10.1186/s12870-019-2031-4

Genome-wide identification of small heat-shock protein (HSP20) gene family in grape and expression profile during berry development
Cited by: 36
Author(s): Xiao-Ru Ji, Yi‐He Yu, Pei-Yi Ni, Guohai Zhang, Da‐Long Guo
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12870-021-03064-9

Genome-wide identification of ZmSnRK2 genes and functional analysis of ZmSnRK2.10 in ABA signaling pathway in maize (Zea mays L)
Cited by: 6
Author(s): Tiandan Long, Bo Xu, Yu‐Feng Hu, Yayun Wang, Changqing Mao, Yongbin Wang, Junjie Zhang, Hanmei Liu, Huanhuan Huang, Yanping Liu, Guowu Yu, Chunzhao Zhao, Yangping Li, Yubi Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2229-13-53

A 1,681-locus consensus genetic map of cultivated cucumber including 67 NB-LRR resistance gene homolog and ten gene loci
Cited by: 55
Author(s): Luming Yang, Dawei Li, Yuhong Li, Xingfang Gu, Sanwen Huang, Jordi García-Más, Yiqun Weng
Software Mentions: 1
Published: over 13 years ago

10.1186/s12870-021-03077-4

Genome-wide identification of PTI1 family in Setaria italica and salinity-responsive functional analysis of SiPTI1–5
Cited by: 7
Author(s): Yongguan Huangfu, Junxiao Pan, Zhen Li, Qingguo Wang, Fatemeh Mastouri, Ying Liu, Stephen C. Yang, Min Liu, Shaojun Dai, Wei Liu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12870-021-03194-0

Recent amplification of microsatellite-associated miniature inverted-repeat transposable elements in the pineapple genome
Cited by: 1
Author(s): Lian‐Yu Lin, Anupma Sharma, Qingyi Yu
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-018-1341-2

Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits
Cited by: 21
Author(s): Gayatri Ramakrishna, Parampreet Kaur, Deepti Nigam, Pavan K. Chaduvula, Sangita Yadav, Akshay Talukdar, Nagendra Singh, Kishor Gaikwad
Software Mentions: 1
Published: about 8 years ago

10.1186/s12870-016-0859-4

Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress
Cited by: 102
Author(s): Komivi Dossa, Xin Wei, Donghua Li, Daniel Foncéka, Yanxin Zhang, Linhai Wang, Jingyin Yu, Boshou Liao, Diaga Diouf, Ndiaga Cissé
Software Mentions: 1
Published: about 10 years ago

10.1186/s12870-020-02683-y

Genome-wide characterization and expression analysis of the heat shock transcription factor family in pumpkin (Cucurbita moschata)
Cited by: 8
Author(s): Changwei Shen, Jingping Yuan
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-020-02618-7

Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling
Cited by: 5
Author(s): Li Wang, Bilal Ahmad, Liang Chen, Xianming Shi, Ruyi Sun, Songlin Zhang, Guozhen Du
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-020-02435-y

Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
Cited by: 20
Author(s): Monika Ślipiko, Kamil Myszczyński, Katarzyna Buczkowska, Alina Bączkiewicz, Monika Szczecińska, Jakub Sawicki
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-018-1252-2

The unique evolutionary pattern of the Hydroxyproline-rich glycoproteins superfamily in Chinese white pear (Pyrus bretschneideri)
Cited by: 5
Author(s): Huijun Jiao, Xing Liu, Shuang Sun, Peng Wang, Xin Qiao, Jiaming Li, Chao Tang, Juyou Wu, Shaoling Zhang, Shutian Tao
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-020-02362-y

Genome-wide identification of the expansin gene family reveals that expansin genes are involved in fibre cell growth in cotton
Cited by: 28
Author(s): Limin Lv, Dongyun Zuo, Xingfen Wang, Hongyan Cheng, Youping Zhang, Qiao-lian Wang, Guoli Song, Zhiying Ma
Software Mentions: 1
Published: over 6 years ago

10.1186/s12870-019-1951-3

Genome-wide identification, expression analysis and functional study of the GRAS gene family in Tartary buckwheat (Fagopyrum tataricum)
Cited by: 58
Author(s): Moyang Liu, Li Huang, Zhaotang Ma, Wenjun Sun, Qi Wu, Zizhong Tang, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-014-0401-5

Genome-wide identification and comparative analysis of the heat shock transcription factor family in Chinese white pear (Pyrus bretschneideri) and five other Rosaceae species
Cited by: 116
Author(s): Xin Qiao, Meng Li, Leiting Li, Hong Yin, Juyou Wu, Shaoling Zhang
Software Mentions: 1
Published: over 11 years ago

10.1186/s12870-018-1519-7

Discovery and annotation of a novel transposable element family in Gossypium
Cited by: 5
Author(s): Hejun Lu, Xinglei Cui, Zhen Liu, Yuling Liu, Xingxing Wang, Zhongli Zhou, Xiaoyan Cai, Zhenmei Zhang, Xuewu Guo, Jinping Hua, Zhiying Ma, Xiyin Wang, Jinfa Zhang, Hong Zhang, Fang Liu, Kunbo Wang
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-018-1265-x

The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)
Cited by: 39
Author(s): Xiaolong Li, Shutian Tao, Shuwei Wei, Meiling Ming, Xiaosan Huang, Shaoling Zhang, Xiaolong Li
Software Mentions: 1
Published: over 8 years ago

10.1186/s12870-020-02620-z

Genome-wide survey, characterization, and expression analysis of bZIP transcription factors in Chenopodium quinoa
Cited by: 12
Author(s): Feng Li, Jianxia Liu, Xuhu Guo, Lili Yin, Hongli Zhang, Rong Wen
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-020-02740-6

Global analysis of the AP2/ERF gene family in rose (Rosa chinensis) genome unveils the role of RcERF099 in Botrytis resistance
Cited by: 20
Author(s): Dandan Li, Xintong Liu, Li-Zhe Shu, Hua Zhang, Shiya Zhang, Yin Song, Zhao Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-019-1891-y

Genome-wide identification and functional analysis of oleosin genes in Brassica napus L.
Cited by: 23
Author(s): Kang Chen, Yuping Yin, Si Liu, Zhenyi Guo, Kai Zhang, Liang Yu, Lina Zhang, Weiguo Zhao, Hongbo Chao, Maoteng Li
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-018-1230-8

Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress
Cited by: 67
Author(s): Wei Gao, Fuchun Xu, Dandan Guo, Jing-Ruo Zhao, Liu Ji, Yawei Guo, Prashant Kumar Singh, Xiaonan Ma, Lu Long, José Ramón Botella, Chun‐Peng Song
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2229-12-139

Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean
Cited by: 133
Author(s): Yang Jae Kang, Kil Hyun Kim, Sangrea Shim, Min Young Yoon, Shufeng Sun, Moon Young Kim, Kyujung Van, Suk-Ha Lee
Software Mentions: 1
Published: about 14 years ago

10.1186/s12870-018-1454-7

Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean
Cited by: 33
Author(s): Chao Yang, Wenjin Shen, Hongfeng Chen, Liutian Chu, Xu Yang, Xiaochen Zhou, Chuanliang Liu, Chunmiao Chen, Jiahui Zeng, Jin Liu, Qianfeng Li, Caiji Gao, Jean‐Benoît Charron, Ming Luo
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-020-02752-2

Genome-wide identification, phylogenetic and expression pattern analysis of GATA family genes in Brassica napus
Cited by: 25
Author(s): Weizhuo Zhu, Yiyi Guo, Yeke Chen, Dezhi Wu, Lixi Jiang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-019-1760-8

Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)
Cited by: 37
Author(s): Xin Gong, Liangyi Zhao, Xiaofei Song, Zekun Lin, Bingjie Gu, Jinxuan Yan, Shaoling Zhang, Shutian Tao, Xiaosan Huang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-014-0253-z

The plasticity of NBS resistance genes in sorghum is driven by multiple evolutionary processes
Cited by: 47
Author(s): Emma Mace, Shuaishuai Tai, David J. Innes, Ian D. Godwin, Wushu S. Hu, Bradley C. Campbell, Edward K. Gilding, Alan Cruickshank, Peter J. Prentis, Jun Wang, David R. Jordan
Software Mentions: 1
Published: about 12 years ago

10.1186/s12870-019-1957-x

Genome-wide identification and expression analysis of the trihelix transcription factor family in tartary buckwheat (Fagopyrum tataricum)
Cited by: 26
Author(s): Zhaotang Ma, Moyang Liu, Wenjun Sun, Li Huang, Qi Wu, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-021-03184-2

Genome-wide analysis of OSCA gene family members in Vigna radiata and their involvement in the osmotic response
Cited by: 17
Author(s): Lili Yin, Meiling Zhang, Ruigang Wu, Xiaoliang Chen, Fei Liu, Xing Bao-long
Software Mentions: 1
Published: about 5 years ago

10.1186/1753-6561-6-S6-P17

Mining cancer genomes in COSMIC
Cited by: 1
Author(s): Mingming Jia, Simon Forbes, David Beare, Nidhi Bindal, Prasad Gunasekaran, Kenric Leung, Chai Yin Kok, Sally Bamford, Charlotte G. Cole, Sari Ward, Jon W. Teague, Michael R. Stratton, Peter J. Campbell, Andrew Futreal
Software Mentions: 1
Published: about 14 years ago

10.1186/1753-6561-6-S6-P37

AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations
Cited by: 3
Author(s): Hue Vuong, Robert M. Stephens, Natalia Volfovsky
Software Mentions: 1
Published: about 14 years ago

10.1186/s12889-016-3630-8

The double burden of disease among mining workers in Papua, Indonesia: at the crossroads between Old and New health paradigms
Cited by: 15
Author(s): Rodrigo Rodríguez-Fernández, Nawi Ng, Dwidjo Susilo, John Prawira, Michael J. Bangs, Rachel M. Amiya
Software Mentions: 1
Published: about 10 years ago

10.1186/1756-0500-5-615

CooVar: Co-occurring variant analyzer
Cited by: 35
Author(s): Ismael A. Vergara, Christian Frech, Nansheng Chen
Software Mentions: 1
Published: almost 14 years ago

10.1186/1752-0509-7-141

Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma
Cited by: 44
Author(s): Meeta Pradhan, Akshay Desai, Mathew Palakal
Software Mentions: 1
Published: almost 13 years ago

10.1093/bioinformatics/btv376

GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications
Cited by: 14
Author(s): Matthew R. Laird, Morgan G. I. Langille, Fiona S. L. Brinkman
Software Mentions: 1
Published: over 11 years ago

10.1186/s13062-015-0085-2

Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm
Cited by: 31
Author(s): Aurélia Caputo, Vicky Merhej, Kalliopi Georgiades, Pierre‐Edouard Fournier, Olivier Croce, Caroline Robert, Didier Raoult
Software Mentions: 1
Published: about 11 years ago

10.1186/s40659-015-0038-3

Integrated analyses of copy number variations and gene differential expression in lung squamous-cell carcinoma
Cited by: 17
Author(s): Yang Zhao, Bing Zhuan, Yan Yan, Simin Jiang, Tao Wang
Software Mentions: 1
Published: about 11 years ago

10.1186/s12938-019-0740-4

Analyzing brain structural differences associated with categories of blood pressure in adults using empirical kernel mapping-based kernel ELM+
Cited by: 3
Author(s): Xinying Yu, Bo Peng, Zeyu Xue, Hamidreza Saligheh Rad, Zhenlin Cai, Jun Shi, Jianbing Zhu, Yakang Dai
Software Mentions: 1
Published: almost 7 years ago

10.1155/2017/7904162

Characterization and Expression Profiling Analysis of Calmodulin Genes in Response to Salt and Osmotic Stresses in Pear (Pyrus bretschneideriRehd.) and in Comparison withArabidopsis
Cited by: 2
Author(s): Jun Tang, Jing Lin, Yong Li, Qiyun Yang, Qunkang Cheng, Zong‐Ming Cheng, Chang YouHong
Software Mentions: 1
Published: almost 10 years ago

10.1155/2021/3904120

A Complete Genome Sequence of the Wood Stem Endophyte Bacillus velezensis BY6 Strain Possessing Plant Growth-Promoting and Antifungal Activities
Cited by: 6
Author(s): Ping Zhang, Jian Diao, Guangqiang Xie, Ling Ma, Lihai Wang
Software Mentions: 1
Published: over 5 years ago

10.1155/2021/9983858

Genome-Wide Identification and Evolutionary Analysis of Argonaute Genes in Hexaploid Bread Wheat
Cited by: 3
Author(s): Yan-Feng Liu, Limin Wang, Zhao Lizi, Wei Wang, Hongxia Zhang
Software Mentions: 1
Published: over 5 years ago

10.1155/2018/9473542

Analysis of the Complete Genome Sequence of<i>Bacillus atrophaeus</i>GQJK17 Reveals Its Biocontrol Characteristics as a Plant Growth-Promoting Rhizobacterium
Cited by: 16
Author(s): Jinjin Ma, Chengqiang Wang, Haide Wang, Kai Liu, Tongrui Zhang, Liangtong Yao, Zhou Zhao, Binghai Du, Yuqiang Ding
Software Mentions: 1
Published: over 8 years ago

10.1155/2019/2965035

Genome-Wide Identification, Evolution, and Transcriptional Profiling of<i>PP2C</i>Gene Family in<i>Brassica rapa</i>
Cited by: 25
Author(s): Nadeem Khan, Koeun Han, Chunmei Hu, Emal Naseri, Muhammad Salman Haider, Aliya Ayaz, Waleed Amjad Khan, Jianjun Wang, Xilin Hou
Software Mentions: 1
Published: over 7 years ago

10.1155/2020/6146104

Complete Genome Sequence and Biodegradation Characteristics of Benzoic Acid-Degrading Bacterium <i>Pseudomonas</i> sp. SCB32
Cited by: 7
Author(s): Wei Xiang, Xiaolan Wei, Hui Tang, Liangbo Li, Rong Huang
Software Mentions: 1
Published: over 6 years ago

10.1155/2013/757490

Targeted Resequencing Reveals<i>ALK</i>Fusions in Non-Small Cell Lung Carcinomas Detected by FISH, Immunohistochemistry, and Real-Time RT-PCR: A Comparison of Four Methods
Cited by: 42
Author(s): Katja Tuononen, Virinder Sarhadi, Aino Wirtanen, Mikko Rönty, Kaisa Salmenkivi, Aija Knuuttila, Satu Maria Remes, Aino Telaranta-Keerie, Stuart Bloor, Pekka Ellonen, Sakari Knuutila
Software Mentions: 1
Published: almost 14 years ago

10.3390/biom9080317

Systematic Analysis of MYB Family Genes in Potato and Their Multiple Roles in Development and Stress Responses
Cited by: 50
Author(s): Xiaoxu Li, Chunfang Guo, Saboor Ahmad, Qi Wang, Jing Yu, Cheng Liu, Yongfeng Guo
Software Mentions: 1
Published: about 7 years ago

10.3390/biom9050188

Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica
Cited by: 20
Author(s): Weilong Kong, Ziyun Gong, Hua Zhong, Yue Zhang, Gangqing Zhao, Mayank Gautam, Xiaoxiao Deng, Chang Liu, Chenhao Zhang, Yangsheng Li
Software Mentions: 1
Published: over 7 years ago

10.3390/biom11081145

Evolutionary and Characteristic Analysis of RING-DUF1117 E3 Ubiquitin Ligase Genes in Gossypium Discerning the Role of GhRDUF4D in Verticillium dahliae Resistance
Cited by: 12
Author(s): Yanpeng Zhao, Jian-Ling Shen, Wenjie Li, Na Wu, Chen Chen, Yuxia Hou
Software Mentions: 1
Published: about 5 years ago

10.1016/j.bpj.2015.06.020

Subconductance Gating and Voltage Sensitivity of Sarcoplasmic Reticulum K+ Channels: A Modeling Approach
Cited by: 8
Author(s): Antoni Matyjaszkiewicz, Elisa Venturi, Fiona O’Brien, Tsunaki Iida, Miyuki Nishi, Hiroshi Takeshima, Krasimira Tsaneva-Atanasova, Rebecca Sitsapesan
Software Mentions: 1
Published: over 11 years ago

10.1186/s13068-018-1195-8

A year of monitoring 20 mesophilic full-scale bioreactors reveals the existence of stable but different core microbiomes in bio-waste and wastewater anaerobic digestion systems
Cited by: 106
Author(s): Magdalena Całusińska, Xavier Goux, Marie Fossépré, Emilie Muller, Paul Wilmes, Philippe Delfosse
Software Mentions: 1
Published: about 8 years ago

10.1186/s13068-017-0840-y

Diversity of microbial carbohydrate-active enzymes in Danish anaerobic digesters fed with wastewater treatment sludge
Cited by: 23
Author(s): Casper Wilkens, Peter Kamp Busk, Bo Pilgaard, Wen Jing Zhang, Kåre Lehmann Nielsen, Per Halkjær Nielsen, Lene Lange
Software Mentions: 1
Published: over 9 years ago

10.1038/s41408-021-00504-5

Fusion gene map of acute leukemia revealed by transcriptome sequencing of a consecutive cohort of 1000 cases in a single center
Cited by: 16
Author(s): Chen Xue, Fang Wang, Yang Zhang, Xiaoli Ma, Panxiang Cao, Lili Yuan, Lan Wang, Jiaqi Chen, Xiaosu Zhou, Qing Wu, Ming Liu, David Jin, Hongxing Liu
Software Mentions: 1
Published: over 5 years ago

10.1038/bcj.2013.70

Lack of common TCRA and TCRB clonotypes in CD8+/TCRαβ+ T-cell large granular lymphocyte leukemia: a review on the role of antigenic selection in the immunopathogenesis of CD8+ T-LGL
Cited by: 16
Author(s): Yorick Sandberg, Martine J. Kallemeijn, Willem A. Dik, Dennis Tielemans, I. L. M. Wolvers-Tettero, Ellen J. van Gastel-Mol, Tomasz Szczepański, Y Pol, Nikos Darzentas, Jacques J. M. van Dongen, Anton W. Langerak
Software Mentions: 1
Published: over 12 years ago

10.1080/02688697.2016.1208809

Connectome analysis for pre-operative brain mapping in neurosurgery
Cited by: 42
Author(s): Michael G Hart, Stephen J. Price, John Suckling
Software Mentions: 1
Published: about 10 years ago

10.1186/s12935-020-01359-9

Identification of long noncoding RNA RP11-89K21.1 and RP11-357H14.17 as prognostic signature of endometrial carcinoma via integrated bioinformatics analysis
Cited by: 12
Author(s): Lingling Gao, Xin Nie, Wenchao Zhang, Rui Gou, Yuexin Hu, Yue Qi, Xiao Li, Qing Liu, Juanjuan Liu, Bei Lin
Software Mentions: 1
Published: over 6 years ago

10.1186/s12935-021-01863-6

Identification of four key prognostic genes and three potential drugs in human papillomavirus negative head and neck squamous cell carcinoma
Cited by: 6
Author(s): Guocai Tian, Yuli Fu, Dahe Zhang, Li Jiang, Zhiyuan Zhang, Xi Yang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41374-021-00597-3

Exploring photoacoustic spectroscopy-based machine learning together with metabolomics to assess breast tumor progression in a xenograft model ex vivo
Cited by: 12
Author(s): Jackson Rodrigues, Ashwini Amin, Chandavalli Ramappa Raghushaker, Subhash Chandra, Manjunath B. Joshi, Keerthana Prasad, Sharada Rai, Subramanya G. Nayak, Sujoy Ray, Krishna Kishore Mahato
Software Mentions: 1
Published: over 5 years ago

10.1186/s12936-016-1641-7

Whole genome sequencing of Plasmodium falciparum from dried blood spots using selective whole genome amplification
Cited by: 122
Author(s): Samuel O. Oyola, Cristina V. Ariani, William L. Hamilton, Mihir Kekre, Lucas Amenga-Etego, Anita Ghansah, Gavin G. Rutledge, Seth Redmond, Magnus Manske, Dushyanth Jyothi, Chris Jacob, Thomas D. Otto, Kirk A. Rockett, Chris Newbold, Matthew Berriman, Dominic P. Kwiatkowski
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12936-018-2232-6

Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots
Cited by: 12
Author(s): Sidsel Nag, Poul Erik Kofoed, Johan Ursing, Camilla K. Lemvigh, Rosa Lundbye Allesøe, Amabélia Rodrigues, Christina Aaby Svendsen, Jacob Dyring Jensen, Michael Alifrangis, Ole Lund, Frank Møller Aarestrup
Software Mentions: 1
Published: over 8 years ago

10.3390/md17070388

Biosynthetic Potential of a Novel Antarctic Actinobacterium Marisediminicola antarctica ZS314T Revealed by Genomic Data Mining and Pigment Characterization
Cited by: 15
Author(s): Li Liao, Shiyuan Su, Bin Zhao, Cheng‐Qi Fan, Jin Zhang, Huirong Li, Bo Chen
Software Mentions: 1
Published: over 7 years ago

10.3390/md19080458

Isolation, Phylogenetic and Gephyromycin Metabolites Characterization of New Exopolysaccharides-Bearing Antarctic Actinobacterium from Feces of Emperor Penguin
Cited by: 5
Author(s): Huimin Gao, Pengfei Xie, Xiaoling Zhang, Yingjie Qiao
Software Mentions: 1
Published: about 5 years ago

10.1186/s12934-020-01359-4

Comprehensive dissection of dispensable genomic regions in Streptomyces based on comparative analysis approach
Cited by: 10
Author(s): Qing-Ting Bu, Yueping Liu, Huang Xie, Jue Wang, Zi-Yue Li, Xin-Ai Chen, Xu‐Ming Mao, Yongquan Li
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-021-01652-w

Combining functional metagenomics and glycoanalytics to identify enzymes that facilitate structural characterization of sulfated N-glycans
Cited by: 8
Author(s): Léa Chuzel, Samantha L. Fossa, Madison L. Boisvert, Samanta Cajic, René Hennig, Mehul B. Ganatra, Udo Reichl, Erdmann Rapp, Christopher H. Taron
Software Mentions: 1
Published: about 5 years ago

10.1186/s12934-020-01487-x

Engineering Lactococcus lactis as a multi-stress tolerant biosynthetic chassis by deleting the prophage-related fragment
Cited by: 8
Author(s): Wanjin Qiao, Yu Qiao, Fulu Liu, Yating Zhang, Ran Li, Zhenzhou Wu, Haijin Xu, Per E. J. Saris, Mingqiang Qiao
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12934-019-1055-7

Rational construction of genome-reduced and high-efficient industrial Streptomyces chassis based on multiple comparative genomic approaches
Cited by: 45
Author(s): Qing-Ting Bu, Ping Yu, Jue Wang, Zi-Yue Li, Xin-Ai Chen, Xu‐Ming Mao, Yongquan Li
Software Mentions: 1
Published: over 7 years ago

10.1264/jsme2.ME18096

Analyses of the Complete Genome Sequence of the Strain &lt;i&gt;Bacillus pumilus&lt;/i&gt; ZB201701 Isolated from Rhizosphere Soil of Maize under Drought and Salt Stress
Cited by: 5
Author(s): Zhongbao Zhang, Yin Li, Xianglong Li, Chun Zhang, Huawen Zou, Cai Liu, Zhongyi Wu
Software Mentions: 1
Published: almost 8 years ago

10.1099/mgen.0.000396

socru: typing of genome-level order and orientation around ribosomal operons in bacteria
Cited by: 15
Author(s): Andrew J. Page, Emma V. Ainsworth, Gemma C. Langridge
Software Mentions: 1
Published: over 6 years ago

10.1099/mgen.0.000077

Functional analysis of the first complete genome sequence of a multidrug resistant sequence type 2 Staphylococcus epidermidis
Cited by: 13
Author(s): Jean Lee, Ian R. Monk, Sacha J. Pidot, Siddarth Singh, Kyra Chua, Torsten Seemann, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 1
Published: about 10 years ago

10.1002/mbo3.996

Comparative analysis and gut bacterial community assemblages of grass carp and crucian carp in new lineages from the Dongting Lake area
Cited by: 10
Author(s): Sheng Zhang, Lei Gong, Tabreiz Ahmad Khan, Lifei Pan, Liang Yan, Dongjie Li, Lei Cao, Yanping Li, Xuezhi Ding, Ganfeng Yi, Yunjun Sun, Shengbiao Hu, Liqiu Xia
Software Mentions: 1
Published: over 6 years ago

10.1128/MRA.00927-19

Improved Draft Genome Sequence of <i>Microbacterium</i> sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
Cited by: 6
Author(s): Mohammad Radhi Sahib, Piao Yang, Norbert Bokros, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides, Ye Xia, Seth DeBolt
Software Mentions: 1
Published: almost 7 years ago

10.1128/MRA.00099-19

Improved Draft Genome Sequence of Bacillus sp. Strain YF23, Which Has Plant Growth-Promoting Activity
Cited by: 0
Author(s): Ye Xia, Seth DeBolt, Qin Ma, Adam McDermaid, Cankun Wang, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides
Software Mentions: 1
Published: over 7 years ago

10.1128/MRA.00046-19

Complete Genome and Plasmid Sequences of Escherichia coli Type Strain ATCC 11775
Cited by: 4
Author(s): Taylor D Wadley, Piroon Jenjaroenpun, Thidathip Wongsurawat, David W. Ussery, Intawat Nookaew
Software Mentions: 1
Published: over 7 years ago

10.1128/MRA.01473-19

Complete Genome Sequence of Lactobacillus nenjiangensis SH-Y15, Isolated from Sauerkraut
Cited by: 0
Author(s): Jiale He, Yan Liu, Fengzi Li, Hao Wu, Yang Hong-yan
Software Mentions: 1
Published: over 6 years ago

10.1128/MRA.00232-20

Complete Genome Sequence of a Toxic and Bioactive Exopolysaccharide-Bearing Bacterium, Sulfitobacter sp. Strain AM1-D1
Cited by: 0
Author(s): Xi Yang, Zhiwei Jiang, Zhuang Chen, Jun Dai, Lei Wang, Xiaoling Zhang, Yingjie Qiao
Software Mentions: 1
Published: over 6 years ago

10.1128/MRA.00275-19

Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity
Cited by: 5
Author(s): Ye Xia, Seth DeBolt, Qin Ma, Adam McDermaid, Cankun Wang, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-018-0536-y

Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate
Cited by: 66
Author(s): Marius Bredon, Jessica Dittmer, Cyril Noël, Bouziane Moumen, Didier Bouchon
Software Mentions: 1
Published: about 8 years ago

10.1186/s40168-017-0251-0

Revealing large metagenomic regions through long DNA fragment hybridization capture
Cited by: 5
Author(s): Cyrielle Gasc, Pierre Peyret
Software Mentions: 1
Published: over 9 years ago

10.3390/microorganisms8010088

Transcriptome Analysis of Ice Plant Growth-Promoting Endophytic Bacterium Halomonas sp. Strain MC1 to Identify the Genes Involved in Salt Tolerance
Cited by: 11
Author(s): Jian Zhang, Pengcheng Wang, Hongmei Tian, Zhen Tao, Tingting Guo
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms8020268

Effects of Composting Different Types of Organic Fertilizer on the Microbial Community Structure and Antibiotic Resistance Genes
Cited by: 28
Author(s): Zeming Zhou, Huaiying Yao
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms6030063

Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System
Cited by: 11
Author(s): Anders Schouw, Francesca Vulcano, Irene Roalkvam, William G. Hocking, Eoghan P. Reeves, Runar Stokke, Gunhild Bødtker, Ida Helene Steen
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms9071395

Corynebacterium glutamicum Regulation beyond Transcription: Organizing Principles and Reconstruction of an Extended Regulatory Network Incorporating Regulations Mediated by Small RNA and Protein–Protein Interactions
Cited by: 5
Author(s): Juan M. Escorcia-Rodríguez, Andreas Tauch, Julio A. Freyre-González
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9030648

Genome Sequencing of five Lacticaseibacillus Strains and Analysis of Type I and II Toxin-Antitoxin System Distribution
Cited by: 5
Author(s): Alessia Levante, Camilla Lazzi, Giannis Vatsellas, Dimitris Chatzopoulos, Vasilis S. Dionellis, Periklis Makrythanasis, Erasmo Neviani, Claudia Folli
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms8010002

Complete Genome Sequence of Acidithiobacillus ferrooxidans YNTRS-40, a Strain of the Ferrous Iron- and Sulfur-Oxidizing Acidophile
Cited by: 18
Author(s): Yu Zhang, Shuang Zhang, Dan Zhao, Yuwen Ni, Weidong Wang, Lei Yan
Software Mentions: 1
Published: almost 7 years ago

10.3390/microorganisms7120683

Thriving in Wetlands: Ecophysiology of the Spiral-Shaped Methanotroph Methylospira mobilis as Revealed by the Complete Genome Sequence
Cited by: 9
Author(s): Igor Y. Oshkin, Kirill K. Miroshnikov, Olga V. Danilova, Աննա Հակոբյան, Werner Liesack, Svetlana N. Dedysh
Software Mentions: 1
Published: almost 7 years ago

10.3390/microorganisms8122051

Integrative and Conjugative Element ICETh1 Functions as a Pangenomic DNA Capture Module in Thermus thermophilus
Cited by: 1
Author(s): Alba Blesa, Ignacio Baquedano, Sandra González-de la Fuente, Mario Mencı́a, José Berenguer
Software Mentions: 1
Published: almost 6 years ago

10.3390/microorganisms9091925

Interrelationship between the Microbial Communities of the Root Canals and Periodontal Pockets in Combined Endodontic-Periodontal Diseases
Cited by: 5
Author(s): Érica Mendes Lopes, Maicon Ricardo Zieberg Passini, Luciano Takeshi Kishi, Tsute Chen, Bruce J. Paster, Brenda P. F. A. Gomes
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms8122024

The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Cited by: 20
Author(s): Irena Maus, Tom Jonas Tubbesing, Daniel Wibberg, Robert Heyer, Julia Hassa, Geizecler Tomazetto, Liren Huang, Boyke Bunk, Cathrin Spröer, Dirk Benndorf, Vladimir V. Zverlov, Alfred Pühler, Michael Klocke, Alexander Sczyrba, Andreas Schlüter
Software Mentions: 1
Published: almost 6 years ago

10.1080/23802359.2021.1961627

Comparative mitochondrial genome analysis of the Mongolian redfin, Chanodichthys mongolicus (Xenocyprididae) from China reveals heteroplasmy
Cited by: 1
Author(s): Kai Liu, Xiaoyu Feng, Hengjia Ma, Nan Xie
Software Mentions: 1
Published: about 5 years ago

10.1186/s12943-018-0876-z

Exosomal double-stranded DNA as a biomarker for the diagnosis and preoperative assessment of pheochromocytoma and paraganglioma
Cited by: 54
Author(s): Liang Wang, Ying Liu, Xin Guan, Jingyuan Zhao, Liming Shen, Jing Liu
Software Mentions: 1
Published: about 8 years ago

10.3390/molecules26041114

Anti-MRSA Constituents from Ruta chalepensis (Rutaceae) Grown in Iraq, and In Silico Studies on Two of Most Active Compounds, Chalepensin and 6-Hydroxy-rutin 3′,7-Dimethyl ether
Cited by: 15
Author(s): Shaymaa Al‐Majmaie, Lutfun Nahar, M. Mukhlesur Rahman, Sushmita Nath, Priyanka Saha, Anupam Das Talukdar, George P. Sharples, Satyajit D. Sarker
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules26102862

Screening and Comparison of Lignin Degradation Microbial Consortia from Wooden Antiques
Cited by: 17
Author(s): Wen Zhang, Xueyan Ren, Qiong Lei, Lei Wang
Software Mentions: 1
Published: over 5 years ago

10.3390/molecules24091837

Calcium-Dependent Protein Kinase Genes in Glycyrrhiza Uralensis Appear to be Involved in Promoting the Biosynthesis of Glycyrrhizic Acid and Flavonoids under Salt Stress
Cited by: 15
Author(s): Xuechen Tong, Aiping Cao, Fei Wang, Xifeng Chen, Shuangquan Xie, Haitao Shen, Xiang Jin, Hongbin Li
Software Mentions: 1
Published: over 7 years ago

10.3390/molecules25245925

Cyano Enone-Bearing Triterpenoid Soloxolone Methyl Inhibits Epithelial-Mesenchymal Transition of Human Lung Adenocarcinoma Cells In Vitro and Metastasis of Murine Melanoma In Vivo
Cited by: 6
Author(s): Andrey Markov, Kirill V. Odarenko, Aleksandra V. Sen’kova, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules21111607

The Draft Genome Sequence of Actinokineospora bangkokensis 44EHWT Reveals the Biosynthetic Pathway of the Antifungal Thailandin Compounds with Unusual Butylmalonyl-CoA Extender Units
Cited by: 6
Author(s): Anja Greule, Bungonsiri Intra, Stephan Flemming, Marcel G.E. Rommel, Watanalai Panbangred, Andreas Bechthold
Software Mentions: 1
Published: almost 10 years ago

10.1007/s00438-017-1413-2

Genome-wide investigation and expression profiling of APX gene family in Gossypium hirsutum provide new insights in redox homeostasis maintenance during different fiber development stages
Cited by: 41
Author(s): Chengcheng Tao, Xiang Jin, Liping Zhu, Quanliang Xie, Xuchu Wang, Hongbin Li
Software Mentions: 1
Published: over 8 years ago

10.1007/s00438-012-0718-4

Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution
Cited by: 58
Author(s): Jeong‐Hwan Mun, Hee‐Ju Yu, Ja Young Shin, Min Seok Oh, Hye Jeon Hwang, Hee Chung
Software Mentions: 1
Published: about 14 years ago

10.1002/mnfr.201500435

Systematic analysis of the polyphenol metabolome using the Phenol‐Explorer database
Cited by: 66
Author(s): Joseph A. Rothwell, Mireia Urpí-Sardà, María Boto‐Ordóñez, Rafaël Llorach, Andreu Farran‐Codina, Dinesh Kumar Barupal, Vanessa Neveu, Claudine Manach, Cristina Andrés‐Lacueva, Augustin Scalbert
Software Mentions: 1
Published: almost 11 years ago

10.1002/1878-0261.12785

Epigenetic–smoking interaction reveals histologically heterogeneous effects of <i>TRIM27</i> DNA methylation on overall survival among early‐stage NSCLC patients
Cited by: 12
Author(s): Xinyu Ji, Lijuan Lin, Sipeng Shen, Xuesi Dong, Chao Chen, Yang Li, Ying Zhu, Hui Huang, Jia-Jin Jason Chen, Xin Chen, Liangmin Wei, Jieyu He, Weiwei Duan, Su Li, Yue Jiang, Juanjuan Fan, Jinxing Guan, Dongfang You, Andrea T. Shafer, Maria Moksnes Bjaanæs, Anna Karlsson, Maria Planck, Johan Staaf, Åslaug Helland, Manel Esteller, Yongyue Wei, Ruyang Zhang, Feng Chen, David C. Christiani
Software Mentions: 1
Published: about 6 years ago

10.1177/1744806919860323

Correlation of miRNA expression with intensity of neuropathic pain in man
Cited by: 13
Author(s): Diana Tavares‐Ferreira, Nathan Lawless, Emma V. Bird, Simon Atkins, David A. Collier, Emanuele Sher, Karim Malki, D Lambert, Fiona M. Boissonade
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41380-018-0313-0

Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci
Cited by: 71
Author(s): A. Mesut Erzurumluoglu, Mengzhen Liu, Victoria E. Jackson, Daniel R. Barnes, Gargi Datta, Carl Melbourne, Robin Young, Chiara Batini, Praveen Surendran, Tao Jiang, Sheikh Daud Adnan, Saima Afaq, Arpana Agrawal, Elisabeth Altmaier, Antonis C. Antoniou, Folkert W. Asselbergs, Clemens Baumbach, Laura J. Bierut, Sarah Bertelsen, Michael Boehnke, Michiel L. Bots, David M. Brazel, John C. Chambers, Jenny Chang–Claude, Chu Chen, Janie Corley, Yi‐Ling Chou, Sean P. David, Rudolf A. de Boer, Christiaan A. de Leeuw, Joe Dennis, Anna F. Dominiczak, Alison M. Dunning, Douglas F. Easton, Charles B. Eaton, Paul Elliott, Εvangelos Εvangelou, Jessica D. Faul, Tatiana Foroud, Alison Goate, Jian Gong, Hans J. Grabe, Jeff Haessler, Christopher A. Haiman, Göran Hallmans, Anke R. Hammerschlag, Sarah E. Harris, Andrew T. Hattersley, Andrew C. Heath, Chris Hsu, William G. Iacono, Stavroula Kanoni, Manav Kapoor, Jaakko Kaprio, Sharon L.R. Kardia, Fredrik Karpe, Jukka Kontto, Jaspal S. Kooner, Charles Kooperberg, Kari Kuulasmaa, Markku Laakso, Dongbing Lai, Claudia Langenberg, Nhung Le, Guillaume Lettre, Anu Loukola, Jian’an Luan, Pamela A. F. Madden, Massimo Mangino, Riccardo E. Marioni, Eirini Marouli, Jonathan Marten, Nicholas G. Martin, Matt McGue, Kyriaki Michailidou, Evelin Mihailov, Alireza Moayyeri, Marie Moitry, Martina Müller‐Nurasyid, Aliya Naheed, Matthias Nauck, Matthew J. Neville, Sune F. Nielsen, Kari E. North, Markus Perola, Paul D.P. Pharoah, Giorgio Pistis, Tinca J. C. Polderman, Daniëlle Posthuma, Neil Poulter, Beenish Qaiser, Awais Rasheed, Alex P. Reiner, Frida Renström, John P. Rice, Rebecca Rohde, Olov Rolandsson, Nilesh J. Samani, Maria Samuel, David Schlessinger, Steven Scholte, Robert A. Scott, Peter Sever, Yaming Shao, Nick Shrine, Jennifer A. Smith, John M. Starr, Kathleen Stirrups, Danielle Stram, Heather M. Stringham, Ioanna Tachmazidou, Jean‐Claude Tardif, Deborah J. Thompson, Hilary A. Tindle, Vinicius Tragante, Stella Trompet, Valérie Turcot, Jessica Tyrrell, Ilonca Vaartjes, Andries R. van der Leij, Peter van der Meer, Tibor V. Varga, Niek Verweij, Henry Völzke, Nicholas J. Wareham, Helen R. Warren, David R. Weir, Stefan Weiß, Leah Wetherill, Hanieh Yaghootkar, Ersin Yavas, Yu Jiang, Fang Chen, Xiaowei Zhan, Weihua Zhang, Wei Zhao, Wei Zhao, Kaixin Zhou, Philippe Amouyel, Stefan Blankenberg, Mark J. Caulfield, Rajiv Chowdhury, Francesco Cucca, Ian J. Deary, Panos Deloukas, Emanuele Di Angelantonio, Marco Ferrario, Jean Ferrières, Paul W. Franks, Tim Frayling, Philippe Frossard, Ian P. Hall, Caroline Hayward, Jan‐Håkan Jansson, J. Wouter Jukema, Frank Kee, Satu Männistö, Andres Metspalu, Patricia B. Munroe, Børge G. Nordestgaard, Colin N.A. Palmer, Veikko Salomaa, Naveed Sattar, Timothy D. Spector, David P. Strachan, Pim van der Harst, Eleftheria Zeggini, Danish Saleheen, Adam S. Butterworth, Louise V. Wain, Gonçalo R. Abecasis, John Danesh, Martin D. Tobin, Scott Vrieze, Dajiang Liu, Joanna M. M. Howson
Software Mentions: 1
Published: over 7 years ago

10.1038/msb.2013.41

Generalized bacterial genome editing using mobile group II introns and Cre‐<i>lox</i>
Cited by: 70
Author(s): Peter J. Enyeart, Steven M. Chirieleison, Mai N. Dao, Jiřı́ Perůtka, Erik M. Quandt, Jun Yao, Jacob T Whitt, Adrian T. Keatinge‐Clay, Alan M. Lambowitz, Andrew D. Ellington
Software Mentions: 1
Published: almost 14 years ago

10.1007/s11557-018-1415-4

ITS2 metabarcoding analysis complements lichen mycobiome diversity data
Cited by: 33
Author(s): Elisa Banchi, D Stanković, Fernando Fernández-Mendoza, Fabrizia Gionechetti, Alberto Pallavicini, Lucía Muggia
Software Mentions: 1
Published: over 8 years ago