expression in Encephalitogenic T cells Using Histone Methylation and noncoding RNA during Experimental Autoimmune Encephalomyelitis
Cited by: 13
Author(s): Xiaoming Yang, Marpe Bam, Prakash Nagarkatti
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-54759-x
Culture of Methanogenic Archaea from Human Colostrum and Milk
Cited by: 38
Author(s): Amadou Hamidou Togo, Ghiles Grine, Saber Khelaifia, C. Robert, Véronique Brévaut, Aurélia Caputo, Emeline Baptiste, M Bonnet, Anthony Levasseur, Michel Drancourt, Matthieu Million, Didier Raoult
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-57942-7
Analysis of Copy-Number Variations and Feline Mammary Carcinoma Survival
Cited by: 8
Author(s): José Luis Granados-Soler, Kirsten Bornemann-Kolatzki, Julia Beck, Bertram Brenig, Ekkehard Schütz, Daniela Simon Betz, Johannes Junginger, M. Hewicker‐Trautwein, Hugo Murua Escobar, Ingo Nolte
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-58271-5
Genome-wide SNP identification in Prunus rootstocks germplasm collections using Genotyping-by-Sequencing: phylogenetic analysis, distribution of SNPs and prediction of their effect on gene function
Cited by: 20
Author(s): Verónica Guajardo, Simón Solís, Rubén Almada, Christopher Saski, Ksenija Gašić, María Ángeles Moreno Sánchez
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-62836-9
Vermamoeba vermiformis CDC-19 draft genome sequence reveals considerable gene trafficking including with candidate phyla radiation and giant viruses
Cited by: 18
Author(s): Nisrine Chelkha, Issam Hasni, Amina Cherif Louazani, Anthony Levasseur, Bernard La Scola, Philippe Colson
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-63987-5
Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing
Cited by: 11
Author(s): Marie‐Alice Fraiture, Bert Bogaerts, Raf Winand, Marie Deckers, Nina Papazova, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy Roosens
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-64746-2
Genome-wide Identification and Characterization of Heat Shock Protein Family Reveals Role in Development and Stress Conditions in Triticum aestivum L.
Cited by: 38
Author(s): Ashish Kumar, Saloni Sharma, Venkatesh Chunduri, Amandeep Kaur, Satinder Kaur, Nikhil Malhotra, Aman Kumar, Payal Kapoor, Anita Kumari, Jaspreet Kaur, Humira Sonah, Monika Garg
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-65001-4
Genome-wide Analysis of Four Enterobacter cloacae complex type strains: Insights into Virulence and Niche Adaptation
Cited by: 13
Author(s): Areeqa Mustafa, Muhammad Ibrahim, Muhammad Rasheed, Sumaira Kanwal, Annam Hussain, Asma Sami, Ahmed Raza, Bao‐Ku Zhu
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-65228-1
Genome Comparison Identifies Different Bacillus Species in a Bast Fibre-Retting Bacterial Consortium and Provides Insights into Pectin Degrading Genes
Cited by: 20
Author(s): Subhojit Datta, Dipnarayan Saha, Lipi Chattopadhyay, B. Majumdar
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-67957-9
Genome-wide identification, and characterization of the CDPK gene family reveal their involvement in abiotic stress response in Fragaria x ananassa
Cited by: 31
Author(s): Rosane Lopes Crizel, Ellen Cristina Perin, Isabel Lopes Vighi, Rafael Woloski, Amilton Seixas, Luciano da Silva Pinto, César Valmor Rombaldi, Vanessa Galli
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-70061-7
Genome-wide identification and characterization of DCL, AGO and RDR gene families in Saccharum spontaneum
Cited by: 17
Author(s): Dongli Cui, Jian‐Yu Meng, Xiaoyan Ren, Jingjing Yue, Hua‐Ying Fu, Mei-Ting Huang, Qingqi Zhang, San‐Ji Gao
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-69944-6
Characterization of a SPM-1 metallo-beta-lactamase-producing Pseudomonas aeruginosa by comparative genomics and phenotypic analysis
Cited by: 7
Author(s): Ana Paula Barbosa do Nascimento, Fernando Medeiros Filho, Heidi Pauer, L. Caetano M. Antunes, Hério Sousa, Hermes Senger, Rodolpho Mattos Albano, M. Tadeu dos Santos, Ana Paula D’Alincourt Carvalho-Assef, Fabrício Silva
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-70404-4
A novel strain of acetic acid bacteria Gluconobacter oxydans FBFS97 involved in riboflavin production
Cited by: 13
Author(s): Abeer Essam Noman, Naif S. Al-Barha, Abdul-Aziz M. Sharaf, Qais Ali Al‐Maqtari, Amani Mohedein, Hammad Hamed Hammad Mohammed, Fusheng Chen
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-70634-6
Comparative analysis, distribution, and characterization of microsatellites in Orf virus genome
Cited by: 5
Author(s): Basanta Pravas Sahu, Prativa Majee, Rajinder Singh, Anjan Kumar Sahoo, Debasis Nayak
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-75751-w
Intestinal miRNAs regulated in response to dietary lipids
Cited by: 11
Author(s): Judit Gil-Zamorano, João Tomé‐Carneiro, María-Carmen López de Las Hazas, Lorena Del Pozo-Acebo, M. Carmen Crespo, Diego Gómez-Coronado, Luis A Chapado, Emílio Herrera, María-Jesús Latasa, María Belén Ruiz-Roso, Mónica Castro-Camarero, Olivier Briand, Alberto Dávalos
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-77492-2
Genome skimming and exploration of DNA barcodes for Taiwan endemic cypresses
Cited by: 2
Author(s): Ching‐Yi Wu, Edi Sudianto, Yu-Mei Hung, Bo-Cyun Wang, Chin‐Cheng Huang, Chi-Tsong Chen, Shu‐Miaw Chaw
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-82584-8
Metagenomic analysis of the gut microbiome composition associated with vitamin D supplementation in Taiwanese infants
Cited by: 12
Author(s): Wei‐Te Lei, Kai-Yao Huang, Jhih-Hua Jhong, Chia-Hung Chen, Shun-Long Weng
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-80627-0
Analysis of Fox genes in Schmidtea mediterranea reveals new families and a conserved role of Smed-foxO in controlling cell death
Cited by: 9
Author(s): Eudald Pascual-Carreras, Carlos Herrera-Úbeda, Maria Rosselló, Pablo Coronel-Córdoba, Jordi Garcia‐Fernàndez, Emili Saló, Teresa Adell
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-82857-2
In silico identification of natural products from Traditional Chinese Medicine for cancer immunotherapy
Cited by: 13
Author(s): Chuipu Cai, Qihui Wu, Honghai Hong, Lin He, Zhihong Liu, Yong Gu, Shijie Zhang, Qi Wang, Xiude Fan, Jiansong Fang
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-84286-7
Complete genome sequencing of Bacillus sp. TK-2, analysis of its cold evolution adaptability
Cited by: 9
Author(s): Lijun Shen, Xueli Zang, Ke Sun, Huan Chen, Xinying Che, Yansong Sun, Gang Wang, Sitong Zhang, Guang Chen
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-84778-6
Structural characterization and duplication modes of pseudogenes in plants
Cited by: 11
Author(s): Flavia Mascagni, Gabriele Usai, Andrea Cavallini, Andrea Porceddu
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-85754-w
Genome-wide characterization and analysis of bHLH transcription factors related to anthocyanin biosynthesis in spine grapes (Vitis davidii)
Cited by: 24
Author(s): Ming Li, Lina Sun, Hongcang Gu, Dawei Cheng, Xiaoxia Guo, Rui Chen, Zhiyong Wu, Jianfu Jiang, Xiucai Fan, Jinyong Chen
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-86838-3
Genome-wide discovery of G-quadruplexes in barley
Cited by: 14
Author(s): H Busra Cagirici, Hikmet Budak, Taner Z. Sen
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-87722-w
Comprehensive molecular dissection of TIFY Transcription factors reveal their dynamic responses to biotic and abiotic stress in wheat (Triticum aestivum L.)
Cited by: 14
Author(s): Poonam Singh, Kunal Mukhopadhyay
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-89900-2
The climatic and genetic heritage of Italian goat breeds with genomic SNP data
Cited by: 18
Author(s): Matteo Cortellari, Mario Barbato, Andrea Talenti, Arianna Bionda, Antonello Carta, Roberta Ciampolini, Elena Ciani, Alessandra Crisà, S. Frattini, Emiliano Lasagna, Donata Marletta, Salvatore Mastrangelo, Alessio Negro, Ettore Randi, Francesca Maria Sarti, Stefano Sartore, Dominga Soglia, Luigi Liotta, Alessandra Stella, Paolo Ajmone‐Marsan, Fabio Pilla, Licia Colli, P. Crepaldi
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-92425-3
Genome-scale comparative analysis for host resistance against sea lice between Atlantic salmon and rainbow trout
Cited by: 6
Author(s): Pablo Cáceres, Agustín Barría, Kris A. Christensen, Liane N. Bassini, Katharina Correa, Baltasar F. García, Jean Paul Lhorente, José M. Yáñez
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-93481-5
The mitochondrial genome of the grape powdery mildew pathogen Erysiphe necator is intron rich and exhibits a distinct gene organization
Cited by: 5
Author(s): Alex Z. Zaccaron, Jorge Teodoro de Souza, Ioannis Stergiopoulos
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-94109-4
Dynamic differential evolution schemes of WRKY transcription factors in domesticated and wild rice
Cited by: 3
Author(s): Anne J. Villacastin, Keeley S. Adams, Rin Boonjue, Paul J. Rushton, Mira V. Han, Jeffery Q. Shen
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-95899-3
Genome-wide identification and analysis of the heat shock transcription factor family in moso bamboo (Phyllostachys edulis)
Cited by: 18
Author(s): Bin Huang, Zhinuo Huang, Ruifang Ma, Jialu Chen, Zhijun Zhang, Kim Yrjälä
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-96133-w
Comparative genome analysis of Bacillus thuringiensis strain HD521 and HS18-1
Cited by: 2
Author(s): Hongwei Sun, Xiang Xiao, Qiao Li, Hui Lin, Xiaolin Wang, Jie Sun, Luo Lu, Aiping Zheng
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-97764-9
Deciphering complex genome rearrangements in C. elegans using short-read whole genome sequencing
Cited by: 8
Author(s): Tatiana Maroilley, Xiao Li, Matthew Oldach, Francesca Jean, Susan Stasiuk, Maja Tarailo‐Graovac
Software Mentions: 1
Published: about 3 years ago
10.1038/s41598-021-97691-9
Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
Cited by: 6
Author(s): Md. Sifatul Islam, Md. Soyib Hasan, Md. Nazmul Hasan, Shamsul H. Prodhan, Tahmina Islam, Ajit Ghosh
Software Mentions: 1
Published: about 3 years ago
10.1155/2014/569324
VibrioBase: A Model for Next-Generation Genome and Annotation Database Development
Cited by: 4
Author(s): Siew Woh Choo, Hamed Heydari, Tze King Tan, Cheuk Chuen Siow, Ching Yew Beh, Wei Yee Wee, Naresh V.R. Mutha, George T.F. Wong, Mia Yang Ang, Amir Hessam Yazdi
Software Mentions: 1
Published: almost 11 years ago
10.1186/s40064-016-2647-x
Genome-wide identification of soybean WRKY transcription factors in response to salt stress
Cited by: 60
Author(s): Yanchong Yu, Nan Wang, Ruibo Hu, Fengning Xiang
Software Mentions: 1
Published: over 8 years ago
10.4056/sigs.28177
GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes
Cited by: 8
Author(s): Peter F. Hallin, Hans‐Henrik Stærfeldt, Eva Rotenberg, Tim T. Binnewies, Craig J. Benham, David W. Ussery
Software Mentions: 1
Published: about 15 years ago
10.1186/s40793-015-0106-x
Complete genome of Pseudomonas chlororaphis strain UFB2, a soil bacterium with antibacterial activity against bacterial canker pathogen of tomato
Cited by: 23
Author(s): Peng Deng, Xiaoqiang Wang, Sonya M. Baird, Shi‐En Lu
Software Mentions: 1
Published: almost 9 years ago
10.1186/s40793-016-0130-5
Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing
Cited by: 15
Author(s): Jun‐Yi Zhang, Rui Guan, Hu-Jun Zhang, Hua Li, Peng Xiao, Ge Yu, Lei Du, De-Min Cao, Bo Zhu, Renhui Li, Lu Zhang
Software Mentions: 1
Published: almost 9 years ago
10.1186/s40793-016-0137-y
Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site
Cited by: 15
Author(s): Juliane Wissuwa, Runar Stokke, Anita-Elin Fedøy, Kjersti Lian, Arne O. Smalås, Ida Helene Steen
Software Mentions: 1
Published: over 8 years ago
10.1186/s40793-016-0198-y
A draft genome sequence of Pseudomonas veronii R4: a grapevine (Vitis vinifera L.) root-associated strain with high biocontrol potential
Cited by: 11
Author(s): Christian Montes, Fabiola Altimira, Hayron Canchignia, Álvaro Castro, Evelyn Aparecida Mecenero Sanchez, María Miccono, Eduardo Tapia, Álvaro Sequeida, Jorge Hernández Valdés, Paz Tapia, Carolina González, Humberto Prieto
Software Mentions: 1
Published: about 8 years ago
10.3390/ijms19113526
Genome-Wide Investigation of the Auxin Response Factor Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
Cited by: 49
Author(s): Moyang Liu, Zhaotang Ma, Anhu Wang, Tianrun Zheng, Li Huang, Wenjun Sun, Yanjun Zhang, Weiqiong Jin, Junyi Zhan, Yuntao Cai, Yang Tang, Qi Wu, Zizhong Tang, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms19113338
Genome-Wide Identification and Characterization of Pectin Methylesterase Inhibitor Genes in Brassica oleracea
Cited by: 8
Author(s): Tingting Liu, Hui Yu, Xingpeng Xiong, Youjian Yu, Xiumei Yue, Jinlong Liu, Jiashu Cao
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms20051107
Comprehensive Analysis of Differentially Expressed mRNA, lncRNA and circRNA and Their ceRNA Networks in the Longissimus Dorsi Muscle of Two Different Pig Breeds
Cited by: 71
Author(s): Jing Wang, Qiaoling Ren, Liushuai Hua, Junfeng Chen, Jiaqing Zhang, Hongjie Bai, Haili Li, Bin Xu, Zhihai Shi, Hai Xia Cao, Baosong Xing, Bai X
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms20061395
Identification and Expression Profiling of Protein Phosphatases (PP2C) Gene Family in Gossypium hirsutum L.
Cited by: 29
Author(s): Hamna Shazadee, Nadeem Khan, Jingjing Wang, Chencan Wang, Jianguo Zeng, Zhongyi Huang, Xinyu Wang
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms20061425
Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress
Cited by: 18
Author(s): Dongli Wang, Sen Meng, Wanlong Su, Yu Bao, Yingying Lǚ, Weilun Yin, Chao Liu, Xinli Xia
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms20081916
PMN-MDSCs Enhance CTC Metastatic Properties through Reciprocal Interactions via ROS/Notch/Nodal Signaling
Cited by: 96
Author(s): Marc L. Sprouse, Thomas Welte, Debasish Boral, Haowen N. Liu, Wei Yin, Monika Vishnoi, Debalina Goswami-Sewell, Lili Li, Guangsheng Pei, Peilin Jia, Isabella Glitza-Oliva, Dario Marchetti
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms20112730
The Class III Peroxidase (POD) Gene Family in Cassava: Identification, Phylogeny, Duplication, and Expression
Cited by: 27
Author(s): Chunlai Wu, Xuezhi Ding, Zehong Ding, Weiwei Tie, Yan Yan, Yu Wang, Hai Yang, Wei Hu
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms20112771
Transcriptome Profile Analysis of Winter Rapeseed (Brassica napus L.) in Response to Freezing Stress, Reveal Potentially Connected Events to Freezing Stress
Cited by: 38
Author(s): Yuanyuan Pu, Lijun Liu, Junyan Wu, Yang Zhao, Jing Bai, Lan Ma, Jinli Yue, Jiaojiao Jin, Zaoxia Niu, Yan Fang, Weizheng Sun
Software Mentions: 1
Published: over 5 years ago