10.1371/journal.pone.0117771

Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan
Cited by: 56
Author(s): Asho Ali, Zahra Hasan, Ruth McNerney, Kim Mallard, Grant A. Hill-Cawthorne, Francesc Español i Coll, Mridul Nair, Arnab Pain, Taane G. Clark, Rumina Hasan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0101108

Australian Sphingidae – DNA Barcodes Challenge Current Species Boundaries and Distributions
Cited by: 36
Author(s): Rodolphe Rougerie, Ian J. Kitching, J. Haxaire, Scott E. Miller, Axel Hausmann, Paul D. N. Hebert
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0099213

A Survey of Innovation through Duplication in the Reduced Genomes of Twelve Parasites
Cited by: 8
Author(s): Jeremy D. DeBarry, Jessica C. Kissinger
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0205519

Location-dependent effects of trauma on oxidative stress in humans
Cited by: 4
Author(s): Luis Serviá, José C. E. Serrano, Reinald Pamplona, Mariona Badía, Neus Montserrat, Manuel Portero‐Otín, Javier Ortiz-Echagüe Trujillano
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0187341

BioVis Explorer: A visual guide for biological data visualization techniques
Cited by: 25
Author(s): Andreas Kerren, Kostiantyn Kucher, Yuan Fang Li, Falk Schreiber
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0199323

In silico and ex vivo approaches indicate immune pressure on capsid and non-capsid regions of coxsackie B viruses in the human system
Cited by: 5
Author(s): Ritu Kundu, Robin R. Knight, Meenakshi Dunga, Mark Peakman
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0229624

Hexaploid sweetpotato (Ipomoea batatas (L.) Lam.) may not be a true type to either auto- or allopolyploid
Cited by: 13
Author(s): Ming Gao, Sara Fuentes Soriano, Qinghe Cao, Xinsun Yang, Guquan Lu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0068824

Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes
Cited by: 61
Author(s): Seung Chul Shin, Do Hwan Ahn, Su Jin Kim, Hyoungseok Lee, Tae‐Jin Oh, Jong Eun Lee, Hyun Park
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0214519

Assessing the genetic diversity and characterizing genomic regions conferring Tan Spot resistance in cultivated rye
Cited by: 14
Author(s): Jagdeep Singh Sidhu, Sai Mukund Ramakrishnan, Shaukat Ali, Amy Bernardo, Guihua Bai, Sidrat Abdullah, Girma Ayana, Sunish K. Sehgal
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0108479

Genome Re-Sequencing of Semi-Wild Soybean Reveals a Complex Soja Population Structure and Deep Introgression
Cited by: 24
Author(s): Jie Qiu, Yu Wang, Sanling Wu, Yingying Wang, Chu-Yu Ye, Xin Bai, Zefeng Li, Chenghai Yan, Weidi Wang, Ziqiang Wang, Qingyao Shu, Jiahua Xie, Suk-Ha Lee, Longjiang Fan
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0168994

Whole Genome Sequence and Comparative Genomics of the Novel Lyme Borreliosis Causing Pathogen, Borrelia mayonii
Cited by: 39
Author(s): Luke C. Kingry, Dhwani Batra, Adam J. Replogle, Lori A. Rowe, Bobbi S. Pritt, Jeannine M. Petersen
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0102600

Improving the Safety of Staphylococcus aureus Polyvalent Phages by Their Production on a Staphylococcus xylosus Strain
Cited by: 43
Author(s): Lynn El Haddad, Nour Ben Abdallah, Pier Luc Plante, Jeannot Dumaresq, Ramaz Katsarava, Steve Labrie, Jacques Corbeil, Daniel St‐Gelais, Sylvain Moineau
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0161348

Positive Selection Pressure Drives Variation on the Surface-Exposed Variable Proteins of the Pathogenic Neisseria
Cited by: 18
Author(s): Jenny Wachter, Stuart A. Hill
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0167600

A Comparison and Integration of MiSeq and MinION Platforms for Sequencing Single Source and Mixed Mitochondrial Genomes
Cited by: 33
Author(s): Michael Lindberg, Sarah E. Schmedes, F. Curtis Hewitt, Jamie Haas, Krista Ternus, Dana R Kadavy, Bruce Budowle
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0124669

Aldehyde Dehydrogenase Gene Superfamily in Populus: Organization and Expression Divergence between Paralogous Gene Pairs
Cited by: 20
Author(s): Fei Tian, Zang Jian-Lei, Tan Wang, Yuning Xie, Jin Zhang, Jianjun Hu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0221460

Identification of miRNAs involved in fruit ripening by deep sequencing of Olea europaea L. transcriptome
Cited by: 11
Author(s): Fabrizio Carbone, Leonardo Bruno, Gaetano Perrotta, Maria Beatrice Bitonti, Innocenzo Muzzalupo, Adriana Chiappetta
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0202993

ABC transportome inventory of human pathogenic yeast Candida glabrata: Phylogenetic and expression analysis
Cited by: 23
Author(s): Sonam Kumari, Mohit Kumar, Nitesh Khandelwal, Priya Kumari, Mahendra Varma, Poonam Vishwakarma, Garima Shahi, S. M. Sharma, Andrew M. Lynn, Rajendra Prasad, Naseem A. Gaur
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0149515

Molecular Characterization of Transgenic Events Using Next Generation Sequencing Approach
Cited by: 52
Author(s): Satish K. Guttikonda, Pradeep Reddy Marri, Jafar Mammadov, Y. T. Liang, Khaing Soe, Kimberly Richey, James Cruse, Meibao Zhuang, Zili Gao, Clive Evans, Steve Rounsley, Siva P. Kumpatla
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0161763

Molecular Evolution and Genetic Variation of G2-Like Transcription Factor Genes in Maize
Cited by: 28
Author(s): Fang Liu, Yang Xu, Guomin Han, Lingyan Zhou, Asif Ali, Suwen Zhu, Xiaoyü Li
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0165101

Computational Analysis of G-Quadruplex Forming Sequences across Chromosomes Reveals High Density Patterns Near the Terminal Ends
Cited by: 16
Author(s): Julia H. Chariker, Donald M. Miller, Eric C. Rouchka
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0215696

The chromatin structuring protein HMGA2 influences human subtelomere stability and cancer chemosensitivity
Cited by: 14
Author(s): Syed Moiz Ahmed, Priya Dharshana Ramani, Stephen Qi Rong Wong, Xiaodan Zhao, Roland Iványi-Nagy, Tang Choong Leong, Clarinda Chua, Zhizhong Li, Hannes Hentze, Iain Beehuat Tan, Jie Yan, Ramanuj DasGupta, Peter Dröge
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0171181

Comparative analysis of NBS-LRR genes and their response to Aspergillus flavus in Arachis
Cited by: 35
Author(s): Hui Song, Pengfei Wang, Changsheng Li, Soohee Han, Chuanzhi Zhao, Han Xia, Yuping Bi, Bao‐Zhu Guo, Xinyou Zhang, Xingjun Wang
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0042041

The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
Cited by: 19
Author(s): Zhang Tongwu, Songnian Hu, Guangyu Zhang, Li-Long Pan, Xiaowei Zhang, Ibrahim S. Al-Mssallem, Jun Yu
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0064929

A Computational Systems Biology Study for Understanding Salt Tolerance Mechanism in Rice
Cited by: 26
Author(s): Juexin Wang, Liang Chen, Yan Wang, Jingfen Zhang, Yanchun Liang, Dong Xu
Software Mentions: 1
Published: over 13 years ago

10.3390/cancers12040843

Plasma and Tissue Specific miRNA Expression Pattern and Functional Analysis Associated to Colorectal Cancer Patients
Cited by: 37
Author(s): Roxana Cojocneanu, Cornelia Braicu, Lajos Ráduly, Ancuța Jurj, Oana Zănoagă, Lorand Magdo, Alexandru Irimie, Mihai-Stefan Muresan, Călin Ionescu, Mircea Grigorescu, Ioana Berindan‐Neagoe
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers12092489

lncRNAs–mRNAs Co–Expression Network Underlying Childhood B–Cell Acute Lymphoblastic Leukaemia: A Pilot Study
Cited by: 9
Author(s): Ornella Affinito, Katia Pane, Giovanni Smaldone, Francesca Maria Orlandella, Peppino Mirabelli, Giuliana Beneduce, Rosanna Parasole, Mimmo Ripaldi, Marco Salvatore, Monica Franzese
Software Mentions: 1
Published: about 6 years ago

10.3390/cancers11040522

Germline Missense Variants in BRCA1: New Trends and Challenges for Clinical Annotation
Cited by: 16
Author(s): Volha A. Golubeva, Thales C. Nepomuceno, Alvaro N.A. Monteiro
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers10070231

Vaccinia Virus Shuffling: deVV5, a Novel Chimeric Poxvirus with Improved Oncolytic Potency
Cited by: 14
Author(s): Marine Ricordel, Johann Foloppe, D Antoine, Annie Findeli, Juliette Kempf, Pascale Cordier, Aude Gerbaud, Benoît Grellier, Monika Lusky, Éric Quémeneur, Philippe Erbs
Software Mentions: 1
Published: over 8 years ago

10.1016/j.cell.2010.11.055

Massive Genomic Rearrangement Acquired in a Single Catastrophic Event during Cancer Development
Cited by: 1,964
Author(s): Philip J. Stephens, Chris Greenman, Beiyuan Fu, Fengtang Yang, Graham R. Bignell, Laura Mudie, Erin Pleasance, King Wai Lau, David Beare, Lucy Stebbings, Stuart McLaren, Meng-Lay Lin, David J. McBride, Ignacio Varela, Serena Nik-Zainal, Catherine Leroy, Mingming Jia, Andrew Menzies, Adam Butler, Jon W. Teague, Michael A. Quail, John H. Burton, Harold Swerdlow, Nigel P. Carter, Laura Morsberger, Christine A. Iacobuzio‐Donahue, George Follows, Andrew Green, Adrienne M. Flanagan, Michael R. Stratton, P. Andrew Futreal, Peter J. Campbell
Software Mentions: 1
Published: almost 16 years ago

10.1016/j.cell.2015.10.009

Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago
Cited by: 390
Author(s): Simon Rasmussen, Morten E. Allentoft, Kasper Nielsen, Ludovic Orlando, Martin Sikora, Karl-Göran Sjögren, Anders Gorm Pedersen, Mikkel Schubert, Alex Van Dam, Christian M. O. Kapel, Henrik Bjørn Nielsen, Søren Brunak, Պավել Ավետիսյան, Andrey Epimakhov, Mikhail Viktorovich Khalyapin, Artak Gnuni, Айвар Крийска, Irena Lasak, Mait Metspalu, Vyacheslav Moiseyev, А. В. Громов, Dalia Pokutta, Lehti Saag, Liivi Varul, Levon Yepiskoposyan, Thomas Sicheritz-Pontén, Robert Foley, Marta Mirazón Lahr, Rasmus Nielsen, Kristian Kristiansen, Eske Willerslev
Software Mentions: 1
Published: about 11 years ago

10.1038/s41418-020-0543-y

Inhibition of the autophagic protein ULK1 attenuates axonal degeneration in vitro and in vivo, enhances translation, and modulates splicing
Cited by: 23
Author(s): Björn Friedhelm Vahsen, Vinícius Toledo Ribas, Jonas Sundermeyer, Alexander Boecker, Vivian Dambeck, Christof Lenz, Orr Shomroni, Lucas Caldi Gomes, Lars Tatenhorst, Elisabeth Barski, Anna-Elisa Roser, Uwe Michel, Henning Urlaub, Gabriela Salinas, Mathias Bähr, Jan Christoph Koch, Paul Lingor
Software Mentions: 1
Published: over 6 years ago

10.1038/s41418-020-0521-4

53BP1 loss rescues embryonic lethality but not genomic instability of BRCA1 total knockout mice
Cited by: 19
Author(s): Jiyuan Chen, Peng Li, Licun Song, Long Bai, Michael S. Y. Huen, Yidan Liu, Lin-Yu Lu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41418-021-00778-z

USP24 promotes drug resistance during cancer therapy
Cited by: 9
Author(s): Shao-An Wang, Ming Jer Young, Yi Chang Wang, Shu Hui Chen, Chia-Yu Liu, Yao An Lo, Hung Hsiang Jen, Kai Cheng Hsu, Jan Jong Hung
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-019-1907-4

Chromosomal instability of circulating tumor DNA reflect therapeutic responses in advanced gastric cancer
Cited by: 17
Author(s): Zuhua Chen, Cheng Zhang, Zhang Mengqi, Beifang Li, Yue Niu, Limeng Chen, Jing Yang, Sijia Lü, Jing Gao, Lin Shen
Software Mentions: 1
Published: about 7 years ago

10.1111/cpr.12862

High‐efficient generation of VCAM‐1⁺ mesenchymal stem cells with multidimensional superiorities in signatures and efficacy on aplastic anaemia mice
Cited by: 35
Author(s): Yimeng Wei, Leisheng Zhang, Ying Cheng, Xiang Ren, Yuchen Gao, Baoquan Song, Chengwen Li, Zhibo Han, Zhongchao Han
Software Mentions: 1
Published: over 6 years ago

10.1038/s41422-018-0008-8

KRAB-type zinc-finger proteins PITA and PISA specifically regulate p53-dependent glycolysis and mitochondrial respiration
Cited by: 27
Author(s): Shan Wang, Zhiqiang Peng, Siying Wang, Lihua Yang, Yuhan Chen, Xue Kong, Shanshan Song, Pei Pei, Chunyan Tian, Hui Yan, Peipei Ding, Weiguo Hu, Cui Hua Liu, Xin Zhang, Fuchu He, Lingqiang Zhang
Software Mentions: 1
Published: over 8 years ago

10.3390/cells7090120

Identification and Characterization of LRR-RLK Family Genes in Potato Reveal Their Involvement in Peptide Signaling of Cell Fate Decisions and Biotic/Abiotic Stress Responses
Cited by: 28
Author(s): Xiaoxu Li, Saboor Ahmad, Chunfang Guo, Jing Yu, Songxiao Cao, Xiao‐Ming Gao, Wei Li, Hong Li, Yongfeng Guo
Software Mentions: 1
Published: about 8 years ago

10.3390/cells7070077

Comparative and Expression Analysis of Ubiquitin Conjugating Domain-Containing Genes in Two Pyrus Species
Cited by: 13
Author(s): Yunpeng Cao, Dong Meng, Yu Chen, Muhammad Abdullah, Qing Jin, Yi Lin, Yongping Cai
Software Mentions: 1
Published: about 8 years ago

10.3390/cells8060520

In Silico Genome-Wide Analysis of Respiratory Burst Oxidase Homolog (RBOH) Family Genes in Five Fruit-Producing Trees, and Potential Functional Analysis on Lignification of Stone Cells in Chinese White Pear
Cited by: 29
Author(s): Xi Cheng, Guohui Li, Muhammad Aamir Manzoor, Han Wang, Muhammad Abdullah, Xueqiang Su, Jingyun Zhang, Tao‐Shan Jiang, Qing Jin, Yongping Cai, Yi Lin
Software Mentions: 1
Published: over 7 years ago

10.3390/cells8050490

Integrative Analysis of the Wheat PHT1 Gene Family Reveals A Novel Member Involved in Arbuscular Mycorrhizal Phosphate Transport and Immunity
Cited by: 17
Author(s): Yi Zhang, Lizong Hu, De‐Quan Yu, Kedong Xu, Ju Zhang, Xiaoli Li, Pengfei Wang, Guo Chen, Zhihui Liu, Chunfeng Peng, Chengwei Li, Tao Guo
Software Mentions: 1
Published: over 7 years ago

10.1186/s40169-015-0060-7

Human Chromosome Y and Haplogroups; introducing YDHS Database
Cited by: 5
Author(s): Timo Tiirikka, Jukka S. Moilanen
Software Mentions: 1
Published: over 11 years ago

10.1101/mcs.a001032

Homozygous inactivation of <i>CHEK2</i> is linked to a familial case of multiple primary lung cancer with accompanying cancers in other organs
Cited by: 15
Author(s): Yoji Kukita, Jiro Okami, Noriko Yoneda-Kato, Ikuko Nakamae, Takeshi Kawabata, Masahiko Higashiyama, Jun‐ya Kato, Ken Kodama, Kikuya Kato
Software Mentions: 1
Published: about 10 years ago

10.1038/s42003-019-0553-9

Compression-induced expression of glycolysis genes in CAFs correlates with EMT and angiogenesis gene expression in breast cancer
Cited by: 35
Author(s): Baek Gil Kim, Jin Sol Sung, Yeonsue Jang, Yoon Jin, Suki Kang, Hyunho Han, Juhyun Lee, Nam Hoon Cho
Software Mentions: 1
Published: about 7 years ago

10.1038/s42003-021-01689-y

Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt
Cited by: 22
Author(s): Simone Rampelli, Silvia Turroni, Carolina Mallol, Constantino Criado Hernández, Bertila Galván, Ainara Sistiaga, Elena Biagi, Annalisa Astolfi, Patrizia Brigidi, Stefano Benazzi, Cecil M. Lewis, Christina Warinner, Courtney A. Hofman, Stephanie L. Schnorr, Marco Candela
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-01747-5

RSPO4-CRISPR alleviates liver injury and restores gut microbiota in a rat model of liver fibrosis
Cited by: 13
Author(s): Linghua Yu, Linlin Wang, Xiaojun Wu, Huixing Yi
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-020-1105-z

Transcriptome-wide association study for restless legs syndrome identifies new susceptibility genes
Cited by: 9
Author(s): Fulya Akçimen, Faezeh Sarayloo, Calwing Liao, Jay P. Ross, Rachel De Barros Oliveira, Patrick A. Dion, Guy A. Rouleau
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-020-01643-4

Genome-wide analysis of DNA G-quadruplex motifs across 37 species provides insights into G4 evolution
Cited by: 36
Author(s): Feng Wu, Kangkang Niu, Yong Cui, Cencen Li, Mo Lyu, Yandong Ren, Yanfei Chen, Huimin Deng, Lihua Huang, Sichun Zheng, Lin Liu, Jian Wang, Qisheng Song, Hui Xiang, Qili Feng
Software Mentions: 1
Published: over 5 years ago

10.1016/j.cub.2016.10.061

17th Century Variola Virus Reveals the Recent History of Smallpox
Cited by: 184
Author(s): Ana T. Duggan, Maria F. Perdomo, Dario Piombino–Mascali, Stephanie Marciniak, Debi Poinar, Matthew V. Emery, Jan P. Buchmann, Sebastián Duchêne, Rimantas Jankauskas, Margaret Humphreys, G. Brian Golding, John Southon, Alison Devault, Jean Marie Rouillard, Jason W. Sahl, Olivier Dutour, Klaus Hedman, Antti Sajantila, Geoffrey L. Smith, Edward C. Holmes, Hendrik N. Poinar
Software Mentions: 1
Published: almost 10 years ago

10.1007/s40471-017-0100-5

Analytic Complexity and Challenges in Identifying Mixtures of Exposures Associated with Phenotypes in the Exposome Era
Cited by: 44
Author(s): Chirag Patel
Software Mentions: 1
Published: over 9 years ago

10.1007/s00294-018-0815-y

Requirement or exclusion of inverted repeat sequences with cruciform-forming potential in Escherichia coli revealed by genome-wide analyses
Cited by: 10
Author(s): Osamu Miura, Toshihiro Ogake, Takashi Ohyama
Software Mentions: 1
Published: over 8 years ago

10.1007/s00294-018-0907-8

A strong structural correlation between short inverted repeat sequences and the polyadenylation signal in yeast and nucleosome exclusion by these inverted repeats
Cited by: 5
Author(s): Osamu Miura, Toshihiro Ogake, Hiroki Yoneyama, Yo Kikuchi, Takashi Ohyama
Software Mentions: 1
Published: almost 8 years ago

10.1093/dnares/dsu020

A High-Density Genetic Map with Array-Based Markers Facilitates Structural and Quantitative Trait Locus Analyses of the Common Wheat Genome
Cited by: 28
Author(s): Julio C. M. Iehisa, Ryoko Ohno, Tatsuro Kimura, Hiroyuki Enoki, Satoru Nishimura, Yuki Okamoto, Shuhei Nasuda, Shigeo Takumi
Software Mentions: 1
Published: over 12 years ago

10.1093/dnares/dsu016

Evolutionary History of Trihelix Family and Their Functional Diversification
Cited by: 45
Author(s): Yao Qin, Xin Ma, Guanghui Yu, Qi Wang, Liang Wang, Lingrang Kong, Wook Kim, Hong W ei Wang
Software Mentions: 1
Published: over 12 years ago

10.1093/dnares/dst039

Development of 5123 Intron-Length Polymorphic Markers for Large-Scale Genotyping Applications in Foxtail Millet
Cited by: 98
Author(s): Mehanathan Muthamilarasan, Venkata Suresh Bonthala, Garima Pandey, Kajal Kumari, Swarup K. Parida
Software Mentions: 1
Published: about 13 years ago

10.1016/j.dib.2019.104203

Genome-wide copy number variant data for inflammatory bowel disease in a caucasian population
Cited by: 0
Author(s): Svetlana Frenkel, Çharles N. Bernstein, Yong Won Jin, Michael Sargent, Qin Kuang, Wenxin Jiang, John Wei, Bhooma Thiruvahindrapuram, Stephen W. Scherer, Pingzhao Hu
Software Mentions: 1
Published: about 7 years ago

10.1016/j.dib.2020.106341

Genome sequencing data for wild and cultivated bananas, plantains and abacá
Cited by: 4
Author(s): Christine Sambles, Lakshmipriya Venkatesan, Olanrewaju M. Shittu, James W. Harrison, Karen Moore, Leena Tripathi, Murray Grant, Rachel Warmington, David J. Studholme
Software Mentions: 1
Published: almost 6 years ago

10.1093/database/bav124

CCSI: a database providing chromatin–chromatin spatial interaction information
Cited by: 13
Author(s): Xiaowei Xie, Wenbin Ma, Zhou Songyang, Zhenhua Luo, Junfeng Huang, Zhiming Dai, Yuanyan Xiong
Software Mentions: 1
Published: almost 11 years ago

10.1002/ece3.3762

Genome-wide identification, expression profiling, and target gene analysis of microRNAs in the Onion thrips,<i>Thrips tabaci</i>Lindeman (Thysanoptera: Thripidae), vectors of tospoviruses (Bunyaviridae)
Cited by: 8
Author(s): K. B. Rebijith, R. Asokan, Ranjitha H. Hande, S. J. Gawande, N. K. Krishna Kumar
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.5620

Analysis of new retrogenes provides insight into dog adaptive evolution
Cited by: 6
Author(s): Xiang Gao, Yan Li, Adeyinka Abiola Adetula, Yu Wei Wu, Hong Chen
Software Mentions: 1
Published: about 7 years ago

10.1080/22221751.2020.1852058

Prolonged shedding of severe acute respiratory syndrome coronavirus 2 in patients with COVID-19
Cited by: 63
Author(s): Qian Li, Xiao Zheng, Xu Shen, Rui Hao, Xi Wang, Qi Wang, Bei Li, Wei Zhang, Yan Zhu, Ruijiao Jiang, Kai Zhao, Hui Wang, Zheng Li Shi, Hui Lan Zhang, Rong Du, Peng Zhou
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13072-016-0068-2

The chicken erythrocyte epigenome
Cited by: 23
Author(s): Sanzida Jahan, Wayne Xu, Shihua He, Carolina González, Geneviève P. Delcuve, James R. Davie
Software Mentions: 1
Published: over 10 years ago

10.1038/ejhg.2017.128

The Y chromosome: a blueprint for men’s health?
Cited by: 85
Author(s): Akhlaq Ahmed Maan, James Eales, Artur Akbarov, Joshua Rowland, Xiaoguang Xu, Mark A. Jobling, Fadi J. Charchar, Maciej Tomaszewski
Software Mentions: 1
Published: about 9 years ago

10.1038/s41431-019-0343-3

Using dried blood spot samples from a trio for linked-read whole-exome sequencing
Cited by: 6
Author(s): Ólavur Mortensen, Leivur N. Lydersen, Katrin Didriksen Apol, Guðrið Andorsdóttir, Bjarni á Steig, Noomi Gregersen
Software Mentions: 1
Published: over 7 years ago

10.1111/eva.13062

Application of simultaneous selective pressures slows adaptation
Cited by: 0
Author(s): Lauren M.F. Merlo, Kathleen Sprouffske, Taylor C. Howard, Kristin L. Gardiner, Aleah F. Caulin, Steven M. Blum, Perry Evans, Antonio Bedalov, Paul D. Sniegowski, Carlo C. Maley
Software Mentions: 1
Published: about 6 years ago

10.12688/f1000research.2-258.v1

C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison
Cited by: 28
Author(s): Ilya Minkin, Hoa Pham, Ekaterina V. Starostina, Nikolay Vyahhi, Son Pham
Software Mentions: 1
Published: almost 13 years ago

10.12688/f1000research.14383.1

Case Report: Exome sequencing reveals recurrent RETSAT mutations and a loss-of-function POLDIP2 mutation in a rare undifferentiated tongue sarcoma
Cited by: 9
Author(s): Jason Ying Kuen Chan, P.W.F. Poon, Yong Zhang, Cherrie W K Ng, Wen Piao, Meng Ma, Kevin Y. Yip, Amy B.W. Chan, Vivian Wai Yan Lui
Software Mentions: 1
Published: over 8 years ago

10.3390/foods10081701

Codesign of Food System and Circular Economy Approaches for the Development of Livestock Feeds from Insect Larvae
Cited by: 20
Author(s): Sandeep Jagtap, Guillermo García-García, Linh Duong, Mark Swainson, Wayne Martindale
Software Mentions: 1
Published: about 5 years ago

10.3389/fnagi.2021.706765

Identification of Gut Microbiome Signatures in Patients With Post-stroke Cognitive Impairment and Affective Disorder
Cited by: 10
Author(s): Yinting Huang, Zibin Shen, Wenzhen He
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.670145

The Inhibition of B7H3 by 2-HG Accumulation Is Associated With Downregulation of VEGFA in IDH Mutated Gliomas
Cited by: 3
Author(s): Mengli Zhang, Huaichao Zhang, Minjie Fu, Jingwen Zhang, Cheng Zhang, Yingying Lv, Fengfeng Fan, Jinsen Zhang, Hao Xu, Dan Ye, Hui Yang, Wei Hua, Ying Mao
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2021.629116

Characterization of a Deep Sea Bacillus toyonensis Isolate: Genomic and Pathogenic Features
Cited by: 11
Author(s): Jing-Chang Luo, Heng Long, Jian Zhang, Yan Zhao, Li Sun
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2019.00183

A First Study of the Virulence Potential of a Bacillus subtilis Isolate From Deep-Sea Hydrothermal Vent
Cited by: 32
Author(s): Hanjie Gu, Qinglei Sun, Jing-Chang Luo, Jian Zhang, Li Sun
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2019.00370

Characterization of the Genome Feature and Toxic Capacity of a Bacillus wiedmannii Isolate From the Hydrothermal Field in Okinawa Trough
Cited by: 11
Author(s): Yan Zhao, Chen Chen, Hanjie Gu, Jian Zhang, Li Sun
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2018.00373

pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System
Cited by: 8
Author(s): Agnieszka Wróbel, Claudio Ottoni, Jack C. Leo, Dirk Linke
Software Mentions: 1
Published: almost 8 years ago

10.3389/fncom.2017.00037

Examining Brain Morphometry Associated with Self-Esteem in Young Adults Using Multilevel-ROI-Features-Based Classification Method
Cited by: 2
Author(s): Bo Peng, Jieru Lu, Aditya Saxena, Zhengxin Zhou, Tao Zhang, Suhong Wang, Yakang Dai
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2020.550677

Identification and Expression Analysis of the CsMYB Gene Family in Root Knot Nematode-Resistant and Susceptible Cucumbers
Cited by: 9
Author(s): Chunyan Cheng, Qingrong Li, Xing Wang, Ying Li, Chuntao Qian, Ji Li, Qunfeng Lou, Molly M. Jahn, Jinfeng Chen
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2014.00163

Evolution of genomic structural variation and genomic architecture in the adaptive radiations of African cichlid fishes
Cited by: 22
Author(s): Shaohua Fan, Axel Meyer
Software Mentions: 1
Published: over 12 years ago

10.3389/fgene.2019.01288

N6-Methyladenine DNA Modification in the Woodland Strawberry (Fragaria vesca) Genome Reveals a Positive Relationship With Gene Transcription
Cited by: 12
Author(s): Shuang Xie, Jian-Feng Xing, Xiaoming Zhang, Zhaoyu Liu, Meiwei Luan, Jie Zhu, Ling Peng, Chuan-Le Xiao, Xiqiang Song, Jun Zheng, Ying Chen
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2020.00729

Characteristics and Mutational Hotspots of Plastomes in Debregeasia (Urticaceae)
Cited by: 15
Author(s): Ruonan Wang, Richard I. Milne, Xin Du, Jie Liu, Zeng-Yuan Wu
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.732812

Genome-Wide Analysis of the HSP20 Gene Family and Expression Patterns of HSP20 Genes in Response to Abiotic Stresses in Cynodon transvaalensis
Cited by: 11
Author(s): Fengchao Cui, Geli Taier, Xiangfeng Wang, Kehua Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.630292

Genome-Wide Identification of NAC Transcription Factors and Their Functional Prediction of Abiotic Stress Response in Peanut
Cited by: 17
Author(s): Pengxiang Li, Zhenying Peng, Pingli Xu, Guiying Tang, Changle Ma, Jieqiong Zhu, Lei Shan, Shubo Wan
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00737

A Survey of Copy Number Variation in the Porcine Genome Detected From Whole-Genome Sequence
Cited by: 16
Author(s): Brittney N Keel, Dan Nonneman, A. K. Lindholm‐Perry, W. T. Oliver, G. A. Rohrer
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2019.01276

Genome-Wide Identification, Characterization, and Transcript Analysis of the TCP Transcription Factors in Vitis vinifera
Cited by: 23
Author(s): Songtao Jiu, Yan Xu, Jiyuan Wang, Lei Wang, Shiping Wang, Chao Ma, Le Guan, Muhammad Abdullah, Maoxiang Zhao, Wenping Xu, Wenxue Ma, Caixi Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2020.570156

Genome-Wide Identification and Characterization of the bHLH Transcription Factor Family in Pepper (Capsicum annuum L.)
Cited by: 22
Author(s): Zhishuo Zhang, Juan Chen, Chengliang Liang, Feng Liu, Xilin Hou, Xuexiao Zou
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2018.00281

Genome Wide Identification of Novel Long Non-coding RNAs and Their Potential Associations With Milk Proteins in Chinese Holstein Cows
Cited by: 23
Author(s): Wentao Cai, Cong Li, Shuli Liu, Chixing Zhou, Hongwei Yin, Jiuzhou Song, Qin Zhang, Shengli Zhang
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2018.00690

Target of Rapamycin (TOR) Regulates the Expression of lncRNAs in Response to Abiotic Stresses in Cotton
Cited by: 19
Author(s): Yun Song, Linxuan Li, Zhaoen Yang, Ge Zhao, Xueyan Zhang, Lingling Wang, Lei Zheng, Fei Zhuo, Huan Yin, Xiaoyang Ge, Chaojun Zhang, Zuoren Yang, Maozhi Ren
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2012.00299

Identifying putative breast cancer-associated long intergenic non-coding RNA loci by high density SNP array analysis
Cited by: 6
Author(s): Zhengyu Jiang, Yan Zhou, Karthik Devarajan, Carolyn Slater, Mary B. Daly, Xiaowei Chen
Software Mentions: 1
Published: almost 15 years ago

10.3389/fgene.2021.538733

Genome-Wide Analysis of Dof Genes and Their Response to Abiotic Stress in Rose (Rosa chinensis)
Cited by: 10
Author(s): Hong Nan, Richard A. Ludlow, Min Lü, Hongyu An
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00822

Genomics and Virulence of Fonsecaea pugnacius, Agent of Disseminated Chromoblastomycosis
Cited by: 5
Author(s): Amanda Bombassaro, Gabriela Xavier Schneider, Flávia F. Costa, Aniele Carolina Ribas Leão, Bruna da Silva Soley, Fernanda Medeiros, Nickolas M da Silva, Bruna Jacomel Favoreto de Souza Lima, Raffael Júnio Araújo de Castro, Anamélia Lorenzetti Bocca, Valter A. Baura, Eduardo Balsanelli, Vânia C. S. Pankievicz, Nyvia Milicio Coblinski Hrysay, Rosana Hermínia Scola, Leandro Ferreira Moreno, Conceição M. P. S. de Azevedo, Emanuel Maltempi de Souza, Renata Rodrigues Gomes, Sybren de Hoog, Vânia Aparecida Vicente
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2020.00086

Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.)
Cited by: 14
Author(s): D.S. Kishor, Jeonghwan Seo, Joong Hyoun Chin, Hee‐Jong Koh
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.660428

A Population-Specific Major Allele Reference Genome From The United Arab Emirates Population
Cited by: 9
Author(s): Gihan Daw Elbait, Andreas Henschel, Guan K. Tay, Habiba S. Al Safar
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.658148

Mungbean DIRIGENT Gene Subfamilies and Their Expression Profiles Under Salt and Drought Stresses
Cited by: 5
Author(s): Wenying Xu, Tong Liu, Huiying Zhang, Hong Zhu
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.00980

Identification and Analysis of the GASR Gene Family in Common Wheat (Triticum aestivum L.) and Characterization of TaGASR34, a Gene Associated With Seed Dormancy and Germination
Cited by: 26
Author(s): Xinran Cheng, Shengxing Wang, Dongmei Xu, Liyan Xue, Xinyu Li, Weiwei Xiao, Junhui Cao, Hao Jiang, Xiaoyu Min, Jianfeng Wang, Haiping Zhang, Cheng Chang, Jie Lu, Chunyan Ma
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2020.609184

Genome-Wide Characterization of the HSP20 Gene Family Identifies Potential Members Involved in Temperature Stress Response in Apple
Cited by: 22
Author(s): Feng Yao, Chunhui Song, Hongtao Wang, Shangwei Song, Jian Jiao, Miaomiao Wang, Xianbo Zheng, Tuanhui Bai
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2014.00183

YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps
Cited by: 0
Author(s): Keith Batesole, Kokulapalan Wimalanathan, Lin Liu, Fan Zhang, Craig S. Echt, Chun Liang
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2020.610395

Comparative Methylome Analysis of Campylobacter jejuni Strain YH002 Reveals a Putative Novel Motif and Diverse Epigenetic Regulations of Virulence Genes
Cited by: 3
Author(s): Sandeep Ghatak, Cheryl M. Armstrong, Sandra M. Reed, Yiping He
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.677654

Revealing Microbiome Structure and Assembly Process in Three Rhizocompartments of Achyranthes bidentata Under Continuous Monoculture Regimes
Cited by: 3
Author(s): Juanying Wang, Hongmiao Wu, Linkun Wu, Ye Liu, Puleng Letuma, Xianjin Qin, Ting Chen, Christopher Rensing, Shan Lin, Wenxiong Lin
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.00137

The DNA Methylome of the Hyperthermoacidophilic Crenarchaeon Sulfolobus acidocaldarius
Cited by: 23
Author(s): Mohea Couturier, Ann-Christin Lindås
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2016.01756

Genome Sequence of Pseudomonas koreensis CRS05-R5, an Antagonistic Bacterium Isolated from Rice Paddy Field
Cited by: 13
Author(s): Haiyan Lin, Shikai Hu, Ruifang Liu, Ping Chen, Changwei Ge, Bo Zhu, Longbiao Guo
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2019.02194

Genomic Characterization of the Periwinkle Leaf Yellowing (PLY) Phytoplasmas in Taiwan
Cited by: 19
Author(s): Shu-Ting Cho, Chan‐Pin Lin, Chih-Horng Kuo
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.03129

A Resequencing-Based Ultradense Genetic Map of Hericium erinaceus for Anchoring Genome Sequences and Identifying Genetic Loci Associated With Monokaryon Growth
Cited by: 7
Author(s): Wànkuí Gǒng, Conghua Xie, Yingjun Zhou, Zuohua Zhu, Yahui Wang, Yu Peng
Software Mentions: 1
Published: over 6 years ago