10.3390/jcm9041011

Preclinical Models: Boosting Synergies for Improved Translation
Cited by: 0
Author(s): Chiara Attanasio, Mara Sangiovanni
Software Mentions: 1
Published: over 5 years ago

10.3390/jcm10020312

Attenuated Resting-State Functional Anticorrelation between Attention and Executive Control Networks in Schizotypal Personality Disorder
Cited by: 3
Author(s): Ji-Won Hur, Taekwan Kim, Kang Ik K. Cho, Jun Soo Kwon
Software Mentions: 1
Published: almost 5 years ago

10.1155/2019/2893041

Metagenomics and Faecal Metabolomics Integrative Analysis towards the Impaired Glucose Regulation and Type 2 Diabetes in Uyghur-Related Omics
Cited by: 20
Author(s): Rebiya Nuli, Jureti Azhati, Junxiu Cai, Aizhatiguli Kadeer, Bing Zhang, Patamu Mohemaiti
Software Mentions: 1
Published: almost 6 years ago

10.1093/jxb/eru007

Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family
Cited by: 209
Author(s): Chunfang Guo, Rongrong Guo, Xiaozhao Xu, Min Gao, Xiaoqin Li, Junyang Song, Yi Zheng, Xiping Wang
Software Mentions: 1
Published: over 11 years ago

10.1093/jxb/erv420

Identification, evolution, and expression partitioning of miRNAs in allopolyploid<i>Brassica napus</i>
Cited by: 42
Author(s): Enhui Shen, Jun Zou, Falk Hubertus Behrens, Li Chen, Chu-Yu Ye, Shutao Dai, Ruiyan Li, Meng Ni, Xiaoxue Jiang, Jie Qiu, Yang Liu, Weidi Wang, Qian Zhu, Boulos Chalhoub, Ian Bancroft, Jinling Meng, Daguang Cai, Longjiang Fan
Software Mentions: 1
Published: about 10 years ago

10.1093/jxb/ery219

Genome-wide identification of the GhARF gene family reveals that GhARF2 and GhARF18 are involved in cotton fibre cell initiation
Cited by: 40
Author(s): Gao Xiao, Peng He, Peng Zhao, Hao Líu, Li Zhang, Chaoyou Pang, Jun Yu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1003204

Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum
Cited by: 66
Author(s): Jeffrey A. Kimbrel, William J. Thomas, Yuan Jiang, Allison Creason, Caitlin A. Thireault, Joel Sachs, Jeff H. Chang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004194

IscR Is Essential for Yersinia pseudotuberculosis Type III Secretion and Virulence
Cited by: 52
Author(s): Halie K. Miller, Laura Kwuan, Leah Schwiesow, David L. Bernick, Erin L. Mettert, Hector A. Ramirez, James Matthew Ragle, Patricia P. Chan, Patricia J. Kiley, Todd M. Lowe, Victoria Auerbuch
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1004600

Reprogramming of Yersinia from Virulent to Persistent Mode Revealed by Complex In Vivo RNA-seq Analysis
Cited by: 65
Author(s): Kemal Avican, Anna Fahlgren, Mikael Huss, Ann Kathrin Heroven, Michael Beckstette, Petra Dersch, Maria Fällman
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1005957

Dissemination and Mechanism for the MCR-1 Colistin Resistance
Cited by: 189
Author(s): Rui Gao, Yongfei Hu, Zhencui Li, Jian Sun, Qingjing Wang, Jingxia Lin, Huiyan Ye, Fei Liu, Swaminath Srinivas, Defeng Li, Baoli Zhu, Yahong Liu, Guo‐Bao Tian, Youjun Feng
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1007438

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci
Cited by: 66
Author(s): Taj Azarian, Patrick K. Mitchell, Maria Georgieva, Claudette M. Thompson, Amel Ghouila, Andrew J. Pollard, Anne von Gottberg, Mignon du Plessis, Martín Antonio, Brenda Kwambana-Adams, Stuart C. Clarke, Dean Everett, Jennifer Cornick, Ewa Sadowy, Waleria Hryniewicz, Anna Skoczyńska, Jennifer C. Moïsi, Lesley McGee, Bernard Beall, Benjamin J. Metcalf, Robert F. Breiman, Pei Ho, Raymond Reid, Katherine L. O’Brien, Rebecca A. Gladstone, Stephen D. Bentley, William P. Hanage
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1007486

Heme sensing and detoxification by HatRT contributes to pathogenesis during Clostridium difficile infection
Cited by: 32
Author(s): Reece J. Knippel, Joseph P. Zackular, Jessica L. Moore, Arianna I. Celis, Amy L. Weiss, Mary Kay Washington, Jennifer L. DuBois, Richard M. Caprioli, Eric P. Skaar
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1008298

Pathogen to commensal? Longitudinal within-host population dynamics, evolution, and adaptation during a chronic &gt;16-year Burkholderia pseudomallei infection
Cited by: 11
Author(s): Talima Pearson, Jason W. Sahl, Crystal M. Hepp, Karthik Handady, Heidie Hornstra, Adam J. Vazquez, Erik W. Settles, Mark Mayo, Mirjam Kaestli, Charles H. D. Williamson, Erin P. Price, Derek S. Sarovich, James M. Cook, Spenser R. Wolken, Richard A. Bowen, Apichai Tuanyok, Jeffrey T. Foster, Kevin P. Drees, Timothy J. Kidd, Scott C. Bell, Bart J. Currie, Paul Keim
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2005198117

Heterologous microProtein expression identifies LITTLE NINJA, a dominant regulator of jasmonic acid signaling
Cited by: 14
Author(s): Suk‐Yoon Hong, Bin Sun, Daniel Straub, Anko Blaakmeer, Lorenzo Mineri, Jonas Koch, Henrik Brinch-Pedersen, Inger Bæksted Holme, Meike Burow, Hans Jørgen Lyngs Jørgensen, Mar Albà, Stephan Wenkel
Software Mentions: 1
Published: about 5 years ago

10.1016/j.redox.2019.101247

RedoxiBase: A database for ROS homeostasis regulated proteins
Cited by: 61
Author(s): Bruno Savelli, Qiang Li, Mark Webber, Achraf M Jemmat, Alexis Robitaille, Marcel Zámocký, Catherine Mathé, Christophe Dunand
Software Mentions: 1
Published: about 6 years ago

10.1155/2020/6312480

Deep Functional and Molecular Characterization of a High-Risk Undifferentiated Pleomorphic Sarcoma
Cited by: 4
Author(s): Noah Berlow, Catherine S. Grasso, Michael J. Quist, Mingshan Cheng, Regina Gandour‐Edwards, Brian Hernandez, Joel E. Michalek, Christopher W. Ryan, Paul T. Spellman, Ranadip Pal, Lynn Million, Mark Renneker, Charles Keller
Software Mentions: 1
Published: over 5 years ago

10.1038/srep08642

Comparative genome analysis reveals the molecular basis of nicotine degradation and survival capacities of Arthrobacter
Cited by: 28
Author(s): Yuxiang Yao, Hongzhi Tang, Fei Su, Ping Xu
Software Mentions: 1
Published: over 10 years ago

10.1038/srep09264

A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea
Cited by: 60
Author(s): Deepak Bajaj, Hari D. Upadhyaya, Yusuf Khan, Shouvik Das, Saurabh Badoni, Tanima Shree, Vinod Kumar, Shailesh Tripathi, C L L Gowda, Sube Singh, S. B. Sharma, Akhilesh K. Tyagi, Debasis Chattopdhyay, Swarup K. Parida
Software Mentions: 1
Published: over 10 years ago

10.1038/srep10763

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides
Cited by: 26
Author(s): Bala Anı Akpınar, Meral Yüce, Stuart J. Lucas, Jan Vrána, Veronika Burešová, Jaroslav Doležel, Hikmet Budak
Software Mentions: 1
Published: over 10 years ago

10.1038/srep12468

Genome-wide high-throughput SNP discovery and genotyping for understanding natural (functional) allelic diversity and domestication patterns in wild chickpea
Cited by: 57
Author(s): Deepak Bajaj, Shouvik Das, Saurabh Badoni, Vinod Kumar, Mohar Singh, Kailash C. Bansal, Akhilesh K. Tyagi, Swarup K. Parida
Software Mentions: 1
Published: over 10 years ago

10.1038/srep12478

VaccineDA: Prediction, design and genome-wide screening of oligodeoxynucleotide-based vaccine adjuvants
Cited by: 30
Author(s): Gandharva Nagpal, Sudheer Gupta, Kumardeep Chaudhary, Sandeep Kumar Dhanda, Satya Prakash, Gajendra P. S. Raghava
Software Mentions: 1
Published: over 10 years ago

10.1038/srep13090

Genome-wide DNA polymorphisms in low Phosphate tolerant and sensitive rice genotypes
Cited by: 20
Author(s): Poonam Mehra, Bharati Pandey, Jitender Giri
Software Mentions: 1
Published: about 10 years ago

10.1038/srep13387

High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea
Cited by: 40
Author(s): Rashmi Gaur, Ganga Jeena, Neelima Shah, Shefali Gupta, Seema Pradhan, Akhilesh K. Tyagi, Mukesh Jain, Debasis Chattopadhyay, Sabhyata Bhatia
Software Mentions: 1
Published: about 10 years ago

10.1038/srep13892

Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis
Cited by: 45
Author(s): Yang Li, Xiaodi Hu, Runqiang Yang, Tom Hsiang, Ke Wang, Dequan Liang, Fan Liang, De-Min Cao, Fan Zhou, Guangwu Wen, Yi‐Jian Yao
Software Mentions: 1
Published: about 10 years ago

10.1038/srep14600

Obesity changes the human gut mycobiome
Cited by: 180
Author(s): Marina Rodríguez, Daniel Catalá Pérez, Felipe Javier Chaves, Eduardo Esteve, Pablo Marín-Garcia, Gemma Xifra, Joan Vendrell, Mariona Jové, Reinald Pamplona, Wifredo Ricart, Manuel Portero‐Otín, Matilde R. Chacón, José Manuel Fernández-Real
Software Mentions: 1
Published: about 10 years ago

10.1038/srep15377

High variability of genomic instability and gene expression profiling in different HeLa clones
Cited by: 66
Author(s): Annalisa Frattini, Marco Fabbri, Roberto Valli, Elena De Paoli, Giuseppe Montalbano, Laura Gribaldo, Francesco Pasquali, Emanuela Maserati
Software Mentions: 1
Published: about 10 years ago

10.1038/srep16358

Construction of a high-density linkage map and fine mapping of QTL for growth in Asian seabass
Cited by: 83
Author(s): Le Wang, Zi Yi Wan, Bin Bai, Shu Qing Huang, Elaine Chua, May Lee, Hong Yan Pang, Yan Wen, Peng Liu, Feng Liu, Fei Sun, Grace Lin, Bao Qing Ye, Gen Hua Yue
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep17512

High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS)
Cited by: 114
Author(s): Subodh Verma, Shefali Gupta, Nitesh Bandhiwal, Tapan Kumar, Chellapilla Bharadwaj, Sabhyata Bhatia
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep18611

Comparative transcriptome analysis of different chemotypes elucidates withanolide biosynthesis pathway from medicinal plant Withania somnifera
Cited by: 35
Author(s): Parul Gupta, Ridhi Goel, Aishwarya Agarwal, Mehar Hasan Asif, Neelam S. Sangwan, Rajender Singh Sangwan, Prabodh Kumar Trivedi
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep18330

Global insights into acetic acid resistance mechanisms and genetic stability of Acetobacter pasteurianus strains by comparative genomics
Cited by: 40
Author(s): Bin Wang, Yanchun Shao, Tao Chen, Wanping Chen, Fusheng Chen
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep18973

Genome-wide identification of calcium-dependent protein kinases in soybean and analyses of their transcriptional responses to insect herbivory and drought stress
Cited by: 39
Author(s): Christian Hettenhausen, Guiling Sun, Yuanhuizi He, Zhuang Hu, Ting Sun, Jinfeng Qi, Jianqiang Wu
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep19237

Global Transcriptomic Analysis of Interactions between Pseudomonas aeruginosa and Bacteriophage PaP3
Cited by: 38
Author(s): Xia Zhao, Canhuang Chen, Wei Shen, Guangtao Huang, Shuai Le, Shuguang Lu, Ming Li, Yan Zhao, Jing Wang, Xiancai Rao, Gang Li, Mengyu Shen, Keke Guo, Yuhui Yang, Yinling Tan, Fuquan Hu
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep23072

Identification and characterisation of Dof transcription factors in the cucumber genome
Cited by: 61
Author(s): Changlong Wen, Qing Cheng, Liqun Zhao, Aijun Mao, Jingjing Yang, Shaohua Yu, Yiqun Weng, Yong Xu
Software Mentions: 1
Published: over 9 years ago

10.1038/srep24124

Genetic architecture and mechanism of seed number per pod in rapeseed: elucidated through linkage and near-isogenic line analysis
Cited by: 28
Author(s): Yuhua Yang, Jiaqin Shi, Xinfa Wang, Guihua Liu, Hanzhong Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep24638

Draft genome sequencing and secretome analysis of fungal phytopathogen Ascochyta rabiei provides insight into the necrotrophic effector repertoire
Cited by: 44
Author(s): Sandhya Verma, Rajesh Kumar Gazara, Shadab Nizam, Sabiha Parween, Debasis Chattopadhyay, Praveen Kumar Verma
Software Mentions: 1
Published: over 9 years ago

10.1038/srep24519

Detection and characterization of two co-infection variant strains of avian orthoreovirus (ARV) in young layer chickens using next-generation sequencing (NGS)
Cited by: 22
Author(s): Yi Tang, Lin Lin, Aswathy Sebastian, Huaguang Lu
Software Mentions: 1
Published: over 9 years ago

10.1038/srep25006

Genome-wide non-CpG methylation of the host genome during M. tuberculosis infection
Cited by: 50
Author(s): Garima Sharma, Divya Tej Sowpati, Prakruti R Singh, Mehak Zahoor Khan, Rakesh Ganji, Sandeep Upadhyay, Sharmistha Banerjee, Vinay Kumar Nandicoori, Sanjeev Khosla
Software Mentions: 1
Published: over 9 years ago

10.1038/srep29044

Genome-wide characterization of the β-1,3-glucanase gene family in Gossypium by comparative analysis
Cited by: 17
Author(s): Xiaoyang Xu, Yue Feng, Shuai Fang, Jingying Xu, Xinyu Wang, Wangzhen Guo
Software Mentions: 1
Published: over 9 years ago

10.1038/srep30042

Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives
Cited by: 48
Author(s): Maria D. Logacheva, Mikhail I. Schelkunov, Victoria Shtratnikova, Maria V. Matveeva, Aleksey A. Penin
Software Mentions: 1
Published: over 9 years ago

10.1038/srep32437

Genomic and transcriptomic analyses of the tangerine pathotype of Alternaria alternata in response to oxidative stress
Cited by: 44
Author(s): Mingshuang Wang, Xuepeng Sun, Dongliang Yu, Jianping Xu, Kuang‐Ren Chung, Hongye Li
Software Mentions: 1
Published: about 9 years ago

10.1038/srep32522

Characterizing the International Migration Barriers with a Probabilistic Multilateral Migration Model
Cited by: 10
Author(s): Xiaomeng Li, Hongzhong Xu, Jiawei Chen, Qinghua Chen, Jiang Zhang, Zengru Di
Software Mentions: 1
Published: about 9 years ago

10.1038/srep35245

Identification of lipoxygenase (LOX) genes from legumes and their responses in wild type and cultivated peanut upon Aspergillus flavus infection
Cited by: 40
Author(s): Hui Song, Pengfei Wang, Changsheng Li, Soohee Han, Javier López-Baltazar, Xinyou Zhang, Xingjun Wang
Software Mentions: 1
Published: about 9 years ago

10.1038/srep36089

Mitochondrial genomes and comparative genomics of Aphanomyces astaci and Aphanomyces invadans
Cited by: 18
Author(s): Jenny Makkonen, Arto Vesterbacka, Frank N. Martin, Japo Jussila, Javier Diéguez-Uribeondo, Raine Kortet, Hanna Kokko
Software Mentions: 1
Published: about 9 years ago

10.1038/srep36971

Mutation tendency of mutator Plasmodium berghei with proofreading-deficient DNA polymerase δ
Cited by: 11
Author(s): Hajime Honma, Mamoru Niikura, Fuminori Kobayashi, Toshihiro Horii, Toshihiro Mita, Hiroyoshi Endo, Makoto Hirai
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep40976

Genome and transcriptome analysis of surfactin biosynthesis in Bacillus amyloliquefaciens MT45
Cited by: 79
Author(s): Yan Zhi, Qun Wu, Yan Xu
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep41230

Change in microbial community in landfill refuse contaminated with antibiotics facilitates denitrification more than the increase in ARG over long-term
Cited by: 30
Author(s): Dong Wu, Guanzhou Chen, Xiaojun Zhang, Kai Yang, Bing Xie
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep45711

Genome-wide identification of membrane-bound fatty acid desaturase genes in Gossypium hirsutum and their expressions during abiotic stress
Cited by: 27
Author(s): Jijun Feng, Yuchen Dong, Wei Liu, Qiuling He, M. K. Daud, Jinhong Chen, Shuijin Zhu
Software Mentions: 1
Published: over 8 years ago

10.1038/srep45754

Identification of conserved proteins from diverse shell matrix proteome in Crassostrea gigas: characterization of genetic bases regulating shell formation
Cited by: 50
Author(s): Dandan Feng, Qi Li, Hong Yu, Lingfeng Kong, Shao Jun Du
Software Mentions: 1
Published: over 8 years ago

10.1038/srep09468

Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea
Cited by: 72
Author(s): Alice Kujur, Hari D. Upadhyaya, Tanima Shree, Deepak Bajaj, Shouvik Das, Maneesha S. Saxena, Saurabh Badoni, Vinod Kumar, Shailesh Tripathi, C L L Gowda, S. B. Sharma, Sube Singh, Akhilesh K. Tyagi, Swarup K. Parida
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-00694-8

Evolution of full-length genomes of HBV quasispecies in sera of patients with a coexistence of HBsAg and anti-HBs antibodies
Cited by: 17
Author(s): Taicheng Zhou, Xiao Li, Long Li, Xiaofei Li, Liang Zhang, Jia Wei
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-01082-y

Elucidation of quantitative structural diversity of remarkable rearrangement regions, shufflons, in IncI2 plasmids
Cited by: 34
Author(s): Tsuyoshi Sekizuka, Michihiro Kawanishi, Mamoru Ohnishi, Ayaka Shima, Kengo Kato, Akifumi Yamashita, Mari Matsui, Satowa Suzuki, Makoto Kuroda
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-02364-1

Age-related penetrance of the C9orf72 repeat expansion
Cited by: 91
Author(s): Natalie A. Murphy, Karissa C. Arthur, Pentti J. Tienari, Henry Houlden, Adriano Chiò, Bryan J. Traynor
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-01857-3

Massive expansion and differential evolution of small heat shock proteins with wheat (Triticum aestivum L.) polyploidization
Cited by: 14
Author(s): Xiaoming Wang, Ruochen Wang, Chuang Ma, Song Xue, Zhenshan Liu, Zhonghua Wang, Qixin Sun, Jun Cao, Shengbao Xu
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-03330-7

Genome-wide mapping and characterization of microsatellites in the swamp eel genome
Cited by: 22
Author(s): Zhigang Li, Feng Chen, Chunhua Huang, Weiran Zheng, Chunlai Yu, Hanhua Cheng, Rongjia Zhou
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-04004-0

Genome-wide identification and characterization of genes involved in carotenoid metabolic in three stages of grapevine fruit development
Cited by: 35
Author(s): Xiangpeng Leng, Peipei Wang, Chen Wang, Xudong Zhu, Xiaopeng Li, Hongyan Li, Qian Mei, Ao Li, Zhongjie Liu, Jinggui Fang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-04833-z

Mitogenomic analyses support the recent division of the genus Orthotrichum (Orthotrichaceae, Bryophyta)
Cited by: 30
Author(s): Jakub Sawicki, Vítězslav Plášek, Ryszard Ochyra, Monika Szczecińska, Monika Ślipiko, Kamil Myszczyński, Tomasz Kulik
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-06160-9

Comparative genomic analysis of Paenibacillus sp. SSG-1 and its closely related strains reveals the effect of glycometabolism on environmental adaptation
Cited by: 8
Author(s): Hui Xu, Siyu Qin, Yanhong Lan, Mengjia Liu, Xiyue Cao, Dan Qiao, Yu Cao, Yi Cao
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-09397-6

Transcriptomic, biochemical and physio-anatomical investigations shed more light on responses to drought stress in two contrasting sesame genotypes
Cited by: 56
Author(s): Komivi Dossa, Donghua Li, Linhai Wang, Xiaomin Zheng, Aili Liu, Jingyin Yu, Xin Wei, Rong Zhou, Daniel Foncéka, Diaga Diouf, Boshou Liao, Ndiaga Cissé
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-10432-9

Mutational heterogeneity in non-serous ovarian cancers
Cited by: 35
Author(s): Jamie K. Teer, Sean Yoder, Anxhela Gjyshi, Santo V. Nicosia, Chaomei Zhang, Alvaro N.A. Monteiro
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-12988-y

Genome-wide identification and expression analyses of the homeobox transcription factor family during ovule development in seedless and seeded grapes
Cited by: 22
Author(s): Yunduan Li, Yanxun Zhu, Jin Yao, Songlin Zhang, Li Wang, Chunfang Guo, Steve van Nocker, Xiping Wang
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-13216-3

A high-density linkage map and QTL mapping of fruit-related traits in pumpkin (Cucurbita moschata Duch.)
Cited by: 31
Author(s): Yang Zhong, Yalin Zhou, Junxing Li, Ting Yu, Tianbin Wu, Jianxun Luo, Shuhong Luo, Hexun Huang
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-12301-x

Global trade statistics lack granularity to inform traceability and management of diverse and high-value fishes
Cited by: 28
Author(s): Donna‐Mareè Cawthorn, Stefano Mariani
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-12970-8

Quantifying the relative immune cell activation from whole tissue/organ-derived differentially expressed gene data
Cited by: 5
Author(s): Edward Wijaya, Yoshinobu Igarashi, Noriyuki Nakatsu, Yasunari Haseda, Joël Billaud, Yi‐An Chen, Kenji Mizuguchi, Hiroshi Yamada, Ken J. Ishii, Taiki Aoshi
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-12901-7

Improving membrane protein expression and function using genomic edits
Cited by: 27
Author(s): Heather M. Jensen, Thomas Eng, Victor Chubukov, Robin A. Herbert, Aindrila Mukhopadhyay
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-13808-z

Insertion sequence polymorphism and genomic rearrangements uncover hidden Wolbachia diversity in Drosophila suzukii and D. subpulchrella
Cited by: 13
Author(s): Rupinder Kaur, Stefanos Siozios, Wolfgang J. Miller, Omar Rota‐Stabelli
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-15169-z

The first draft reference genome of the American mink (Neovison vison)
Cited by: 15
Author(s): Zexi Cai, Bent Petersen, Goutam Sahana, Lone Bruhn Madsen, Knud Larsen, Bo Thomsen, Christian Berthou, Mogens Sandø Lund, Bernt Guldbrandtsen, Frank Panitz
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-017-17845-6

Cell Cycle Model System for Advancing Cancer Biomarker Research
Cited by: 7
Author(s): Iulia M. Lazar, Ina Hoeschele, Juliana de Morais, Milagros J. Tenga
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-19169-5

Genome and secretome analysis of Pochonia chlamydosporia provide new insight into egg-parasitic mechanisms
Cited by: 18
Author(s): Runmao Lin, F. Xiao-Feng Qin, Baoming Shen, Qianqian Shi, Chichuan Liu, Xi Zhang, Yang Jiao, Jun Lü, Yaoyao Gao, Marta Suarez-Fernandez, Federico López-Moya, Luis Vicente López-Llorca, Gang Wang, Zhenchuan Mao, Jian Ling, Youyou Yang, Xinyue Cheng, Bingyan Xie
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-20399-w

Plastid super-barcodes as a tool for species discrimination in feather grasses (Poaceae: Stipa)
Cited by: 60
Author(s): Katarzyna Krawczyk, Marcin Nobis, Kamil Myszczyński, Ewelina Klichowska, Jakub Sawicki
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-22282-0

High-Throughput Sequencing and Linkage Mapping of a Clownfish Genome Provide Insights on the Distribution of Molecular Players Involved in Sex Change
Cited by: 10
Author(s): Laura Casas, Pablo Saenz‐Agudelo, Xabier Irigoien
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-23053-7

Resolving the complete genome of Kuenenia stuttgartiensis from a membrane bioreactor enrichment using Single-Molecule Real-Time sequencing
Cited by: 37
Author(s): J. Howard Frank, Sebastian Lücker, Rolf H. A. M. Vossen, Mike S. M. Jetten, Richard J. Hall, Huub J. M. Op den Camp, Seyed Yahya Anvar
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-27134-5

Skin Microbiota in Obese Women at Risk for Surgical Site Infection After Cesarean Delivery
Cited by: 20
Author(s): Kara M. Rood, Irina A. Buhimschi, Joseph A. Jurcisek, Taryn Summerfield, Guomao Zhao, William E. Ackerman, Weiwei Wang, R. Wolfgang Rumpf, Stephen Thung, Lauren O. Bakaletz, Catalin S. Buhimschi
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-27925-w

Application of Whole Genome Resequencing in Mapping of a Tomato Yellow Leaf Curl Virus Resistance Gene
Cited by: 16
Author(s): Yinlei Wang, Jing Jiang, Liping Zhao, Rong Zhou, Wenbao Yu, Tongmin Zhao
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-29526-z

Characterization of the APETALA2/Ethylene-responsive factor (AP2/ERF) transcription factor family in sunflower
Cited by: 46
Author(s): S. Iraj Najafi, Karim Sorkheh, Fatemeh Nasernakhaei
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-32513-z

Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice
Cited by: 23
Author(s): Chao Chai, Rama Shankar, Mukesh Jain, Prasanta K. Subudhi
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-32626-5

Genome-wide identification and expression analyses of TCP transcription factor genes in Gossypium barbadense
Cited by: 33
Author(s): Kai Zheng, Zhongfu Ni, Yanying Qu, Yongsheng Cai, Zhaoen Yang, Guixin Sun, Quanjia Chen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-34448-x

Genome-wide Identification, Classification, and Expression Pattern of Homeobox Gene Family in Brassica rapa under Various Stresses
Cited by: 26
Author(s): Nadeem Khan, Chunmei Hu, Waleed Amjad Khan, Wenli Wang, Koeun Han, Hansong Dong, Zhishuo Zhang, Xilin Hou
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-34559-5

N6-Methyladenine DNA modification in Xanthomonas oryzae pv. oryzicola genome
Cited by: 7
Author(s): Chuan-Le Xiao, Shuang Xie, Qingbiao Xie, Zhaoyu Liu, Jian-Feng Xing, Kai-Kai Ji, Jun Tao, Liangying Dai, Feng Luo
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-35583-1

A high-density genetic linkage map and QTL mapping for growth and sex of yellow drum (Nibea albiflora)
Cited by: 30
Author(s): Changliang Qiu, Zhaofang Han, Wanbo Li, Kun Ye, Yangjie Xie, Zhiyong Wang
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-38450-1

Computational screening of medicinal plant phytochemicals to discover potent pan-serotype inhibitors against dengue virus
Cited by: 90
Author(s): Muhammad Tahir ul Qamar, Arooma Maryam, Iqra Muneer, Xing Feng, Usman Ali Ashfaq, Faheem Ahmed Khan, Farooq Anwar, Mohammed H. Geesi, Rana Rehan Khalid, Sadaf Abdul Rauf, Abdul Rauf Siddiqi
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-39391-z

Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans
Cited by: 12
Author(s): Elena A. Vidal, Tomás C. Moyano, Bernabé I. Bustos, Eduardo Pérez‐Palma, Carol Moraga, Eleodoro Riveras, Alejandro Montecinos, Lorena Azócar, Daniela C. Soto, Mabel Vidal, Alex Di Génova, Klaus Püschel, Peter Nürnberg, Stephan Buch, Miguel L. Allende, Verónica Cambiazo, Maurício González, Christian Hödar, Martín Montecino, Claudia Muñoz-Espinoza, Ariel Orellana, Angélica Reyes-Jara, Dante Travisany, Paula Vizoso, Mauricio Moraga, S. Eyheramendy, Alejandro Maass, Giancarlo Ferrari, Juan Francisco Miquel, Rodrigo A. Gutiérrez
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-37905-9

Revealing the Hippocampal Connectome through Super-Resolution 1150-Direction Diffusion MRI
Cited by: 70
Author(s): Jerome Joseph Maller, Thomas Welton, Matthew J. Middione, Fraser M. Callaghan, Jeffrey V. Rosenfeld, Stuart M. Grieve
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-39161-x

Prevalence of isomeric plastomes and effectiveness of plastome super-barcodes in yews (Taxus) worldwide
Cited by: 44
Author(s): Chao‐Nan Fu, Ching‐Yi Wu, Lin-Jiang Ye, Zhi-Qiong Mo, Jie Liu, Youngho Chang, Li D, Shu‐Miaw Chaw, Lian‐Ming Gao
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-41484-8

A fruit firmness QTL identified on linkage group 4 in sweet cherry (Prunus avium L.) is associated with domesticated and bred germplasm
Cited by: 24
Author(s): Lichun Cai, José Quero-García, Teresa Barreneche, Elisabeth Dirlewanger, Christopher Saski, Amy Iezzoni
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-42428-y

The development of a high-density genetic map significantly improves the quality of reference genome assemblies for rose
Cited by: 14
Author(s): Shubin Li, Guoqian Yang, Shuhua Yang, Jérémy Just, Huijun Yan, Ningning Zhou, Hongying Jian, Qigang Wang, Min Chen, Xianqin Qiu, Hao Zhang, Xue Dong, Xiaoling Jiang, Yibo Sun, Mingyu Zhong, Mohammed Bendahmane, Guogui Ning, Hong Ge, Jin‐Yong Hu, Kaixue Tang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-42572-5

Genome analysis of Paenibacillus polymyxa A18 gives insights into the features associated with its adaptation to the termite gut environment
Cited by: 16
Author(s): Nandita Pasari, Manish Gupta, Danish Eqbal, Syed Shams Yazdani
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-44856-2

QTL-seq identifies cooked grain elongation QTLs near soluble starch synthase and starch branching enzymes in rice (Oryza sativa L.)
Cited by: 39
Author(s): Siwaret Arikit, Samart Wanchana, Srisawat Khanthong, Chatree Saensuk, Tripop Thianthavon, Apichart Vanavichit, Theerayut Toojinda
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-45454-y

Genome-wide analysis of genetic variations between dominant and recessive NILs of glanded and glandless cottons
Cited by: 5
Author(s): Tianlun Zhao, Cheng Li, Cong Liu, Fan Zhang, Lei Mei, Elmon Chindudzi, Jinhong Chen, Shuijin Zhu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-45511-6

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater
Cited by: 21
Author(s): Tian Wu, Linzhou Li, Xiaoying Jiang, Yong Yang, Yanzi Song, Liang Chen, Xun Xu, Yue Shen, Ying Gu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-48239-5

Construction of a high density linkage map and genome dissection of bruchid resistance in zombi pea (Vigna vexillata (L.) A. Rich)
Cited by: 9
Author(s): Kitiya Amkul, Lixia Wang, Prakit Somta, Suhua Wang, Xuzhen Cheng
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-48492-8

Application of a high-resolution genetic map for chromosome-scale genome assembly and fine QTLs mapping of seed size and weight traits in castor bean
Cited by: 14
Author(s): Anmin Yu, Fĕi Li, Wei Xu, Zaiqing Wang, Chao Sun, Bing Han, Yue Wang, Bo Wang, Xuejiao Cheng, Aizhong Liu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-49496-0

Genome wide transcriptome analysis reveals vital role of heat responsive genes in regulatory mechanisms of lentil (Lens culinaris Medikus)
Cited by: 45
Author(s): Dharmendra Singh, Chandan Kumar Singh, Jyoti Taunk, Vasudha Jadon, Madan Pal, Kishor Gaikwad
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-52362-8

Cannabidiol Regulates Gene Expression in Encephalitogenic T cells Using Histone Methylation and noncoding RNA during Experimental Autoimmune Encephalomyelitis
Cited by: 13
Author(s): Xiaoming Yang, Marpe Bam, Prakash Nagarkatti
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-54759-x

Culture of Methanogenic Archaea from Human Colostrum and Milk
Cited by: 38
Author(s): Amadou Hamidou Togo, Ghiles Grine, Saber Khelaifia, C. Robert, Véronique Brévaut, Aurélia Caputo, Emeline Baptiste, M Bonnet, Anthony Levasseur, Michel Drancourt, Matthieu Million, Didier Raoult
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-57942-7

Analysis of Copy-Number Variations and Feline Mammary Carcinoma Survival
Cited by: 8
Author(s): José Luis Granados-Soler, Kirsten Bornemann-Kolatzki, Julia Beck, Bertram Brenig, Ekkehard Schütz, Daniela Simon Betz, Johannes Junginger, M. Hewicker‐Trautwein, Hugo Murua Escobar, Ingo Nolte
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-58271-5

Genome-wide SNP identification in Prunus rootstocks germplasm collections using Genotyping-by-Sequencing: phylogenetic analysis, distribution of SNPs and prediction of their effect on gene function
Cited by: 20
Author(s): Verónica Guajardo, Simón Solís, Rubén Almada, Christopher Saski, Ksenija Gašić, María Ángeles Moreno Sánchez
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-62836-9

Vermamoeba vermiformis CDC-19 draft genome sequence reveals considerable gene trafficking including with candidate phyla radiation and giant viruses
Cited by: 18
Author(s): Nisrine Chelkha, Issam Hasni, Amina Cherif Louazani, Anthony Levasseur, Bernard La Scola, Philippe Colson
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-63987-5

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing
Cited by: 11
Author(s): Marie‐Alice Fraiture, Bert Bogaerts, Raf Winand, Marie Deckers, Nina Papazova, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy Roosens
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-64746-2

Genome-wide Identification and Characterization of Heat Shock Protein Family Reveals Role in Development and Stress Conditions in Triticum aestivum L.
Cited by: 38
Author(s): Ashish Kumar, Saloni Sharma, Venkatesh Chunduri, Amandeep Kaur, Satinder Kaur, Nikhil Malhotra, Aman Kumar, Payal Kapoor, Anita Kumari, Jaspreet Kaur, Humira Sonah, Monika Garg
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-65001-4

Genome-wide Analysis of Four Enterobacter cloacae complex type strains: Insights into Virulence and Niche Adaptation
Cited by: 13
Author(s): Areeqa Mustafa, Muhammad Ibrahim, Muhammad Rasheed, Sumaira Kanwal, Annam Hussain, Asma Sami, Ahmed Raza, Bao‐Ku Zhu
Software Mentions: 1
Published: over 5 years ago