10.3390/ijms20112730

The Class III Peroxidase (POD) Gene Family in Cassava: Identification, Phylogeny, Duplication, and Expression
Cited by: 27
Author(s): Chunlai Wu, Xuezhi Ding, Zehong Ding, Weiwei Tie, Yan Yan, Yu Wang, Hai Yang, Wei Hu
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20112771

Transcriptome Profile Analysis of Winter Rapeseed (Brassica napus L.) in Response to Freezing Stress, Reveal Potentially Connected Events to Freezing Stress
Cited by: 38
Author(s): Yuanyuan Pu, Lijun Liu, Junyan Wu, Yang Zhao, Jing Bai, Lan Ma, Jinli Yue, Jiaojiao Jin, Zaoxia Niu, Yan Fang, Weizheng Sun
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20123053

Whole Genome Sequencing and Analysis of Chlorimuron-Ethyl Degrading Bacteria Klebsiella pneumoniae 2N3
Cited by: 7
Author(s): Cheng Zhang, Qingkai Hao, Zhengyi Zhang, Xianghui Zhang, Hongyu Pan, Jiahuan Zhang, Hao Zhang, Fengjie Sun
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20133180

Genome-Wide Identification and Expression Profiling of the Polygalacturonase (PG) and Pectin Methylesterase (PME) Genes in Grapevine (Vitis vinifera L.)
Cited by: 31
Author(s): Nadeem Khan, Fizza Fatima, Muhammad Salman Haider, Hamna Shazadee, Zhongjie Liu, Ting Zheng, Jinggui Fang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20174319

Identification and Functional Analysis of the CLAVATA3/EMBRYO SURROUNDING REGION (CLE) Gene Family in Wheat
Cited by: 15
Author(s): Zheng Li, Dan Liú, Yu Xia, Ziliang Li, Na Niu, Shen Ma, Junwei Wang, Yulong Song, Gaisheng Zhang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174103

Systematic Analysis of Differentially Expressed Maize ZmbZIP Genes between Drought and Rewatering Transcriptome Reveals bZIP Family Members Involved in Abiotic Stress Responses
Cited by: 22
Author(s): Liru Cao, LU Xin-shi, Pengyu Zhang, Guorui Wang, Wei Li, Tongchao Wang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174115

Identification and in Silico Characterization of GT Factors Involved in Phytohormone and Abiotic Stresses Responses in Brachypodium distachyon
Cited by: 0
Author(s): Feng Wen, Li Xu, Yuebin Xie, Liwen Liang, Ming Jia, Xinsheng Liu, Xiaozhu Wu
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20184553

Genomic Organization of the B3-Domain Transcription Factor Family in Grapevine (Vitis vinifera L.) and Expression during Seed Development in Seedless and Seeded Cultivars
Cited by: 28
Author(s): Bilal Ahmad, Songlin Zhang, Jin Yao, Mati Ur Rahman, Muhammad Hanif, Yanxun Zhu, Xiping Wang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20235974

Genome-Wide Identification and Analysis of the NPR1-Like Gene Family in Bread Wheat and Its Relatives
Cited by: 13
Author(s): Xian Liu, Zhiguo Liu, Xinhui Niu, Qian Xu, Long Yang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20246167

Genome-Wide Identification and Expression Analysis of the Ascorbate Oxidase Gene Family in Gossypium hirsutum Reveals the Critical Role of GhAO1A in Delaying Dark-Induced Leaf Senescence
Cited by: 9
Author(s): Ze Ya Pan, Lihua Chen, Fei Wang, Wangyang Song, Aiping Cao, Shuangquan Xie, Xifeng Chen, Xiang Jin, Hongbin Li
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21010321

Histone Deacetylase (HDAC) Gene Family in Allotetraploid Cotton and Its Diploid Progenitors: In Silico Identification, Molecular Characterization, and Gene Expression Analysis under Multiple Abiotic Stresses, DNA Damage and Phytohormone Treatments
Cited by: 20
Author(s): Muhammad Imran, Sarfraz Shafiq, Muhammad Kashif Naeem, Émilie Widemann, Muhammad Zeeshan Munir, Kevin B. Jensen, Richard R.‐C. Wang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21020628

Placenta-Specific Genes, Their Regulation During Villous Trophoblast Differentiation and Dysregulation in Preterm Preeclampsia
Cited by: 24
Author(s): András Szilágyi, Zsolt Gelencser, Roberto Romero, Yi Xu, Péter Király, Attila Demeter, János Pálhalmi, Balázs Győrffy, Kata Juhász, Petronella Hupuczi, Katalin A. Kékesi, Gerold Meinhardt, Zoltán Papp, Sorin Drăghici, Offer Erez, Adi L. Tarca, Martin Knöfler, Nándor Gábor Than
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21020608

Genome-Wide Investigation of Heat Shock Transcription Factor Family in Wheat (Triticum aestivum L.) and Possible Roles in Anther Development
Cited by: 23
Author(s): Jiali Ye, Xiaohong R. Yang, Hu Gan, Qi Liu, Wei Li, Lingli Zhang, Xiyue Song
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21020634

Genome-Wide Identification and Characterization of the NAC Transcription Factor Family in Musa Acuminata and Expression Analysis during Fruit Ripening
Cited by: 32
Author(s): Bin Li, Ruiyi Fan, Qiaosong Yang, Chunhua Hu, Ou Sheng, Guiming Deng, Tingting Dong, Chunyu Li, Xinxiang Peng, Fangcheng Bi, Ganjun Yi
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21031000

Comprehensive Profiling of Tubby-Like Protein Expression Uncovers Ripening-Related TLP Genes in Tomato (Solanum lycopersicum)
Cited by: 15
Author(s): Yaoxin Zhang, Xiaoqing He, Dan Su, Feng Yuan, Haochen Zhao, Heng Deng, Mingchun Liu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21041293

Characterization of the OFP Gene Family and its Putative Involvement of Tuberous Root Shape in Radish
Cited by: 8
Author(s): Yanping Wang, Qingbiao Wang, Hao Wu, Honghe Sun, Li Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21124436

The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase
Cited by: 8
Author(s): Xianjun Li, Junhuan Wang, Jia Yang, Aikebaier Reheman, Yanchun Yan
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21155344

Identification and Expression Analysis of Hormone Biosynthetic and Metabolism Genes in the 2OGD Family for Identifying Genes That May Be Involved in Tomato Fruit Ripening
Cited by: 6
Author(s): Qiangqiang Ding, Zhen Wang, Juan Xue, Xinxin Yang, Jun Fan, Hong Chen, Yang Li, Hongmiao Wu
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21175947

Genome-Wide Systematic Characterization of the NPF Family Genes and Their Transcriptional Responses to Multiple Nutrient Stresses in Allotetraploid Rapeseed
Cited by: 22
Author(s): Hao Zhang, Shuang Li, M. Shi, Sheliang Wang, Lei Shi, Fangsen Xu, Guangda Ding
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186729

Whole-Genome Sequencing Analysis of Quorum Quenching Bacterial Strain Acinetobacter lactucae QL-1 Identifies the FadY Enzyme for Degradation of the Diffusible Signal Factor
Cited by: 13
Author(s): Yao Tian, Tianxing Zhou, Xudan Xu, Wenping Zhang, Xinghui Fan, Sandhya Mishra, Lian-Hui Zhang, Xin Zhou, Shaohua Chen
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186709

Identification, Characterization, and Genomic Analysis of Novel Serratia Temperate Phages from a Gold Mine
Cited by: 11
Author(s): Katarzyna Bujak, Przemysław Decewicz, Jacek Kamiński, Monika Radlińska
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21217876

Dual Effect of Soloxolone Methyl on LPS-Induced Inflammation In Vitro and In Vivo
Cited by: 9
Author(s): Andrey Markov, Aleksandra V. Sen’kova, Valeriya O. Babich, Kirill V. Odarenko, Vadim A Talyshev, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218064

An Earliest Endosymbiont, Wolbachia massiliensis sp. nov., Strain PL13 from the Bed Bug (Cimex hemipterus), Type Strain of a New Supergroup T
Cited by: 20
Author(s): Younes Laidoudi, Anthony Levasseur, Hacène Medkour, Mossaab Maaloum, Mariem Ben Khedher, Masse Sambou, Hubert Bassène, Bernard Davoust, Florence Fénollar, Didier Raoult, Oleg Mediannikov
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218262

Genome-Wide Identification and Functional Characterization of the Cation Proton Antiporter (CPA) Family Related to Salt Stress Response in Radish (Raphanus sativus L.)
Cited by: 18
Author(s): Yan Wang, Jiali Ying, Zhangping Yang, Liang Xu, Wanting Zhang, Meng Ni, Yuelin Zhu, Liwang Liu
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21228639

Whole Genome Sequencing and Tn5-Insertion Mutagenesis of Pseudomonas taiwanensis CMS to Probe Its Antagonistic Activity Against Rice Bacterial Blight Disease
Cited by: 1
Author(s): Wen-Jen Chen, Tzu-Yen Kuo, Chun-Yi Chen, Feng-Chia Hsieh, Yu Liang Yang, Je-Ruei Liu, Ming-Che Shih
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22052699

Genome Wide Analysis of U-Box E3 Ubiquitin Ligases in Wheat (Triticum aestivum L.)
Cited by: 14
Author(s): Dae Yeon Kim, Yong Jin Lee, Min Jeong Hong, Jae Ho Kim, Yong Weon Seo
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22062821

Genome-Wide Identification and Characterization of AP2/ERF Transcription Factor Family Genes in Oil Palm under Abiotic Stress Conditions
Cited by: 14
Author(s): Lixia Zhou, Rajesh Yarra
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22094625

Genome-Wide Analysis, Evolutionary History and Response of ALMT Family to Phosphate Starvation in Brassica napus
Cited by: 0
Author(s): Ismail Din, Ihteram Ullah, Wei Wang, Hao Zhang, Lei Shi
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22126585

Genome-Wide Identification, Diversification, and Expression Analysis of Lectin Receptor-Like Kinase (LecRLK) Gene Family in Cucumber under Biotic Stress
Cited by: 10
Author(s): Muhammad Salman Haider, Savitha De Britto, Geetha Nagaraj, Gurulingaiah Bhavya, Ravikant Shekhar, Itó S, Sudisha Jogaiah
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22179651

Genome-Wide Identification and Analysis of the Metallothionein Genes in Oryza Genus
Cited by: 6
Author(s): Ming Huei Cheng, Huanran Yuan, Ruihua Wang, Jianing Zou, Ting Liang, Fang Yang, Shaoqing Li
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22189862

Identification of FadT as a Novel Quorum Quenching Enzyme for the Degradation of Diffusible Signal Factor in Cupriavidus pinatubonensis Strain HN-2
Cited by: 5
Author(s): Xudan Xu, Yongsheng Tian, Wenping Zhang, Tianxing Zhou, Xin Zhou, Weigang Dai, Shaohua Chen
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms221810056

Identification and Characterization of Novel circRNAs Involved in Muscle Growth of Blunt Snout Bream (Megalobrama amblycephala)
Cited by: 3
Author(s): Lifang Liu, Yulong Chen, Jinghan Diao, Le Luo, Zexia Gao
Software Mentions: 1
Published: about 5 years ago

10.1007/s11060-020-03631-4

Gamma Knife Radiosurgery does not alter the copy number aberration profile in sporadic vestibular schwannoma
Cited by: 1
Author(s): Aril Løge Håvik, Ove Bruland, Dhanushan Dhayalan, Morten Lund‐Johansen, Per-Morten Knappskog
Software Mentions: 1
Published: about 6 years ago

10.1016/j.isci.2020.101241

ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era
Cited by: 49
Author(s): Songtao Gui, L. Yang, Jianbo Li, Jingyun Luo, Xiaokai Xu, Jianyu Yuan, Lu Chen, Wenqiang Li, Xin Yang, Shenshen Wu, Shuyan Li, Yuebin Wang, Yabing Zhu, Qiang Gao, Ning Yang, Jianbing Yan
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.7817

Identification of FGF19 as a prognostic marker and potential driver gene of lung squamous cell carcinomas in Chinese smoking patients
Cited by: 27
Author(s): Qiang Tan, Li Fan, Guan Wang, Weiliang Xia, Ziming Li, Xiaomin Niu, Wei Ji, Hong Ye, Qiang Xu, Qingquan Luo, Jie Zhang, Shun Lü
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.8002

Determination of somatic oncogenic mutations linked to target-based therapies using MassARRAY technology
Cited by: 10
Author(s): Maider Ibarrola‐Villava, Tania Fleitas, Marta J. Llorca-Cardeñosa, Cristina Mongort, Elisa Alonso, Samuel Navarro, Octavio Burgués, Ana Vivancos, Juan Miguel Cejalvo, Jose Alejandro Pérez-Fidalgo, Susana Roselló, Gloría Ribas, Andrés Cervantes
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.8322

Transcriptome-wide analysis of compression-induced microRNA expression alteration in breast cancer for mining therapeutic targets
Cited by: 23
Author(s): Baek Gil Kim, Suki Kang, Hyunho Han, Juhyun Lee, Ji Eun Kim, Sung Hwan Lee, Nam Hoon Cho
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.9080

EphB6 overexpression and <i>Apc</i> mutation together promote colorectal cancer
Cited by: 19
Author(s): Da Xu, Long Yuan, Xin Liu, Mingqi Li, Fubin Zhang, Xin Gu, Dongwei Zhang, Youlin Yang, Binbin Cui, Jinxue Tong, Jin Zhou, Zhiwei Yu
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.9077

Th17 cytokine differentiation and loss of plasticity after SOCS1 inactivation in a cutaneous T-cell lymphoma
Cited by: 16
Author(s): Stefan Ehrentraut, Björn Schneider, Stefan Nagel, Claudia Pommerenke, Hilmar Quentmeier, Robert Geffers, Maren Feist, Maren Kaufmann, Corinna Meyer, Marshall E. Kadin, Hans Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.10534

The prognostic value of a seven-microRNA classifier as a novel biomarker for the prediction and detection of recurrence in glioma patients
Cited by: 21
Author(s): Wanghao Chen, Qiang Yu, Bin Chen, Xingyu Lu, Qiaoyu Li
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.10778

Genomic complexity and dynamics of clonal evolution in childhood acute myeloid leukemia studied with whole-exome sequencing
Cited by: 22
Author(s): Riccardo Masetti, Ilaria Castelli, Annalisa Astolfi, Salvatore Nicola Bertuccio, Valentina Indio, Marco Togni, Tamara Belotti, Salvatore Serravalle, Giuseppe Tarantino, Marco Zecca, Martina Pigazzi, Giuseppe Basso, Andrea Pession, Franco Locatelli
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.13642

New differentially expressed genes and differential DNA methylation underlying refractory epilepsy
Cited by: 31
Author(s): Xi Liu, Shu Ou, Tao Xu, Shiyong Liu, Jinxian Yuan, Hao Huang, Qiong Lu, Hui Yang, Lifen Chen, Xu Tan, Yangmei Chen
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.15043

Whole-genome sequencing identifies new genetic alterations in meningiomas
Cited by: 16
Author(s): Ming Tang, Wei Heng, Lu Han, Jiaojiao Deng, Yuelong Wang, Meng Yang, YH Tang, Gang Guo, Liangxue Zhou, Aiping Tong
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.15428

Whole genome sequencing of matched tumor, adjacent non-tumor tissues and corresponding normal blood samples of hepatocellular carcinoma patients revealed dynamic changes of the mutations profiles during hepatocarcinogenesis
Cited by: 8
Author(s): Rong Mao, Jie Liu, Guanfeng Liu, Shanshan Jin, Quan Xue, Liang Ma, Yan Fu, Na Zhao, Jinliang Xing, Lanjuan Li, Yunqing Qiu, Biaoyang Lin
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.16442

Circular RNA alterations are involved in resistance to avian leukosis virus subgroup-J-induced tumor formation in chickens
Cited by: 47
Author(s): Xinheng Zhang, Yongde Yan, Xiaoya Lei, Aijun Li, Huanmin Zhang, Zhenkai Dai, Xinjian Li, Weiguo Chen, Wencheng Lin, Feng Chen, Jingyun Ma, Qingmei Xie
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.16781

Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes
Cited by: 21
Author(s): Madalene A. Earp, Raghavan Rama, Qian Li, Junqiang Dai, Stacey J. Winham, Julie M. Cunningham, Yanina Natanzon, Kimberly R. Kalli, Xiaonan Hou, S. John Weroha, Paul Haluska, Kate Lawrenson, Simon A. Gayther, Chen Wang, Ellen L. Goode, Brooke L. Fridley
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18362

Differentially expressed lncRNAs and miRNAs with associated ceRNA networks in aged mice with postoperative cognitive dysfunction
Cited by: 41
Author(s): Changwei Wei, Ting Luo, Sheng Zou, Xiujuan Zhou, Wenzhen Shen, Xiaolin Ji, Qi Li, Anshi Wu
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.27085

Deep insights into the response of human cervical carcinoma cells to a new cyano enone-bearing triterpenoid soloxolone methyl: a transcriptome analysis
Cited by: 10
Author(s): Andrey Markov, Alexander Kel, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: about 7 years ago

10.1515/biol-2020-0032

Changes in the fecal microbiome of the Yangtze finless porpoise during a short-term therapeutic treatment
Cited by: 4
Author(s): Lei You, Congping Ying, Kai Li, Xizhao Zhang, Danqing Lin, Denghua Yin, Jialü Zhang, Pao Xu
Software Mentions: 1
Published: over 6 years ago

10.1186/1750-1172-8-33

Small cell ovarian carcinoma: genomic stability and responsiveness to therapeutics
Cited by: 38
Author(s): Lisa F Gamwell, Karen Gambaro, Maria Merziotis, Colleen Crane, Suzanna L. Arcand, Valerie Bourada, Christopher M. Davis, Jeremy A. Squire, David G. Huntsman, Patricia N. Tonin, Barbara C. Vanderhyden
Software Mentions: 1
Published: over 13 years ago

10.1128/JVI.02079-19

Kaposi’s Sarcoma-Associated Herpesvirus Lytic Replication Is Independent of Anaphase-Promoting Complex Activity
Cited by: 1
Author(s): Endrit Elbasani, Silvia Gramolelli, Thomas Guenther, Ildar Gabaev, Adam Grundhoff, Päivi M. Ojala
Software Mentions: 1
Published: over 6 years ago

10.1186/s12967-020-02480-z

The current landscape of coronavirus-host protein–protein interactions
Cited by: 62
Author(s): Laure Perrin-Cocon, Olivier Diaz, Clémence Jacquemin, Valentine Barthel, Eva Ogire, Christophe Ramière, Patrice André, Vincent Lotteau, Pierre‐Olivier Vidalain
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-77492-2

Genome skimming and exploration of DNA barcodes for Taiwan endemic cypresses
Cited by: 2
Author(s): Ching‐Yi Wu, Edi Sudianto, Yu-Mei Hung, Bo-Cyun Wang, Chin‐Cheng Huang, Chi-Tsong Chen, Shu‐Miaw Chaw
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-82584-8

Metagenomic analysis of the gut microbiome composition associated with vitamin D supplementation in Taiwanese infants
Cited by: 12
Author(s): Wei‐Te Lei, Kai-Yao Huang, Jhih-Hua Jhong, Chia-Hung Chen, Shun-Long Weng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-020-80627-0

Analysis of Fox genes in Schmidtea mediterranea reveals new families and a conserved role of Smed-foxO in controlling cell death
Cited by: 9
Author(s): Eudald Pascual-Carreras, Carlos Herrera-Úbeda, Maria Rosselló, Pablo Coronel-Córdoba, Jordi Garcia‐Fernàndez, Emili Saló, Teresa Adell
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-82857-2

In silico identification of natural products from Traditional Chinese Medicine for cancer immunotherapy
Cited by: 13
Author(s): Chuipu Cai, Qihui Wu, Honghai Hong, Lin He, Zhihong Liu, Yong Gu, Shijie Zhang, Qi Wang, Xiude Fan, Jiansong Fang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84286-7

Complete genome sequencing of Bacillus sp. TK-2, analysis of its cold evolution adaptability
Cited by: 9
Author(s): Lijun Shen, Xueli Zang, Ke Sun, Huan Chen, Xinying Che, Yansong Sun, Gang Wang, Sitong Zhang, Guang Chen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84778-6

Structural characterization and duplication modes of pseudogenes in plants
Cited by: 11
Author(s): Flavia Mascagni, Gabriele Usai, Andrea Cavallini, Andrea Porceddu
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85754-w

Genome-wide characterization and analysis of bHLH transcription factors related to anthocyanin biosynthesis in spine grapes (Vitis davidii)
Cited by: 24
Author(s): Ming Li, Lina Sun, Hongcang Gu, Dawei Cheng, Xiaoxia Guo, Rui Chen, Zhiyong Wu, Jianfu Jiang, Xiucai Fan, Jinyong Chen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-86838-3

Genome-wide discovery of G-quadruplexes in barley
Cited by: 14
Author(s): H Busra Cagirici, Hikmet Budak, Taner Z. Sen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87722-w

Comprehensive molecular dissection of TIFY Transcription factors reveal their dynamic responses to biotic and abiotic stress in wheat (Triticum aestivum L.)
Cited by: 14
Author(s): Poonam Singh, Kunal Mukhopadhyay
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-89900-2

The climatic and genetic heritage of Italian goat breeds with genomic SNP data
Cited by: 18
Author(s): Matteo Cortellari, Mario Barbato, Andrea Talenti, Arianna Bionda, Antonello Carta, Roberta Ciampolini, Elena Ciani, Alessandra Crisà, S. Frattini, Emiliano Lasagna, Donata Marletta, Salvatore Mastrangelo, Alessio Negro, Ettore Randi, Francesca Maria Sarti, Stefano Sartore, Dominga Soglia, Luigi Liotta, Alessandra Stella, Paolo Ajmone‐Marsan, Fabio Pilla, Licia Colli, P. Crepaldi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-92425-3

Genome-scale comparative analysis for host resistance against sea lice between Atlantic salmon and rainbow trout
Cited by: 6
Author(s): Pablo Cáceres, Agustín Barría, Kris A. Christensen, Liane N. Bassini, Katharina Correa, Baltasar F. García, Jean Paul Lhorente, José M. Yáñez
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-93481-5

The mitochondrial genome of the grape powdery mildew pathogen Erysiphe necator is intron rich and exhibits a distinct gene organization
Cited by: 5
Author(s): Alex Z. Zaccaron, Jorge Teodoro de Souza, Ioannis Stergiopoulos
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-94109-4

Dynamic differential evolution schemes of WRKY transcription factors in domesticated and wild rice
Cited by: 3
Author(s): Anne J. Villacastin, Keeley S. Adams, Rin Boonjue, Paul J. Rushton, Mira V. Han, Jeffery Q. Shen
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-95899-3

Genome-wide identification and analysis of the heat shock transcription factor family in moso bamboo (Phyllostachys edulis)
Cited by: 18
Author(s): Bin Huang, Zhinuo Huang, Ruifang Ma, Jialu Chen, Zhijun Zhang, Kim Yrjälä
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-96133-w

Comparative genome analysis of Bacillus thuringiensis strain HD521 and HS18-1
Cited by: 2
Author(s): Hongwei Sun, Xiang Xiao, Qiao Li, Hui Lin, Xiaolin Wang, Jie Sun, Luo Lu, Aiping Zheng
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-97764-9

Deciphering complex genome rearrangements in C. elegans using short-read whole genome sequencing
Cited by: 8
Author(s): Tatiana Maroilley, Xiao Li, Matthew Oldach, Francesca Jean, Susan Stasiuk, Maja Tarailo‐Graovac
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-97691-9

Genome-wide identification, evolution, and transcript profiling of Aldehyde dehydrogenase superfamily in potato during development stages and stress conditions
Cited by: 6
Author(s): Md. Sifatul Islam, Md. Soyib Hasan, Md. Nazmul Hasan, Shamsul H. Prodhan, Tahmina Islam, Ajit Ghosh
Software Mentions: 1
Published: about 5 years ago

10.1155/2014/569324

VibrioBase: A Model for Next-Generation Genome and Annotation Database Development
Cited by: 4
Author(s): Siew Woh Choo, Hamed Heydari, Tze King Tan, Cheuk Chuen Siow, Ching Yew Beh, Wei Yee Wee, Naresh V.R. Mutha, George T.F. Wong, Mia Yang Ang, Amir Hessam Yazdi
Software Mentions: 1
Published: almost 13 years ago

10.1186/s40064-016-2647-x

Genome-wide identification of soybean WRKY transcription factors in response to salt stress
Cited by: 60
Author(s): Yanchong Yu, Nan Wang, Ruibo Hu, Fengning Xiang
Software Mentions: 1
Published: over 10 years ago

10.4056/sigs.28177

GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes
Cited by: 8
Author(s): Peter F. Hallin, Hans‐Henrik Stærfeldt, Eva Rotenberg, Tim T. Binnewies, Craig J. Benham, David W. Ussery
Software Mentions: 1
Published: about 17 years ago

10.1186/s40793-015-0106-x

Complete genome of Pseudomonas chlororaphis strain UFB2, a soil bacterium with antibacterial activity against bacterial canker pathogen of tomato
Cited by: 23
Author(s): Peng Deng, Xiaoqiang Wang, Sonya M. Baird, Shi‐En Lu
Software Mentions: 1
Published: almost 11 years ago

10.1186/s40793-016-0130-5

Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing
Cited by: 15
Author(s): Jun‐Yi Zhang, Rui Guan, Hu-Jun Zhang, Hua Li, Peng Xiao, Ge Yu, Lei Du, De-Min Cao, Bo Zhu, Renhui Li, Lu Zhang
Software Mentions: 1
Published: over 10 years ago

10.1186/s40793-016-0137-y

Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site
Cited by: 15
Author(s): Juliane Wissuwa, Runar Stokke, Anita-Elin Fedøy, Kjersti Lian, Arne O. Smalås, Ida Helene Steen
Software Mentions: 1
Published: over 10 years ago

10.1007/s13205-018-1140-3

Whole-genome resequencing and transcriptomic analysis of genes regulating anthocyanin biosynthesis in black rice plants
Cited by: 15
Author(s): Jae-Hyeon Oh, Yeji Lee, Eun-Ju Byeon, Byeong-Chul Kang, Dong-Soo Kyeoung, Chang-Kug Kim
Software Mentions: 1
Published: over 8 years ago

10.1186/s40793-016-0198-y

A draft genome sequence of Pseudomonas veronii R4: a grapevine (Vitis vinifera L.) root-associated strain with high biocontrol potential
Cited by: 11
Author(s): Christian Montes, Fabiola Altimira, Hayron Canchignia, Álvaro Castro, Evelyn Aparecida Mecenero Sanchez, María Miccono, Eduardo Tapia, Álvaro Sequeida, Jorge Hernández Valdés, Paz Tapia, Carolina González, Humberto Prieto
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13568-019-0733-5

In silico genome analysis reveals the metabolic versatility and biotechnology potential of a halotorelant phthalic acid esters degrading Gordonia alkanivorans strain YC-RL2
Cited by: 8
Author(s): Ruth Nahurira, Junhuan Wang, Yanchun Yan, Jia Yang, Shuanghu Fan, Ibatsam Khokhar, Adel Eltoukhy
Software Mentions: 1
Published: over 7 years ago

10.1186/s13568-019-0799-0

Genomic insights into a robust gamma-aminobutyric acid-producer Lactobacillus brevis CD0817
Cited by: 25
Author(s): Dandan Gao, Kunpeng Chang, Gongtao Ding, Hongjing Wu, Yuanhong Chen, Mengya Jia, Xiaohua Liu, Shuixing Wang, Yuyuan Jin, Hao Pan, Haixing Li
Software Mentions: 1
Published: over 7 years ago

10.1002/advs.202004222

Whole‐Genome Sequence of Synthesized Allopolyploids in <i>Cucumis</i> Reveals Insights into the Genome Evolution of Allopolyploidization
Cited by: 16
Author(s): Xiaqing Yu, Panqiao Wang, Ji Li, Qinzheng Zhao, Changmian Ji, Zhanguo Zhu, Yufei Zhai, Xiaodong Qin, Junguo Zhou, Haiyan Yu, Xin-Chao Cheng, Shiro Isshiki, Molly Jahn, Jeff J. Doyle, Carl‐Otto Ottosen, Yuling Bai, Qin-sheng Cai, Chunyan Cheng, Qunfeng Lou, Sanwen Huang, Jinfeng Chen
Software Mentions: 1
Published: over 5 years ago

10.18632/aging.102761

Circular RNA expression in isoproterenol hydrochloride-induced cardiac hypertrophy
Cited by: 15
Author(s): Minghui Yang, Hao Wang, Shengna Han, Xin Jia, Si Zhang, Fangyin Dai, Mengjiao Zhou, Zhongnan Yin, Tianqi Wang, Ming-Xi Zang, Lixiang Xue
Software Mentions: 1
Published: over 6 years ago

10.18632/aging.101693

Association of gut microbiota composition and function with a senescence-accelerated mouse model of Alzheimer’s Disease using 16S rRNA gene and metagenomic sequencing analysis
Cited by: 47
Author(s): Weijun Peng, Pan Yi, Jingjing Yang, Panpan Xu, Yang Wang, Zheyu Zhang, Siqi Huang, Zhe Wang, Chunhu Zhang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s42523-021-00108-1

Metatranscriptomic analysis of colonic microbiota’s functional response to different dietary fibers in growing pigs
Cited by: 11
Author(s): Jie Xu, Rongying Xu, Menglan Jia, Yong Su, Weiyun Zhu
Software Mentions: 1
Published: over 5 years ago

10.3390/ani11040936

The Effect of Infertility on the Liver Structure, Endocrinology, and Gene Network in Japanese Flounder
Cited by: 3
Author(s): Qi Mang, Jilun Hou, Han Tian, Guixing Wang, Yufen Wang, Yufeng Liu, Yuqin Ren, Yaxian Zhao, Zhongwei He, Xiaoyan Zhang
Software Mentions: 1
Published: over 5 years ago

10.3390/ani11072046

Genome of the Southern Giant Petrel Assembled Using Third-Generation DNA Sequencing and Linked Reads Reveals Evolutionary Traits of Southern Avian
Cited by: 1
Author(s): Sun‐Hee Kim, Seung Jae Lee, Euna Jo, Jangyeon Kim, Jong-U Kim, Jeong-Hoon Kim, Hyun Park, Young-Min Chi
Software Mentions: 1
Published: about 5 years ago

10.3390/ani9030090

Production Phase Affects the Bioaerosol Microbial&#x0D; Composition and Functional Potential in Swine&#x0D; Confinement Buildings
Cited by: 26
Author(s): Honglin Yan, Li Zhang, Zhendong Guo, Hongfu Zhang, Jingbo Liu
Software Mentions: 1
Published: over 7 years ago

10.3390/ani10061030

Chemical Composition of Milk and Rumen Microbiome Diversity of Yak, Impacting by Herbage Grown at Different Phenological Periods on the Qinghai-Tibet Plateau
Cited by: 21
Author(s): Qingshan Fan, Metha Wanapat, Fujiang Hou
Software Mentions: 1
Published: over 6 years ago

10.1093/aob/mcx149

Introgression of Aegilops speltoides segments in Triticum aestivum and the effect of the gametocidal genes
Cited by: 35
Author(s): Julie King, Surbhi Grewal, Caiyun Yang, Stella Hubbart‐Edwards, Duncan Scholefield, Stephen Ashling, John A. Harper, Alexandra M. Allen, Keith J. Edwards, Amanda Burridge, Ian P. King
Software Mentions: 1
Published: almost 9 years ago

10.3390/antibiotics10091097

Activation of Cryptic Antibiotic Biosynthetic Gene Clusters Guided by RNA-seq Data from Both Streptomyces ansochromogenes and ΔwblA
Cited by: 2
Author(s): Yue Li, Haiying Yu, Hanye Guan, Jingjing Li, Jihui Zhang, Hua Xiang, Jine Li, Huarong Tan
Software Mentions: 1
Published: about 5 years ago

10.3390/antibiotics7040101

Fighting Fire with Fire: Phage Potential for the Treatment of E. coli O157 Infection
Cited by: 12
Author(s): Cristina Howard-Varona, Dean Vik, Natalie Solonenko, Yueh Fen Li, M. Consuelo Gazitúa, Lauren Chittick, Jennifer Samiec, Aubrey E. Jensen, Patrick J. Anderson, Adrian Howard-Varona, Anika Kinkhabwala, Stephen T. Abedon, Matthew B. Sullivan
Software Mentions: 1
Published: almost 8 years ago

10.1128/AEM.02655-17

Transferable Plasmid-Borne <i>mcr-1</i> in a Colistin-Resistant Shigella flexneri Isolate
Cited by: 13
Author(s): Beibei Liang, Adam P. Roberts, Xuebin Xu, Chaojie Yang, Xiaoxia Yang, Jinyan Wang, Shengjie Yi, Yongrui Li, Qiuxia Ma, Fuli Wu, Shaofu Qiu, Hongbin Song
Software Mentions: 1
Published: over 8 years ago

10.1128/AEM.02089-18

Periodic and Spatial Spreading of Alkanes and <i>Alcanivorax</i> Bacteria in Deep Waters of the Mariana Trench
Cited by: 15
Author(s): Wen Li Li, Junzhe Huang, Peiwei Zhang, Guojie Cui, Zhanfei Wei, Yu-Zhi Wu, Zhaoming Gao, Zhuang Han, Wang Yong
Software Mentions: 1
Published: over 7 years ago

10.1007/s00253-016-7928-3

Klebsiella phages representing a novel clade of viruses with an unknown DNA modification and biotechnologically interesting enzymes
Cited by: 42
Author(s): Barbara Maciejewska, Bartosz Roszniowski, Akbar Espaillat, Agata Kęsik-Szeloch, Grażyna Majkowska-Skrobek, Andrew M. Kropinski, Yves Briers, Felipe Cava, Rob Lavigne, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: almost 10 years ago

10.1007/s00253-016-7924-7

The temperate Burkholderia phage AP3 of the Peduovirinae shows efficient antimicrobial activity against B. cenocepacia of the IIIA lineage
Cited by: 10
Author(s): Bartosz Roszniowski, Agnieszka Łątka, Barbara Maciejewska, Dieter Vandenheuvel, Tomasz Olszak, Yves Briers, Giles Holt, Miguel A. Valvano, Rob Lavigne, Darren Smith, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: almost 10 years ago

10.1007/s41109-016-0017-9

Quantifying the diaspora of knowledge in the last century
Cited by: 17
Author(s): Manlio De Domenico, Elisa Omodei, Àlex Arenas
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13075-020-02259-z

Comparative transcriptomic analysis identifies distinct molecular signatures and regulatory networks of chondroclasts and osteoclasts
Cited by: 10
Author(s): Nazir M. Khan, Kari B. Clifton, Joseph Lorenzo, Marc F. Hansen, Hicham Drissi
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-020-03689-x

Network-based method for regions with statistically frequent interchromosomal interactions at single-cell resolution
Cited by: 4
Author(s): Chanaka Bulathsinghalage, Lu Liu
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-018-2564-9

MS-Helios: a Circos wrapper to visualize multi-omic datasets
Cited by: 5
Author(s): Harald Marx, Joshua J. Coon
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-15-344

CIG-P: Circular Interaction Graph for Proteomics
Cited by: 0
Author(s): Christopher K. Hobbs, Michelle Leung, Herbert H. Tsang, H. Alexander Ebhardt
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2105-13-58

Methods for visual mining of genomic and proteomic data atlases
Cited by: 8
Author(s): John P. Boyle, Richard Kreisberg, Ryan Bressler, Sarah Killcoyne
Software Mentions: 1
Published: over 14 years ago