Ecosyste.ms: Papers

10.7150/ijbs.32860

The Grass Carp Genomic Visualization Database (GCGVD): an informational platform for genome biology of grass carp
Cited by: 10
Author(s): Min Tang, Ying Lu, Zuhong Xiong, Ming Chen, Yufang Qin
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13046-019-1519-y

lncTUG1/miR-144-3p affect the radiosensitivity of esophageal squamous cell carcinoma by competitively regulating c-MET
Cited by: 35
Author(s): Pan Wang, Zhuanbo Yang, Ting Ye, Fei Shao, Jiagen Li, Nan Sun, Jié He
Software Mentions: 1
Published: almost 5 years ago

10.3390/jof6040255

Comparative Genomic Analysis of Dactylonectria torresensis Strains from Grapevine, Soil and Weed Highlights Potential Mechanisms in Pathogenicity and Endophytic Lifestyle
Cited by: 10
Author(s): David Gramaje, Carmen Berlanas, María del Pilar Martínez-Diz, Emilia Díaz Losada, Livio Antonielli, Sabrina Beier, Markus Gorfer, Monika Schmoll, Stéphane Compant
Software Mentions: 1
Published: about 4 years ago

10.3390/jof7090717

Comparative Whole-Genome Sequence Analyses of Fusarium Wilt Pathogen (Foc R1, STR4 and TR4) Infecting Cavendish (AAA) Bananas in India, with a Special Emphasis on Pathogenicity Mechanisms
Cited by: 6
Author(s): R Thangavelu, Esack Edwin Raj, Gopi Muthukathan, M. Loganathan, Pushpakanth Periyasamy, Marimuthu Natesh, Prabaharan Manivasakan, Sharmila Kotteeswaran, Sasikala Rajendran, S. Uma
Software Mentions: 1
Published: about 3 years ago

10.1155/2018/1705478

Copy Number Variation of Immune-Related Genes and Their Association with Iodine in Adults with Autoimmune Thyroid Diseases
Cited by: 12
Author(s): Xing Jin, Yongjun Guan, Hongmei Shen, Yi Pang, Lixiang Liu, Qi Jia, Fengyan Meng, Xiaoye Zhang
Software Mentions: 1
Published: almost 7 years ago

10.1155/2014/951035

Network Analysis of Plasmidomes: The <i>Azospirillum brasilense</i> Sp245 Case
Cited by: 14
Author(s): Valerio Orlandini, Giovanni Emiliani, Marco Fondi, Isabel Maida, Elena Perrin, Renato Fani
Software Mentions: 1
Published: almost 10 years ago

10.1155/2020/2568640

Characterization and Comparative Analysis of RWP-RK Proteins from <i>Arachis duranensis</i>, <i>Arachis ipaensis</i>, and <i>Arachis hypogaea</i>
Cited by: 3
Author(s): Chenyang Liu, Dongliang Yuan, Tong Liu, Mengge Xing, Wenying Xu, Huiying Zhang, Hanqi Jin, Chunmei Cai, Shuai Li
Software Mentions: 1
Published: about 4 years ago

10.1155/2018/3505428

Genome Analysis of Rhodococcus Sp. DSSKP-R-001: A Highly Effective <i>β</i>-Estradiol-Degrading Bacterium
Cited by: 12
Author(s): Hongyan Zhao, Kejian Tian, Qing Qiu, Yu Wang, Hongyan Zhang, Shuang Ma, Shenbao Jin, Hongliang Huo
Software Mentions: 1
Published: about 6 years ago

10.1155/2015/536943

Divergence of the bZIP Gene Family in Strawberry, Peach, and Apple Suggests Multiple Modes of Gene Evolution after Duplication
Cited by: 19
Author(s): Xiaolong Wang, Yan Zhong, Zong‐Ming Cheng, Jinsong Xiong
Software Mentions: 1
Published: almost 10 years ago

10.1155/2019/4242653

Complete Genome Sequence of<i>Photobacterium damselae</i>Subsp.<i>damselae</i>Strain SSPD1601 Isolated from Deep-Sea Cage-Cultured<i>Sebastes schlegelii</i>with Septic Skin Ulcer
Cited by: 7
Author(s): Yongxiang Yu, Zheng Zhang, Yingeng Wang, Meijie Liao, Xiaojun Rong, Bin Li, Kai Wang, Jing Chen, Hao Zhang
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/2804134

Genomic Analysis of a New Estrogen-Degrading Bacterial Strain,<i>Acinetobacter</i>sp. DSSKY-A-001
Cited by: 8
Author(s): Qing Qiu, Ping Wang, Hui Kang, Yu Wang, Kejian Tian, Hongliang Huo
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph17051597

Global Mapping of Interventions to Improve Quality of Life of People with Diabetes in 1990–2018
Cited by: 11
Author(s): Bach Xuan Tran, Long Hoang Nguyen, Ngoc Minh Pham, Huyen Thi Thanh Vu, Hung Trong Nguyen, Duong Huong Phan, Giang Hai Ha, Hai Quang Pham, Thao Phuong Nguyen, Carl A. Latkin, Cyrus S.H. Ho, Roger Ho
Software Mentions: 1
Published: over 4 years ago

10.1038/oncsis.2015.34

Multiple region whole-exome sequencing reveals dramatically evolving intratumor genomic heterogeneity in esophageal squamous cell carcinoma
Cited by: 49
Author(s): Wei Cao, Wei Wu, Ming Yan, Fei Tian, Chi Ma, Q Zhang, X Li, Peng Han, Z Liu, Jianying Gu, Fred G. Biddle
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.18990

Insight into the evolution of microbial metabolism from the deep-branching bacterium, Thermovibrio ammonificans
Cited by: 39
Author(s): Donato Giovannelli, Stefan M. Sievert, Michael Hügler, Stephanie Markert, Dörte Becher, Thomas Schweder, Costantino Vetriani
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.12994

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus
Cited by: 124
Author(s): Kirsten I. Bos, Alexander Herbig, Jason W. Sahl, Nicholas Waglechner, Mathieu Fourment, Stephen Forrest, Jennifer Klunk, Verena J. Schuenemann, Debi Poinar, Melanie Kuch, G. Brian Golding, Olivier Dutour, Paul Keim, David M. Wagner, Edward C. Holmes, Johannes Krause, Hendrik N. Poinar
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.19103

A comprehensive excitatory input map of the striatum reveals novel functional organization
Cited by: 347
Author(s): Barbara J. Hunnicutt, Bart C. Jongbloets, William T. Birdsong, Katrina J Gertz, Haining Zhong, Tianyi Mao
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.54136

The landscape of coadaptation in Vibrio parahaemolyticus
Cited by: 14
Author(s): Yu‐Jun Cui, Chao Yang, Hongling Qiu, Hui Wang, Ruifu Yang, Daniel Falush
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms141224169

Genome-Wide Analysis of Respiratory Burst Oxidase Homologs in Grape (Vitis vinifera L.)
Cited by: 39
Author(s): Chenxia Cheng, Xiaozhao Xu, Min Gao, Jun Li, Chunfang Guo, Junyang Song, Xiping Wang
Software Mentions: 1
Published: almost 11 years ago

10.3390/ijms16048517

Genome-Wide Identification and Evolution of HECT Genes in Soybean
Cited by: 13
Author(s): Xianwen Meng, Chen Wang, Siddiq Ur Rahman, Yaxu Wang, Ailan Wang, Shiheng Tao
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms161023517

Systematic Analysis of the Maize PHD-Finger Gene Family Reveals a Subfamily Involved in Abiotic Stress Response
Cited by: 33
Author(s): Qianqian Wang, Jinyang Liu, Yu Wang, Yang Zhao, Haiyang Jiang, Beijiu Cheng
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms17060930

Systematic Identification, Evolution and Expression Analysis of the Zea mays PHT1 Gene Family Reveals Several New Members Involved in Root Colonization by Arbuscular Mycorrhizal Fungi
Cited by: 92
Author(s): Fang Liu, Yang Xu, Huanhuan Jiang, Chaosheng Jiang, Yibin Du, Cheng S. Gong, Wei Wang, Suwen Zhu, Guomin Han, Beijiu Cheng
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms17081211

Glutathione Transferases Superfamily: Cold-Inducible Expression of Distinct GST Genes in Brassica oleracea
Cited by: 44
Author(s): Harshavardhanan Vijayakumar, Senthil Kumar Thamilarasan, Ashokraj Shanmugam, Sathishkumar Natarajan, Hee-Jeong Jung, Jong-In Park, Hye‐Ran Kim, Mi-Young Chung, Ill–Sup Nou
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18102040

Genome-Wide Analysis of CCA1-Like Proteins in Soybean and Functional Characterization of GmMYB138a
Cited by: 16
Author(s): Shaomin Bian, Dong Jin, Ruihua Li, Xin Xie, Guangzhen Gao, Weikang Sun, Yuejia Li, Lulu Zhai, Xuyan Li
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms19030769

Evolution and Stress Responses of Gossypium hirsutum SWEET Genes
Cited by: 30
Author(s): Wei Li, Zhongying Ren, Zhenyu Wang, Kuan Sun, Xinwu Pei, Yangai Liu, Kunlun He, Fei Zhang, Chengxiang Song, Xin Zhou, Wensheng Zhang, Xiongfeng Ma, Daigang Yang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19040987

Genome-Wide Identification, Expression, and Functional Analysis of the Sugar Transporter Gene Family in Cassava (Manihot esculenta)
Cited by: 29
Author(s): Qin Liu, Dang HuiJie, Zhijian Chen, Jieying Wu, Yinhua Chen, Songbi Chen, Lijuan Luo
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19040947

Calcium-Dependent Protein Kinase Family Genes Involved in Ethylene-Induced Natural Rubber Production in Different Hevea brasiliensis Cultivars
Cited by: 11
Author(s): Liping Zhu, Xiang Jin, Quanliang Xie, Yanfei Qi, Xuchu Wang, Hongbin Li
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19051338

Genome-Wide Identification, Molecular Evolution, and Expression Profiling Analysis of Pectin Methylesterase Inhibitor Genes in Brassica campestris ssp. chinensis
Cited by: 14
Author(s): Tingting Liu, Hui Yu, Xingpeng Xiong, Xiumei Yue, Youjian Yu, Li Huang, Jiashu Cao
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19082290

Genome-Wide Identification and Analysis of Polygalacturonase Genes in Solanum lycopersicum
Cited by: 31
Author(s): Xubo Ke, Huasen Wang, Yang Li, Zhu Bao-cheng, Yunxiang Zang, Yehua He, Jiashu Cao, Zhujun Zhu, Youjian Yu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19102936

Differentially Expressed Genes Associated with the Cabbage Yellow-Green-Leaf Mutant in the ygl-1 Mapping Interval with Recombination Suppression
Cited by: 8
Author(s): Xiaoping Li, Hailong Yu, Fengqing Han, Zhiyuan Li, Zhiyuan Fang, Limei Yang, Mu Zhuang, Honghao Lv, Yumei Liu, Zhansheng Li, Xing Li, Yangyong Zhang
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms19103135

Comprehensive Analysis of Cucumber Gibberellin Oxidase Family Genes and Functional Characterization of CsGA20ox1 in Root Development in Arabidopsis
Cited by: 20
Author(s): Hong Sun, Baoya Pang, Jun Yan, Ting Wang, Lina Wang, Chunhua Chen, Qiang Li, Zhonghai Ren
Software Mentions: 1
Published: about 6 years ago

10.1007/s13205-018-1140-3

Whole-genome resequencing and transcriptomic analysis of genes regulating anthocyanin biosynthesis in black rice plants
Cited by: 15
Author(s): Jae-Hyeon Oh, Yeji Lee, Eun-Ju Byeon, Byeong-Chul Kang, Dong-Soo Kyeoung, Chang-Kug Kim
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.1961

Heat shock factors in tomatoes: genome-wide identification, phylogenetic analysis and expression profiling under development and heat stress
Cited by: 62
Author(s): Xuedong Yang, Weimin Zhu, Hui Zhang, Na Liu, Shoubo Tian
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.2388

Genome-wide identification and characterization of GRAS transcription factors in sacred lotus (<i>Nelumbo nucifera</i>)
Cited by: 30
Author(s): Yu Wang, Shenglu Shi, Ying Zhou, Yu Zhou, Jie Yang, Xiao‐Qing Tang
Software Mentions: 1
Published: about 8 years ago

10.3390/genes9040224

Genome Wide Identification, Evolutionary, and Expression Analysis of VQ Genes from Two Pyrus Species
Cited by: 15
Author(s): Yunpeng Cao, Dong Meng, Qing Jin, Yi Lin, Yongping Cai
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9070363

Genome-Wide Comparative Analysis of Aspergillus fumigatus Strains: The Reference Genome as a Matter of Concern
Cited by: 38
Author(s): Rocio Garcia-Rubio, Sara Monzón, Laura Alcázar-Fuoli, Isabel Cuesta, Emilia Mellado
Software Mentions: 1
Published: over 6 years ago

10.1186/s40169-015-0060-7

Human Chromosome Y and Haplogroups; introducing YDHS Database
Cited by: 5
Author(s): Timo Tiirikka, Jukka S. Moilanen
Software Mentions: 1
Published: over 9 years ago

10.3390/genes9080398

Genome-Wide Characterization of DNA Demethylase Genes and Their Association with Salt Response in Pyrus
Cited by: 14
Author(s): Chunxiao Liu, Hui Li, Jing Lin, Ying Wang, Xiaoyang Xu, Zong‐Ming Cheng, Yonghong Chang
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9110563

Legume Cytosolic and Plastid Acetyl-Coenzyme—A Carboxylase Genes Differ by Evolutionary Patterns and Selection Pressure Schemes Acting before and after Whole-Genome Duplications
Cited by: 7
Author(s): Anna Szczepaniak, Michał Książkiewicz, Jan Podkowiński, Katarzyna B. Czyż, Marek Figlerowicz, B. Naganowska
Software Mentions: 1
Published: about 6 years ago

10.1111/pbi.12606

A step change in the transfer of interspecific variation into wheat from <i>Amblyopyrum muticum</i>
Cited by: 95
Author(s): Julie King, Surbhi Grewal, Caiyun Yang, Stella Hubbart, Duncan Scholefield, Stephen Ashling, Stella Hubbart‐Edwards, Alexandra M. Allen, Amanda Burridge, Claire Bloor, Alessandro Davassi, Glacy Jaqueline da Silva, K. J. Chalmers, I. P. King
Software Mentions: 1
Published: about 8 years ago

10.3390/genes9120636

Genome Based Meta-QTL Analysis of Grain Weight in Tetraploid Wheat Identifies Rare Alleles of GRF4 Associated with Larger Grains
Cited by: 34
Author(s): Raz Avni, L. Oren, Gai Shabtay, Siwar Assili, Curtis Pozniak, Iago Hale, Roi Ben‐David, Zvi Peleg, Assaf Distelfeld
Software Mentions: 1
Published: almost 6 years ago

10.1111/pbi.13195

An ultra‐high‐density genetic map provides insights into genome synteny, recombination landscape and taproot skin colour in radish ( <i>Raphanus sativus</i> L.)
Cited by: 35
Author(s): Xiaobo Luo, Liang Xu, Yan Wang, Junhui Dong, Yinglong Chen, Mingjia Tang, Lu Fan, Yuelin Zhu, Liwang Liu
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.10961

Genome-wide identification of HSF family in peach and functional analysis of <i>PpHSF5</i> involvement in root and aerial organ development
Cited by: 13
Author(s): Bin Tan, Yan Liu, Huannan Li, Xiaodong Lian, Jun Cheng, Wei Wang, Xianbo Zheng, Xiaobei Wang, Jidong Li, Ye Xia, Langlang Zhang, Zhiqian Li, Jiancan Feng
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21124436

The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase
Cited by: 8
Author(s): Xianjun Li, Junhuan Wang, Jia Yang, Aikebaier Reheman, Yanchun Yan
Software Mentions: 1
Published: over 4 years ago

10.3390/genes10020156

Genome-Wide Identification and Analysis of High-Copy-Number LTR Retrotransposons in Asian Pears
Cited by: 4
Author(s): Shuang Jiang, Xiaoqing Wang, Chunhui Shi, Luo Jun
Software Mentions: 1
Published: almost 6 years ago

10.1111/pbi.12831

Construction of <i>Agropyron</i> Gaertn. genetic linkage maps using a wheat 660K <scp>SNP</scp> array reveals a homoeologous relationship with the wheat genome
Cited by: 63
Author(s): Shumin Zhou, Jinpeng Zhang, Yonghe Che, Weihua Liu, Yuqing Lu, Xinming Yang, Xiuquan Li, Jizeng Jia, Xu Liu, Lihui Li
Software Mentions: 1
Published: about 7 years ago

10.3390/genes10030239

A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns
Cited by: 44
Author(s): Xiaolong Deng, Baoguang An, Hua Zhong, Jing Yang, Weilong Kong, Yangsheng Li
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10050400

Comprehensive Genomic Survey, Characterization and Expression Analysis of the HECT Gene Family in Brassica rapa L. and Brassica oleracea L.
Cited by: 11
Author(s): Intikhab Álam, Dongli Cui, Khadija Batool, Yanqing Yang, Yong-Zai Lu
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10070500

Genome-Wide Identification, Characterization, and Expression Analysis of the NAC Transcription Factor in Chenopodium quinoa
Cited by: 13
Author(s): Liang Feng, Xuhu Guo, Jianxia Liu, Feng Zhou, Wenying Liu, Juan Wu, Hongli Zhang, Huifen Cao, Huanzhen Su, Rong Wen
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10070540

The Caribou (Rangifer tarandus) Genome
Cited by: 20
Author(s): Rebecca S. Taylor, Rebekah L. Horn, Xi Zhang, G. Brian Golding, Micheline Manseau, Paul J. Wilson
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.4796

Genome-wide characterization and expression analysis of GRAS gene family in pepper (<i>Capsicum annuum</i>L.)
Cited by: 39
Author(s): Baoling Liu, Yan Sun, Jinai Xue, Xiaoyun Jia, Runzhi Li
Software Mentions: 1
Published: over 6 years ago

10.3390/cells8050490

Integrative Analysis of the Wheat PHT1 Gene Family Reveals A Novel Member Involved in Arbuscular Mycorrhizal Phosphate Transport and Immunity
Cited by: 17
Author(s): Yi Zhang, Lizong Hu, De‐Quan Yu, Kedong Xu, Ju Zhang, Xiaoli Li, Pengfei Wang, Guo Chen, Zhihui Liu, Chunfeng Peng, Chengwei Li, Tao Guo
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21155344

Identification and Expression Analysis of Hormone Biosynthetic and Metabolism Genes in the 2OGD Family for Identifying Genes That May Be Involved in Tomato Fruit Ripening
Cited by: 6
Author(s): Qiangqiang Ding, Zhen Wang, Juan Xue, Xinxin Yang, Jun Fan, Hong Chen, Yang Li, Hongmiao Wu
Software Mentions: 1
Published: over 4 years ago

10.3390/genes10110849

Genomic Insights into the Carbon and Energy Metabolism of a Thermophilic Deep-Sea Bacterium Deferribacter autotrophicus Revealed New Metabolic Traits in the Phylum Deferribacteres
Cited by: 14
Author(s): A. I. Slobodkin, G. B. Slobodkina, Maxime Allioux, Karine Alain, Mohamed Jebbar, Valerian Shadrin, Ilya V. Kublanov, Stepan V. Toshchakov, E. A. Bonch-Osmolovskaya
Software Mentions: 1
Published: about 5 years ago

10.3390/genes10121000

Genome-Wide Distribution, Expression and Function Analysis of the U-Box Gene Family in Brassica oleracea L.
Cited by: 13
Author(s): Deng-Ke HU, Qinqin Xie, Qianying Liu, Tonghong Zuo, Hecui Zhang, Yizhong Zhang, Xiaoping Lian, Liquan Zhu
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes11020220

Development of Molecular Marker Linked with Bacterial Fruit Blotch Resistance in Melon (Cucumis melo L.)
Cited by: 12
Author(s): Rafiqul Islam, Mohammad Rashed Hossain, Denison Michael Immanuel Jesse, Hee-Jeong Jung, Hoy‐Taek Kim, Jong-In Park, Ill Sup Nou
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes11040414

CircRNA Expression Profile during Yak Adipocyte Differentiation and Screen Potential circRNAs for Adipocyte Differentiation
Cited by: 19
Author(s): Yongfeng Zhang, Xian Guo, Jie Pei, Min Chen, Xuezhi Ding, Xiaoyun Wu, Chunnina Liang, Ping Yan
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.7509

Genome-wide identification and expression analysis of the <i>VQ</i> gene family in soybean (<i>Glycine max</i>)
Cited by: 13
Author(s): Yongbin Wang, Zhenfeng Jiang, Zhenxiang Li, Youbing Zhao, Weiwei Tan, Zhaojun Liu, Shaobin Cui, Xiongbin Yu, Jun Ma, Guangjin Wang, Wenbin Li
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.27085

Deep insights into the response of human cervical carcinoma cells to a new cyano enone-bearing triterpenoid soloxolone methyl: a transcriptome analysis
Cited by: 10
Author(s): Andrey Markov, Alexander Kel, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: about 5 years ago

10.3390/genes11070744

Genomic Comparison of Insect Gut Symbionts from Divergent Burkholderia Subclades
Cited by: 13
Author(s): Kazutaka Takeshita, Yoshitomo Kikuchi
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11070771

Network Analysis Identifies Gene Regulatory Network Indicating the Role of RUNX1 in Human Intervertebral Disc Degeneration
Cited by: 8
Author(s): Nazir M. Khan, Martha Elena Díaz-Hernández, Steven M. Presciutti, Hicham Drissi
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11080928

Karyotypic Evolution of Sauropsid Vertebrates Illuminated by Optical and Physical Mapping of the Painted Turtle and Slider Turtle Genomes
Cited by: 3
Author(s): Ling Sze Lee, Beatriz Navarro-Domínguez, Zhiqiang Wu, Eugenia E. Montiel, Daleen Badenhorst, Basanta Bista, Thea B. Gessler, Nicole Valenzuela
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21175947

Genome-Wide Systematic Characterization of the NPF Family Genes and Their Transcriptional Responses to Multiple Nutrient Stresses in Allotetraploid Rapeseed
Cited by: 22
Author(s): Hao Zhang, Shuang Li, M. Shi, Sheliang Wang, Lei Shi, Fangsen Xu, Guangda Ding
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21186729

Whole-Genome Sequencing Analysis of Quorum Quenching Bacterial Strain Acinetobacter lactucae QL-1 Identifies the FadY Enzyme for Degradation of the Diffusible Signal Factor
Cited by: 13
Author(s): Yao Tian, Tianxing Zhou, Xudan Xu, Wenping Zhang, Xinghui Fan, Sandhya Mishra, Lian-Hui Zhang, Xin Zhou, Shaohua Chen
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11101135

Genome-Wide Identification and Characterization of Fusarium graminearum-Responsive lncRNAs in Triticum aestivum
Cited by: 3
Author(s): Xiao-Xin Duan, Xiu-Shi Song, Jianxin Wang, Mingguo Zhou
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11101154

F-Box Genes in the Wheat Genome and Expression Profiling in Wheat at Different Developmental Stages
Cited by: 23
Author(s): Min Jeong Hong, Jin Baek Kim, Yong Weon Seo, Dae Yeon Kim
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11111256

Involvement of Essential Signaling Cascades and Analysis of Gene Networks in Diabesity
Cited by: 27
Author(s): Udhaya Kumar S, Bithia Rajan, Thirumal Kumar D, A.R. Preethi, Taghreed Abunada, Salma Younes, Sarah Okashah, Selvarajan Ethiraj, George Priya Doss C, Hatem Zayed
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11111269

Heavy Metal Transporters-Associated Proteins in Solanum tuberosum: Genome-Wide Identification, Comprehensive Gene Feature, Evolution and Expression Analysis
Cited by: 28
Author(s): Guandi He, Lijun Qin, Weijun Tian, Lulu Meng, Tengbing He, Degang Zhao
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11121412

Evolutionary Understanding of Metacaspase Genes in Cultivated and Wild Oryza Species and Its Role in Disease Resistance Mechanism in Rice
Cited by: 4
Author(s): Ruchi Bansal, Nitika Rana, Akshay Singh, Pallavi Dhiman, Rushil Mandlik, Humira Sonah, Rupesh Deshmukh, Tilak Raj Sharma
Software Mentions: 1
Published: almost 4 years ago

10.3390/cells8060520

In Silico Genome-Wide Analysis of Respiratory Burst Oxidase Homolog (RBOH) Family Genes in Five Fruit-Producing Trees, and Potential Functional Analysis on Lignification of Stone Cells in Chinese White Pear
Cited by: 29
Author(s): Xi Cheng, Guohui Li, Muhammad Aamir Manzoor, Han Wang, Muhammad Abdullah, Xueqiang Su, Jingyun Zhang, Tao‐Shan Jiang, Qing Jin, Yongping Cai, Yi Lin
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12010049

A Comprehensive Integrated Genetic Map of the Complete Karyotype of Solea senegalensis (Kaup 1858)
Cited by: 5
Author(s): Manuel Alejandro Merlo, Silvia Portela-Bens, María Esther Rodríguez, Aglaya García-Angulo, Ismael Cross, Alberto Arias‐Pérez, Emilio García García, Laureana Rebordinos
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes12020302

Comprehensive Genome-Wide Exploration of C2H2 Zinc Finger Family in Grapevine (Vitis vinifera L.): Insights into the Roles in the Pollen Development Regulation
Cited by: 13
Author(s): Oscar Arrey-Salas, José Carlos Caris-Maldonado, Bairon Hernández-Rojas, Enrique González
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes12030326

Comparative Analysis, Characterization and Evolutionary Study of Dirigent Gene Family in Cucurbitaceae and Expression of Novel Dirigent Peptide against Powdery Mildew Stress
Cited by: 15
Author(s): Vivek Yadav, Zhongyuan Wang, Xiaozhen Yang, Cheng Wei, Changqing Xuan, Xian Zhang
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21186709

Identification, Characterization, and Genomic Analysis of Novel Serratia Temperate Phages from a Gold Mine
Cited by: 11
Author(s): Katarzyna Bujak, Przemysław Decewicz, Jacek Kamiński, Monika Radlińska
Software Mentions: 1
Published: about 4 years ago

10.3390/cells7070077

Comparative and Expression Analysis of Ubiquitin Conjugating Domain-Containing Genes in Two Pyrus Species
Cited by: 13
Author(s): Yunpeng Cao, Dong Meng, Yu Chen, Muhammad Abdullah, Qing Jin, Yi Lin, Yongping Cai
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21217876

Dual Effect of Soloxolone Methyl on LPS-Induced Inflammation In Vitro and In Vivo
Cited by: 9
Author(s): Andrey Markov, Aleksandra V. Sen’kova, Valeriya O. Babich, Kirill V. Odarenko, Vadim A Talyshev, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21218064

An Earliest Endosymbiont, Wolbachia massiliensis sp. nov., Strain PL13 from the Bed Bug (Cimex hemipterus), Type Strain of a New Supergroup T
Cited by: 20
Author(s): Younes Laidoudi, Anthony Levasseur, Hacène Medkour, Mossaab Maaloum, Mariem Ben Khedher, Masse Sambou, Hubert Bassène, Bernard Davoust, Florence Fénollar, Didier Raoult, Oleg Mediannikov
Software Mentions: 1
Published: about 4 years ago

10.3390/cells7090120

Identification and Characterization of LRR-RLK Family Genes in Potato Reveal Their Involvement in Peptide Signaling of Cell Fate Decisions and Biotic/Abiotic Stress Responses
Cited by: 28
Author(s): Xiaoxu Li, Saboor Ahmad, Chunfang Guo, Jing Yu, Songxiao Cao, Xiao‐Ming Gao, Wei Li, Hong Li, Yongfeng Guo
Software Mentions: 1
Published: about 6 years ago

10.3390/genes12071045

Evolution and Characterization of Acetyl Coenzyme A: Diacylglycerol Acyltransferase Genes in Cotton Identify the Roles of GhDGAT3D in Oil Biosynthesis and Fatty Acid Composition
Cited by: 10
Author(s): Yanpeng Zhao, Na Wu, Wenjie Li, Jian-Ling Shen, Chen Chen, Fuguang Li, Yuxia Hou
Software Mentions: 1
Published: over 3 years ago

10.3390/genes12070981

Genome-Wide Analysis of the YABBY Transcription Factor Family in Rapeseed (Brassica napus L.)
Cited by: 9
Author(s): Jichun Xia, Dong Wang, Yuzhou Peng, Wenning Wang, Qianqian Wang, Yongsheng Xu, Tongzhou Li, Kai Zhang, Jiana Li, Xinhua Xu
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21218262

Genome-Wide Identification and Functional Characterization of the Cation Proton Antiporter (CPA) Family Related to Salt Stress Response in Radish (Raphanus sativus L.)
Cited by: 18
Author(s): Yan Wang, Jiali Ying, Zhangping Yang, Liang Xu, Wanting Zhang, Meng Ni, Yuelin Zhu, Liwang Liu
Software Mentions: 1
Published: about 4 years ago

10.1186/s41021-021-00174-6

Panel of significant risk factors predicts early stage gastric cancer and indication of poor prognostic association with pathogens and microsatellite stability
Cited by: 4
Author(s): Payel Chakraborty, Souvik Ghatak, Saia Chenkual, Lalawmpuii Pachuau, John Zohmingthanga, Zothankima Bawihtlung, Lalfakzuala Khenglawt, Jeremy L. Pautu, Arindam Maitra, Lalchhandama Chhakchhuak, Nachimuthu Senthil Kumar
Software Mentions: 1
Published: almost 4 years ago

10.1007/s13258-018-0751-8

Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding
Cited by: 30
Author(s): Hyunju Choi
Software Mentions: 1
Published: about 6 years ago

10.1590/1678-4685-GMB-2017-0109

Characterization and expression of the ABC family (G group) in ‘Dangshansuli’ pear (Pyrus bretschneideri Rehd.) and its russet mutant
Cited by: 8
Author(s): Zhaoqi Hou, Bing Jia, Fĕi Li, Pu Liu, Zhenfeng Ye, Li Zhu, Qi Wang, Wei Heng
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.1950

Genome sequencing and analysis of the first complete genome of<i>Lactobacillus kunkeei</i>strain MP2, an<i>Apis mellifera</i>gut isolate
Cited by: 19
Author(s): Freddy Asenjo, Alejandro Olmos, Patricia Henríquez‐Piskulich, Víctor Polanco, Patricia Aldea, Juan A. Ugalde, Annette N. Trombert
Software Mentions: 1
Published: over 8 years ago

10.3390/nu13072326

Systematic Bioinformatic Analyses of Nutrigenomic Modifications by Polyphenols Associated with Cardiometabolic Health in Humans—Evidence from Targeted Nutrigenomic Studies
Cited by: 14
Author(s): Tatjana Ruskovska, Irena Budić-Leto, Karla Fabiola Corral-Jara, Vladimir Ajdžanović, Anna Arola‐Arnal, Francisca Isabel Bravo, Georgia-Eirini Deligiannidou, Jaroslav Havlík, Milkica Janeva, Elena Kistanova, Christos Kontogiorgis, Irèna Krga, Marika Massaro, Marko Miler, Verica Milošević, Christine Morand, Egeria Scoditti, Manuel Suárez, David Vauzour, Dragan Milenković
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21228639

Whole Genome Sequencing and Tn5-Insertion Mutagenesis of Pseudomonas taiwanensis CMS to Probe Its Antagonistic Activity Against Rice Bacterial Blight Disease
Cited by: 1
Author(s): Wen-Jen Chen, Tzu-Yen Kuo, Chun-Yi Chen, Feng-Chia Hsieh, Yu Liang Yang, Je-Ruei Liu, Ming-Che Shih
Software Mentions: 1
Published: about 4 years ago

10.1111/pbi.13456

Long‐read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plant
Cited by: 38
Author(s): Harmeet Singh Chawla, HueyTyng Lee, Iulian Gabur, Paul Vollrath, Suriya Tamilselvan‐Nattar‐Amutha, Christian Obermeier, Sarah Schiessl, Jia‐Ming Song, Kede Liu, Liang Guo, Isobel A. P. Parkin, Rod J. Snowdon
Software Mentions: 1
Published: about 4 years ago

10.1128/genomeA.00524-14

Complete Genome Sequences of Pseudomonas monteilii SB3078 and SB3101, Two Benzene-, Toluene-, and Ethylbenzene-Degrading Bacteria Used for Bioaugmentation
Cited by: 12
Author(s): Morten Simonsen Dueholm, Mads Albertsen, Seth D’Imperio, Vaibhav P. Tale, Derrick L. Lewis, Per Halkjær Nielsen, Jeppe Lund Nielsen
Software Mentions: 1
Published: over 10 years ago

10.1128/genomeA.00525-14

Complete Genome of Rhodococcus pyridinivorans SB3094, a Methyl-Ethyl-Ketone-Degrading Bacterium Used for Bioaugmentation
Cited by: 11
Author(s): Morten Simonsen Dueholm, Mads Albertsen, Seth D’Imperio, Vaibhav P. Tale, Derrick L. Lewis, Per Halkjær Nielsen, Jeppe Lund Nielsen
Software Mentions: 1
Published: over 10 years ago

10.1111/pbi.12989

Genome sequence and genetic transformation of a widely distributed and cultivated poplar
Cited by: 55
Author(s): Jianchao Ma, Dongshi Wan, Bingbing Duan, Xiaotao Bai, Qiuxian Bai, Ningning Chen, Tao Ma
Software Mentions: 1
Published: about 6 years ago

10.1128/genomeA.00466-15

Draft Genome Sequences of Two Clinical Isolates of Mycobacterium tuberculosis from Sputum of Kazakh Patients
Cited by: 4
Author(s): Ulykbek Kairov, Ulan Kozhamkulov, Askhat Molkenov, Saule Rakhimova, Ayken Askapuli, Maxat Zhabagin, Ainur Akhmetova, Dauren Yerezhepov, Zhannur Abilova, Aliya Abilmazhinova, Venera Bismilda, Л. Т. Чингисова, Zhaxybay Zhumadilov, Ainur Akilzhanova
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.00063-17

Draft Genome Sequences of Two Clinical Isolates of Burkholderia mallei Obtained from Nasal Swabs of Glanderous Equines in India
Cited by: 3
Author(s): Harisankar Singha, Praveen Malik, Sheetal Saini, Sandip Kumar Khurana, Mandy C. Elschner, Katja Mertens, Stefanie A. Barth, Bhupendra Nath Tripathi, Raj Kumar Singh
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.00150-18

Draft Genome Sequence of a Dictyoglomus sp. from an Enrichment Culture of a New Zealand Geothermal Spring
Cited by: 0
Author(s): Anna‐Louise Reysenbach, John A. Donaho, John F. Kelley, Emily St. John, Christina Turner, Mircea Podar, Matthew B. Stott
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00197-18

Complete Genome Sequence of the Poly-γ-Glutamate-Synthesizing Bacterium Bacillus subtilis Bs-115
Cited by: 0
Author(s): Fengqing Wang, Lijuan Gong, Lihong Zhou, Jinzhong Liu
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.10934

Genome-wide identification and characterization of the <i>OFP</i> gene family in Chinese cabbage (<i>Brassica rapa</i> L. ssp. <i>pekinensis</i>)
Cited by: 1
Author(s): Ruihua Wang, Han TaiLi, Jifeng Sun, Liang Xu, Jingjing Fan, Hui Cao, Chunxiang Liu
Software Mentions: 1
Published: over 3 years ago

10.1186/gb-2010-11-8-r89

Genomic acquisition of a capsular polysaccharide virulence cluster by non-pathogenic Burkholderia isolates
Cited by: 66
Author(s): Bernice Sim, Narisara Chantratita, Wen Fong Ooi, Tannistha Nandi, Ryan Tewhey, Vanaporn Wuthiekanun, Janjira Thaipadungpanit, Sarinna Tumapa, Pramila Ariyaratne, Wing-Kin Sung, Xiao Hui Sem, Hui Hoon Chua, R. Kalpana, Chi Ho Lin, Yichun Liu, Edward J. Feil, Mindy B. Glass, Gladys Tan, Sharon J. Peacock, Patrick Tan
Software Mentions: 1
Published: almost 15 years ago

10.1186/gb-2011-12-1-r6

Identification of fusion genes in breast cancer by paired-end RNA-sequencing
Cited by: 281
Author(s): Henrik Edgren, Astrid Murumägi, Sara Kangaspeska, Daniel Nicorici, Vesa Hongisto, Kristine Kleivi, Inga Hansine Rye, Sandra Nyberg, Maija Wolf, Anne Lise Børresen-Dale, Olli Kallioniemi
Software Mentions: 1
Published: almost 14 years ago

10.3390/jcm10020312

Attenuated Resting-State Functional Anticorrelation between Attention and Executive Control Networks in Schizotypal Personality Disorder
Cited by: 3
Author(s): Ji-Won Hur, Taekwan Kim, Kang Ik K. Cho, Jun Soo Kwon
Software Mentions: 1
Published: almost 4 years ago

10.1155/2019/2893041

Metagenomics and Faecal Metabolomics Integrative Analysis towards the Impaired Glucose Regulation and Type 2 Diabetes in Uyghur-Related Omics
Cited by: 20
Author(s): Rebiya Nuli, Jureti Azhati, Junxiu Cai, Aizhatiguli Kadeer, Bing Zhang, Patamu Mohemaiti
Software Mentions: 1
Published: about 5 years ago

10.1093/jxb/eru007

Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family
Cited by: 209
Author(s): Chunfang Guo, Rongrong Guo, Xiaozhao Xu, Min Gao, Xiaoqin Li, Junyang Song, Yi Zheng, Xiping Wang
Software Mentions: 1
Published: almost 11 years ago