10.1016/j.dib.2019.104203

Genome-wide copy number variant data for inflammatory bowel disease in a caucasian population
Cited by: 0
Author(s): Svetlana Frenkel, Çharles N. Bernstein, Yong Won Jin, Michael Sargent, Qin Kuang, Wenxin Jiang, John Wei, Bhooma Thiruvahindrapuram, Stephen W. Scherer, Pingzhao Hu
Software Mentions: 1
Published: about 7 years ago

10.1016/j.dib.2020.106341

Genome sequencing data for wild and cultivated bananas, plantains and abacá
Cited by: 4
Author(s): Christine Sambles, Lakshmipriya Venkatesan, Olanrewaju M. Shittu, James W. Harrison, Karen Moore, Leena Tripathi, Murray Grant, Rachel Warmington, David J. Studholme
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-020-6765-z

Comparative genomic analysis of 142 bacteriophages infecting Salmonella enterica subsp. enterica
Cited by: 14
Author(s): Ruimin Gao, Sohail Naushad, Sylvain Moineau, Roger C. Levesque, Lawrence Goodridge, Dele Ogunremi
Software Mentions: 1
Published: over 6 years ago

10.1007/s00253-016-7924-7

The temperate Burkholderia phage AP3 of the Peduovirinae shows efficient antimicrobial activity against B. cenocepacia of the IIIA lineage
Cited by: 10
Author(s): Bartosz Roszniowski, Agnieszka Łątka, Barbara Maciejewska, Dieter Vandenheuvel, Tomasz Olszak, Yves Briers, Giles Holt, Miguel A. Valvano, Rob Lavigne, Darren Smith, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: almost 10 years ago

10.1093/database/bav124

CCSI: a database providing chromatin–chromatin spatial interaction information
Cited by: 13
Author(s): Xiaowei Xie, Wenbin Ma, Zhou Songyang, Zhenhua Luo, Junfeng Huang, Zhiming Dai, Yuanyan Xiong
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-016-2846-4

Genomic mechanisms for cold tolerance and production of exopolysaccharides in the Arctic cyanobacterium Phormidesmis priestleyi BC1401
Cited by: 66
Author(s): Nathan Chrismas, Gary Barker, Alexandre M. Anesio, Patricia Sánchez‐Baracaldo
Software Mentions: 1
Published: about 10 years ago

10.1038/s41598-019-52362-8

Cannabidiol Regulates Gene Expression in Encephalitogenic T cells Using Histone Methylation and noncoding RNA during Experimental Autoimmune Encephalomyelitis
Cited by: 13
Author(s): Xiaoming Yang, Marpe Bam, Prakash Nagarkatti
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2156-12-60

A genetic linkage map and comparative mapping of the prairie vole (Microtus ochrogaster) genome
Cited by: 15
Author(s): Lisa A. McGraw, Jamie K. Davis, Larry J. Young, James W. Thomas
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-017-4044-4

Genome-wide analysis of basic helix-loop-helix (bHLH) transcription factors in Brachypodium distachyon
Cited by: 69
Author(s): Xinhuan Niu, Yuxiang Guan, Shoukun Chen, Haifeng Li
Software Mentions: 1
Published: about 9 years ago

10.1186/s12863-017-0596-1

Characterization of the late embryogenesis abundant (LEA) proteins family and their role in drought stress tolerance in upland cotton
Cited by: 169
Author(s): Richard Odongo Magwanga, Lei Pu, Joy Nyangasi Kirungu, Hejun Lu, Xingxing Wang, Xiaoyan Cai, Zhenmei Zhang, Haron Salih, Kunbo Wang, Fang Liu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-017-3714-6

A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection
Cited by: 10
Author(s): Trần Thị Ngọc Dung, Pham Thanh Duy, October M. Sessions, Uma K. Sangumathi, Voong Vinh Phat, Pham Thi Thanh Tam, Nguyen Thi Nguyen To, Tran My Phuc, Tran Thi Hong Chau, Nguyen Ngoc Minh Chau, Ngoc Nguyen Minh, Guy Thwaites, Maia A. Rabaa, Stephen Baker
Software Mentions: 1
Published: over 9 years ago

10.1002/ece3.3762

Genome-wide identification, expression profiling, and target gene analysis of microRNAs in the Onion thrips,<i>Thrips tabaci</i>Lindeman (Thysanoptera: Thripidae), vectors of tospoviruses (Bunyaviridae)
Cited by: 8
Author(s): K. B. Rebijith, R. Asokan, Ranjitha H. Hande, S. J. Gawande, N. K. Krishna Kumar
Software Mentions: 1
Published: over 8 years ago

10.1002/ece3.5620

Analysis of new retrogenes provides insight into dog adaptive evolution
Cited by: 6
Author(s): Xiang Gao, Yan Li, Adeyinka Abiola Adetula, Yu Wei Wu, Hong Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2156-15-59

Mapping dynamic QTL for plant height in triticale
Cited by: 61
Author(s): Tobias Würschum, Wenxin Liu, Lucas Busemeyer, Matthew R. Tucker, Jochen C. Reif, Elmar A. Weissmann, Volker Hahn, Arno Ruckelshausen, Hans Peter Maurer
Software Mentions: 1
Published: almost 13 years ago

10.1080/22221751.2020.1852058

Prolonged shedding of severe acute respiratory syndrome coronavirus 2 in patients with COVID-19
Cited by: 63
Author(s): Qian Li, Xiao Zheng, Xu Shen, Rui Hao, Xi Wang, Qi Wang, Bei Li, Wei Zhang, Yan Zhu, Ruijiao Jiang, Kai Zhao, Hui Wang, Zheng Li Shi, Hui Lan Zhang, Rong Du, Peng Zhou
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12863-020-00885-9

Characterization, identification and expression profiling of genome-wide R-genes in melon and their putative roles in bacterial fruit blotch resistance
Cited by: 5
Author(s): Md. Rafiqul Islam, Mohammad Rashed Hossain, Denison Michael Immanuel Jesse, Hee-Jeong Jung, Hoy‐Taek Kim, Jong-In Park, Ill–Sup Nou
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-54759-x

Culture of Methanogenic Archaea from Human Colostrum and Milk
Cited by: 38
Author(s): Amadou Hamidou Togo, Ghiles Grine, Saber Khelaifia, C. Robert, Véronique Brévaut, Aurélia Caputo, Emeline Baptiste, M Bonnet, Anthony Levasseur, Michel Drancourt, Matthieu Million, Didier Raoult
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-018-5198-4

Whole genome sequencing of Trypanosoma cruzi field isolates reveals extensive genomic variability and complex aneuploidy patterns within TcII DTU
Cited by: 43
Author(s): João Luís Reis-Cunha, Rodrigo P. Baptista, Gabriela F. Rodrigues-Luiz, Anderson Coqueiro-dos-Santos, Hugo O. Valdivia, Laila Viana de Almeida, Mariana Santos Cardoso, Daniella Alchaar D’Ávila, Fernando H. C. Dias, Ricardo Toshio Fujiwara, Lúcia Maria da Cunha Galvão, Égler Chiari, Gustavo C. Cerqueira, Daniella Castanheira Bartholomeu
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-15-469

Comparative genomic analysis of Mycobacterium tuberculosis clinical isolates
Cited by: 32
Author(s): Fei Liu, Yongfei Hu, Qi Wang, Hong Min Li, George F. Gao, Cui Hua Liu, Baoli Zhu
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13072-016-0068-2

The chicken erythrocyte epigenome
Cited by: 23
Author(s): Sanzida Jahan, Wayne Xu, Shihua He, Carolina González, Geneviève P. Delcuve, James R. Davie
Software Mentions: 1
Published: over 10 years ago

10.1186/s12863-015-0184-1

Copy number variants encompassing Mendelian disease genes in a large multigenerational family segregating bipolar disorder
Cited by: 17
Author(s): Rachel L. Kember, Benjamin Georgi, Joan E. Bailey-Wilson, Dwight Stambolian, Steven M. Paul, Maja Bućan
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-018-5023-0

Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)
Cited by: 10
Author(s): Alejandro Aguilar, Yolanda Mora, Araceli Dávalos, Lourdes Girard, Jaime Mora, Humberto Peralta
Software Mentions: 1
Published: about 8 years ago

10.1038/ejhg.2017.128

The Y chromosome: a blueprint for men’s health?
Cited by: 85
Author(s): Akhlaq Ahmed Maan, James Eales, Artur Akbarov, Joshua Rowland, Xiaoguang Xu, Mark A. Jobling, Fadi J. Charchar, Maciej Tomaszewski
Software Mentions: 1
Published: about 9 years ago

10.1038/s41431-019-0343-3

Using dried blood spot samples from a trio for linked-read whole-exome sequencing
Cited by: 6
Author(s): Ólavur Mortensen, Leivur N. Lydersen, Katrin Didriksen Apol, Guðrið Andorsdóttir, Bjarni á Steig, Noomi Gregersen
Software Mentions: 1
Published: over 7 years ago

10.1111/eva.13062

Application of simultaneous selective pressures slows adaptation
Cited by: 0
Author(s): Lauren M.F. Merlo, Kathleen Sprouffske, Taylor C. Howard, Kristin L. Gardiner, Aleah F. Caulin, Steven M. Blum, Perry Evans, Antonio Bedalov, Paul D. Sniegowski, Carlo C. Maley
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2148-11-9

Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family
Cited by: 92
Author(s): Eudald Illa, Daniel J. Sargent, Elena López‐Girona, Jill M. Bushakra, Alessandro Cestaro, Ross N. Crowhurst, Massimo Pindo, Antonio G. Cabrera, Esther van der Knaap, Amy Iezzoni, Susan E. Gardiner, Riccardo Velasco, Pere Arús, David Chagné, Michela Troggio
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-020-07290-7

Genome-wide identification, evolution and expression analysis of the aspartic protease gene family during rapid growth of moso bamboo (Phyllostachys edulis) shoots
Cited by: 7
Author(s): Xiaqin Wang, Xinyang Yan, Shubin Li, Jiangni Yun, Lianfeng Gu, Shuangquan Zou, Jin Zhang, Bobin Liu
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00253-016-7928-3

Klebsiella phages representing a novel clade of viruses with an unknown DNA modification and biotechnologically interesting enzymes
Cited by: 42
Author(s): Barbara Maciejewska, Bartosz Roszniowski, Akbar Espaillat, Agata Kęsik-Szeloch, Grażyna Majkowska-Skrobek, Andrew M. Kropinski, Yves Briers, Felipe Cava, Rob Lavigne, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: almost 10 years ago

10.12688/f1000research.2-258.v1

C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison
Cited by: 28
Author(s): Ilya Minkin, Hoa Pham, Ekaterina V. Starostina, Nikolay Vyahhi, Son Pham
Software Mentions: 1
Published: almost 13 years ago

10.12688/f1000research.14383.1

Case Report: Exome sequencing reveals recurrent RETSAT mutations and a loss-of-function POLDIP2 mutation in a rare undifferentiated tongue sarcoma
Cited by: 9
Author(s): Jason Ying Kuen Chan, P.W.F. Poon, Yong Zhang, Cherrie W K Ng, Wen Piao, Meng Ma, Kevin Y. Yip, Amy B.W. Chan, Vivian Wai Yan Lui
Software Mentions: 1
Published: over 8 years ago

10.3390/foods10081701

Codesign of Food System and Circular Economy Approaches for the Development of Livestock Feeds from Insect Larvae
Cited by: 20
Author(s): Sandeep Jagtap, Guillermo García-García, Linh Duong, Mark Swainson, Wayne Martindale
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-57942-7

Analysis of Copy-Number Variations and Feline Mammary Carcinoma Survival
Cited by: 8
Author(s): José Luis Granados-Soler, Kirsten Bornemann-Kolatzki, Julia Beck, Bertram Brenig, Ekkehard Schütz, Daniela Simon Betz, Johannes Junginger, M. Hewicker‐Trautwein, Hugo Murua Escobar, Ingo Nolte
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-021-07647-6

Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response
Cited by: 20
Author(s): Xiaomin Xu, Lili Zhang, Wenhui Zhao, Liang Fu, Yuxuan Han, Keke Wang, Luyu Yan, Ye Li, Xiao­hong Zhang, Donghong Min
Software Mentions: 1
Published: over 5 years ago

10.3389/fnagi.2021.706765

Identification of Gut Microbiome Signatures in Patients With Post-stroke Cognitive Impairment and Affective Disorder
Cited by: 10
Author(s): Yinting Huang, Zibin Shen, Wenzhen He
Software Mentions: 1
Published: about 5 years ago

10.1186/s12864-017-4176-6

Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus
Cited by: 18
Author(s): Nadia Raboanatahiry, Hongbo Chao, Liangxing Guo, Jianping Gan, Jun Xiang, Mingli Yan, Libin Zhang, Liang Yu, Maoteng Li
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-58271-5

Genome-wide SNP identification in Prunus rootstocks germplasm collections using Genotyping-by-Sequencing: phylogenetic analysis, distribution of SNPs and prediction of their effect on gene function
Cited by: 20
Author(s): Verónica Guajardo, Simón Solís, Rubén Almada, Christopher Saski, Ksenija Gašić, María Ángeles Moreno Sánchez
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-016-2968-8

Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in Brachypodium distachyon
Cited by: 53
Author(s): Licao Cui, Kewei Feng, Mengxing Wang, Meng Wang, Pingchuan Deng, Weining Song, Xiaojun Nie
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-019-5774-2

Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics
Cited by: 9
Author(s): Mahsa Mousavi‐Derazmahalleh, Steven Chang, Geoff Thomas, Mark Derbyshire, Philipp E. Bayer, David Edwards, Matthew N. Nelson, William Erskine, Francisco J. López-Ruiz, Jon Clements, James K. Hane
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-018-5010-5

In vivo evolution of drug-resistant Mycobacterium tuberculosis in patients during long-term treatment
Cited by: 17
Author(s): Yuhui Xu, Fei Liu, Suting Chen, Juan Wu, Yongfei Hu, Baoli Zhu, Zhaogang Sun
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-015-1435-2

Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260T, a psychrotrophic lactic acid bacterium isolated from silage
Cited by: 40
Author(s): Yasuhiro Tanizawa, Masanori Tohno, Eli Kaminuma, Yasukazu Nakamura, Masanori Arita
Software Mentions: 1
Published: over 11 years ago

10.3389/fcell.2021.670145

The Inhibition of B7H3 by 2-HG Accumulation Is Associated With Downregulation of VEGFA in IDH Mutated Gliomas
Cited by: 3
Author(s): Mengli Zhang, Huaichao Zhang, Minjie Fu, Jingwen Zhang, Cheng Zhang, Yingying Lv, Fengfeng Fan, Jinsen Zhang, Hao Xu, Dan Ye, Hui Yang, Wei Hua, Ying Mao
Software Mentions: 1
Published: over 5 years ago

10.3389/fcimb.2021.629116

Characterization of a Deep Sea Bacillus toyonensis Isolate: Genomic and Pathogenic Features
Cited by: 11
Author(s): Jing-Chang Luo, Heng Long, Jian Zhang, Yan Zhao, Li Sun
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-2632-3

Comparative genomics reveals Cyclospora cayetanensis possesses coccidia-like metabolism and invasion components but unique surface antigens
Cited by: 41
Author(s): Shiyou Liu, Lin Wang, Huajun Zheng, Zhixiao Xu, Dawn M. Roellig, Na Li, Michael Frace, Kevin Tang, Michael J. Arrowood, Delynn M. Moss, Longxian Zhang, Yaoyu Feng, Lihua Xiao
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms22179651

Genome-Wide Identification and Analysis of the Metallothionein Genes in Oryza Genus
Cited by: 6
Author(s): Ming Huei Cheng, Huanran Yuan, Ruihua Wang, Jianing Zou, Ting Liang, Fang Yang, Shaoqing Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fcimb.2019.00183

A First Study of the Virulence Potential of a Bacillus subtilis Isolate From Deep-Sea Hydrothermal Vent
Cited by: 32
Author(s): Hanjie Gu, Qinglei Sun, Jing-Chang Luo, Jian Zhang, Li Sun
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2148-9-209

Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice
Cited by: 74
Author(s): Thomas Thiel, Andreas Graner, Robbie Waugh, Ivo Große, Timothy J. Close, Nils Stein
Software Mentions: 1
Published: almost 18 years ago

10.3389/fcimb.2019.00370

Characterization of the Genome Feature and Toxic Capacity of a Bacillus wiedmannii Isolate From the Hydrothermal Field in Okinawa Trough
Cited by: 11
Author(s): Yan Zhao, Chen Chen, Hanjie Gu, Jian Zhang, Li Sun
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2018.00373

pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System
Cited by: 8
Author(s): Agnieszka Wróbel, Claudio Ottoni, Jack C. Leo, Dirk Linke
Software Mentions: 1
Published: almost 8 years ago

10.3389/fncom.2017.00037

Examining Brain Morphometry Associated with Self-Esteem in Young Adults Using Multilevel-ROI-Features-Based Classification Method
Cited by: 2
Author(s): Bo Peng, Jieru Lu, Aditya Saxena, Zhengxin Zhou, Tao Zhang, Suhong Wang, Yakang Dai
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-62836-9

Vermamoeba vermiformis CDC-19 draft genome sequence reveals considerable gene trafficking including with candidate phyla radiation and giant viruses
Cited by: 18
Author(s): Nisrine Chelkha, Issam Hasni, Amina Cherif Louazani, Anthony Levasseur, Bernard La Scola, Philippe Colson
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.550677

Identification and Expression Analysis of the CsMYB Gene Family in Root Knot Nematode-Resistant and Susceptible Cucumbers
Cited by: 9
Author(s): Chunyan Cheng, Qingrong Li, Xing Wang, Ying Li, Chuntao Qian, Ji Li, Qunfeng Lou, Molly M. Jahn, Jinfeng Chen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-018-5154-3

Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai
Cited by: 14
Author(s): Jingxin Zhang, John Hu, Huolin Shen, Yucheng Zhang, Dan Sun, Xiaoming Pu, Qiyun Yang, Qiurong Fan, Birun Lin
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-017-3572-2

The genetic architecture of low-temperature adaptation in the wine yeast Saccharomyces cerevisiae
Cited by: 42
Author(s): Estéfani García‐Ríos, Miguel Morard, Leopold Parts, Gianni Liti, José Manuel Guillamón
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-14-750

Heterogeneity in the entire genome for three genotypes of peach [Prunus persica (L.) Batsch] as distinguished from sequence analysis of genomic variants
Cited by: 19
Author(s): Jonathan Fresnedo-Ramírez, Pedro J. Martínez-García, Dan E. Parfitt, Carlos H. Crisosto, Thomas M. Gradziel
Software Mentions: 1
Published: almost 14 years ago

10.3389/fgene.2014.00163

Evolution of genomic structural variation and genomic architecture in the adaptive radiations of African cichlid fishes
Cited by: 22
Author(s): Shaohua Fan, Axel Meyer
Software Mentions: 1
Published: over 12 years ago

10.3389/fgene.2019.01288

N6-Methyladenine DNA Modification in the Woodland Strawberry (Fragaria vesca) Genome Reveals a Positive Relationship With Gene Transcription
Cited by: 12
Author(s): Shuang Xie, Jian-Feng Xing, Xiaoming Zhang, Zhaoyu Liu, Meiwei Luan, Jie Zhu, Ling Peng, Chuan-Le Xiao, Xiqiang Song, Jun Zheng, Ying Chen
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2020.00729

Characteristics and Mutational Hotspots of Plastomes in Debregeasia (Urticaceae)
Cited by: 15
Author(s): Ruonan Wang, Richard I. Milne, Xin Du, Jie Liu, Zeng-Yuan Wu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-63987-5

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing
Cited by: 11
Author(s): Marie‐Alice Fraiture, Bert Bogaerts, Raf Winand, Marie Deckers, Nina Papazova, Kevin Vanneste, Sigrid C. J. De Keersmaecker, Nancy Roosens
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.732812

Genome-Wide Analysis of the HSP20 Gene Family and Expression Patterns of HSP20 Genes in Response to Abiotic Stresses in Cynodon transvaalensis
Cited by: 11
Author(s): Fengchao Cui, Geli Taier, Xiangfeng Wang, Kehua Wang
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-64746-2

Genome-wide Identification and Characterization of Heat Shock Protein Family Reveals Role in Development and Stress Conditions in Triticum aestivum L.
Cited by: 38
Author(s): Ashish Kumar, Saloni Sharma, Venkatesh Chunduri, Amandeep Kaur, Satinder Kaur, Nikhil Malhotra, Aman Kumar, Payal Kapoor, Anita Kumari, Jaspreet Kaur, Humira Sonah, Monika Garg
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-65001-4

Genome-wide Analysis of Four Enterobacter cloacae complex type strains: Insights into Virulence and Niche Adaptation
Cited by: 13
Author(s): Areeqa Mustafa, Muhammad Ibrahim, Muhammad Rasheed, Sumaira Kanwal, Annam Hussain, Asma Sami, Ahmed Raza, Bao‐Ku Zhu
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-65228-1

Genome Comparison Identifies Different Bacillus Species in a Bast Fibre-Retting Bacterial Consortium and Provides Insights into Pectin Degrading Genes
Cited by: 20
Author(s): Subhojit Datta, Dipnarayan Saha, Lipi Chattopadhyay, B. Majumdar
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-020-07264-9

New insights into the evolution and functional divergence of the CIPK gene family in Saccharum
Cited by: 21
Author(s): Weihua Su, Yongjuan Ren, Dongjiao Wang, Long Huang, Xueqin Fu, Hui Ling, Yachun Su, Ning Huang, Hanchen Tang, Liping Xu, Youxiong Que
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.630292

Genome-Wide Identification of NAC Transcription Factors and Their Functional Prediction of Abiotic Stress Response in Peanut
Cited by: 17
Author(s): Pengxiang Li, Zhenying Peng, Pingli Xu, Guiying Tang, Changle Ma, Jieqiong Zhu, Lei Shan, Shubo Wan
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-2368-0

De novo transcriptome analyses of host-fungal interactions in oil palm (Elaeis guineensis Jacq.)
Cited by: 66
Author(s): Chai Ling Ho, Yung-Chie Tan, Keat Ai Yeoh, Ahmad Kamal Ghazali, Wai Yan Yee, Chee Choong Hoh
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-13-593

A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping
Cited by: 111
Author(s): Patrick Ollitrault, Javier Terol, Chunxian Chen, Claire T. Federici, Samia Lotfy, Isabelle Hippolyte, Frédérique Ollitrault, Aurélie Bérard, Aurélie Chauveau, José Cuenca, Gilles Costantino, A.Yildiz Kacar, Lisa Mu, Andrés García-Lor, Yann Froelicher, Pablo Aleza, Anne Boland, Claire Billot, Luís Navarro, François Luro, Mikeal L. Roose, Frederick G. Gmitter, Manuel Talón, Dominique Brunel
Software Mentions: 1
Published: almost 15 years ago

10.3390/ijms22189862

Identification of FadT as a Novel Quorum Quenching Enzyme for the Degradation of Diffusible Signal Factor in Cupriavidus pinatubonensis Strain HN-2
Cited by: 5
Author(s): Xudan Xu, Yongsheng Tian, Wenping Zhang, Tianxing Zhou, Xin Zhou, Weigang Dai, Shaohua Chen
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.00737

A Survey of Copy Number Variation in the Porcine Genome Detected From Whole-Genome Sequence
Cited by: 16
Author(s): Brittney N Keel, Dan Nonneman, A. K. Lindholm‐Perry, W. T. Oliver, G. A. Rohrer
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-017-4298-x

Genome-wide analysis of the Solanum tuberosum (potato) trehalose-6-phosphate synthase (TPS) gene family: evolution and differential expression during development and stress
Cited by: 33
Author(s): Yingchun Xu, Yanjie Wang, Neil S. Mattson, Yang Liu, Qijiang Jin
Software Mentions: 1
Published: almost 9 years ago

10.3389/fgene.2019.01276

Genome-Wide Identification, Characterization, and Transcript Analysis of the TCP Transcription Factors in Vitis vinifera
Cited by: 23
Author(s): Songtao Jiu, Yan Xu, Jiyuan Wang, Lei Wang, Shiping Wang, Chao Ma, Le Guan, Muhammad Abdullah, Maoxiang Zhao, Wenping Xu, Wenxue Ma, Caixi Zhang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2020.570156

Genome-Wide Identification and Characterization of the bHLH Transcription Factor Family in Pepper (Capsicum annuum L.)
Cited by: 22
Author(s): Zhishuo Zhang, Juan Chen, Chengliang Liang, Feng Liu, Xilin Hou, Xuexiao Zou
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2018.00281

Genome Wide Identification of Novel Long Non-coding RNAs and Their Potential Associations With Milk Proteins in Chinese Holstein Cows
Cited by: 23
Author(s): Wentao Cai, Cong Li, Shuli Liu, Chixing Zhou, Hongwei Yin, Jiuzhou Song, Qin Zhang, Shengli Zhang
Software Mentions: 1
Published: about 8 years ago

10.3389/fgene.2018.00690

Target of Rapamycin (TOR) Regulates the Expression of lncRNAs in Response to Abiotic Stresses in Cotton
Cited by: 19
Author(s): Yun Song, Linxuan Li, Zhaoen Yang, Ge Zhao, Xueyan Zhang, Lingling Wang, Lei Zheng, Fei Zhuo, Huan Yin, Xiaoyang Ge, Chaojun Zhang, Zuoren Yang, Maozhi Ren
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-017-3791-6

A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency
Cited by: 219
Author(s): Kieron D. Edwards, Noe Fernandez‐Pozo, Katherine E Drake-Stowe, Matt Humphry, Andrew Evans, Aureliano Bombarely, F H Allen, Rachel Hurst, Ben White, Sheri P. Kernodle, Jennifer R. Bromley, Juan Pablo Sanchez-Tamburrino, Ramsey S. Lewis, Lukas A. Mueller
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2012.00299

Identifying putative breast cancer-associated long intergenic non-coding RNA loci by high density SNP array analysis
Cited by: 6
Author(s): Zhengyu Jiang, Yan Zhou, Karthik Devarajan, Carolyn Slater, Mary B. Daly, Xiaowei Chen
Software Mentions: 1
Published: almost 15 years ago

10.3389/fgene.2021.538733

Genome-Wide Analysis of Dof Genes and Their Response to Abiotic Stress in Rose (Rosa chinensis)
Cited by: 10
Author(s): Hong Nan, Richard A. Ludlow, Min Lü, Hongyu An
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.00822

Genomics and Virulence of Fonsecaea pugnacius, Agent of Disseminated Chromoblastomycosis
Cited by: 5
Author(s): Amanda Bombassaro, Gabriela Xavier Schneider, Flávia F. Costa, Aniele Carolina Ribas Leão, Bruna da Silva Soley, Fernanda Medeiros, Nickolas M da Silva, Bruna Jacomel Favoreto de Souza Lima, Raffael Júnio Araújo de Castro, Anamélia Lorenzetti Bocca, Valter A. Baura, Eduardo Balsanelli, Vânia C. S. Pankievicz, Nyvia Milicio Coblinski Hrysay, Rosana Hermínia Scola, Leandro Ferreira Moreno, Conceição M. P. S. de Azevedo, Emanuel Maltempi de Souza, Renata Rodrigues Gomes, Sybren de Hoog, Vânia Aparecida Vicente
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2020.00086

Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.)
Cited by: 14
Author(s): D.S. Kishor, Jeonghwan Seo, Joong Hyoun Chin, Hee‐Jong Koh
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2021.660428

A Population-Specific Major Allele Reference Genome From The United Arab Emirates Population
Cited by: 9
Author(s): Gihan Daw Elbait, Andreas Henschel, Guan K. Tay, Habiba S. Al Safar
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.658148

Mungbean DIRIGENT Gene Subfamilies and Their Expression Profiles Under Salt and Drought Stresses
Cited by: 5
Author(s): Wenying Xu, Tong Liu, Huiying Zhang, Hong Zhu
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2019.00980

Identification and Analysis of the GASR Gene Family in Common Wheat (Triticum aestivum L.) and Characterization of TaGASR34, a Gene Associated With Seed Dormancy and Germination
Cited by: 26
Author(s): Xinran Cheng, Shengxing Wang, Dongmei Xu, Liyan Xue, Xinyu Li, Weiwei Xiao, Junhui Cao, Hao Jiang, Xiaoyu Min, Jianfeng Wang, Haiping Zhang, Cheng Chang, Jie Lu, Chunyan Ma
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-017-4421-z

A genetic linkage map of Pleurotus tuoliensis integrated with physical mapping of the de novo sequenced genome and the mating type loci
Cited by: 21
Author(s): Wei Gao, Jian Qu, Jinxia Zhang, A.S.M. Sonnenberg, Qiang Chen, Yan Zhang, Chenyang Huang
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12862-020-1582-1

The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome
Cited by: 38
Author(s): Shenglong Kan, Tingting Shen, Ping Gong, Jin-Hua Ran, Xiaoquan Wang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-14-705

De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba
Cited by: 36
Author(s): Susana Torales, Máximo Rivarola, María Florencia Pomponio, Sergio González, Cintia V. Acuña, Paula Fernández, D. López Lauenstein, Aníbal Ramón Verga, H. Esteban Hopp, Norma Paniego, Susana N. Marcucci Poltri
Software Mentions: 1
Published: almost 14 years ago

10.3389/fgene.2020.609184

Genome-Wide Characterization of the HSP20 Gene Family Identifies Potential Members Involved in Temperature Stress Response in Apple
Cited by: 22
Author(s): Feng Yao, Chunhui Song, Hongtao Wang, Shangwei Song, Jian Jiao, Miaomiao Wang, Xianbo Zheng, Tuanhui Bai
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-67957-9

Genome-wide identification, and characterization of the CDPK gene family reveal their involvement in abiotic stress response in Fragaria x ananassa
Cited by: 31
Author(s): Rosane Lopes Crizel, Ellen Cristina Perin, Isabel Lopes Vighi, Rafael Woloski, Amilton Seixas, Luciano da Silva Pinto, César Valmor Rombaldi, Vanessa Galli
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-016-3393-8

Integrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc.] and their syntenic relationships among closely related legumes
Cited by: 39
Author(s): Wai Kuan Ho, Hui Hui Chai, Presidor Kendabie, Nariman Salih Ahmad, Jaeyres Jani, Festo Massawe, Andrzej Kilian, Sean Mayes
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2014.00183

YouGenMap: a web platform for dynamic multi-comparative mapping and visualization of genetic maps
Cited by: 0
Author(s): Keith Batesole, Kokulapalan Wimalanathan, Lin Liu, Fan Zhang, Craig S. Echt, Chun Liang
Software Mentions: 1
Published: over 12 years ago

10.1186/s12862-017-1056-2

Myosin repertoire expansion coincides with eukaryotic diversification in the Mesoproterozoic era
Cited by: 49
Author(s): Martin Kollmar, Stefanie Mühlhausen
Software Mentions: 1
Published: about 9 years ago

10.1186/s12896-015-0153-9

Ligation-anchored PCR unveils immune repertoire of TCR-beta from whole blood
Cited by: 7
Author(s): Fan Gao, Kai Wang
Software Mentions: 1
Published: over 11 years ago

10.3389/fgene.2019.00487

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation
Cited by: 9
Author(s): Deborah Weighill, David Macaya‐Sanz, Stephen P. DiFazio, Wayne Joubert, Manesh Shah, Jeremy Schmutz, Avinash Sreedasyam, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-016-2773-4

Mapping the sex determination locus in the hāpuku (Polyprion oxygeneios) using ddRAD sequencing
Cited by: 44
Author(s): Jeremy K. Brown, John B. Taggart, Michaël Bekaert, Stefanie Wehner, Christos Palaiokostas, Alvin N. Setiawan, Jane E. Symonds, David J. Penman
Software Mentions: 1
Published: over 10 years ago

10.3389/fgene.2021.737194

StAR-Related Lipid Transfer (START) Domains Across the Rice Pangenome Reveal How Ontogeny Recapitulated Selection Pressures During Rice Domestication
Cited by: 2
Author(s): Sanjeet Kumar Mahtha, Ravi Kiran Purama, Gitanjali Yadav
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.590535

Genome-Wide Identification and Comparative Analysis of ARF Family Genes in Three Apiaceae Species
Cited by: 6
Author(s): Qiaoying Pei, Nan Li, Qing Yang, Tong Wu, Shuyan Feng, Xuehuan Feng, Zange Jing, Rong Zhou, Ke Gong, Tong Yu, Zhen Wang, Xiaoming Song
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-6262-4

Genome sequence of the model rice variety KitaakeX
Cited by: 49
Author(s): Rashmi Jain, Jerry Jenkins, Shengqiang Shu, Mawsheng Chern, Joel Martin, Dario Copetti, Phat Q. Duong, Nikki T. Pham, David Kudrna, Jayson Talag, Wendy Schackwitz, Anna Lipzen, David Dilworth, Diane Bauer, Jane Grimwood, Catherine R. Nelson, Xing Feng, Weibo Xie, Kerrie Barry, Rod A. Wing, Jeremy Schmutz, Guotian Li, Pamela C. Ronald
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms221810056

Identification and Characterization of Novel circRNAs Involved in Muscle Growth of Blunt Snout Bream (Megalobrama amblycephala)
Cited by: 3
Author(s): Lifang Liu, Yulong Chen, Jinghan Diao, Le Luo, Zexia Gao
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2021.696300

Identification and Expression Analyses of Invertase Genes in Moso Bamboo Reveal Their Potential Drought Stress Functions
Cited by: 4
Author(s): Chenglei Zhu, Kebin Yang, Guangzhu Li, Ying Liu, Zhimin Gao
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-70061-7

Genome-wide identification and characterization of DCL, AGO and RDR gene families in Saccharum spontaneum
Cited by: 17
Author(s): Dongli Cui, Jian‐Yu Meng, Xiaoyan Ren, Jingjing Yue, Hua‐Ying Fu, Mei-Ting Huang, Qingqi Zhang, San‐Ji Gao
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-15-500

Genome sequencing of two Neorhizobium galegae strains reveals a noeT gene responsible for the unusual acetylation of the nodulation factors
Cited by: 27
Author(s): Janina Österman, Joanne P. Marsh, Pia Laine, Zhen Zeng, Edward Alatalo, John T. Sullivan, J. Peter W. Young, Jane Thomas‐Oates, Lars Paulín, Kristina Lindström
Software Mentions: 1
Published: over 12 years ago

10.3389/fgene.2021.584886

Genome-Wide Characterization of HSP90 Gene Family in Cucumber and Their Potential Roles in Response to Abiotic and Biotic Stresses
Cited by: 9
Author(s): Kaijing Zhang, Shuaishuai He, Sui YiHu, Qinghai Gao, Shuangshuang Jia, Xingrong Lu, Jia Li
Software Mentions: 1
Published: over 5 years ago