10.3389/fmicb.2021.696588

A High Starch Diet Alters the Composition of the Intestinal Microbiota of Largemouth Bass Micropterus salmoides, Which May Be Associated With the Development of Enteritis
Cited by: 10
Author(s): Xiaoli Huang, Zhong Liu, Qin Kang, Sha Li, Yun Feng, Yi Geng, Defang Chen, Yangping Ou, Shiyong Yang, Lizi Yin, Wei Luo
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.607432

Refinement of Draft Genome Assemblies of Pigeonpea (Cajanus cajan)
Cited by: 4
Author(s): Soma S. Marla, Pallavi Mishra, Ranjeet Maurya, Mohar Singh, Dhammaprakash Pandhari Wankhede, Anil Kumar, Mahesh C. Yadav, Naidu Subbarao, Sanjeev Kumar Singh, Rajesh Kumar
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2018.02099

Deciphering Resistome and Virulome Diversity in a Porcine Slaughterhouse and Pork Products Through Its Production Chain
Cited by: 16
Author(s): Guillermo Campos Calero, Natacha Caballero Gómez, Nabil Benomar, Beatriz Pérez Montoro, Charles W. Knapp, Antonio Gálvez, Hikmate Abriouel
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2021.731711

Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium Xanthomonas citri subsp. citri
Cited by: 4
Author(s): Chang‐Jen Huang, Ting-Li Wu, Po Xing Zheng, Jheng-Yang Ou, Hui-Fang Ni, Yao‐Cheng Lin
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms9030648

Genome Sequencing of five Lacticaseibacillus Strains and Analysis of Type I and II Toxin-Antitoxin System Distribution
Cited by: 5
Author(s): Alessia Levante, Camilla Lazzi, Giannis Vatsellas, Dimitris Chatzopoulos, Vasilis S. Dionellis, Periklis Makrythanasis, Erasmo Neviani, Claudia Folli
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-77492-2

Genome skimming and exploration of DNA barcodes for Taiwan endemic cypresses
Cited by: 2
Author(s): Ching‐Yi Wu, Edi Sudianto, Yu-Mei Hung, Bo-Cyun Wang, Chin‐Cheng Huang, Chi-Tsong Chen, Shu‐Miaw Chaw
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2019.00812

Complete Genome Sequencing and Comparative Genome Characterization of Lactobacillus johnsonii ZLJ010, a Potential Probiotic With Health-Promoting Properties
Cited by: 32
Author(s): Wei Zhang, Jing Wang, Dongyan Zhang, Hui Liu, Sixin Wang, Yamin Wang, Hai‐Feng Ji
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2016.00340

Genomic Insights into a New Citrobacter koseri Strain Revealed Gene Exchanges with the Virulence-Associated Yersinia pestis pPCP1 Plasmid
Cited by: 11
Author(s): Fabrice Armougom, Idir Bitam, Olivier Croce, Vicky Merhej, Lina Barassi, Ti-Thien Nguyen, Bernard La Scola, Didier Raoult
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.686008

Highly Efficient CRISPR-Mediated Base Editing in Sinorhizobium meliloti
Cited by: 4
Author(s): Longxiang Wang, Yuan Xiao, Xiaowei Wei, Jimin Pan, Deqiang Duanmu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00632

In Silico Genome-Wide Analysis of the Pear (Pyrus bretschneideri) KNOX Family and the Functional Characterization of PbKNOX1, an Arabidopsis BREVIPEDICELLUS Orthologue Gene, Involved in Cell Wall and Lignin Biosynthesis
Cited by: 23
Author(s): Xi Cheng, Manli Li, Muhammad Abdullah, Guohui Li, Jingyun Zhang, Muhammad Aamir Manzoor, Han Wang, Qing Jin, Tao‐Shan Jiang, Yongping Cai, Dahui Li, Yi Lin
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-82584-8

Metagenomic analysis of the gut microbiome composition associated with vitamin D supplementation in Taiwanese infants
Cited by: 12
Author(s): Wei‐Te Lei, Kai-Yao Huang, Jhih-Hua Jhong, Chia-Hung Chen, Shun-Long Weng
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01003

Guarani Virophage, a New Sputnik-Like Isolate From a Brazilian Lake
Cited by: 15
Author(s): Saïd Mougari, Meriem Bekliz, Jônatas Santos Abrahão, Fabrizio Di Pinto, Anthony Levasseur, Bernard La Scola
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.03071

Bacteria From the Multi-Contaminated Tinto River Estuary (SW, Spain) Show High Multi-Resistance to Antibiotics and Point to Paenibacillus spp. as Antibiotic-Resistance-Dissemination Players
Cited by: 11
Author(s): Benedito Eduardo-Correia, Héctor Gabriel Morales-Filloy, José Pascual Abad
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.00404

Genome-Wide Interaction and Pathway Association Studies for Body Mass Index
Cited by: 5
Author(s): Hongxiao Jiao, Yong Zang, Miaomiao Zhang, Yuan Zhang, Yaogang Wang, Kai Wang, Richard A. Price, Wei Dong Li
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.00814

Gut Microbiome Influences the Efficacy of PD-1 Antibody Immunotherapy on MSS-Type Colorectal Cancer via Metabolic Pathway
Cited by: 82
Author(s): Xinjian Xu, Ji Lv, Fang Guo, Jing Li, Yitao Jia, Da Jiang, Na Wang, Chao Zhang, Lingyu Kong, Ya-Bin Liu, Yanni Zhang, Jian Lv, Zhongxin Li
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2018.00494

Molecular Evolution and Stress and Phytohormone Responsiveness of SUT Genes in Gossypium hirsutum
Cited by: 13
Author(s): Wei Li, Kuan Sun, Zhongying Ren, Chengxiang Song, Xinwu Pei, Yangai Liu, Zhenyu Wang, Kunlun He, Fei Zhang, Xin Zhou, Xiongfeng Ma, Daigang Yang
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2016.00251

Genomic Insight into the Host–Endosymbiont Relationship of Endozoicomonas montiporae CL-33T with its Coral Host
Cited by: 72
Author(s): Jun-Ren Ding, Jia Ho Shiu, Wen Ming Chen, Yin-Ru Chiang, Sen Lin Tang
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2019.02040

Tal1NXtc01 in Xanthomonas translucens pv. cerealis Contributes to Virulence in Bacterial Leaf Streak of Wheat
Cited by: 10
Author(s): Syed Mashab Ali Shah, Fazal Haq, Wenxiu Ma, Xiao Xu, Qianqian Wang, Zhi-Hong Xu, Lifang Zou, Bao‐Ku Zhu, Gongyou Chen
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.598285

Isolation, Identification, and Complete Genome Assembly of an Endophytic Bacillus velezensis YB-130, Potential Biocontrol Agent Against Fusarium graminearum
Cited by: 30
Author(s): Wen Xu, Liyong Zhang, Paul H. Goodwin, Mingcong Xia, Jie Zhang, Qi Wang, Juan Boo Liang, Sun Ru, Chao Wu, Lirong Yang
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-80627-0

Analysis of Fox genes in Schmidtea mediterranea reveals new families and a conserved role of Smed-foxO in controlling cell death
Cited by: 9
Author(s): Eudald Pascual-Carreras, Carlos Herrera-Úbeda, Maria Rosselló, Pablo Coronel-Córdoba, Jordi Garcia‐Fernàndez, Emili Saló, Teresa Adell
Software Mentions: 1
Published: over 5 years ago

10.1186/s12936-016-1641-7

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification
Cited by: 122
Author(s): Samuel O. Oyola, Cristina V. Ariani, William L. Hamilton, Mihir Kekre, Lucas Amenga-Etego, Anita Ghansah, Gavin G. Rutledge, Seth Redmond, Magnus Manske, Dushyanth Jyothi, Chris Jacob, Thomas D. Otto, Kirk A. Rockett, Chris Newbold, Matthew Berriman, Dominic P. Kwiatkowski
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2019.02905

Basal Rot of Narcissus: Understanding Pathogenicity in Fusarium oxysporum f. sp. narcissi
Cited by: 8
Author(s): Andrew Taylor, Andrew D. Armitage, Claire Handy, Alison C. Jackson, Michelle T. Hulin, Richard J. Harrison, John P. Clarkson
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2018.00577

Pan-Genome Analysis Links the Hereditary Variation of Leptospirillum ferriphilum With Its Evolutionary Adaptation
Cited by: 16
Author(s): Xian Zhang, Xueduan Liu, Fei Yang, Chen Lv
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.01994

The Pelagic Bacterium Paraphotobacterium marinum Has the Smallest Complete Genome Within the Family Vibrionaceae
Cited by: 3
Author(s): Zhongdong Huang, Zhen Liu, Zongze Shao
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2018.02098

A Phylogenomic Study of Acanthamoeba polyphaga Draft Genome Sequences Suggests Genetic Exchanges With Giant Viruses
Cited by: 27
Author(s): Nisrine Chelkha, Anthony Levasseur, Pierre Pontarotti, Didier Raoult, Bernard La Scola, Philippe Colson
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2019.02562

Conversion of a recA-Mediated Non-toxigenic Vibrio cholerae O1 Strain to a Toxigenic Strain Using Chitin-Induced Transformation
Cited by: 10
Author(s): Shrestha Sinha-Ray, Meer T. Alam, Satyabrata Bag, J. Glenn Morris, Afsar Ali
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2016.00913

Isolation and Genomic Characterization of ‘Desulfuromonas soudanensis WTL’, a Metal- and Electrode-Respiring Bacterium from Anoxic Deep Subsurface Brine
Cited by: 45
Author(s): Jonathan P. Badalamenti, Zarath M. Summers, Chi Ho Chan, Jeffrey A. Gralnick, Daniel R. Bond
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2020.01948

Effects of Continuous Nitrogen Fertilizer Application on the Diversity and Composition of Rhizosphere Soil Bacteria
Cited by: 49
Author(s): Ning Ren, Yang Wang, Youliang Ye, Yanan Zhao, Yufang Huang, Wen Fu, Xv Chu
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.00790

Comparative Genomics Unravels the Functional Roles of Co-occurring Acidophilic Bacteria in Bioleaching Heaps
Cited by: 12
Author(s): Xian Zhang, Xueduan Liu, Yili Liang, Yunhua Xiao, Liyuan Ma, Xue Guo, Bo Miao, Hongwei Liu, Deliang Peng, Wenkun Huang, Huaqun Yin
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.00047

Comparative Insights Into the Complete Genome Sequence of Highly Metal Resistant Cupriavidus metallidurans Strain BS1 Isolated From a Gold–Copper Mine
Cited by: 21
Author(s): Sohaib H. Mazhar, Martin Herzberg, Ibtissem Ben Fekih, Chenkang Zhang, Suleiman Kehinde Bello, Yuan Ping Li, JunMing Su, Jin Xu, Renwei Feng, Shungui Zhou, Christopher Rensing
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2016.00176

Retention and Molecular Evolution of Lipoxygenase Genes in Modern Rosid Plants
Cited by: 7
Author(s): Chen Zhu, Danmei Chen, Wenyuan Chu, Dan Zhu, Hanwei Yan, Yan Xiang
Software Mentions: 1
Published: about 10 years ago

10.3389/fgene.2021.584886

Genome-Wide Characterization of HSP90 Gene Family in Cucumber and Their Potential Roles in Response to Abiotic and Biotic Stresses
Cited by: 9
Author(s): Kaijing Zhang, Shuaishuai He, Sui YiHu, Qinghai Gao, Shuangshuang Jia, Xingrong Lu, Jia Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00869

Dynamics Relationship of Phyllosphere and Rhizosphere Bacterial Communities During the Development of Bothriochloa ischaemum in Copper Tailings
Cited by: 5
Author(s): Tong Jia, Yushan Yao, Ruihong Wang, Tiehang Wu, Bo Chai
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-82857-2

In silico identification of natural products from Traditional Chinese Medicine for cancer immunotherapy
Cited by: 13
Author(s): Chuipu Cai, Qihui Wu, Honghai Hong, Lin He, Zhihong Liu, Yong Gu, Shijie Zhang, Qi Wang, Xiude Fan, Jiansong Fang
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.588117

Comparative Analysis of Physicochemical Properties and Microbial Composition in High-Temperature Daqu With Different Colors
Cited by: 57
Author(s): Lei Deng, Xiang Mao, Dan Liu, Xinqiang Ning, Yi Shen, Bo Chen, Hong-Fang Nie, Dan Huang, Huibo Luo
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.02608

Emerging Variants of the Integrative and Conjugant Element ICEMh1 in Livestock Pathogens: Structural Insights, Potential Host Range, and Implications for Bacterial Fitness and Antimicrobial Therapy
Cited by: 6
Author(s): Andrew Cameron, Rahat Zaheer, Tim A. McAllister
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2019.02812

Genome Sequencing of Mesonia algae K4-1 Reveals Its Adaptation to the Arctic Ocean
Cited by: 8
Author(s): Ran Huan, Jiafeng Huang, Dan Liú, Meng Wang, CongLing Liu, Yun‐Qian Zhang, Yi Chen, Dong Xiao, Hui He
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2021.696300

Identification and Expression Analyses of Invertase Genes in Moso Bamboo Reveal Their Potential Drought Stress Functions
Cited by: 4
Author(s): Chenglei Zhu, Kebin Yang, Guangzhu Li, Ying Liu, Zhimin Gao
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.544785

Combined Methylome, Transcriptome and Proteome Analyses Document Rapid Acclimatization of a Bacterium to Environmental Changes
Cited by: 7
Author(s): Abhishek Srivastava, Jayaseelan Murugaiyan, Juan A. L. García, Daniele De Corte, Matthias Hoetzinger, Murat Eravci, Christoph Weise, Yadhu Kumar, Uwe Roesler, Martin W. Hahn, Hans‐Peter Grossart
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.628622

High Rates of Genome Rearrangements and Pathogenicity of Shigella spp.
Cited by: 9
Author(s): Zaira Seferbekova, Alexey Zabelkin, Yulia Yakovleva, Robert Afasizhev, Natalia O Dranenko, Nikita Alexeev, Mikhail S. Gelfand, Olga O Bochkareva
Software Mentions: 1
Published: over 5 years ago

10.1016/j.isci.2020.101241

ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era
Cited by: 49
Author(s): Songtao Gui, L. Yang, Jianbo Li, Jingyun Luo, Xiaokai Xu, Jianyu Yuan, Lu Chen, Wenqiang Li, Xin Yang, Shenshen Wu, Shuyan Li, Yuebin Wang, Yabing Zhu, Qiang Gao, Ning Yang, Jianbing Yan
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.590535

Genome-Wide Identification and Comparative Analysis of ARF Family Genes in Three Apiaceae Species
Cited by: 6
Author(s): Qiaoying Pei, Nan Li, Qing Yang, Tong Wu, Shuyan Feng, Xuehuan Feng, Zange Jing, Rong Zhou, Ke Gong, Tong Yu, Zhen Wang, Xiaoming Song
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.737194

StAR-Related Lipid Transfer (START) Domains Across the Rice Pangenome Reveal How Ontogeny Recapitulated Selection Pressures During Rice Domestication
Cited by: 2
Author(s): Sanjeet Kumar Mahtha, Ravi Kiran Purama, Gitanjali Yadav
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.00487

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation
Cited by: 9
Author(s): Deborah Weighill, David Macaya‐Sanz, Stephen P. DiFazio, Wayne Joubert, Manesh Shah, Jeremy Schmutz, Avinash Sreedasyam, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-84286-7

Complete genome sequencing of Bacillus sp. TK-2, analysis of its cold evolution adaptability
Cited by: 9
Author(s): Lijun Shen, Xueli Zang, Ke Sun, Huan Chen, Xinying Che, Yansong Sun, Gang Wang, Sitong Zhang, Guang Chen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-019-1907-4

Chromosomal instability of circulating tumor DNA reflect therapeutic responses in advanced gastric cancer
Cited by: 17
Author(s): Zuhua Chen, Cheng Zhang, Zhang Mengqi, Beifang Li, Yue Niu, Limeng Chen, Jing Yang, Sijia Lü, Jing Gao, Lin Shen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41418-021-00778-z

USP24 promotes drug resistance during cancer therapy
Cited by: 9
Author(s): Shao-An Wang, Ming Jer Young, Yi Chang Wang, Shu Hui Chen, Chia-Yu Liu, Yao An Lo, Hung Hsiang Jen, Kai Cheng Hsu, Jan Jong Hung
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02539

Characterization of Diversity and Probiotic Efficiency of the Autochthonous Lactic Acid Bacteria in the Fermentation of Selected Raw Fruit and Vegetable Juices
Cited by: 33
Author(s): Xinxing Xu, Dongsheng Luo, Yejun Bao, Xiaojun Liao, Jihong Wu
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.7817

Identification of FGF19 as a prognostic marker and potential driver gene of lung squamous cell carcinomas in Chinese smoking patients
Cited by: 27
Author(s): Qiang Tan, Li Fan, Guan Wang, Weiliang Xia, Ziming Li, Xiaomin Niu, Wei Ji, Hong Ye, Qiang Xu, Qingquan Luo, Jie Zhang, Shun Lü
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-84778-6

Structural characterization and duplication modes of pseudogenes in plants
Cited by: 11
Author(s): Flavia Mascagni, Gabriele Usai, Andrea Cavallini, Andrea Porceddu
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01747

Genomic Surveillance of Ceftriaxone-Resistant Escherichia coli in Western New York Suggests the Extended-Spectrum β-Lactamase blaCTX-M-27 Is Emerging on Distinct Plasmids in ST38
Cited by: 13
Author(s): Heba H. Mostafa, Andrew Cameron, Samantha M. Taffner, Jun Wang, Adel Malek, Ghinwa Dumyati, Dwight J. Hardy, Nicole Pecora
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.02056

Spartinivicinus ruber gen. nov., sp. nov., a Novel Marine Gammaproteobacterium Producing Heptylprodigiosin and Cycloheptylprodigiosin as Major Red Pigments
Cited by: 16
Author(s): Zhongdong Huang, Dong Liang, Qiliang Lai, Jie‐Qing Liu
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2017.00254

Comparative Genome Analysis of Three Thiocyanate Oxidizing Thioalkalivibrio Species Isolated from Soda Lakes
Cited by: 37
Author(s): Tom Berben, Lex Overmars, Dimitry Y. Sorokin, Gerard Muyzer
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.610698

Anti-Foc RT4 Activity of a Newly Isolated Streptomyces sp. 5–10 From a Medicinal Plant (Curculigo capitulata)
Cited by: 16
Author(s): Tao Yun, Miaoyi Zhang, Dengbo Zhou, Jing Tao, Xiaoping Zang, Defeng Qi, Yufeng Chen, Kai Li, Yanbin Zhao, Wen Tang, Jiaquan Huang, Wei Wang, Jianghui Xie
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01806

Genetic and Biochemical Evidence That Enterococcus faecalis Gr17 Produces a Novel and Sec-Dependent Bacteriocin, Enterocin Gr17
Cited by: 9
Author(s): Guorong Liu, Yao Wang, Xue Li, Hao Xu, Duoxia Xu, Yuguang Zhou, Arshad Mehmood
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2020.581802

Mechanism of the Potential Therapeutic Candidate Bacillus subtilis BSXE-1601 Against Shrimp Pathogenic Vibrios and Multifunctional Metabolites Biosynthetic Capability of the Strain as Predicted by Genome Analysis
Cited by: 6
Author(s): Dongdong Wang, Jiahui Li, Guoliang Zhu, Kun Zhao, Wenwen Jiang, Haidong Li, Wenjun Wang, Vikash Kumar, Shuanglin Dong, Weiming Zhu, Xiangli Tian
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.00443

A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins
Cited by: 28
Author(s): Charles Coluzzi, Gérard Guédon, Marie‐Dominique Devignes, Chloé Ambroset, Valentin Loux, Thomas Lacroix, Sophie Payot, Nathalie Leblond‐Bourget
Software Mentions: 1
Published: over 9 years ago

10.1038/s41418-020-0521-4

53BP1 loss rescues embryonic lethality but not genomic instability of BRCA1 total knockout mice
Cited by: 19
Author(s): Jiyuan Chen, Peng Li, Licun Song, Long Bai, Michael S. Y. Huen, Yidan Liu, Lin-Yu Lu
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.8002

Determination of somatic oncogenic mutations linked to target-based therapies using MassARRAY technology
Cited by: 10
Author(s): Maider Ibarrola‐Villava, Tania Fleitas, Marta J. Llorca-Cardeñosa, Cristina Mongort, Elisa Alonso, Samuel Navarro, Octavio Burgués, Ana Vivancos, Juan Miguel Cejalvo, Jose Alejandro Pérez-Fidalgo, Susana Roselló, Gloría Ribas, Andrés Cervantes
Software Mentions: 1
Published: over 10 years ago

10.1038/s41418-020-0543-y

Inhibition of the autophagic protein ULK1 attenuates axonal degeneration in vitro and in vivo, enhances translation, and modulates splicing
Cited by: 23
Author(s): Björn Friedhelm Vahsen, Vinícius Toledo Ribas, Jonas Sundermeyer, Alexander Boecker, Vivian Dambeck, Christof Lenz, Orr Shomroni, Lucas Caldi Gomes, Lars Tatenhorst, Elisabeth Barski, Anna-Elisa Roser, Uwe Michel, Henning Urlaub, Gabriela Salinas, Mathias Bähr, Jan Christoph Koch, Paul Lingor
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2019.01616

Bacterial Acid Resistance Toward Organic Weak Acid Revealed by RNA-Seq Transcriptomic Analysis in Acetobacter pasteurianus
Cited by: 24
Author(s): Haoran Yang, Yongjian Yu, Caixia Fu, Fusheng Chen
Software Mentions: 1
Published: about 7 years ago

10.1016/j.cell.2015.10.009

Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago
Cited by: 390
Author(s): Simon Rasmussen, Morten E. Allentoft, Kasper Nielsen, Ludovic Orlando, Martin Sikora, Karl-Göran Sjögren, Anders Gorm Pedersen, Mikkel Schubert, Alex Van Dam, Christian M. O. Kapel, Henrik Bjørn Nielsen, Søren Brunak, Պավել Ավետիսյան, Andrey Epimakhov, Mikhail Viktorovich Khalyapin, Artak Gnuni, Айвар Крийска, Irena Lasak, Mait Metspalu, Vyacheslav Moiseyev, А. В. Громов, Dalia Pokutta, Lehti Saag, Liivi Varul, Levon Yepiskoposyan, Thomas Sicheritz-Pontén, Robert Foley, Marta Mirazón Lahr, Rasmus Nielsen, Kristian Kristiansen, Eske Willerslev
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-021-85754-w

Genome-wide characterization and analysis of bHLH transcription factors related to anthocyanin biosynthesis in spine grapes (Vitis davidii)
Cited by: 24
Author(s): Ming Li, Lina Sun, Hongcang Gu, Dawei Cheng, Xiaoxia Guo, Rui Chen, Zhiyong Wu, Jianfu Jiang, Xiucai Fan, Jinyong Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.02104

Comparative Genomics and Phylogenomic Analysis of the Genus Salinivibrio
Cited by: 17
Author(s): Rafael R. de la Haba, Clara López-Hermoso, Cristina Sánchez‐Porro, Konstantinos T. Konstantinidis, António Ventosa
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2014.00084

A Glimpse of the genomic diversity of haloarchaeal tailed viruses
Cited by: 17
Author(s): Ana Senčilo, Elina Roine
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2020.01934

Comparative Genomic and Secretomic Analysis Provide Insights Into Unique Agar Degradation Function of Marine Bacterium Vibrio fluvialis A8 Through Horizontal Gene Transfer
Cited by: 5
Author(s): Chunsheng Li, Chi Li, Laihao Li, Xianqing Yang, Shengjun Chen, Qi Bo, Yongqiang Zhao
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.8322

Transcriptome-wide analysis of compression-induced microRNA expression alteration in breast cancer for mining therapeutic targets
Cited by: 23
Author(s): Baek Gil Kim, Suki Kang, Hyunho Han, Juhyun Lee, Ji Eun Kim, Sung Hwan Lee, Nam Hoon Cho
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-86838-3

Genome-wide discovery of G-quadruplexes in barley
Cited by: 14
Author(s): H Busra Cagirici, Hikmet Budak, Taner Z. Sen
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2015.00349

Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population
Cited by: 52
Author(s): Jessica M. Labonté, Erin K. Field, Maggie C. Y. Lau, Dylan Chivian, Esta van Heerden, K. Eric Wommack, Thomas L. Kieft, Tullis C. Onstott, Ramunas Stepanauskas
Software Mentions: 1
Published: over 11 years ago

10.1016/j.cell.2010.11.055

Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development
Cited by: 1,964
Author(s): Philip J. Stephens, Chris Greenman, Beiyuan Fu, Fengtang Yang, Graham R. Bignell, Laura Mudie, Erin Pleasance, King Wai Lau, David Beare, Lucy Stebbings, Stuart McLaren, Meng-Lay Lin, David J. McBride, Ignacio Varela, Serena Nik-Zainal, Catherine Leroy, Mingming Jia, Andrew Menzies, Adam Butler, Jon W. Teague, Michael A. Quail, John H. Burton, Harold Swerdlow, Nigel P. Carter, Laura Morsberger, Christine A. Iacobuzio‐Donahue, George Follows, Andrew Green, Adrienne M. Flanagan, Michael R. Stratton, P. Andrew Futreal, Peter J. Campbell
Software Mentions: 1
Published: almost 16 years ago

10.3389/fmicb.2018.01573

The Identification of DepB: An Enzyme Responsible for the Final Detoxification Step in the Deoxynivalenol Epimerization Pathway in Devosia mutans 17-2-E-8
Cited by: 41
Author(s): Jason Carere, Yousef I. Hassan, Dion Lepp, Ting Zhou
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2020.02047

Structural and Proteomic Studies of the Aureococcus anophagefferens Virus Demonstrate a Global Distribution of Virus-Encoded Carbohydrate Processing
Cited by: 4
Author(s): Eric R. Gann, Yuejiao Xian, Paul E. Abraham, Robert L. Hettich, Todd B. Reynolds, Chuan Xiao, Steven W. Wilhelm
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers10070231

Vaccinia Virus Shuffling: deVV5, a Novel Chimeric Poxvirus with Improved Oncolytic Potency
Cited by: 14
Author(s): Marine Ricordel, Johann Foloppe, D Antoine, Annie Findeli, Juliette Kempf, Pascale Cordier, Aude Gerbaud, Benoît Grellier, Monika Lusky, Éric Quémeneur, Philippe Erbs
Software Mentions: 1
Published: about 8 years ago

10.3390/cancers11040522

Germline Missense Variants in BRCA1: New Trends and Challenges for Clinical Annotation
Cited by: 16
Author(s): Volha A. Golubeva, Thales C. Nepomuceno, Alvaro N.A. Monteiro
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.749218

Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis
Cited by: 4
Author(s): Shenglei Yuan, Yundan Wang, Fangqing Zhao, Le Kang
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers12092489

lncRNAs–mRNAs Co–Expression Network Underlying Childhood B–Cell Acute Lymphoblastic Leukaemia: A Pilot Study
Cited by: 9
Author(s): Ornella Affinito, Katia Pane, Giovanni Smaldone, Francesca Maria Orlandella, Peppino Mirabelli, Giuliana Beneduce, Rosanna Parasole, Mimmo Ripaldi, Marco Salvatore, Monica Franzese
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2020.611143

Impact of Bacillus on Phthalides Accumulation in Angelica sinensis (Oliv.) by Stoichiometry and Microbial Diversity Analysis
Cited by: 5
Author(s): Wei-Meng Feng, Pei Liu, Hui Yan, Sen Zhang, Erxin Shang, Guang Yu, Shu Jiang, Dawei Qian, Junwei Ma, Jin‐Ao Duan
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.618649

The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales
Cited by: 9
Author(s): Abdullah Zubaer, Alvan Wai, Nikita Patel, Jordan Perillo, Georg Hausner
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01044

Exopolysaccharide, Isolated From a Novel Strain Bifidobacterium breve lw01 Possess an Anticancer Effect on Head and Neck Cancer – Genetic and Biochemical Evidences
Cited by: 26
Author(s): Lin Wang, Yifei Wang, Qingxiang Li, Kai Tian, Le Xu, Guorong Liu, Chuanbin Guo
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers12040843

Plasma and Tissue Specific miRNA Expression Pattern and Functional Analysis Associated to Colorectal Cancer Patients
Cited by: 37
Author(s): Roxana Cojocneanu, Cornelia Braicu, Lajos Ráduly, Ancuța Jurj, Oana Zănoagă, Lorand Magdo, Alexandru Irimie, Mihai-Stefan Muresan, Călin Ionescu, Mircea Grigorescu, Ioana Berindan‐Neagoe
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.696102

Description, Taxonomy, and Comparative Genomics of a Novel species, Thermoleptolyngbya sichuanensis sp. nov., Isolated From Hot Springs of Ganzi, Sichuan, China
Cited by: 13
Author(s): Jie Tang, Liheng Li, Meijin Li, Lianming Du, Mahfuzur Rahman Shah, Małgorzata Waleron, Krzysztof Waleron, Maurycy Daroch
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2021.674147

Molecular Characterization and Survive Abilities of Salmonella Heidelberg Strains of Poultry Origin in Brazil
Cited by: 12
Author(s): Roberta Torres de Melo, Newton Nascentes Galvão, Micaela Guidotti Takeuchi, Phelipe Augusto Borba Martins Peres, Belchiolina Beatriz Fonseca, Rodrigo Profeta, Vasco Azevedo, Guilherme Paz Monteiro, Bertram Brenig, Daise Aparecida Rossi
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.00785

Complete Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma atroviride: Genomic Features, Comparative Analysis and Insight Into the Mitochondrial Evolution in Trichoderma
Cited by: 8
Author(s): Yunyoung Kwak
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9071395

Corynebacterium glutamicum Regulation beyond Transcription: Organizing Principles and Reconstruction of an Extended Regulatory Network Incorporating Regulations Mediated by Small RNA and Protein–Protein Interactions
Cited by: 5
Author(s): Juan M. Escorcia-Rodríguez, Andreas Tauch, Julio A. Freyre-González
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.01373

Genetic Diversity, Virulence, Race Profiling, and Comparative Genomic Analysis of the Fusarium oxysporum f. sp. conglutinans Strains Infecting Cabbages in China
Cited by: 16
Author(s): Xing Liu, Miaomiao Xing, Chunli Kong, Zhiyuan Fang, Limei Yang, Yangyong Zhang, Yong Wang, Jian Ling, Youyou Yang, Honghao Lv
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.9080

EphB6 overexpression and <i>Apc</i> mutation together promote colorectal cancer
Cited by: 19
Author(s): Da Xu, Long Yuan, Xin Liu, Mingqi Li, Fubin Zhang, Xin Gu, Dongwei Zhang, Youlin Yang, Binbin Cui, Jinxue Tong, Jin Zhou, Zhiwei Yu
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-87722-w

Comprehensive molecular dissection of TIFY Transcription factors reveal their dynamic responses to biotic and abiotic stress in wheat (Triticum aestivum L.)
Cited by: 14
Author(s): Poonam Singh, Kunal Mukhopadhyay
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2016.01541

Genome Sequencing and Comparative Genomics Analysis Revealed Pathogenic Potential in Penicillium capsulatum as a Novel Fungal Pathogen Belonging to Eurotiales
Cited by: 9
Author(s): Ying Yang, Min Chen, Zongwei Li, Abdullah M. S. Al‐Hatmi, Sybren de Hoog, Weihua Pan, Qiang Ye, Xiaochen Bo, Zhen Li, Shengqi Wang, Junzhi Wang, Huipeng Chen, Wanqing Liao
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2020.580719

Metabolic Contributions of an Alphaproteobacterial Endosymbiont in the Apicomplexan Cardiosporidium cionae
Cited by: 8
Author(s): Elizabeth Sage Hunter, Christopher Paight, Christopher E. Lane
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms6030063

Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System
Cited by: 11
Author(s): Anders Schouw, Francesca Vulcano, Irene Roalkvam, William G. Hocking, Eoghan P. Reeves, Runar Stokke, Gunhild Bødtker, Ida Helene Steen
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2017.01673

An Anthropocentric View of the Virosphere-Host Relationship
Cited by: 25
Author(s): Rodrigo Araújo Lima Rodrigues, Aron José Pazin de Andrade, Paulo Victor de Miranda Boratto, Giliane de Souza Trindade, Erna Geessien Kroon, Jônatas Santos Abrahão
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.01654

Environmental Bacteriophages of the Emerging Enterobacterial Phytopathogen, Dickeya solani, Show Genomic Conservation and Capacity for Horizontal Gene Transfer between Their Bacterial Hosts
Cited by: 15
Author(s): Alison M. Day, Jiyoon Ahn, Xinzhe Fang, George P. C. Salmond
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2017.01507

Genome Sequencing Reveals the Potential of Achromobacter sp. HZ01 for Bioremediation
Cited by: 38
Author(s): Yongfeng Hong, Cong-Cong Ye, Qing Zhou, Xiaoying Wu, Jianping Yuan, Juan Peng, Hailin Deng, Jiang-Hai Wang
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2018.02169

Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani
Cited by: 14
Author(s): Alison M. Day, Jiyoon Ahn, George P. C. Salmond
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2017.01422

SMRT Sequencing Revealed Mitogenome Characteristics and Mitogenome-Wide DNA Modification Pattern in Ophiocordyceps sinensis
Cited by: 35
Author(s): Xincong Kang, Liqin Hu, Pengyuan Shen, Rui Li, Dongbo Liu
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2016.01960

Gene Turnover Contributes to the Evolutionary Adaptation of Acidithiobacillus caldus: Insights from Comparative Genomics
Cited by: 22
Author(s): Xian Zhang, Xueduan Liu, Qiang He, Weiling Dong, Xiaoxia Zhang, Fenliang Fan, Deliang Peng, Wenkun Huang, Huaqun Yin
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0064929

A Computational Systems Biology Study for Understanding Salt Tolerance Mechanism in Rice
Cited by: 26
Author(s): Juexin Wang, Liang Chen, Yan Wang, Jingfen Zhang, Yanchun Liang, Dong Xu
Software Mentions: 1
Published: over 13 years ago

10.3389/fmicb.2021.733631

Discovery of Novel Viruses Associated With the Invasive Cane Toad (Rhinella marina) in Its Native and Introduced Ranges
Cited by: 5
Author(s): Alice G. Russo, Emma F. Harding, Grace J. H. Yan, D. Selechnik, Simon Ducatez, Jayna L. DeVore, Jia Zhou, Roshmi Rekha Sarma, Yin Peng Lee, Mark F. Richardson, Richard Shine, Lee A. Rollins, Peter A. White
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0042041

The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Cited by: 19
Author(s): Zhang Tongwu, Songnian Hu, Guangyu Zhang, Li-Long Pan, Xiaowei Zhang, Ibrahim S. Al-Mssallem, Jun Yu
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0171181

Comparative analysis of NBS-LRR genes and their response to Aspergillus flavus in Arachis
Cited by: 35
Author(s): Hui Song, Pengfei Wang, Changsheng Li, Soohee Han, Chuanzhi Zhao, Han Xia, Yuping Bi, Bao‐Zhu Guo, Xinyou Zhang, Xingjun Wang
Software Mentions: 1
Published: over 9 years ago