Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Circos

https://packages.ecosyste.ms/registries/pypi.org/packages/Circos

Circos plots in Python!
10 versions
Latest release: about 1 year ago
55 downloads last month

Papers Mentioning Circos 2,252

10.3389/fgene.2019.00980
Identification and Analysis of the GASR Gene Family in Common Wheat (Triticum aestivum L.) and Characterization of TaGASR34, a Gene Associated With Seed Dormancy and Germination
Cited by: 26
Author(s): Xinran Cheng, Shengxing Wang, Dongmei Xu, Liyan Xue, Xinyu Li, Weiwei Xiao, Junhui Cao, Hao Jiang, Xiaoyu Min, Jianfeng Wang, Haiping Zhang, Cheng Chang, Jie Lu, Chunyan Ma
Software Mentions: 1
Published: about 5 years ago
10.3389/fgene.2020.609184
Genome-Wide Characterization of the HSP20 Gene Family Identifies Potential Members Involved in Temperature Stress Response in Apple
Cited by: 22
Author(s): Feng Yao, Chunhui Song, Hongtao Wang, Shangwei Song, Jian Jiao, Miaomiao Wang, Xianbo Zheng, Tuanhui Bai
Software Mentions: 1
Published: about 4 years ago
10.3389/fgene.2014.00183
YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps
Cited by: 0
Author(s): Keith Batesole, Kokulapalan Wimalanathan, Lin Liu, Fan Zhang, Craig S. Echt, Chun Liang
Software Mentions: 1
Published: over 10 years ago
10.3389/fmicb.2020.610395
Comparative Methylome Analysis of Campylobacter jejuni Strain YH002 Reveals a Putative Novel Motif and Diverse Epigenetic Regulations of Virulence Genes
Cited by: 3
Author(s): Sandeep Ghatak, Cheryl M. Armstrong, Sandra M. Reed, Yiping He
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2021.677654
Revealing Microbiome Structure and Assembly Process in Three Rhizocompartments of Achyranthes bidentata Under Continuous Monoculture Regimes
Cited by: 3
Author(s): Juanying Wang, Hongmiao Wu, Linkun Wu, Ye Liu, Puleng Letuma, Xianjin Qin, Ting Chen, Christopher Rensing, Shan Lin, Wenxiong Lin
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2018.00137
The DNA Methylome of the Hyperthermoacidophilic Crenarchaeon Sulfolobus acidocaldarius
Cited by: 23
Author(s): Mohea Couturier, Ann-Christin Lindås
Software Mentions: 1
Published: almost 7 years ago
10.3389/fmicb.2016.01756
Genome Sequence of Pseudomonas koreensis CRS05-R5, an Antagonistic Bacterium Isolated from Rice Paddy Field
Cited by: 13
Author(s): Haiyan Lin, Shikai Hu, Ruifang Liu, Ping Chen, Changwei Ge, Bo Zhu, Longbiao Guo
Software Mentions: 1
Published: about 8 years ago
10.3389/fmicb.2019.02194
Genomic Characterization of the Periwinkle Leaf Yellowing (PLY) Phytoplasmas in Taiwan
Cited by: 19
Author(s): Shu-Ting Cho, Chan‐Pin Lin, Chih-Horng Kuo
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2019.03129
A Resequencing-Based Ultradense Genetic Map of Hericium erinaceus for Anchoring Genome Sequences and Identifying Genetic Loci Associated With Monokaryon Growth
Cited by: 7
Author(s): Wànkuí Gǒng, Conghua Xie, Yingjun Zhou, Zuohua Zhu, Yahui Wang, Yu Peng
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2021.688981
Correlation: Between Autochthonous Microbial Diversity and Volatile Metabolites During the Fermentation of Nongxiang Daqu
Cited by: 20
Author(s): Yu-Ke Deng, Dan Huang, Bao-Lin Han, Xinqian Ning, Yu Dong, Huixiang Guo, Yufang Zou, Wen Jing, Huibo Luo
Software Mentions: 1
Published: about 3 years ago
10.3389/fmolb.2020.00187
Are Antisense Proteins in Prokaryotes Functional?
Cited by: 19
Author(s): Zachary Ardern, Klaus Neuhaus, Stephen W. Scherer
Software Mentions: 1
Published: over 4 years ago
10.3389/fnana.2020.00023
Antennal Lobe Atlas of an Emerging Corn Pest, Athetis dissimilis
Cited by: 2
Author(s): Jun-Feng Dong, Nan-Ji Jiang, Xincheng Zhao, Rui Tang
Software Mentions: 1
Published: over 4 years ago
10.3389/fneur.2021.635419
Anti-aquaporin 4 IgG Is Not Associated With Any Clinical Disease Characteristics in Neuromyelitis Optica Spectrum Disorder
Cited by: 10
Author(s): Oliver Schmetzer, Elisa Lakin, Ben Roediger, Ankelien Duchow, Susanna Asseyer, Friedemann Paul, Nadja Siebert
Software Mentions: 1
Published: over 3 years ago
10.3389/fneur.2019.01105
A Distance-Based Neurorehabilitation Evaluation Method Using Linear SVM and Resting-State fMRI
Cited by: 3
Author(s): Yunxiang Ge, Yu Pan, Qiong Wu, Wei Dou
Software Mentions: 1
Published: about 5 years ago
10.3389/fnins.2014.00325
GEMINs: potential therapeutic targets for spinal muscular atrophy?
Cited by: 14
Author(s): Rebecca Borg, Ruben J. Cauchi
Software Mentions: 1
Published: about 10 years ago
10.3389/fnins.2019.01111
Network Representations of Facial and Bodily Expressions: Evidence From Multivariate Connectivity Pattern Classification
Cited by: 3
Author(s): Yin Liang, Baolin Liu, Junzhong Ji, Xianglin Li
Software Mentions: 1
Published: about 5 years ago
10.3389/fnins.2019.01087
Effects of Chronic Sleep Restriction on the Brain Functional Network, as Revealed by Graph Theory
Cited by: 20
Author(s): Farzad V. Farahani, Magdalena Fąfrowicz, Waldemar Karwowski, Pamela K. Douglas, Aleksandra Domagalik, Ewa Beldzik, Halszka Ogińska, Tadeusz Marek
Software Mentions: 1
Published: about 5 years ago
10.3389/fnut.2021.633738
Effect of a Humanized Diet Profile on Colonization Efficiency and Gut Microbial Diversity in Human Flora-Associated Mice
Cited by: 4
Author(s): Sashuang Dong, Benhua Zeng, Ling Hu, Yuling Zhang, Jiaqi Xiong, Jing Deng, Liyan Huang, Zhenlin Liao, Jie Wang, Hong Wei, Xiang Fang
Software Mentions: 1
Published: over 3 years ago
10.3389/fonc.2014.00202
Ultra-High Density SNParray in Neuroblastoma Molecular Diagnostics
Cited by: 46
Author(s): Inge M. Ambros, C Brunner, Reza Abbasi, Christian Frech, Peter F. Ambros
Software Mentions: 1
Published: over 10 years ago
10.3389/fonc.2020.584095
DNA Copy Number Changes in Diffuse Large B Cell Lymphomas
Cited by: 8
Author(s): Luciano Cascione, Luca Aresu, Michael Baudis, Francesco Bertoni
Software Mentions: 1
Published: almost 4 years ago
10.3389/fonc.2018.00040
Live-Cell Mesothelioma Biobank to Explore Mechanisms of Tumor Progression
Cited by: 14
Author(s): Kathrin Oehl, Jelena Kresoja‐Rakic, Isabelle Opitz, Bart Vrugt, Walter Weder, Rolf A. Stahel, Peter J. Wild, Emanuela Felley‐Bosco
Software Mentions: 1
Published: over 6 years ago
10.3389/fonc.2020.609839
Whole-Exome Sequencing Reveals New Potential Mutations Genes for Primary Mucosa-Associated Lymphoid Tissue Lymphoma Arising From the Kidney
Cited by: 3
Author(s): Shuang Wen, Tianqing Liu, Hongshuo Zhang, Xu Zhou, Huidan Jin, Min Sun, Zhi-Fei Yun, Hong Luo, Ze Ni, Rui Zhao, Bo Fan
Software Mentions: 1
Published: almost 4 years ago
10.3389/fphar.2021.607200
The Species Identification in Traditional Herbal Patent Medicine, Wuhu San, Based on Shotgun Metabarcoding
Cited by: 9
Author(s): Jinxin Liu, Weishan Mu, Mengmeng Shi, Qing Zhao, Weijun Kong, Hongbo Xie, Linchun Shi
Software Mentions: 1
Published: almost 4 years ago
10.3389/fphar.2019.00272
Alcohol Extracts From Ganoderma lucidum Delay the Progress of Alzheimer’s Disease by Regulating DNA Methylation in Rodents
Cited by: 25
Author(s): Guoxiao Lai, Yinrui Guo, Diling Chen, Xiaocui Tang, Ou Shuai, Tianqiao Yong, Dongdong Wang, Chun Xiao, Gailian Zhou, Yizhen Xie, Burton B. Yang, Qingping Wu
Software Mentions: 1
Published: over 5 years ago
10.3389/fphar.2021.607210
Precise Species Detection in Traditional Herbal Patent Medicine, Qingguo Wan, Using Shotgun Metabarcoding
Cited by: 5
Author(s): Jinxin Liu, Mengmeng Shi, Qing Zhao, Weijun Kong, Weishan Mu, Hongbo Xie, Zhongsi Li, Baoli Li, Linchun Shi
Software Mentions: 1
Published: over 3 years ago
10.3389/fphar.2021.607197
Biological Ingredient Analysis of Traditional Herbal Patent Medicine Fuke Desheng Wan Using the Shotgun Metabarcoding Approach
Cited by: 4
Author(s): Hongbo Xie, Qing Zhao, Mengmeng Shi, Weijun Kong, Weishan Mu, Baoli Li, Jingyi Zhao, Chunli Zhao, Jing Jia, Jinxin Liu, Linchun Shi
Software Mentions: 1
Published: over 3 years ago
10.3389/fphys.2020.577237
Acacetin Ameliorates Experimental Colitis in Mice via Inhibiting Macrophage Inflammatory Response and Regulating the Composition of Gut Microbiota
Cited by: 26
Author(s): Junyu Ren, Bei Yue, Hao Wang, Beibei Zhang, Xiaoping Li, Zhilun Yu, Jing Zhang, Yueping Ren, Sridhar Mani, Zhengtao Wang, Wei Dou
Software Mentions: 1
Published: almost 4 years ago
10.3389/fphys.2017.00261
Integrated Analysis of DNA Methylation and mRNA Expression Profiles to Identify Key Genes in Severe Oligozoospermia
Cited by: 18
Author(s): Zhiming Li, Xuan Zhuang, Jinxiong Zeng, Chi-Meng Tzeng
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2021.655267
Characterization of Japanese Plum (Prunus salicina) PsMYB10 Alleles Reveals Structural Variation and Polymorphisms Correlating With Fruit Skin Color
Cited by: 13
Author(s): Arnau Fiol, Beatriz Ester García-Gómez, Federico Jurado-Ruiz, Konstantinos G. Alexiou, Werner Howad, María José Aranzana
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2013.00176
Gene divergence of homeologous regions associated with a major seed protein content QTL in soybean
Cited by: 21
Author(s): Puji Lestari, Kyujung Van, Jay Ern Lee, Yang Jae Kang, Suk-Ha Lee
Software Mentions: 1
Published: almost 12 years ago
10.3389/fpls.2020.554158
Postharvest Properties of Ultra-Late Maturing Peach Cultivars and Their Attributions to Melting Flesh (M) Locus: Re-evaluation of M Locus in Association With Flesh Texture
Cited by: 3
Author(s): Ryohei Nakano, Takashi Kawai, Yosuke Fukamatsu, Kagari Akita, Shuichi Watanabe, Takeshi Asano, Daisuke Takata, Mamoru Sato, Fumio Fukuda, Koichiro Ushijima
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2018.00013
Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population
Cited by: 17
Author(s): Felix Seifert, Alexander Thiemann, Robert Grant-Downton, Susanne Edelmann, Dominika Rybka, Tobias A. Schrag, Matthias Frisch, H. G. Dickinson, Albrecht E. Melchinger, Stefan Scholten
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2021.650109
Identification, Expression, and Interaction Analysis of Ovate Family Proteins in Populus trichocarpa Reveals a Role of PtOFP1 Regulating Drought Stress Response
Cited by: 1
Author(s): Hemeng Wang, Jin‐Gui Chen, Ying Chang
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2021.719889
Identification and Analysis of GhEXO Gene Family Indicated That GhEXO7_At Promotes Plant Growth and Development Through Brassinosteroid Signaling in Cotton (Gossypium hirsutum L.)
Cited by: 4
Author(s): Shengdong Li, Zhao Liu, Guoquan Chen, Ghulam Qanmber, Lili Lu, Jiaxin Zhang, Shuya Ma, Zuoren Yang, Fuguang Li
Software Mentions: 1
Published: about 3 years ago
10.3389/fpls.2017.00349
Genome-Wide Identification, Evolution, and Expression Analysis of the ATP-Binding Cassette Transporter Gene Family in Brassica rapa
Cited by: 29
Author(s): Chao Yan, Weike Duan, Shanwu Lyu, Ying Liu, Xilin Hou
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2020.536530
Identification of Candidate Auxin Response Factors Involved in Pomegranate Seed Coat Development
Cited by: 3
Author(s): Liang Yu, Chunyan Liu, Jiyu Li, Botao Jia, Xiaoxiao Qi, Ray Ming, Gaihua Qin
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2021.692628
High-Density Linkage Map Construction and QTL Identification in a Diploid Blueberry Mapping Population
Cited by: 14
Author(s): Xinpeng Qi, Elizabeth L. Ogden, Hamed Bostan, Daniel J. Sargent, J. A. Ward, Jessica Gilbert, Massimo Iorizzo, Lisa J. Rowland
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2016.01600
DArT Markers Effectively Target Gene Space in the Rye Genome
Cited by: 22
Author(s): Piotr Gawroński, Magdalena Pawełkowicz, Katarzyna Tofil, Grzegorz Uszyński, Saida Sharifova, Shivaksh Ahluwalia, Mirosław Tyrka, Maria Wędzony, Andrzej Kilian, Hanna Bolibok-Brągoszewska
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2021.608603
Characterization of Mungbean CONSTANS-LIKE Genes and Functional Analysis of CONSTANS-LIKE 2 in the Regulation of Flowering Time in Arabidopsis
Cited by: 12
Author(s): Chenyang Liu, Qianqian Zhang, Hong Zhu, Chunmei Cai, Shuai Li
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2015.00162
Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea
Cited by: 91
Author(s): Alice Kujur, Deepak Bajaj, Hari D. Upadhyaya, Shouvik Das, Rajeev Ranjan, Tanima Shree, Maneesha S. Saxena, Saurabh Badoni, Vinod Kumar, Shailesh Tripathi, C L L Gowda, Sunny Sharma, Sube Singh, Akhilesh K. Tyagi, Swarup K. Parida
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2017.00162
Comprehensive Analysis of the CDPK-SnRK Superfamily Genes in Chinese Cabbage and Its Evolutionary Implications in Plants
Cited by: 21
Author(s): Peng Wu, Wenli Wang, Weike Duan, Ying Li, Xilin Hou
Software Mentions: 1
Published: almost 8 years ago
10.3389/fpls.2014.00098
The genome sequence and effector complement of the flax rust pathogen Melampsora lini
Cited by: 104
Author(s): Adnane Nemri, Diane G. O. Saunders, Claire L. Anderson, Narayana M. Upadhyaya, Joe Win, Gregory J. Lawrence, David A. Jones, Sophien Kamoun, Jeffrey G. Ellis, Peter N. Dodds
Software Mentions: 1
Published: over 10 years ago
10.3389/fpls.2019.00592
Comparison Between Flat and Round Peaches, Genomic Evidences of Heterozygosity Events
Cited by: 12
Author(s): Qiuping Tan, Xiao Liu, Hongjiang Gao, Wei Xiao, Xiude Chen, Xiling Fu, Ling Li, Dongmei Li, Dongsheng Gao
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2016.01820
Characterization and Functional Analysis of Calmodulin and Calmodulin-Like Genes in Fragaria vesca
Cited by: 26
Author(s): Kai Zhang, Dingyi Yue, Wei Wei, Huanming Yang, Jiahao Feng, Zhirong Zou
Software Mentions: 1
Published: almost 8 years ago
10.3389/fpls.2020.00128
Genome-Wide Identification of the MdKNOX Gene Family and Characterization of Its Transcriptional Regulation in Malus domestica
Cited by: 21
Author(s): Peng Jia, Chenguang Zhang, Libo Xing, Youmei Li, Kamran Shah, Xia Zuo, Dong Zhang, Na An, Mingyu Han, Xiaolin Ren
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2020.01076
Illegitimate Recombination Between Homeologous Genes in Wheat Genome
Cited by: 9
Author(s): Chao Liu, Jinpeng Wang, Pengchuan Sun, Jigao Yu, Fanbo Meng, Zhikang Zhang, He Guo, Chendan Wei, Xinyu Li, Shaoqi Shen, Xiyin Wang
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2021.639431
Mapping and Analysis of a Novel Genic Male Sterility Gene in Watermelon (Citrullus lanatus)
Cited by: 5
Author(s): Wei Dong, Dewei Wu, Yan Chen, Defeng Wu
Software Mentions: 1
Published: about 3 years ago
10.3389/fpls.2016.01938
The tRNA-Derived Small RNAs Regulate Gene Expression through Triggering Sequence-Specific Degradation of Target Transcripts in the Oomycete Pathogen Phytophthora sojae
Cited by: 33
Author(s): Qinhu Wang, Tingting Li, Ke Xu, Wei Zhang, Xiaolong Wang, Junli Quan, Weibo Jin, Meixiang Zhang, Guangjin Fan, Ming-Bo Wang, Weixing Shan
Software Mentions: 1
Published: almost 8 years ago
10.3389/fpls.2016.00980
Genetic Linkage Map Construction and QTL Analysis of Two Interspecific Reproductive Isolation Traits in Sponge Gourd
Cited by: 18
Author(s): Haibin Wu, Xiaoli He, Hao Gong, Shuhong Luo, Mingzhu Li, Junqiu Chen, Changyuan Zhang, Ting Yu, Weiqiang Huang, Jianxun Luo
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2018.00856
Comparative Genomics, Whole-Genome Re-sequencing and Expression Profile Analysis of Nucleobase:Cation Symporter 2 (NCS2) Genes in Maize
Cited by: 5
Author(s): Wenxiang Chai, Xiaojian Peng, Bin Liu, Jing Wang, Zhan Zhi-Ming, Yin Liu, Kai Zhao, Beijiu Cheng, Weina Si, Haiyang Jiang
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2018.00047
Asymmetric Evolution and Expansion of the NAC Transcription Factor in Polyploidized Cotton
Cited by: 21
Author(s): Kai Fan, Feng Li, Jiahuan Chen, Zhaowei Li, Weiwei Lin, Size Cai, Jianping Liu
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2015.00736
Identification, isolation, and expression analysis of heat shock transcription factors in the diploid woodland strawberry Fragaria vesca
Cited by: 46
Author(s): Huanming Yang, Yujun Han, Wei Wei, Yajuan Li, Kai Zhang, Yurong Gao, Fengli Zhao, Jiahao Feng
Software Mentions: 1
Published: about 9 years ago
10.3389/fpls.2019.00513
Whole Genome Sequencing and Comparative Genomic Analysis Reveal Allelic Variations Unique to a Purple Colored Rice Landrace (Oryza sativa ssp. indica cv. Purpleputtu)
Cited by: 21
Author(s): V. B. Reddy Lachagari, Ravi Gupta, Sivarama Prasad Lekkala, Lakshmi Mahadevan, Boney Kuriakose, Navajeet Chakravartty, A. V. S. K. Mohan Katta, Sam Santhosh, A. R. Reddy, George Thomas
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2019.00711
Genetic Analysis and Transfer of Favorable Exotic QTL Alleles for Grain Yield Across D Genome Using Two Advanced Backcross Wheat Populations
Cited by: 5
Author(s): Ali Ahmad Naz, Said Dadshani, Agim Ballvora, Klaus Pillen, Jens Léon
Software Mentions: 1
Published: over 5 years ago
10.3389/fpls.2021.618984
Genome-Wide Identification and Low Temperature Responsive Pattern of Actin Depolymerizing Factor (ADF) Gene Family in Wheat (Triticum aestivum L.)
Cited by: 8
Author(s): Ke Xu, Yong Zhao, Sihang Zhao, Haodong Liu, Weiwei Wang, Shuhua Zhang, Xueju Yang
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2019.00034
Development of Stable Homozygous Wheat/Amblyopyrum muticum (Aegilops mutica) Introgression Lines and Their Cytogenetic and Molecular Characterization
Cited by: 18
Author(s): Julie King, Claire L. Newell, Surbhi Grewal, Stella Hubbart‐Edwards, Caiyun Yang, Duncan Scholefield, Stephen Ashling, Alex Stride, I. P. King
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2017.01470
Development of Highly Informative Genome-Wide Single Sequence Repeat Markers for Breeding Applications in Sesame and Construction of a Web Resource: SisatBase
Cited by: 27
Author(s): Komivi Dossa, Jingyin Yu, Boshou Liao, Ndiaga Cissé
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2014.00537
Flowering time control in European winter wheat
Cited by: 109
Author(s): Simon Langer, C. Friedrich H. Longin, Tobias Würschum
Software Mentions: 1
Published: about 10 years ago
10.3389/fpls.2020.580050
Genome-Wide Identification of lncRNAs Involved in Fertility Transition in the Photo-Thermosensitive Genic Male Sterile Rice Line Wuxiang S
Cited by: 10
Author(s): Ying Wang, Hongyuan Zhang, Qian Li, Jing Jin, Hao Chen, Yu Zeng, Xingguo Huang, Yi Ding
Software Mentions: 1
Published: almost 4 years ago
10.3389/fpls.2016.01362
A High-Resolution InDel (Insertion–Deletion) Markers-Anchored Consensus Genetic Map Identifies Major QTLs Governing Pod Number and Seed Yield in Chickpea
Cited by: 16
Author(s): Ram Srivastava, Mohar Singh, Deepak Bajaj, Swarup K. Parida
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2012.00297
Inferring the Brassica rapa Interactome Using Protein–Protein Interaction Data from Arabidopsis thaliana
Cited by: 16
Author(s): Jianhua Yang, Kim Osman, Mudassar Iqbal, Dov J. Stekel, Zewei Luo, Susan J. Armstrong, F. Christopher H. Franklin
Software Mentions: 1
Published: almost 12 years ago
10.3389/fpls.2021.697609
Analysis of Evolution, Expression and Genetic Transformation of TCP Transcription Factors in Blueberry Reveal That VcTCP18 Negatively Regulates the Release of Flower Bud Dormancy
Cited by: 9
Author(s): Yongqiang Li, Shuang An, Cheng Qian, Yu Zong, Wenrong Chen, Weidong Guo, Lu Zhang
Software Mentions: 1
Published: over 3 years ago
10.3389/fpls.2016.01361
Characterization of CIPK Family in Asian Pear (Pyrus bretschneideri Rehd) and Co-expression Analysis Related to Salt and Osmotic Stress Responses
Cited by: 24
Author(s): Jun Tang, Jing Lin, Hui Li, Yong Li, Qiyun Yang, Zong‐Ming Cheng, Chang YouHong
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2017.00397
Genomic, Molecular Evolution, and Expression Analysis of Genes Encoding Putative Classical AGPs, Lysine-Rich AGPs, and AG Peptides in Brassica rapa
Cited by: 8
Author(s): Tianyu Han, Heng Dong, Jie Cui, Ming Li, Sue Lin, Jiashu Cao, Li Huang
Software Mentions: 1
Published: over 7 years ago
10.3389/fpls.2016.00376
Evolutionary and Expression Analyses of the Apple Basic Leucine Zipper Transcription Factor Family
Cited by: 51
Author(s): Jiao Zhao, Rongrong Guo, Chunfang Guo, Hongmin Hou, Xiping Wang, Hua Gao
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2016.00577
MYB Transcription Factors in Chinese Pear (Pyrus bretschneideri Rehd.): Genome-Wide Identification, Classification, and Expression Profiling during Fruit Development
Cited by: 95
Author(s): Yunpeng Cao, Yuepeng Han, Dahui Li, Yi Lin, Yongping Cai
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2018.00266
Optimized Method of Extracting Rice Chloroplast DNA for High-Quality Plastome Resequencing and de Novo Assembly
Cited by: 19
Author(s): Takeshi Takamatsu, Marouane Baslam, Takuya Inomata, Kazusato Oikawa, Kazuyoshi Itoh, Takayuki Ohnishi, Tetsu Kinoshita, Toshiaki Mitsui
Software Mentions: 1
Published: over 6 years ago
10.3389/fpls.2018.01161
A High-Density Genetic Map of an Allohexaploid Brassica Doubled Haploid Population Reveals Quantitative Trait Loci for Pollen Viability and Fertility
Cited by: 14
Author(s): Su Yang, Sheng Chen, Kangni Zhang, Lan Li, Yafang Yin, Rafaqat Ali Gill, Guijun Yan, Jinling Meng, Wallace Cowling, Weijun Zhou
Software Mentions: 1
Published: about 6 years ago
10.3389/fpls.2020.00238
Characterization of the Tomato (Solanum lycopersicum) Pectin Methylesterases: Evolution, Activity of Isoforms and Expression During Fruit Ripening
Cited by: 18
Author(s): Bin Wen, Feng Zhang, Xilin Wu, Huan Li
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2016.01349
The Tomato Spotted Wilt Virus Genome Is Processed Differentially in its Plant Host Arachis hypogaea and its Thrips Vector Frankliniella fusca
Cited by: 15
Author(s): Stephen J. Fletcher, Anita Shrestha, Jonathan R. Peters, Bernard J. Carroll, Rajagopalbabu Srinivasan, H. R. Pappu, Neena Mitter
Software Mentions: 1
Published: about 8 years ago
10.3389/fpls.2014.00676
Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea
Cited by: 32
Author(s): Neha Gujaria-Verma, Sally Vail, Noelia Carrasquilla‐Garcia, R. Varma Penmetsa, Douglas R. Cook, Andrew Farmer, Albert Vandenberg, Kirstin E. Bett
Software Mentions: 1
Published: almost 10 years ago
10.3389/fpls.2017.00106
Genome-Wide Dissection of the Heat Shock Transcription Factor Family Genes in Arachis
Cited by: 27
Author(s): Pengfei Wang, Hui Song, Changsheng Li, Pengcheng Li, Aiqin Li, Hongshan Guan, Lei Hou, Xingjun Wang
Software Mentions: 1
Published: almost 8 years ago
10.3389/fpls.2016.01169
Identification of Sesame Genomic Variations from Genome Comparison of Landrace and Variety
Cited by: 41
Author(s): Xin Wei, Xiaodong Zhu, Jingyin Yu, Linhai Wang, Yanxin Zhang, Donghua Li, Rong Zhou, Xiurong Zhang
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2020.532211
Genomic Characterization of the Japanese Indigenous Wine Grape Vitis sp. cv. Koshu
Cited by: 4
Author(s): Keisuke Tanaka, Yu Hamaguchi, Shunji Suzuki, Shinichi Enoki
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2018.00021
Genomic Sequencing of Japanese Plum (Prunus salicina Lindl.) Mutants Provides a New Model for Rosaceae Fruit Ripening Studies
Cited by: 18
Author(s): Angel V. Fernández i Martí, Christopher Saski, George A. Manganaris, Ksenija Gašić, Carlos H. Crisosto
Software Mentions: 1
Published: almost 7 years ago
10.1186/gb-2011-12-9-r94
Comparison of solution-based exome capture methods for next generation sequencing
Cited by: 246
Author(s): Anna-Maija Sulonen, Pekka Ellonen, Henrikki Almusa, Maija Lepistö, Samuli Eldfors, Sari Hannula, Timo Miettinen, Henna Tyynismaa, Perttu Salo, Caroline A. Heckman, Heikki Joensuu, Taneli Raivio, Anu Suomalainen, Janna Saarela
Software Mentions: 1
Published: almost 14 years ago
10.1186/gb-2012-13-9-r48
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
Cited by: 235
Author(s): Kevin Y. Yip, Chao Cheng, Nitin Bhardwaj, James Brown, Jing Leng, Anshul Kundaje, Joel Rozowsky, Ewan Birney, Peter J. Bickel, M Snyder, Mark Gerstein
Software Mentions: 1
Published: almost 13 years ago
10.1186/gb-2013-14-11-r126
Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
Cited by: 81
Author(s): Miriam Ragle Aure, Suvi‐Katri Leivonen, Thomas Fleischer, Qi Zhu, Jens Overgaard, Jan Alsner, Trine Tramm, Riku Louhimo, Grethe I.G. Alnæs, Merja Perälä, Florence Busato, Nizar Touleimat, Jörg Tost, Anne‐Lise Børresen‐Dale, Sampsa Hautaniemi, Olga G. Troyanskaya, Ole Christian Lingjærde, Kristine Kleivi Sahlberg, Vessela N. Kristensen
Software Mentions: 1
Published: almost 12 years ago
10.1186/s13059-018-1458-5
A large-scale whole-genome sequencing analysis reveals highly specific genome editing by both Cas9 and Cpf1 (Cas12a) nucleases in rice
Cited by: 200
Author(s): Xu Tang, Guanqing Liu, Jianping Zhou, Qiao Ren, Qi You, Li Tian, Xuhui Xin, Zhiyong Zhong, Binglin Liu, Xuelian Zheng, Dengwei Zhang, Aimee Malzahn, Zhiyun Gong, Yiping Qi, Tao Zhang, Yong Zhang
Software Mentions: 1
Published: over 6 years ago
10.1093/gbe/evu037
Ancient Gene Duplicates in Gossypium (Cotton) Exhibit Near-Complete Expression Divergence
Cited by: 60
Author(s): Simon Renny‐Byfield, Joseph P. Gallagher, Corrinne E. Grover, Emmanuel Szadkowski, Justin T. Page, Joshua A. Udall, Xiyin Wang, Andrew H. Paterson, Jonathan F. Wendel
Software Mentions: 1
Published: almost 11 years ago
10.1093/gbe/evu175
Genomic Signatures of Distributive Conjugal Transfer among Mycobacteria
Cited by: 38
Author(s): Tatum D Mortimer, Caitlin S. Pepperell
Software Mentions: 1
Published: about 10 years ago
10.1093/gbe/evu201
Genomic Evolution of Saccharomyces cerevisiae under Chinese Rice Wine Fermentation
Cited by: 27
Author(s): Yudong Li, Weiping Zhang, Dao-Qiong Zheng, Zhan Zhou, Wenwen Yu, Lei Zhang, Lei Feng, Xinmiao Liang, Wenjun Guan, Jingwen Zhou, Jian Chen, Zhenguo Lin
Software Mentions: 1
Published: about 10 years ago
10.1093/gbe/evu222
Comparative Genomics Reveals Multiple Genetic Backgrounds of Human Pathogenicity in the Trypanosoma brucei Complex
Cited by: 37
Author(s): Mark Sistrom, Benjamin R. Evans, Robert Bjornson, Wendy Gibson, Oliver Balmer, Pascal Mäser, Serap Aksoy, Adalgisa Caccone
Software Mentions: 1
Published: about 10 years ago
10.1093/gbe/evu262
Genomic Diversification in Strains of Rickettsia felis Isolated from Different Arthropods
Cited by: 66
Author(s): Joseph J. Gillespie, Timothy Driscoll, Victoria I. Verhoeve, Tadanobu Utsuki, Claudia Husseneder, Vladimir N. Chouljenko, Abdu F. Azad, Kevin R. Macaluso
Software Mentions: 1
Published: almost 10 years ago
10.1093/gbe/evv092
Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity
Cited by: 76
Author(s): Jana Sperschneider, Donald M. Gardiner, Louise F. Thatcher, Rebecca Lyons, Karam B. Singh, John M. Manners, Jennifer Taylor
Software Mentions: 1
Published: over 9 years ago
10.1093/gbe/evz006
An Annotated Genome for <i>Haliotis rufescens</i> (Red Abalone) and Resequenced Green, Pink, Pinto, Black, and White Abalone Species
Cited by: 32
Author(s): Rick E. Masonbrink, Catherine Purcell, Sara E. Boles, Andrew Whitehead, John R. Hyde, Arun S. Seetharam, Andrew J. Severin
Software Mentions: 1
Published: almost 6 years ago
10.1093/gbe/evab177
Ancestral Physical Stress and Later Immune Gene Family Expansions Shaped Bivalve Mollusc Evolution
Cited by: 10
Author(s): Tim Regan, Lewis Stevens, Carolina Peñaloza, Ross D. Houston, Diego Robledo, Tim P. Bean
Software Mentions: 1
Published: over 3 years ago
10.1186/s13073-015-0164-0
Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
Cited by: 299
Author(s): Francesc Español i Coll, Ruth McNerney, Mark D. Preston, José Afonso Guerra-Assunção, Andrew Warry, Grant A. Hill-Cawthorne, Kim Mallard, Mridul Nair, Armandina Miranda, Adriana Alves, João Perdigão, Miguel Viveiros, Isabel Portugal, Zahra Hasan, Rumina Hasan, Judith R. Glynn, Nigel Martin, Arnab Pain, Taane G. Clark
Software Mentions: 1
Published: over 9 years ago
10.1186/s13073-017-0399-z
Molecular dissection of germline chromothripsis in a developmental context using patient-derived iPS cells
Cited by: 21
Author(s): Sjors Middelkamp, Sebastiaan van Heesch, Arie Koen Braat, Joep de Ligt, Maarten van Iterson, Marieke Simonis, Markus J. van Roosmalen, Martijn J. E. Kelder, Evelien Kruisselbrink, Ron Hochstenbach, Nienke E. Verbeek, Elly F. Ippel, Youri Adolfs, R. Jeroen Pasterkamp, Wigard P. Kloosterman, Ewart Kuijk, Edwin Cuppen
Software Mentions: 1
Published: almost 8 years ago
10.1016/j.gpb.2020.05.002
MosaicBase: A Knowledgebase of Postzygotic Mosaic Variants in Noncancer Disease-related and Healthy Human Individuals
Cited by: 8
Author(s): Xiaoxu Yang, Chengliang Yang, Xianing Zheng, Luoxing Xiong, Yu‐Tian Tao, Meng Wang, Adam Yongxin Ye, Qixi Wu, Yanmei Dou, Junyu Luo, Liping Wei, August Yue Huang
Software Mentions: 1
Published: over 4 years ago
10.1186/2047-217X-3-19
iReport: a generalised Galaxy solution for integrated experimental reporting
Cited by: 4
Author(s): Saskia Hiltemann, Youri Hoogstrate, Peter van der Spek, Guido Jenster, Andrew Stubbs
Software Mentions: 1
Published: about 10 years ago
10.1186/2047-217X-1-14
A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education
Cited by: 41
Author(s): Tarás K. Oleksyk, Jean‐François Pombert, Daniel Siu, Anyi Mazo‐Vargas, Brian P. Ramos, Wilfried Guiblet, Yashira Afanador, Christina Ruiz-Rodriguez, Michael L. Nickerson, David M. Logue, Michael Dean, L. Figueroa, Ricardo Valentin, Juan-Carlos Martinez-Cruzado
Software Mentions: 1
Published: about 12 years ago
10.1093/gigascience/giz038
De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing
Cited by: 23
Author(s): Ruby Dhar, Ashikh Seethy, Karthikeyan Pethusamy, Sunil Kumar Singh, Vishwajeet Rohil, Kakali Purkayastha, Indrani Mukherjee, Sandeep Goswami, Rakesh Singh, Ankita Raj, Tryambak Srivastava, Sovon Acharya, Balaji Rajashekhar, Subhradip Karmakar
Software Mentions: 1
Published: over 5 years ago
10.1093/gigascience/giz063
A chromosome-scale assembly of the major African malaria vector Anopheles funestus
Cited by: 44
Author(s): Jay Ghurye, Sergey Koren, Scott T. Small, Seth Redmond, Paul Howell, Adam M. Phillippy, Nora J. Besansky
Software Mentions: 1
Published: over 5 years ago
10.1093/gigascience/giaa020
Chromosome-level genome assembly of Aldrichina grahami, a forensically important blowfly
Cited by: 3
Author(s): Fanming Meng, Zhuoying Liu, Han Han, Dmitrijs Finkelbergs, Yangshuai Jiang, Mingfei Zhu, Yang Wang, Zongyi Sun, Chao Chen, Yadong Guo, Jifeng Cai
Software Mentions: 1
Published: over 4 years ago
10.1093/gigascience/giaa092
Chromosome-level genome assembly of the female western mosquitofish (Gambusia affinis)
Cited by: 5
Author(s): Feng Shao, Arne Ludwig, Yang Mao, Geoffrey Liu, Zuogang Peng
Software Mentions: 1
Published: over 4 years ago
10.1093/gigascience/giaa099
Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
Cited by: 10
Author(s): Damien Courtine, Jan Provazník, Jérôme Reboul, Guillaume Blanc, Vladimír Beneš, Jonathan J. Ewbank
Software Mentions: 1
Published: about 4 years ago
10.1186/s13099-014-0040-2
Genome sequencing and genomic characterization of a tigecycline-resistant Klebsiella pneumoniae strain isolated from the bile samples of a cholangiocarcinoma patient
Cited by: 14
Author(s): Beiwen Zheng, Ang Li, Xin Jiang, Xinjun Hu, Jian Yao, Lina Zhao, Jinru Ji, Min Ye, Yonghong Xiao
Software Mentions: 1
Published: about 10 years ago
10.1186/s13099-015-0059-z
Draft genomes of four enterotoxigenic Escherichia coli (ETEC) clinical isolates from China and Bangladesh
Cited by: 5
Author(s): Fei Liu, Xi Yang, Zhiyun Wang, Matilda Nicklasson, Firdausi Qadri, Yi Yao, Yezi Zhu, Na Lv, Jing Li, Ruifen Zhang, Huijuan Guo, Baoli Zhu, Åsa Sjöling, Yongfei Hu
Software Mentions: 1
Published: over 9 years ago
10.1186/s13099-017-0156-2
Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea
Cited by: 3
Author(s): Taesoo Kwon, Won Kim, Seung-Hak Cho
Software Mentions: 1
Published: almost 8 years ago