Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Circos

https://packages.ecosyste.ms/registries/pypi.org/packages/Circos

Circos plots in Python!
10 versions
Latest release: about 1 year ago
55 downloads last month

Papers Mentioning Circos 2,252

10.3390/microorganisms9030648
Genome Sequencing of five Lacticaseibacillus Strains and Analysis of Type I and II Toxin-Antitoxin System Distribution
Cited by: 5
Author(s): Alessia Levante, Camilla Lazzi, Giannis Vatsellas, Dimitris Chatzopoulos, Vasilis S. Dionellis, Periklis Makrythanasis, Erasmo Neviani, Claudia Folli
Software Mentions: 1
Published: over 3 years ago
10.3390/microorganisms8010002
Complete Genome Sequence of Acidithiobacillus ferrooxidans YNTRS-40, a Strain of the Ferrous Iron- and Sulfur-Oxidizing Acidophile
Cited by: 18
Author(s): Yu Zhang, Shuang Zhang, Dan Zhao, Yuwen Ni, Weidong Wang, Lei Yan
Software Mentions: 1
Published: almost 5 years ago
10.3390/microorganisms7120683
Thriving in Wetlands: Ecophysiology of the Spiral-Shaped Methanotroph Methylospira mobilis as Revealed by the Complete Genome Sequence
Cited by: 9
Author(s): Igor Y. Oshkin, Kirill K. Miroshnikov, Olga V. Danilova, Աննա Հակոբյան, Werner Liesack, Svetlana N. Dedysh
Software Mentions: 1
Published: almost 5 years ago
10.3390/microorganisms8122051
Integrative and Conjugative Element ICETh1 Functions as a Pangenomic DNA Capture Module in Thermus thermophilus
Cited by: 1
Author(s): Alba Blesa, Ignacio Baquedano, Sandra González-de la Fuente, Mario Mencı́a, José Berenguer
Software Mentions: 1
Published: almost 4 years ago
10.3390/microorganisms9091925
Interrelationship between the Microbial Communities of the Root Canals and Periodontal Pockets in Combined Endodontic-Periodontal Diseases
Cited by: 5
Author(s): Érica Mendes Lopes, Maicon Ricardo Zieberg Passini, Luciano Takeshi Kishi, Tsute Chen, Bruce J. Paster, Brenda P. F. A. Gomes
Software Mentions: 1
Published: about 3 years ago
10.3390/microorganisms8122024
The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Cited by: 20
Author(s): Irena Maus, Tom Jonas Tubbesing, Daniel Wibberg, Robert Heyer, Julia Hassa, Geizecler Tomazetto, Liren Huang, Boyke Bunk, Cathrin Spröer, Dirk Benndorf, Vladimir V. Zverlov, Alfred Pühler, Michael Klocke, Alexander Sczyrba, Andreas Schlüter
Software Mentions: 1
Published: almost 4 years ago
10.1080/23802359.2021.1961627
Comparative mitochondrial genome analysis of the Mongolian redfin, Chanodichthys mongolicus (Xenocyprididae) from China reveals heteroplasmy
Cited by: 1
Author(s): Kai Liu, Xiaoyu Feng, Hengjia Ma, Nan Xie
Software Mentions: 1
Published: over 3 years ago
10.1186/s12943-018-0876-z
Exosomal double-stranded DNA as a biomarker for the diagnosis and preoperative assessment of pheochromocytoma and paraganglioma
Cited by: 54
Author(s): Liang Wang, Ying Liu, Xin Guan, Jingyuan Zhao, Liming Shen, Jing Liu
Software Mentions: 1
Published: over 6 years ago
10.3390/molecules26041114
Anti-MRSA Constituents from Ruta chalepensis (Rutaceae) Grown in Iraq, and In Silico Studies on Two of Most Active Compounds, Chalepensin and 6-Hydroxy-rutin 3′,7-Dimethyl ether
Cited by: 15
Author(s): Shaymaa Al‐Majmaie, Lutfun Nahar, M. Mukhlesur Rahman, Sushmita Nath, Priyanka Saha, Anupam Das Talukdar, George P. Sharples, Satyajit D. Sarker
Software Mentions: 1
Published: almost 4 years ago
10.3390/molecules26102862
Screening and Comparison of Lignin Degradation Microbial Consortia from Wooden Antiques
Cited by: 17
Author(s): Wen Zhang, Xueyan Ren, Qiong Lei, Lei Wang
Software Mentions: 1
Published: over 3 years ago
10.3390/molecules24091837
Calcium-Dependent Protein Kinase Genes in Glycyrrhiza Uralensis Appear to be Involved in Promoting the Biosynthesis of Glycyrrhizic Acid and Flavonoids under Salt Stress
Cited by: 15
Author(s): Xuechen Tong, Aiping Cao, Fei Wang, Xifeng Chen, Shuangquan Xie, Haitao Shen, Xiang Jin, Hongbin Li
Software Mentions: 1
Published: over 5 years ago
10.3390/molecules25245925
Cyano Enone-Bearing Triterpenoid Soloxolone Methyl Inhibits Epithelial-Mesenchymal Transition of Human Lung Adenocarcinoma Cells In Vitro and Metastasis of Murine Melanoma In Vivo
Cited by: 6
Author(s): Andrey Markov, Kirill V. Odarenko, Aleksandra V. Sen’kova, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova
Software Mentions: 1
Published: almost 4 years ago
10.3390/molecules21111607
The Draft Genome Sequence of Actinokineospora bangkokensis 44EHWT Reveals the Biosynthetic Pathway of the Antifungal Thailandin Compounds with Unusual Butylmalonyl-CoA Extender Units
Cited by: 6
Author(s): Anja Greule, Bungonsiri Intra, Stephan Flemming, Marcel G.E. Rommel, Watanalai Panbangred, Andreas Bechthold
Software Mentions: 1
Published: about 8 years ago
10.1007/s00438-017-1413-2
Genome-wide investigation and expression profiling of APX gene family in Gossypium hirsutum provide new insights in redox homeostasis maintenance during different fiber development stages
Cited by: 41
Author(s): Chengcheng Tao, Xiang Jin, Liping Zhu, Quanliang Xie, Xuchu Wang, Hongbin Li
Software Mentions: 1
Published: almost 7 years ago
10.1007/s00438-012-0718-4
Auxin response factor gene family in Brassica rapa: genomic organization, divergence, expression, and evolution
Cited by: 58
Author(s): Jeong‐Hwan Mun, Hee‐Ju Yu, Ja Young Shin, Min Seok Oh, Hye Jeon Hwang, Hee Chung
Software Mentions: 1
Published: over 12 years ago
10.1002/mnfr.201500435
Systematic analysis of the polyphenol metabolome using the Phenol‐Explorer database
Cited by: 66
Author(s): Joseph A. Rothwell, Mireia Urpí-Sardà, María Boto‐Ordóñez, Rafaël Llorach, Andreu Farran‐Codina, Dinesh Kumar Barupal, Vanessa Neveu, Claudine Manach, Cristina Andrés‐Lacueva, Augustin Scalbert
Software Mentions: 1
Published: about 9 years ago
10.1002/1878-0261.12785
Epigenetic–smoking interaction reveals histologically heterogeneous effects of <i>TRIM27</i> DNA methylation on overall survival among early‐stage NSCLC patients
Cited by: 12
Author(s): Xinyu Ji, Lijuan Lin, Sipeng Shen, Xuesi Dong, Chao Chen, Yang Li, Ying Zhu, Hui Huang, Jia-Jin Jason Chen, Xin Chen, Liangmin Wei, Jieyu He, Weiwei Duan, Su Li, Yue Jiang, Juanjuan Fan, Jinxing Guan, Dongfang You, Andrea T. Shafer, Maria Moksnes Bjaanæs, Anna Karlsson, Maria Planck, Johan Staaf, Åslaug Helland, Manel Esteller, Yongyue Wei, Ruyang Zhang, Feng Chen, David C. Christiani
Software Mentions: 1
Published: about 4 years ago
10.1177/1744806919860323
Correlation of miRNA expression with intensity of neuropathic pain in man
Cited by: 13
Author(s): Diana Tavares‐Ferreira, Nathan Lawless, Emma V. Bird, Simon Atkins, David A. Collier, Emanuele Sher, Karim Malki, D Lambert, Fiona M. Boissonade
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41380-018-0313-0
Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci
Cited by: 71
Author(s): A. Mesut Erzurumluoglu, Mengzhen Liu, Victoria E. Jackson, Daniel R. Barnes, Gargi Datta, Carl Melbourne, Robin Young, Chiara Batini, Praveen Surendran, Tao Jiang, Sheikh Daud Adnan, Saima Afaq, Arpana Agrawal, Elisabeth Altmaier, Antonis C. Antoniou, Folkert W. Asselbergs, Clemens Baumbach, Laura J. Bierut, Sarah Bertelsen, Michael Boehnke, Michiel L. Bots, David M. Brazel, John C. Chambers, Jenny Chang–Claude, Chu Chen, Janie Corley, Yi‐Ling Chou, Sean P. David, Rudolf A. de Boer, Christiaan A. de Leeuw, Joe Dennis, Anna F. Dominiczak, Alison M. Dunning, Douglas F. Easton, Charles B. Eaton, Paul Elliott, Εvangelos Εvangelou, Jessica D. Faul, Tatiana Foroud, Alison Goate, Jian Gong, Hans J. Grabe, Jeff Haessler, Christopher A. Haiman, Göran Hallmans, Anke R. Hammerschlag, Sarah E. Harris, Andrew T. Hattersley, Andrew C. Heath, Chris Hsu, William G. Iacono, Stavroula Kanoni, Manav Kapoor, Jaakko Kaprio, Sharon L.R. Kardia, Fredrik Karpe, Jukka Kontto, Jaspal S. Kooner, Charles Kooperberg, Kari Kuulasmaa, Markku Laakso, Dongbing Lai, Claudia Langenberg, Nhung Le, Guillaume Lettre, Anu Loukola, Jian’an Luan, Pamela A. F. Madden, Massimo Mangino, Riccardo E. Marioni, Eirini Marouli, Jonathan Marten, Nicholas G. Martin, Matt McGue, Kyriaki Michailidou, Evelin Mihailov, Alireza Moayyeri, Marie Moitry, Martina Müller‐Nurasyid, Aliya Naheed, Matthias Nauck, Matthew J. Neville, Sune F. Nielsen, Kari E. North, Markus Perola, Paul D.P. Pharoah, Giorgio Pistis, Tinca J. C. Polderman, Daniëlle Posthuma, Neil Poulter, Beenish Qaiser, Awais Rasheed, Alex P. Reiner, Frida Renström, John P. Rice, Rebecca Rohde, Olov Rolandsson, Nilesh J. Samani, Maria Samuel, David Schlessinger, Steven Scholte, Robert A. Scott, Peter Sever, Yaming Shao, Nick Shrine, Jennifer A. Smith, John M. Starr, Kathleen Stirrups, Danielle Stram, Heather M. Stringham, Ioanna Tachmazidou, Jean‐Claude Tardif, Deborah J. Thompson, Hilary A. Tindle, Vinicius Tragante, Stella Trompet, Valérie Turcot, Jessica Tyrrell, Ilonca Vaartjes, Andries R. van der Leij, Peter van der Meer, Tibor V. Varga, Niek Verweij, Henry Völzke, Nicholas J. Wareham, Helen R. Warren, David R. Weir, Stefan Weiß, Leah Wetherill, Hanieh Yaghootkar, Ersin Yavas, Yu Jiang, Fang Chen, Xiaowei Zhan, Weihua Zhang, Wei Zhao, Wei Zhao, Kaixin Zhou, Philippe Amouyel, Stefan Blankenberg, Mark J. Caulfield, Rajiv Chowdhury, Francesco Cucca, Ian J. Deary, Panos Deloukas, Emanuele Di Angelantonio, Marco Ferrario, Jean Ferrières, Paul W. Franks, Tim Frayling, Philippe Frossard, Ian P. Hall, Caroline Hayward, Jan‐Håkan Jansson, J. Wouter Jukema, Frank Kee, Satu Männistö, Andres Metspalu, Patricia B. Munroe, Børge G. Nordestgaard, Colin N.A. Palmer, Veikko Salomaa, Naveed Sattar, Timothy D. Spector, David P. Strachan, Pim van der Harst, Eleftheria Zeggini, Danish Saleheen, Adam S. Butterworth, Louise V. Wain, Gonçalo R. Abecasis, John Danesh, Martin D. Tobin, Scott Vrieze, Dajiang Liu, Joanna M. M. Howson
Software Mentions: 1
Published: almost 6 years ago
10.1038/msb.2013.41
Generalized bacterial genome editing using mobile group II introns and Cre‐<i>lox</i>
Cited by: 70
Author(s): Peter J. Enyeart, Steven M. Chirieleison, Mai N. Dao, Jiřı́ Perůtka, Erik M. Quandt, Jun Yao, Jacob T Whitt, Adrian T. Keatinge‐Clay, Alan M. Lambowitz, Andrew D. Ellington
Software Mentions: 1
Published: almost 12 years ago
10.1007/s11557-018-1415-4
ITS2 metabarcoding analysis complements lichen mycobiome diversity data
Cited by: 33
Author(s): Elisa Banchi, D Stanković, Fernando Fernández-Mendoza, Fabrizia Gionechetti, Alberto Pallavicini, Lucía Muggia
Software Mentions: 1
Published: over 6 years ago
10.3390/vaccines8040702
Anti-Tick Microbiota Vaccine Impacts Ixodes ricinus Performance during Feeding
Cited by: 47
Author(s): Lourdes Mateos-Hernández, Dasiel Obregón, Jennifer Mayé, Jérémie Bornères, Nicolas Versillé, José de la Fuente, Agustı́n Estrada-Peña, Adnan Hodžić, Ladislav Šimo, Alejandro Cabezas-Cruz
Software Mentions: 1
Published: about 4 years ago
10.1080/21505594.2018.1462060
Discovery of a <i>mcr-1-</i>bearing plasmid in commensal colistin-resistant <i>Escherichia coli</i> from healthy broilers in Faisalabad, Pakistan
Cited by: 31
Author(s): Jiali Lv, Mashkoor Mohsin, Sheng Lei, Swaminath Srinivas, Raja Talish Wiqar, Jingxia Lin, Youjun Feng
Software Mentions: 1
Published: over 6 years ago
10.1080/21505594.2019.1702797
Complete genome analysis of <i>Vibrio mimicus</i> strain SCCF01, a highly virulent isolate from the freshwater catfish
Cited by: 13
Author(s): Zehui Yu, Erlong Wang, Yi Geng, Kaiyu Wang, Defang Chen, Xiaoli Huang, Ping Ouyang, Zhuang Zuo, Chao Huang, Jing Fang, Lizi Yin, Hongrui Guo, Zhijun Zhong
Software Mentions: 1
Published: almost 5 years ago
10.1080/21505594.2020.1764173
Identification of conditionally essential genes for <i>Streptococcus suis</i> infection in pigs
Cited by: 12
Author(s): Jesús Arenas, Aldert Zomer, José Harders-Westerveen, Hester J. Bootsma, Marien I. de Jonge, Norbert Stockhofe-Zurwieden, Hilde E. Smith, Astrid de Greeff
Software Mentions: 1
Published: over 4 years ago
10.1093/ve/veaa001
The evolution of protein domain repertoires: Shedding light on the origins of the Herpesviridae family
Cited by: 8
Author(s): Anderson F. Brito, John W. Pinney
Software Mentions: 1
Published: almost 5 years ago
10.3390/v9120361
Distribution and Inferred Evolutionary Characteristics of a Chimeric ssDNA Virus Associated with Intertidal Marine Isopods
Cited by: 9
Author(s): Kalia S. I. Bistolas, Ryan M Besemer, Lars G. Rudstam, Ian Hewson
Software Mentions: 1
Published: almost 7 years ago
10.3390/v10060297
Burkholderia cenocepacia Prophages—Prevalence, Chromosome Location and Major Genes Involved
Cited by: 14
Author(s): Bartosz Roszniowski, Siobhán McClean, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: over 6 years ago
10.3390/v12101132
Molecular Insights into Bacteriophage Evolution toward Its Host
Cited by: 10
Author(s): Marina de Leeuw, Maayan Baron, Oshrit Ben David, Ariel Kushmaro
Software Mentions: 1
Published: about 4 years ago
10.3390/v13020285
Phylogeographic Genetic Diversity in the White Sucker Hepatitis B Virus across the Great Lakes Region and Alberta, Canada
Cited by: 1
Author(s): Cynthia R. Adams, Vicki S. Blazer, James Sherry, Robert S. Cornman, Luke R. Iwanowicz
Software Mentions: 1
Published: almost 4 years ago
10.12688/wellcomeopenres.16012.1
The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861)
Cited by: 15
Author(s): Iliana Bista, Shane McCarthy, Jonathan Wood, Zemin Ning, William H. Detrich, Thomas Desvignes, John H. Postlethwait, William Chow, Kerstin Howe, James Torrance, Michelle Smith, Karen Oliver, Eric A. Miska, Richard Durbin
Software Mentions: 1
Published: over 4 years ago
10.1186/s13071-016-1767-z
Bacterial diversity of the American sand fly Lutzomyia intermedia using high-throughput metagenomic sequencing
Cited by: 37
Author(s): Carolina Cunha Monteiro, Luís Eduardo Martinez Villegas, Thaís Bonifácio Campolina, Ana Clara Machado Araújo Pires, José Carlos Miranda, Paulo Filemon Paolucci Pimenta, Nágila Francinete Costa Secundino
Software Mentions: 1
Published: about 8 years ago
10.3390/pathogens10040443
Arthrobacter woluwensis Bacteremia: A Clinical and Genomic Report
Cited by: 6
Author(s): Shuyuan Li, Chin-Chuan Kao, Yucheng GuZhongli Hu, Chih Cheng Lai, Yiping Jiang, Yan–Chiao Mao, Yao‐Ting Huang, Po‐Yu Liu
Software Mentions: 1
Published: over 3 years ago
10.3390/pathogens9050320
Feasibility of Known RNA Polymerase Inhibitors as Anti-SARS-CoV-2 Drugs
Cited by: 26
Author(s): Ujjwal Neogi, Kyle J. Hill, Anoop T. Ambikan, Xiao Heng, Thomas P. Quinn, Siddappa N. Byrareddy, Anders Sönnerborg, Stefan G. Sarafianos, Kamal Singh
Software Mentions: 1
Published: over 4 years ago
10.3390/pathogens10060702
Endosymbiont Capture, a Repeated Process of Endosymbiont Transfer with Replacement in Trypanosomatids Angomonas spp.
Cited by: 2
Author(s): Tomáš Skalický, João M. P. Alves, Anderson C. Morais, Jana Režnarová, Anzhelika Butenko, Julius Lukeš, Myrna G. Serrano, Gregory A. Buck, Marta Maria Geraldes Teixeira, Erney P. Camargo, Mandy Sanders, James A. Cotton, Vyacheslav Yurchenko, Alexei Y. Kostygov
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.3776
Genome-wide identification of the<i>MADS-box</i>transcription factor family in pear (<i>Pyrus bretschneideri</i>) reveals evolution and functional divergence
Cited by: 33
Author(s): Runze Wang, Meiling Ming, Jiaming Li, Dongqing Shi, Xin Qiao, Leiting Li, Shaoling Zhang, Wu Jun
Software Mentions: 1
Published: about 7 years ago
10.7717/peerj.2388
Genome-wide identification and characterization of GRAS transcription factors in sacred lotus (<i>Nelumbo nucifera</i>)
Cited by: 30
Author(s): Yu Wang, Shenglu Shi, Ying Zhou, Yu Zhou, Jie Yang, Xiao‐Qing Tang
Software Mentions: 1
Published: about 8 years ago
10.7717/peerj.10961
Genome-wide identification of HSF family in peach and functional analysis of <i>PpHSF5</i> involvement in root and aerial organ development
Cited by: 13
Author(s): Bin Tan, Yan Liu, Huannan Li, Xiaodong Lian, Jun Cheng, Wei Wang, Xianbo Zheng, Xiaobei Wang, Jidong Li, Ye Xia, Langlang Zhang, Zhiqian Li, Jiancan Feng
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.1961
Heat shock factors in tomatoes: genome-wide identification, phylogenetic analysis and expression profiling under development and heat stress
Cited by: 62
Author(s): Xuedong Yang, Weimin Zhu, Hui Zhang, Na Liu, Shoubo Tian
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.3450
Diversity analysis of gut microbiota in osteoporosis and osteopenia patients
Cited by: 136
Author(s): Jihan Wang, Yangyang Wang, Wenjie Gao, Biao Wang, Heping Zhao, Yuhong Zeng, Yanhong Ji, Dingjun Hao
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.10313
High-quality genome assembly of <i>Metaphire vulgaris</i>
Cited by: 4
Author(s): Feng Jin, Zhaoli Zhou, Qi Guo, Zhenwen Liang, Ruoyu Yang, Jibao Jiang, Yanlin He, Qi Zhao, Qiang Zhao
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.10934
Genome-wide identification and characterization of the <i>OFP</i> gene family in Chinese cabbage (<i>Brassica rapa</i> L. ssp. <i>pekinensis</i>)
Cited by: 1
Author(s): Ruihua Wang, Han TaiLi, Jifeng Sun, Liang Xu, Jingjing Fan, Hui Cao, Chunxiang Liu
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.1950
Genome sequencing and analysis of the first complete genome of<i>Lactobacillus kunkeei</i>strain MP2, an<i>Apis mellifera</i>gut isolate
Cited by: 19
Author(s): Freddy Asenjo, Alejandro Olmos, Patricia Henríquez‐Piskulich, Víctor Polanco, Patricia Aldea, Juan A. Ugalde, Annette N. Trombert
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.7509
Genome-wide identification and expression analysis of the <i>VQ</i> gene family in soybean (<i>Glycine max</i>)
Cited by: 13
Author(s): Yongbin Wang, Zhenfeng Jiang, Zhenxiang Li, Youbing Zhao, Weiwei Tan, Zhaojun Liu, Shaobin Cui, Xiongbin Yu, Jun Ma, Guangjin Wang, Wenbin Li
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.4796
Genome-wide characterization and expression analysis of GRAS gene family in pepper (<i>Capsicum annuum</i>L.)
Cited by: 39
Author(s): Baoling Liu, Yan Sun, Jinai Xue, Xiaoyun Jia, Runzhi Li
Software Mentions: 1
Published: over 6 years ago
10.7717/peerj.10483
Genome-wide member identification, phylogeny and expression analysis of PEBP gene family in wheat and its progenitors
Cited by: 9
Author(s): Lü Dong, Yue Lu, Shubing Liu
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.9309
Mitochondrial genome of the nonphotosynthetic mycoheterotrophic plant <i>Hypopitys monotropa</i>, its structure, gene expression and RNA editing
Cited by: 16
Author(s): Victoria Shtratnikova, Mikhail I. Schelkunov, Aleksey A. Penin, Maria D. Logacheva
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.10774
Comparative analysis of the complete plastid genomes of <i>Mangifera</i> species and gene transfer between plastid and mitochondrial genomes
Cited by: 6
Author(s): Ying-Feng Niu, Chengwen Gao, Jin Liu
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.8273
The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns
Cited by: 15
Author(s): Sonja I. Repetti, Christopher J. Jackson, Louise M. Judd, Ryan R. Wick, Kathryn E. Holt, Heroen Verbruggen
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.10275
Cytological and molecular characterizations of a novel 2A nullisomic line derived from a widely-grown wheat cultivar Zhoumai 18 conferring male sterility
Cited by: 1
Author(s): Zhixin Jiao, Xin‐Xin Zhu, Huijuan Li, Zhitao Liu, Xinyi Huang, Nan Wu, Junhang An, Junchang Li, Jing Zhang, Yumei Jiang, Qiaoyun Li, Zengjun Qi, Jishan Niu
Software Mentions: 1
Published: about 4 years ago
10.7717/peerj.8064
Comparative genomic analysis of the <i>PAL</i> genes in five Rosaceae species and functional identification of Chinese white pear
Cited by: 14
Author(s): Guohui Li, Han Wang, Xi Cheng, Xueqiang Su, Yu Zhao, Tao‐Shan Jiang, Jin Qiu, Yi Lin, Yongping Cai
Software Mentions: 1
Published: almost 5 years ago
10.7717/peerj.12221
Key <i>auxin response factor</i> (ARF) genes constraining wheat tillering of mutant <i>dmc</i>
Cited by: 8
Author(s): Junchang Li, Yumei Jiang, Jing Zhang, Yongjing Ni, Zhixin Jiao, Huijuan Li, Ting Wang, Peipei Zhang, Wenlong Guo, Lei Li, Hongjie Liu, Hairong Zhang, Qiaoyun Li, Jishan Niu
Software Mentions: 1
Published: about 3 years ago
10.7717/peerj.3269
Accumulation and expression of multiple antibiotic resistance genes in <i>Arcobacter cryaerophilus</i> that thrives in sewage
Cited by: 27
Author(s): Jess A. Millar, Rahul Raghavan
Software Mentions: 1
Published: over 7 years ago
10.7717/peerj.7511
Genome-wide identification and characterization of the <i>Hsp70</i> gene family in allopolyploid rapeseed (<i>Brassica napus</i> L.) compared with its diploid progenitors
Cited by: 7
Author(s): Ziwei Liang, Mengdi Li, Zhengyi Liu, Jianbo Wang
Software Mentions: 1
Published: over 5 years ago
10.7717/peerj.8727
Genome-wide investigation of WRKY transcription factors in Tartary buckwheat (<i>Fagopyrum tataricum</i>) and their potential roles in regulating growth and development
Cited by: 14
Author(s): Wenjun Sun, Zhaotang Ma, Hui Chen, Moyang Liu
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj.11371
The Sugar Transporter family in wheat (<i>Triticum aestivum</i>. L): genome-wide identification, classification, and expression profiling during stress in seedlings
Cited by: 4
Author(s): Hongzhan Liu, Chaoqiong Li, Qiao Lin, Lizong Hu, Xueqin Wang, Junsheng Wang, Xianle Ruan, Guangyu Robert Yang, Yin Guo, Chunping Wang, Zhongke Sun, Keshi Ma, Lili Li
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.3955
Genome-wide identification and characterization of GRAS transcription factors in tomato (<i>Solanum lycopersicum</i>)
Cited by: 44
Author(s): Niu Yiling, Tingting Zhao, Xiangyang Xu, Jin-Fu Li
Software Mentions: 1
Published: about 7 years ago
10.1007/s00425-021-03596-2
Genome-wide identification and expression analysis of the Brassica oleracea L. chitin-binding genes and response to pathogens infections
Cited by: 6
Author(s): Mingzhao Zhu, Shujin Lu, Mu Zhuang, Yangyong Zhang, Honghao Lv, Jialei Ji, Xilin Hou, Zhiyuan Fang, Yong Wang, Limei Yang
Software Mentions: 1
Published: over 3 years ago
10.1111/pbi.12962
Recent polyploidization events in three<i>Saccharum</i>founding species
Cited by: 36
Author(s): Jisen Zhang, Qing Zhang, Leiting Li, Haibao Tang, Qiong Zhang, Chen Yang, Jie Arrow, Xingtan Zhang, Aiqin Wang, Chenyong Miao, Ray Ming
Software Mentions: 1
Published: over 6 years ago
10.1111/pbi.12989
Genome sequence and genetic transformation of a widely distributed and cultivated poplar
Cited by: 55
Author(s): Jianchao Ma, Dongshi Wan, Bingbing Duan, Xiaotao Bai, Qiuxian Bai, Ningning Chen, Tao Ma
Software Mentions: 1
Published: about 6 years ago
10.1111/pbi.13456
Long‐read sequencing reveals widespread intragenic structural variants in a recent allopolyploid crop plant
Cited by: 38
Author(s): Harmeet Singh Chawla, HueyTyng Lee, Iulian Gabur, Paul Vollrath, Suriya Tamilselvan‐Nattar‐Amutha, Christian Obermeier, Sarah Schiessl, Jia‐Ming Song, Kede Liu, Liang Guo, Isobel A. P. Parkin, Rod J. Snowdon
Software Mentions: 1
Published: about 4 years ago
10.1111/pbi.12831
Construction of <i>Agropyron</i> Gaertn. genetic linkage maps using a wheat 660K <scp>SNP</scp> array reveals a homoeologous relationship with the wheat genome
Cited by: 63
Author(s): Shumin Zhou, Jinpeng Zhang, Yonghe Che, Weihua Liu, Yuqing Lu, Xinming Yang, Xiuquan Li, Jizeng Jia, Xu Liu, Lihui Li
Software Mentions: 1
Published: about 7 years ago
10.1111/pbi.13195
An ultra‐high‐density genetic map provides insights into genome synteny, recombination landscape and taproot skin colour in radish ( <i>Raphanus sativus</i> L.)
Cited by: 35
Author(s): Xiaobo Luo, Liang Xu, Yan Wang, Junhui Dong, Yinglong Chen, Mingjia Tang, Lu Fan, Yuelin Zhu, Liwang Liu
Software Mentions: 1
Published: over 5 years ago
10.1111/pbi.12606
A step change in the transfer of interspecific variation into wheat from <i>Amblyopyrum muticum</i>
Cited by: 95
Author(s): Julie King, Surbhi Grewal, Caiyun Yang, Stella Hubbart, Duncan Scholefield, Stephen Ashling, Stella Hubbart‐Edwards, Alexandra M. Allen, Amanda Burridge, Claire Bloor, Alessandro Davassi, Glacy Jaqueline da Silva, K. J. Chalmers, I. P. King
Software Mentions: 1
Published: about 8 years ago
10.1111/j.1467-7652.2012.00710.x
Large‐scale development of cost‐effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
Cited by: 208
Author(s): Pavana J Hiremath, Ashish Kumar, R. Varma Penmetsa, Andrew Farmer, Jessica A. Schlueter, Siva K. Chamarthi, Adam M. Whaley, Noelia Carrasquilla‐Garcia, Pooran M. Gaur, Hari D. Upadhyaya, P. B. Kavi Kishor, Trushar Shah, Douglas R. Cook, Rajeev K. Varshney
Software Mentions: 1
Published: over 12 years ago
10.1186/1746-4811-7-38
An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform
Cited by: 51
Author(s): Tongwu Zhang, Xiaowei Zhang, Songnian Hu, Jun Yu
Software Mentions: 1
Published: almost 13 years ago
10.1007/s11105-014-0730-4
Remnants of the Legume Ancestral Genome Preserved in Gene-Rich Regions: Insights from Lupinus angustifolius Physical, Genetic, and Comparative Mapping
Cited by: 17
Author(s): Michał Książkiewicz, Andrzej Zieleziński, Katarzyna Wyrwa, Anna Szczepaniak, Sandra Rychel, Wojciech M. Karłowski, B. Wolko, B. Naganowska
Software Mentions: 1
Published: over 10 years ago
10.1111/ppa.13189
Cherry picking by pseudomonads: After a century of research on canker, genomics provides insights into the evolution of pathogenicity towards stone fruits
Cited by: 14
Author(s): Michelle T. Hulin, Robert W. Jackson, Richard J. Harrison, John W. Mansfıeld
Software Mentions: 1
Published: over 4 years ago
10.3390/plants8020030
Evolutionary Analysis of GH3 Genes in Six Oryza Species/Subspecies and Their Expression under Salinity Stress in Oryza sativa ssp. japonica
Cited by: 35
Author(s): Weilong Kong, Hua Zhong, Xiaoxiao Deng, Mayank Gautam, Ziyun Gong, Yue Zhang, Gangqing Zhao, Chang Liu, Yangsheng Li
Software Mentions: 1
Published: almost 6 years ago
10.3390/plants10020227
Genome-Wide Analysis of MDHAR Gene Family in Four Cotton Species Provides Insights into Fiber Development via Regulating AsA Redox Homeostasis
Cited by: 9
Author(s): Fangfang Zhou, Bowen Zheng, Fei Wang, Aiping Cao, Shuangquan Xie, Xifeng Chen, Joel Schick, Xiang Jin, Hongbin Li
Software Mentions: 1
Published: almost 4 years ago
10.3390/plants10010016
Genomic Organization, Phylogenetic Comparison, and Differential Expression of the Nuclear Factor-Y Gene Family in Apple (Malus Domestica)
Cited by: 9
Author(s): Yanjie Qu, Yaping Wang, Jun Zhu, Yugang Zhang, Hongmin Hou
Software Mentions: 1
Published: almost 4 years ago
10.3390/plants9040469
Assembly and Analysis of the Complete Mitochondrial Genome of Capsella bursa-pastoris
Cited by: 13
Author(s): Denis O. Omelchenko, Maksim Makarenko, Artem S. Kasianov, Mikhail I. Schelkunov, Maria D. Logacheva, Aleksey A. Penin
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9111439
Genome Wide Identification and Comparative Analysis of the Serpin Gene Family in Brachypodium and Barley
Cited by: 9
Author(s): Shazia Rehman, Bodil Jørgensen, Amer Ejaz, Riffat Batool, Samar Naseer, Søren K. Rasmussen
Software Mentions: 1
Published: about 4 years ago
10.3390/plants9010032
Evolutionary Analysis of Calcium-Dependent Protein Kinase in Five Asteraceae Species
Cited by: 3
Author(s): Liping Zhu, Bowen Zheng, Wangyang Song, Hongbin Li, Xiang Jin
Software Mentions: 1
Published: almost 5 years ago
10.3390/plants9121661
Genome-Wide Identification of the Vacuolar H+-ATPase Gene Family in Five Rosaceae Species and Expression Analysis in Pear (Pyrus bretschneideri)
Cited by: 2
Author(s): Hongsheng Zhou, Wen Huang, Shufen Luo, Huali Hu, Yingtong Zhang, Leigang Zhang, Pengxia Li
Software Mentions: 1
Published: almost 4 years ago
10.3390/plants8110438
Developing Chloroplast Genomic Resources from 25 Avena Species for the Characterization of Oat Wild Relative Germplasm
Cited by: 4
Author(s): Yong‐Bi Fu, Pingchuan Li, Bill Biligetu
Software Mentions: 1
Published: about 5 years ago
10.3390/plants10030538
The Draft Genome of a Flat Peach (Prunus persica L. cv. ‘124 Pan’) Provides Insights into Its Good Fruit Flavor Traits
Cited by: 16
Author(s): Aidi Zhang, Hui Zhou, Xiaohan Jiang, Yuepeng Han, Xiujun Zhang
Software Mentions: 1
Published: over 3 years ago
10.3390/plants10091774
The Insights into Mitochondrial Genomes of Sunflowers
Cited by: 6
Author(s): Maksim Makarenko, Denis O. Omelchenko, А. В. Усатов, В. А. Гаврилова
Software Mentions: 1
Published: about 3 years ago
10.3390/plants9030385
Cytoplasm Types Affect DNA Methylation among Different Cytoplasmic Male Sterility Lines and Their Maintainer Line in Soybean (Glycine max L.)
Cited by: 2
Author(s): Chunjing Lin, Bao Peng, Yongkuan Li, Pengnian Wang, Guolong Zhao, Xiaoyang Ding, Rong Li, Limei Zhao, Chunbao Zhang
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9101350
Identification and Analysis of NBS-LRR Genes in Actinidia chinensis Genome
Cited by: 14
Author(s): Tao Wang, Zhemin Jia, Jiyu Zhang, Min Liu, Zhengfu Guo, Gang Wang
Software Mentions: 1
Published: about 4 years ago
10.3390/plants8120526
Identification, Evolution, and Expression Profiling of Histone Lysine Methylation Moderators in Brassica rapa
Cited by: 7
Author(s): Gaofeng Liu, Nadeem Khan, Ma Xl, Xilin Hou
Software Mentions: 1
Published: about 5 years ago
10.3390/plants9050618
Mitochondrial Genome of Fagopyrum esculentum and the Genetic Diversity of Extranuclear Genomes in Buckwheat
Cited by: 12
Author(s): Maria D. Logacheva, Mikhail I. Schelkunov, А Н Фесенко, Artem S. Kasianov, Aleksey A. Penin
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9020233
In Silico Identification of QTL-Based Polymorphic Genes as Salt-Responsive Potential Candidates through Mapping with Two Reference Genomes in Rice
Cited by: 5
Author(s): Buddini Abhayawickrama, D. R. Gimhani, N. S. Kottearachchi, Venura Herath, D.S. Liyanage, Prasad Senadheera
Software Mentions: 1
Published: almost 5 years ago
10.3390/plants9080937
Identification and Bioinformatic Analysis of the GmDOG1-Like Family in Soybean and Investigation of Their Expression in Response to Gibberellic Acid and Abscisic Acid
Cited by: 3
Author(s): Yingzeng Yang, Chuan Zheng, Umashankar Chandrasekaran, Yu Liu, Chunyan Liu, Pu Tian, Xiaochun Wang, Junbo Du, Jiang Liu, Feng Yang, Taiwen Yong, Wenyu Yang, Weiguo Liu, Kai Shu
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9081028
Genome-Wide Identification of the ABA Receptors Genes and Their Response to Abiotic Stress in Apple
Cited by: 12
Author(s): Hongmin Hou, Lingling Lv, Heqiang Huo, Dai Hirata, Yugang Zhang
Software Mentions: 1
Published: over 4 years ago
10.3390/plants10071444
CAD Genes: Genome-Wide Identification, Evolution, and Their Contribution to Lignin Biosynthesis in Pear (Pyrus bretschneideri)
Cited by: 4
Author(s): Kaijie Qi, Xiaofei Song, Yazhou Yuan, Jianping Bao, Xin Gong, Xiaosan Huang, Khanizadeh Shahrokh, Shaoling Zhang, Shutian Tao
Software Mentions: 1
Published: over 3 years ago
10.3390/plants8070188
Genome-Wide Analysis of Serine/Arginine-Rich Protein Family in Wheat and Brachypodium distachyon
Cited by: 16
Author(s): Shoukun Chen, Jiawei Li, Yue Liu, Haifeng Li
Software Mentions: 1
Published: over 5 years ago
10.3390/plants9080999
Unravelling Cotton Nonexpressor of Pathogenesis-Related 1(NPR1)-Like Genes Family: Evolutionary Analysis and Putative Role in Fiber Development and Defense Pathway
Cited by: 8
Author(s): Neha Agarwal, Rakesh K. Srivastava, Akash Verma, Krishan Mohan, Babita Singh, Praveen Chandra Verma
Software Mentions: 1
Published: over 4 years ago
10.3390/plants10081626
Genome-Wide Identification, Phylogenetic and Expression Pattern Analysis of GATA Family Genes in Cucumber (Cucumis sativus L.)
Cited by: 9
Author(s): Kaijing Zhang, Jia Li, Dekun Yang, Yuchao Hu, Martin Kagiki Njogu, Panqiao Wang, Xingrong Lu, Chao‐Guo Yan
Software Mentions: 1
Published: over 3 years ago
10.3390/plants8100393
Genome-Wide Identification of WRKY Transcription Factors in the Asteranae
Cited by: 16
Author(s): Haiyang Guo, Yantong Zhang, Zhuo Wang, Limei Lin, Minghui Cui, Yong Long, Zhaobin Xing
Software Mentions: 1
Published: about 5 years ago
10.3390/plants9050551
Mutagenic Effect of Three Ion Beams on Rice and Identification of Heritable Mutations by Whole Genome Sequencing
Cited by: 13
Author(s): Yunchao Zheng, Shan Li, Jianzhong Huang, Haidong Fu, Libin Zhou, Yoshiya Furusawa, Qingyao Shu
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9040455
Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus
Cited by: 28
Author(s): Shilin Cao, Ying Wang, Xuting Li, Fei Gao, Jinchao Feng, Yijun Zhou
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pbio.0060177
Population Genomic Analysis of Strain Variation in Leptospirillum Group II Bacteria Involved in Acid Mine Drainage Formation
Cited by: 125
Author(s): Stephanie Simmons, Genevieve DiBartolo, Vincent J. Denef, Daniela S. Aliaga Goltsman, Michael P. Thelen, Jillian F. Banfield
Software Mentions: 1
Published: over 16 years ago
10.1371/journal.pcbi.1003788
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model
Cited by: 48
Author(s): Andries J. van Tonder, Shilan Mistry, James E. Bray, Dorothea M. C. Hill, Alison J. Cody, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley, Martin C. J. Maiden, Angela B. Brueggemann
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pcbi.1006533
A Pareto approach to resolve the conflict between information gain and experimental costs: Multiple-criteria design of carbon labeling experiments
Cited by: 14
Author(s): Katharina Nöh, Sebastian Niedenführ, Martin Beyß, Wolfgang Wiechert
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pcbi.1000200
Fusion and Fission of Genes Define a Metric between Fungal Genomes
Cited by: 23
Author(s): Pascal Durrens, Macha Nikolski, David James Sherman
Software Mentions: 1
Published: about 16 years ago
10.1371/journal.pgen.1001061
Telomere Disruption Results in Non-Random Formation of De Novo Dicentric Chromosomes Involving Acrocentric Human Chromosomes
Cited by: 61
Author(s): Kaitlin M. Stimpson, Ihn Young Song, Anna Jauch, Heidi Holtgreve-Grez, Karen Hayden, Joanna M. Bridger, Beth A. Sullivan
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pgen.1008116
Infection mechanisms and putative effector repertoire of the mosquito pathogenic oomycete Pythium guiyangense uncovered by genomic analysis
Cited by: 24
Author(s): Danyu Shen, Zhaoyang Tang, Wei Cong, Jing Wang, Yue Dong, Yang Chen, Yun Wei, Biao Cheng, Meiqian Zhang, Laura J. Grenville‐Briggs, Brett M. Tyler, Daolong Dou, Ai Xia
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pgen.1006025
Mapping Topoisomerase IV Binding and Activity Sites on the E. coli Genome
Cited by: 37
Author(s): Hafez El Sayyed, Ludovic Le Chat, Elise Lebailly, Elise Vickridge, C. Pagès, François Cornet, Marco Cosentino Lagomarsino, Olivier Espéli
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pgen.1000714
Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides
Cited by: 152
Author(s): Paul J. McMurdie, Sebastian Behrens, Jochen A. Müller, Jonathan Göke, Kirsti M. Ritalahti, Ryan D. Wagner, Eugene Goltsman, Alla Lapidus, Susan Holmes, Frank E. Löffler, Alfred M. Spormann
Software Mentions: 1
Published: about 15 years ago