10.3389/fgene.2021.732812

Genome-Wide Analysis of the HSP20 Gene Family and Expression Patterns of HSP20 Genes in Response to Abiotic Stresses in Cynodon transvaalensis
Cited by: 11
Author(s): Fengchao Cui, Geli Taier, Xiangfeng Wang, Kehua Wang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-01857-3

Massive expansion and differential evolution of small heat shock proteins with wheat (Triticum aestivum L.) polyploidization
Cited by: 14
Author(s): Xiaoming Wang, Ruochen Wang, Chuang Ma, Song Xue, Zhenshan Liu, Zhonghua Wang, Qixin Sun, Jun Cao, Shengbao Xu
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2020.00729

Characteristics and Mutational Hotspots of Plastomes in Debregeasia (Urticaceae)
Cited by: 15
Author(s): Ruonan Wang, Richard I. Milne, Xin Du, Jie Liu, Zeng-Yuan Wu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-017-03330-7

Genome-wide mapping and characterization of microsatellites in the swamp eel genome
Cited by: 22
Author(s): Zhigang Li, Feng Chen, Chunhua Huang, Weiran Zheng, Chunlai Yu, Hanhua Cheng, Rongjia Zhou
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.10778

Genomic complexity and dynamics of clonal evolution in childhood acute myeloid leukemia studied with whole-exome sequencing
Cited by: 22
Author(s): Riccardo Masetti, Ilaria Castelli, Annalisa Astolfi, Salvatore Nicola Bertuccio, Valentina Indio, Marco Togni, Tamara Belotti, Salvatore Serravalle, Giuseppe Tarantino, Marco Zecca, Martina Pigazzi, Giuseppe Basso, Andrea Pession, Franco Locatelli
Software Mentions: 1
Published: about 10 years ago

10.3389/fgene.2019.01288

N6-Methyladenine DNA Modification in the Woodland Strawberry (Fragaria vesca) Genome Reveals a Positive Relationship With Gene Transcription
Cited by: 12
Author(s): Shuang Xie, Jian-Feng Xing, Xiaoming Zhang, Zhaoyu Liu, Meiwei Luan, Jie Zhu, Ling Peng, Chuan-Le Xiao, Xiqiang Song, Jun Zheng, Ying Chen
Software Mentions: 1
Published: over 6 years ago

10.3390/cells7070077

Comparative and Expression Analysis of Ubiquitin Conjugating Domain-Containing Genes in Two Pyrus Species
Cited by: 13
Author(s): Yunpeng Cao, Dong Meng, Yu Chen, Muhammad Abdullah, Qing Jin, Yi Lin, Yongping Cai
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-04004-0

Genome-wide identification and characterization of genes involved in carotenoid metabolic in three stages of grapevine fruit development
Cited by: 35
Author(s): Xiangpeng Leng, Peipei Wang, Chen Wang, Xudong Zhu, Xiaopeng Li, Hongyan Li, Qian Mei, Ao Li, Zhongjie Liu, Jinggui Fang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-04833-z

Mitogenomic analyses support the recent division of the genus Orthotrichum (Orthotrichaceae, Bryophyta)
Cited by: 30
Author(s): Jakub Sawicki, Vítězslav Plášek, Ryszard Ochyra, Monika Szczecińska, Monika Ślipiko, Kamil Myszczyński, Tomasz Kulik
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.13642

New differentially expressed genes and differential DNA methylation underlying refractory epilepsy
Cited by: 31
Author(s): Xi Liu, Shu Ou, Tao Xu, Shiyong Liu, Jinxian Yuan, Hao Huang, Qiong Lu, Hui Yang, Lifen Chen, Xu Tan, Yangmei Chen
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41598-017-06160-9

Comparative genomic analysis of Paenibacillus sp. SSG-1 and its closely related strains reveals the effect of glycometabolism on environmental adaptation
Cited by: 8
Author(s): Hui Xu, Siyu Qin, Yanhong Lan, Mengjia Liu, Xiyue Cao, Dan Qiao, Yu Cao, Yi Cao
Software Mentions: 1
Published: about 9 years ago

10.3389/fgene.2014.00163

Evolution of genomic structural variation and genomic architecture in the adaptive radiations of African cichlid fishes
Cited by: 22
Author(s): Shaohua Fan, Axel Meyer
Software Mentions: 1
Published: over 12 years ago

10.3389/fgene.2020.550677

Identification and Expression Analysis of the CsMYB Gene Family in Root Knot Nematode-Resistant and Susceptible Cucumbers
Cited by: 9
Author(s): Chunyan Cheng, Qingrong Li, Xing Wang, Ying Li, Chuntao Qian, Ji Li, Qunfeng Lou, Molly M. Jahn, Jinfeng Chen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12967-020-02480-z

The current landscape of coronavirus-host protein–protein interactions
Cited by: 62
Author(s): Laure Perrin-Cocon, Olivier Diaz, Clémence Jacquemin, Valentine Barthel, Eva Ogire, Christophe Ramière, Patrice André, Vincent Lotteau, Pierre‐Olivier Vidalain
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.15043

Whole-genome sequencing identifies new genetic alterations in meningiomas
Cited by: 16
Author(s): Ming Tang, Wei Heng, Lu Han, Jiaojiao Deng, Yuelong Wang, Meng Yang, YH Tang, Gang Guo, Liangxue Zhou, Aiping Tong
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-09397-6

Transcriptomic, biochemical and physio-anatomical investigations shed more light on responses to drought stress in two contrasting sesame genotypes
Cited by: 56
Author(s): Komivi Dossa, Donghua Li, Linhai Wang, Xiaomin Zheng, Aili Liu, Jingyin Yu, Xin Wei, Rong Zhou, Daniel Foncéka, Diaga Diouf, Boshou Liao, Ndiaga Cissé
Software Mentions: 1
Published: about 9 years ago

10.3389/fncom.2017.00037

Examining Brain Morphometry Associated with Self-Esteem in Young Adults Using Multilevel-ROI-Features-Based Classification Method
Cited by: 2
Author(s): Bo Peng, Jieru Lu, Aditya Saxena, Zhengxin Zhou, Tao Zhang, Suhong Wang, Yakang Dai
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-10432-9

Mutational heterogeneity in non-serous ovarian cancers
Cited by: 35
Author(s): Jamie K. Teer, Sean Yoder, Anxhela Gjyshi, Santo V. Nicosia, Chaomei Zhang, Alvaro N.A. Monteiro
Software Mentions: 1
Published: about 9 years ago

10.3389/fcimb.2018.00373

pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System
Cited by: 8
Author(s): Agnieszka Wróbel, Claudio Ottoni, Jack C. Leo, Dirk Linke
Software Mentions: 1
Published: almost 8 years ago

10.3389/fcimb.2019.00370

Characterization of the Genome Feature and Toxic Capacity of a Bacillus wiedmannii Isolate From the Hydrothermal Field in Okinawa Trough
Cited by: 11
Author(s): Yan Zhao, Chen Chen, Hanjie Gu, Jian Zhang, Li Sun
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2019.00183

A First Study of the Virulence Potential of a Bacillus subtilis Isolate From Deep-Sea Hydrothermal Vent
Cited by: 32
Author(s): Hanjie Gu, Qinglei Sun, Jing-Chang Luo, Jian Zhang, Li Sun
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-12988-y

Genome-wide identification and expression analyses of the homeobox transcription factor family during ovule development in seedless and seeded grapes
Cited by: 22
Author(s): Yunduan Li, Yanxun Zhu, Jin Yao, Songlin Zhang, Li Wang, Chunfang Guo, Steve van Nocker, Xiping Wang
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-13216-3

A high-density linkage map and QTL mapping of fruit-related traits in pumpkin (Cucurbita moschata Duch.)
Cited by: 31
Author(s): Yang Zhong, Yalin Zhou, Junxing Li, Ting Yu, Tianbin Wu, Jianxun Luo, Shuhong Luo, Hexun Huang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12301-x

Global trade statistics lack granularity to inform traceability and management of diverse and high-value fishes
Cited by: 28
Author(s): Donna‐Mareè Cawthorn, Stefano Mariani
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12970-8

Quantifying the relative immune cell activation from whole tissue/organ-derived differentially expressed gene data
Cited by: 5
Author(s): Edward Wijaya, Yoshinobu Igarashi, Noriyuki Nakatsu, Yasunari Haseda, Joël Billaud, Yi‐An Chen, Kenji Mizuguchi, Hiroshi Yamada, Ken J. Ishii, Taiki Aoshi
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-12901-7

Improving membrane protein expression and function using genomic edits
Cited by: 27
Author(s): Heather M. Jensen, Thomas Eng, Victor Chubukov, Robin A. Herbert, Aindrila Mukhopadhyay
Software Mentions: 1
Published: almost 9 years ago

10.1038/s42003-020-1105-z

Transcriptome-wide association study for restless legs syndrome identifies new susceptibility genes
Cited by: 9
Author(s): Fulya Akçimen, Faezeh Sarayloo, Calwing Liao, Jay P. Ross, Rachel De Barros Oliveira, Patrick A. Dion, Guy A. Rouleau
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2021.629116

Characterization of a Deep Sea Bacillus toyonensis Isolate: Genomic and Pathogenic Features
Cited by: 11
Author(s): Jing-Chang Luo, Heng Long, Jian Zhang, Yan Zhao, Li Sun
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-13808-z

Insertion sequence polymorphism and genomic rearrangements uncover hidden Wolbachia diversity in Drosophila suzukii and D. subpulchrella
Cited by: 13
Author(s): Rupinder Kaur, Stefanos Siozios, Wolfgang J. Miller, Omar Rota‐Stabelli
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-017-15169-z

The first draft reference genome of the American mink (Neovison vison)
Cited by: 15
Author(s): Zexi Cai, Bent Petersen, Goutam Sahana, Lone Bruhn Madsen, Knud Larsen, Bo Thomsen, Christian Berthou, Mogens Sandø Lund, Bernt Guldbrandtsen, Frank Panitz
Software Mentions: 1
Published: almost 9 years ago

10.3389/fcell.2021.670145

The Inhibition of B7H3 by 2-HG Accumulation Is Associated With Downregulation of VEGFA in IDH Mutated Gliomas
Cited by: 3
Author(s): Mengli Zhang, Huaichao Zhang, Minjie Fu, Jingwen Zhang, Cheng Zhang, Yingying Lv, Fengfeng Fan, Jinsen Zhang, Hao Xu, Dan Ye, Hui Yang, Wei Hua, Ying Mao
Software Mentions: 1
Published: over 5 years ago

10.3389/fnagi.2021.706765

Identification of Gut Microbiome Signatures in Patients With Post-stroke Cognitive Impairment and Affective Disorder
Cited by: 10
Author(s): Yinting Huang, Zibin Shen, Wenzhen He
Software Mentions: 1
Published: about 5 years ago

10.3390/foods10081701

Codesign of Food System and Circular Economy Approaches for the Development of Livestock Feeds from Insect Larvae
Cited by: 20
Author(s): Sandeep Jagtap, Guillermo García-García, Linh Duong, Mark Swainson, Wayne Martindale
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.15428

Whole genome sequencing of matched tumor, adjacent non-tumor tissues and corresponding normal blood samples of hepatocellular carcinoma patients revealed dynamic changes of the mutations profiles during hepatocarcinogenesis
Cited by: 8
Author(s): Rong Mao, Jie Liu, Guanfeng Liu, Shanshan Jin, Quan Xue, Liang Ma, Yan Fu, Na Zhao, Jinliang Xing, Lanjuan Li, Yunqing Qiu, Biaoyang Lin
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms19113526

Genome-Wide Investigation of the Auxin Response Factor Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
Cited by: 49
Author(s): Moyang Liu, Zhaotang Ma, Anhu Wang, Tianrun Zheng, Li Huang, Wenjun Sun, Yanjun Zhang, Weiqiong Jin, Junyi Zhan, Yuntao Cai, Yang Tang, Qi Wu, Zizhong Tang, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19113338

Genome-Wide Identification and Characterization of Pectin Methylesterase Inhibitor Genes in Brassica oleracea
Cited by: 8
Author(s): Tingting Liu, Hui Yu, Xingpeng Xiong, Youjian Yu, Xiumei Yue, Jinlong Liu, Jiashu Cao
Software Mentions: 1
Published: almost 8 years ago

10.1038/s42003-021-01747-5

RSPO4-CRISPR alleviates liver injury and restores gut microbiota in a rat model of liver fibrosis
Cited by: 13
Author(s): Linghua Yu, Linlin Wang, Xiaojun Wu, Huixing Yi
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20051107

Comprehensive Analysis of Differentially Expressed mRNA, lncRNA and circRNA and Their ceRNA Networks in the Longissimus Dorsi Muscle of Two Different Pig Breeds
Cited by: 71
Author(s): Jing Wang, Qiaoling Ren, Liushuai Hua, Junfeng Chen, Jiaqing Zhang, Hongjie Bai, Haili Li, Bin Xu, Zhihai Shi, Hai Xia Cao, Baosong Xing, Bai X
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20061395

Identification and Expression Profiling of Protein Phosphatases (PP2C) Gene Family in Gossypium hirsutum L.
Cited by: 29
Author(s): Hamna Shazadee, Nadeem Khan, Jingjing Wang, Chencan Wang, Jianguo Zeng, Zhongyi Huang, Xinyu Wang
Software Mentions: 1
Published: over 7 years ago

10.12688/f1000research.14383.1

Case Report: Exome sequencing reveals recurrent RETSAT mutations and a loss-of-function POLDIP2 mutation in a rare undifferentiated tongue sarcoma
Cited by: 9
Author(s): Jason Ying Kuen Chan, P.W.F. Poon, Yong Zhang, Cherrie W K Ng, Wen Piao, Meng Ma, Kevin Y. Yip, Amy B.W. Chan, Vivian Wai Yan Lui
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms20061425

Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress
Cited by: 18
Author(s): Dongli Wang, Sen Meng, Wanlong Su, Yu Bao, Yingying Lǚ, Weilun Yin, Chao Liu, Xinli Xia
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20081916

PMN-MDSCs Enhance CTC Metastatic Properties through Reciprocal Interactions via ROS/Notch/Nodal Signaling
Cited by: 96
Author(s): Marc L. Sprouse, Thomas Welte, Debasish Boral, Haowen N. Liu, Wei Yin, Monika Vishnoi, Debalina Goswami-Sewell, Lili Li, Guangsheng Pei, Peilin Jia, Isabella Glitza-Oliva, Dario Marchetti
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20112730

The Class III Peroxidase (POD) Gene Family in Cassava: Identification, Phylogeny, Duplication, and Expression
Cited by: 27
Author(s): Chunlai Wu, Xuezhi Ding, Zehong Ding, Weiwei Tie, Yan Yan, Yu Wang, Hai Yang, Wei Hu
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20112771

Transcriptome Profile Analysis of Winter Rapeseed (Brassica napus L.) in Response to Freezing Stress, Reveal Potentially Connected Events to Freezing Stress
Cited by: 38
Author(s): Yuanyuan Pu, Lijun Liu, Junyan Wu, Yang Zhao, Jing Bai, Lan Ma, Jinli Yue, Jiaojiao Jin, Zaoxia Niu, Yan Fang, Weizheng Sun
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20123053

Whole Genome Sequencing and Analysis of Chlorimuron-Ethyl Degrading Bacteria Klebsiella pneumoniae 2N3
Cited by: 7
Author(s): Cheng Zhang, Qingkai Hao, Zhengyi Zhang, Xianghui Zhang, Hongyu Pan, Jiahuan Zhang, Hao Zhang, Fengjie Sun
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20133180

Genome-Wide Identification and Expression Profiling of the Polygalacturonase (PG) and Pectin Methylesterase (PME) Genes in Grapevine (Vitis vinifera L.)
Cited by: 31
Author(s): Nadeem Khan, Fizza Fatima, Muhammad Salman Haider, Hamna Shazadee, Zhongjie Liu, Ting Zheng, Jinggui Fang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20174319

Identification and Functional Analysis of the CLAVATA3/EMBRYO SURROUNDING REGION (CLE) Gene Family in Wheat
Cited by: 15
Author(s): Zheng Li, Dan Liú, Yu Xia, Ziliang Li, Na Niu, Shen Ma, Junwei Wang, Yulong Song, Gaisheng Zhang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174103

Systematic Analysis of Differentially Expressed Maize ZmbZIP Genes between Drought and Rewatering Transcriptome Reveals bZIP Family Members Involved in Abiotic Stress Responses
Cited by: 22
Author(s): Liru Cao, LU Xin-shi, Pengyu Zhang, Guorui Wang, Wei Li, Tongchao Wang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174115

Identification and in Silico Characterization of GT Factors Involved in Phytohormone and Abiotic Stresses Responses in Brachypodium distachyon
Cited by: 0
Author(s): Feng Wen, Li Xu, Yuebin Xie, Liwen Liang, Ming Jia, Xinsheng Liu, Xiaozhu Wu
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20184553

Genomic Organization of the B3-Domain Transcription Factor Family in Grapevine (Vitis vinifera L.) and Expression during Seed Development in Seedless and Seeded Cultivars
Cited by: 28
Author(s): Bilal Ahmad, Songlin Zhang, Jin Yao, Mati Ur Rahman, Muhammad Hanif, Yanxun Zhu, Xiping Wang
Software Mentions: 1
Published: about 7 years ago

10.12688/f1000research.2-258.v1

C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison
Cited by: 28
Author(s): Ilya Minkin, Hoa Pham, Ekaterina V. Starostina, Nikolay Vyahhi, Son Pham
Software Mentions: 1
Published: almost 13 years ago

10.18632/oncotarget.16442

Circular RNA alterations are involved in resistance to avian leukosis virus subgroup-J-induced tumor formation in chickens
Cited by: 47
Author(s): Xinheng Zhang, Yongde Yan, Xiaoya Lei, Aijun Li, Huanmin Zhang, Zhenkai Dai, Xinjian Li, Weiguo Chen, Wencheng Lin, Feng Chen, Jingyun Ma, Qingmei Xie
Software Mentions: 1
Published: over 9 years ago

10.1111/eva.13062

Application of simultaneous selective pressures slows adaptation
Cited by: 0
Author(s): Lauren M.F. Merlo, Kathleen Sprouffske, Taylor C. Howard, Kristin L. Gardiner, Aleah F. Caulin, Steven M. Blum, Perry Evans, Antonio Bedalov, Paul D. Sniegowski, Carlo C. Maley
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.16781

Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes
Cited by: 21
Author(s): Madalene A. Earp, Raghavan Rama, Qian Li, Junqiang Dai, Stacey J. Winham, Julie M. Cunningham, Yanina Natanzon, Kimberly R. Kalli, Xiaonan Hou, S. John Weroha, Paul Haluska, Kate Lawrenson, Simon A. Gayther, Chen Wang, Ellen L. Goode, Brooke L. Fridley
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18362

Differentially expressed lncRNAs and miRNAs with associated ceRNA networks in aged mice with postoperative cognitive dysfunction
Cited by: 41
Author(s): Changwei Wei, Ting Luo, Sheng Zou, Xiujuan Zhou, Wenzhen Shen, Xiaolin Ji, Qi Li, Anshi Wu
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20235974

Genome-Wide Identification and Analysis of the NPR1-Like Gene Family in Bread Wheat and Its Relatives
Cited by: 13
Author(s): Xian Liu, Zhiguo Liu, Xinhui Niu, Qian Xu, Long Yang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20246167

Genome-Wide Identification and Expression Analysis of the Ascorbate Oxidase Gene Family in Gossypium hirsutum Reveals the Critical Role of GhAO1A in Delaying Dark-Induced Leaf Senescence
Cited by: 9
Author(s): Ze Ya Pan, Lihua Chen, Fei Wang, Wangyang Song, Aiping Cao, Shuangquan Xie, Xifeng Chen, Xiang Jin, Hongbin Li
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21010321

Histone Deacetylase (HDAC) Gene Family in Allotetraploid Cotton and Its Diploid Progenitors: In Silico Identification, Molecular Characterization, and Gene Expression Analysis under Multiple Abiotic Stresses, DNA Damage and Phytohormone Treatments
Cited by: 20
Author(s): Muhammad Imran, Sarfraz Shafiq, Muhammad Kashif Naeem, Émilie Widemann, Muhammad Zeeshan Munir, Kevin B. Jensen, Richard R.‐C. Wang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s42003-021-01689-y

Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt
Cited by: 22
Author(s): Simone Rampelli, Silvia Turroni, Carolina Mallol, Constantino Criado Hernández, Bertila Galván, Ainara Sistiaga, Elena Biagi, Annalisa Astolfi, Patrizia Brigidi, Stefano Benazzi, Cecil M. Lewis, Christina Warinner, Courtney A. Hofman, Stephanie L. Schnorr, Marco Candela
Software Mentions: 1
Published: over 5 years ago

10.1534/g3.117.041376

A High-Density Genetic Linkage Map and QTL Fine Mapping for Body Weight in Crucian Carp (<i>Carassius auratus</i>) Using 2b-RAD Sequencing
Cited by: 30
Author(s): Haiyang Liu, Bishi Fu, Maolin Pang, Xiu Feng, Xin Yu, Jingou Tong
Software Mentions: 1
Published: about 9 years ago

10.1534/g3.117.300243

Genome-Wide Analysis of DNA Methylation During Ovule Development of Female-Sterile Rice <i>fsv1</i>
Cited by: 12
Author(s): Helian Liu, Ya Fang Wu, Aqin Cao, Bigang Mao, Baisuo Zhao, Jianbo Wang
Software Mentions: 1
Published: almost 9 years ago

10.1534/g3.118.200232

Genome-Wide Analysis of Multidrug and Toxic Compound Extrusion (<i>MATE</i>) Family in <i>Gossypium raimondii</i> and <i>Gossypium arboreum</i> and Its Expression Analysis Under Salt, Cadmium, and Drought Stress
Cited by: 34
Author(s): Lei Pu, Richard Odongo Magwanga, Xuewu Guo, Joy Nyangasi Kirungu, Hejun Lu, Xiaoyan Cai, Zhongli Zhou, Yangyang Wei, Xingxing Wang, Zhenmei Zhang, Renhai Peng, Kunbo Wang, Fang Liu
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21020628

Placenta-Specific Genes, Their Regulation During Villous Trophoblast Differentiation and Dysregulation in Preterm Preeclampsia
Cited by: 24
Author(s): András Szilágyi, Zsolt Gelencser, Roberto Romero, Yi Xu, Péter Király, Attila Demeter, János Pálhalmi, Balázs Győrffy, Kata Juhász, Petronella Hupuczi, Katalin A. Kékesi, Gerold Meinhardt, Zoltán Papp, Sorin Drăghici, Offer Erez, Adi L. Tarca, Martin Knöfler, Nándor Gábor Than
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.118.200941

Genome-Wide Analysis of <i>Mycoplasma dispar</i> Provides Insights into Putative Virulence Factors and Phylogenetic Relationships
Cited by: 7
Author(s): Shengli Chen, Hiroyuki Hao, Xingcheng Yan, Yongsheng Liu, Yuefeng Chu
Software Mentions: 1
Published: over 7 years ago

10.1534/g3.116.028175

Comparative and Transcriptome Analyses Uncover Key Aspects of Coding- and Long Noncoding RNAs in Flatworm Mitochondrial Genomes
Cited by: 26
Author(s): E. J. Ross, David Blair, Carlos Guerrero‐Hernández, Alejandro Sánchez Alvarado
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms21020608

Genome-Wide Investigation of Heat Shock Transcription Factor Family in Wheat (Triticum aestivum L.) and Possible Roles in Anther Development
Cited by: 23
Author(s): Jiali Ye, Xiaohong R. Yang, Hu Gan, Qi Liu, Wei Li, Lingli Zhang, Xiyue Song
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400555

Comparison and Characterization of Mutations Induced by Gamma-Ray and Carbon-Ion Irradiation in Rice (<i>Oryza sativa</i>L.) Using Whole-Genome Resequencing
Cited by: 58
Author(s): Feng Li, Akifumi Shimizu, Takeshi Nishio, Nobuhiro Tsutsumi, Hiroshi Katô
Software Mentions: 1
Published: almost 7 years ago

10.1534/g3.119.400813

Type I-F CRISPR-Cas Distribution and Array Dynamics in <i>Legionella pneumophila</i>
Cited by: 9
Author(s): Shayna R. Deecker, Alexander W. Ensminger
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400929

A High-Quality Genome Assembly of the North American Song Sparrow, <i>Melospiza melodia</i>
Cited by: 6
Author(s): Swarnali Louha, David A. Ray, Kevin Winker, Travis C. Glenn
Software Mentions: 1
Published: over 6 years ago

10.1534/g3.119.400957

Assessing Diversity in the<i>Camelina</i>Genus Provides Insights into the Genome Structure of<i>Camelina sativa</i>
Cited by: 26
Author(s): R. C. Chaudhary, ChuShin Koh, Sateesh Kagale, Lily Tang, Siu Wah Wu, Zhenling Lv, Annaliese S. Mason, Andrew Sharpe, Axel Diederichsen, Isobel A. P. Parkin
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21020634

Genome-Wide Identification and Characterization of the NAC Transcription Factor Family in Musa Acuminata and Expression Analysis during Fruit Ripening
Cited by: 32
Author(s): Bin Li, Ruiyi Fan, Qiaosong Yang, Chunhua Hu, Ou Sheng, Guiming Deng, Tingting Dong, Chunyu Li, Xinxiang Peng, Fangcheng Bi, Ganjun Yi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41431-019-0343-3

Using dried blood spot samples from a trio for linked-read whole-exome sequencing
Cited by: 6
Author(s): Ólavur Mortensen, Leivur N. Lydersen, Katrin Didriksen Apol, Guðrið Andorsdóttir, Bjarni á Steig, Noomi Gregersen
Software Mentions: 1
Published: over 7 years ago

10.1534/g3.120.401446

“Mind the Gap”: Hi-C Technology Boosts Contiguity of the Globe Artichoke Genome in Low-Recombination Regions
Cited by: 11
Author(s): Alberto Acquadro, Ezio Portis, Danila Valentino, Lorenzo Barchi, Sergio Lanteri
Software Mentions: 1
Published: about 6 years ago

10.1534/g3.115.023432

Exploring a Nonmodel Teleost Genome Through RAD Sequencing—Linkage Mapping in Common Pandora, <i>Pagellus erythrinus</i> and Comparative Genomic Analysis
Cited by: 30
Author(s): Tereza Manousaki, Alexandros Tsakogiannis, John B. Taggart, Christos Palaiokostas, Dimitris Tsaparis, Jacques Lagnel, Dimitrios Chatziplis, Antoniοs Magoulas, Nikos Papandroulakis, Constantinos C. Mylonas, Costas S. Tsigenopoulos
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.120.401711

Draft Genome Assembly of the Freshwater Apex Predator Wels Catfish (<i>Silurus glanis</i>) Using Linked-Read Sequencing
Cited by: 6
Author(s): Mikhail Ozerov, Martin Flajšhans, Kristina Noreikienė, Anti Vasemägi, Riho Gross
Software Mentions: 1
Published: almost 6 years ago

10.1093/g3journal/jkab006

Reference genome assembly for Australian <i>Ascochyta lentis</i> isolate Al4
Cited by: 8
Author(s): Robert C. Lee, Lina M Farfan-Caceres, Johannes Wolfram Debler, Angela H. Williams, Robert A. Syme, Bernadette M. Henares
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21031000

Comprehensive Profiling of Tubby-Like Protein Expression Uncovers Ripening-Related TLP Genes in Tomato (Solanum lycopersicum)
Cited by: 15
Author(s): Yaoxin Zhang, Xiaoqing He, Dan Su, Feng Yuan, Haochen Zhao, Heng Deng, Mingchun Liu
Software Mentions: 1
Published: over 6 years ago

10.1093/g3journal/jkaa008

Genome sequence of the oyster mushroom <i>Pleurotus ostreatus</i> strain PC9
Cited by: 17
Author(s): Yi-Yun Lee, Guillermo Vidal-Diez de Ulzurrun, Erich M. Schwarz, Jason E. Stajich, Yu-Ting Hsueh
Software Mentions: 1
Published: almost 6 years ago

10.1534/g3.115.017772

Composite Selection Signals for Complex Traits Exemplified Through Bovine Stature Using Multibreed Cohorts of European and African <i>Bos taurus</i>
Cited by: 37
Author(s): Imtiaz A. S. Randhawa, Mehar S. Khatkar, Peter Thomson, Herman W. Raadsma
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms21041293

Characterization of the OFP Gene Family and its Putative Involvement of Tuberous Root Shape in Radish
Cited by: 8
Author(s): Yanping Wang, Qingbiao Wang, Hao Wu, Honghe Sun, Li Zhang
Software Mentions: 1
Published: over 6 years ago

10.1093/g3journal/jkab277

High-quality genome assembly of the soybean fungal pathogen <i>Cercospora kikuchii</i>
Cited by: 4
Author(s): Takeshi Kashiwa, Tomohiro Suzuki
Software Mentions: 1
Published: about 5 years ago

10.1534/g3.114.015438

A High-Density Linkage Map for <i>Astyanax mexicanus</i> Using Genotyping-by-Sequencing Technology
Cited by: 28
Author(s): Brian M. Carlson, Samuel W. Onusko, Joshua B. Gross
Software Mentions: 1
Published: over 11 years ago

10.3390/genes8040111

Genome-Wide Analysis of the Sucrose Synthase Gene Family in Grape (Vitis vinifera): Structure, Evolution, and Expression Profiles
Cited by: 49
Author(s): Xudong Zhu, Mengqi Wang, Xiaopeng Li, Songtao Jiu, Chen Wang, Jinggui Fang
Software Mentions: 1
Published: over 9 years ago

10.3390/genes8100261

Expression Profiling of Mitogen-Activated Protein Kinase Genes Reveals Their Evolutionary and Functional Diversity in Different Rubber Tree (Hevea brasiliensis) Cultivars
Cited by: 15
Author(s): Xiang Jin, Liping Zhu, Yanfei Qi, Xueru Meng, Guohua Ding, Dan Wang, Quanliang Xie, Tao Zheng, Chengcheng Tao, Li Yu, Hongbin Li, Xuchu Wang
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes8120362

Functional Characterization of the Versatile MYB Gene Family Uncovered Their Important Roles in Plant Development and Responses to Drought and Waterlogging in Sesame
Cited by: 57
Author(s): Marie Ali Mmadi, Komivi Dossa, Linhai Wang, Rong Zhou, Yanyan Wang, Ndiaga Cissé, Mame Ourèye Sy
Software Mentions: 1
Published: almost 9 years ago

10.3390/cells7090120

Identification and Characterization of LRR-RLK Family Genes in Potato Reveal Their Involvement in Peptide Signaling of Cell Fate Decisions and Biotic/Abiotic Stress Responses
Cited by: 28
Author(s): Xiaoxu Li, Saboor Ahmad, Chunfang Guo, Jing Yu, Songxiao Cao, Xiao‐Ming Gao, Wei Li, Hong Li, Yongfeng Guo
Software Mentions: 1
Published: about 8 years ago

10.1111/cpr.12862

High‐efficient generation of VCAM‐1⁺ mesenchymal stem cells with multidimensional superiorities in signatures and efficacy on aplastic anaemia mice
Cited by: 35
Author(s): Yimeng Wei, Leisheng Zhang, Ying Cheng, Xiang Ren, Yuchen Gao, Baoquan Song, Chengwen Li, Zhibo Han, Zhongchao Han
Software Mentions: 1
Published: over 6 years ago

10.1038/ejhg.2017.128

The Y chromosome: a blueprint for men’s health?
Cited by: 85
Author(s): Akhlaq Ahmed Maan, James Eales, Artur Akbarov, Joshua Rowland, Xiaoguang Xu, Mark A. Jobling, Fadi J. Charchar, Maciej Tomaszewski
Software Mentions: 1
Published: about 9 years ago

10.3390/genes9040224

Genome Wide Identification, Evolutionary, and Expression Analysis of VQ Genes from Two Pyrus Species
Cited by: 15
Author(s): Yunpeng Cao, Dong Meng, Qing Jin, Yi Lin, Yongping Cai
Software Mentions: 1
Published: over 8 years ago

10.3390/genes9070363

Genome-Wide Comparative Analysis of Aspergillus fumigatus Strains: The Reference Genome as a Matter of Concern
Cited by: 38
Author(s): Rocio Garcia-Rubio, Sara Monzón, Laura Alcázar-Fuoli, Isabel Cuesta, Emilia Mellado
Software Mentions: 1
Published: about 8 years ago

10.1534/g3.114.013623

Crossability of<i>Triticum urartu</i>and<i>Triticum monococcum</i>Wheats, Homoeologous Recombination, and Description of a Panel of Interspecific Introgression Lines
Cited by: 21
Author(s): Agostino Fricano, Andrea Brandolini, Laura Rossini, Pierre Sourdille, Jörg Wunder, Sigi Effgen, Alyssa Hidalgo, Daniela Erba, Pietro Piffanelli, F. Salamini
Software Mentions: 1
Published: about 12 years ago

10.3390/genes9080398

Genome-Wide Characterization of DNA Demethylase Genes and Their Association with Salt Response in Pyrus
Cited by: 14
Author(s): Chunxiao Liu, Hui Li, Jing Lin, Ying Wang, Xiaoyang Xu, Zong‐Ming Cheng, Yonghong Chang
Software Mentions: 1
Published: about 8 years ago

10.3390/genes9110563

Legume Cytosolic and Plastid Acetyl-Coenzyme—A Carboxylase Genes Differ by Evolutionary Patterns and Selection Pressure Schemes Acting before and after Whole-Genome Duplications
Cited by: 7
Author(s): Anna Szczepaniak, Michał Książkiewicz, Jan Podkowiński, Katarzyna B. Czyż, Marek Figlerowicz, B. Naganowska
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13072-016-0068-2

The chicken erythrocyte epigenome
Cited by: 23
Author(s): Sanzida Jahan, Wayne Xu, Shihua He, Carolina González, Geneviève P. Delcuve, James R. Davie
Software Mentions: 1
Published: over 10 years ago

10.3390/genes9120636

Genome Based Meta-QTL Analysis of Grain Weight in Tetraploid Wheat Identifies Rare Alleles of GRF4 Associated with Larger Grains
Cited by: 34
Author(s): Raz Avni, L. Oren, Gai Shabtay, Siwar Assili, Curtis Pozniak, Iago Hale, Roi Ben‐David, Zvi Peleg, Assaf Distelfeld
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41422-018-0008-8

KRAB-type zinc-finger proteins PITA and PISA specifically regulate p53-dependent glycolysis and mitochondrial respiration
Cited by: 27
Author(s): Shan Wang, Zhiqiang Peng, Siying Wang, Lihua Yang, Yuhan Chen, Xue Kong, Shanshan Song, Pei Pei, Chunyan Tian, Hui Yan, Peipei Ding, Weiguo Hu, Cui Hua Liu, Xin Zhang, Fuchu He, Lingqiang Zhang
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21124436

The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase
Cited by: 8
Author(s): Xianjun Li, Junhuan Wang, Jia Yang, Aikebaier Reheman, Yanchun Yan
Software Mentions: 1
Published: over 6 years ago

10.1080/22221751.2020.1852058

Prolonged shedding of severe acute respiratory syndrome coronavirus 2 in patients with COVID-19
Cited by: 63
Author(s): Qian Li, Xiao Zheng, Xu Shen, Rui Hao, Xi Wang, Qi Wang, Bei Li, Wei Zhang, Yan Zhu, Ruijiao Jiang, Kai Zhao, Hui Wang, Zheng Li Shi, Hui Lan Zhang, Rong Du, Peng Zhou
Software Mentions: 1
Published: almost 7 years ago

10.3390/genes10020156

Genome-Wide Identification and Analysis of High-Copy-Number LTR Retrotransposons in Asian Pears
Cited by: 4
Author(s): Shuang Jiang, Xiaoqing Wang, Chunhui Shi, Luo Jun
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-019-0553-9

Compression-induced expression of glycolysis genes in CAFs correlates with EMT and angiogenesis gene expression in breast cancer
Cited by: 35
Author(s): Baek Gil Kim, Jin Sol Sung, Yeonsue Jang, Yoon Jin, Suki Kang, Hyunho Han, Juhyun Lee, Nam Hoon Cho
Software Mentions: 1
Published: about 7 years ago