10.1038/s41598-020-70061-7

Genome-wide identification and characterization of DCL, AGO and RDR gene families in Saccharum spontaneum
Cited by: 17
Author(s): Dongli Cui, Jian‐Yu Meng, Xiaoyan Ren, Jingjing Yue, Hua‐Ying Fu, Mei-Ting Huang, Qingqi Zhang, San‐Ji Gao
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-13-570

Identifying breast cancer risk loci by global differential allele-specific expression (DASE) analysis in mammary epithelial transcriptome
Cited by: 18
Author(s): Chuan Gao, Karthik Devarajan, Yan Zhou, Carolyn Slater, Mary B. Daly, Xiaowei Chen
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-11-667

Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes
Cited by: 144
Author(s): John H. E. Nash, André Villegas, Andrew M. Kropinski, Renán Aguilar-Valenzuela, Paulina Konczy, Mariola Mascarenhas, Kim Ziebell, Alfredo G. Torres, Mohamed A. Karmali, Brian K. Coombes
Software Mentions: 1
Published: almost 16 years ago

10.1038/s41598-020-69944-6

Characterization of a SPM-1 metallo-beta-lactamase-producing Pseudomonas aeruginosa by comparative genomics and phenotypic analysis
Cited by: 7
Author(s): Ana Paula Barbosa do Nascimento, Fernando Medeiros Filho, Heidi Pauer, L. Caetano M. Antunes, Hério Sousa, Hermes Senger, Rodolpho Mattos Albano, M. Tadeu dos Santos, Ana Paula D’Alincourt Carvalho-Assef, Fabrício Silva
Software Mentions: 1
Published: about 6 years ago

10.1128/JVI.02079-19

Kaposi’s Sarcoma-Associated Herpesvirus Lytic Replication Is Independent of Anaphase-Promoting Complex Activity
Cited by: 1
Author(s): Endrit Elbasani, Silvia Gramolelli, Thomas Guenther, Ildar Gabaev, Adam Grundhoff, Päivi M. Ojala
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.677654

Revealing Microbiome Structure and Assembly Process in Three Rhizocompartments of Achyranthes bidentata Under Continuous Monoculture Regimes
Cited by: 3
Author(s): Juanying Wang, Hongmiao Wu, Linkun Wu, Ye Liu, Puleng Letuma, Xianjin Qin, Ting Chen, Christopher Rensing, Shan Lin, Wenxiong Lin
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-021-07809-6

Comparative insights into genome signatures of ferric iron oxide- and anode-stimulated Desulfuromonas spp. strains
Cited by: 7
Author(s): Yong Guo, Tomo Aoyagi, Tomoyuki Hori
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.00137

The DNA Methylome of the Hyperthermoacidophilic Crenarchaeon Sulfolobus acidocaldarius
Cited by: 23
Author(s): Mohea Couturier, Ann-Christin Lindås
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2016.01756

Genome Sequence of Pseudomonas koreensis CRS05-R5, an Antagonistic Bacterium Isolated from Rice Paddy Field
Cited by: 13
Author(s): Haiyan Lin, Shikai Hu, Ruifang Liu, Ping Chen, Changwei Ge, Bo Zhu, Longbiao Guo
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2019.02194

Genomic Characterization of the Periwinkle Leaf Yellowing (PLY) Phytoplasmas in Taiwan
Cited by: 19
Author(s): Shu-Ting Cho, Chan‐Pin Lin, Chih-Horng Kuo
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-70404-4

A novel strain of acetic acid bacteria Gluconobacter oxydans FBFS97 involved in riboflavin production
Cited by: 13
Author(s): Abeer Essam Noman, Naif S. Al-Barha, Abdul-Aziz M. Sharaf, Qais Ali Al‐Maqtari, Amani Mohedein, Hammad Hamed Hammad Mohammed, Fusheng Chen
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2019.03129

A Resequencing-Based Ultradense Genetic Map of Hericium erinaceus for Anchoring Genome Sequences and Identifying Genetic Loci Associated With Monokaryon Growth
Cited by: 7
Author(s): Wànkuí Gǒng, Conghua Xie, Yingjun Zhou, Zuohua Zhu, Yahui Wang, Yu Peng
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-70634-6

Comparative analysis, distribution, and characterization of microsatellites in Orf virus genome
Cited by: 5
Author(s): Basanta Pravas Sahu, Prativa Majee, Rajinder Singh, Anjan Kumar Sahoo, Debasis Nayak
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.688981

Correlation: Between Autochthonous Microbial Diversity and Volatile Metabolites During the Fermentation of Nongxiang Daqu
Cited by: 20
Author(s): Yu-Ke Deng, Dan Huang, Bao-Lin Han, Xinqian Ning, Yu Dong, Huixiang Guo, Yufang Zou, Wen Jing, Huibo Luo
Software Mentions: 1
Published: about 5 years ago

10.3389/fmolb.2020.00187

Are Antisense Proteins in Prokaryotes Functional?
Cited by: 19
Author(s): Zachary Ardern, Klaus Neuhaus, Stephen W. Scherer
Software Mentions: 1
Published: about 6 years ago

10.1128/AEM.02089-18

Periodic and Spatial Spreading of Alkanes and <i>Alcanivorax</i> Bacteria in Deep Waters of the Mariana Trench
Cited by: 15
Author(s): Wen Li Li, Junzhe Huang, Peiwei Zhang, Guojie Cui, Zhanfei Wei, Yu-Zhi Wu, Zhaoming Gao, Zhuang Han, Wang Yong
Software Mentions: 1
Published: over 7 years ago

10.1128/AEM.02655-17

Transferable Plasmid-Borne <i>mcr-1</i> in a Colistin-Resistant Shigella flexneri Isolate
Cited by: 13
Author(s): Beibei Liang, Adam P. Roberts, Xuebin Xu, Chaojie Yang, Xiaoxia Yang, Jinyan Wang, Shengjie Yi, Yongrui Li, Qiuxia Ma, Fuli Wu, Shaofu Qiu, Hongbin Song
Software Mentions: 1
Published: over 8 years ago

10.3389/fnana.2020.00023

Antennal Lobe Atlas of an Emerging Corn Pest, Athetis dissimilis
Cited by: 2
Author(s): Jun-Feng Dong, Nan-Ji Jiang, Xincheng Zhao, Rui Tang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-1168

NextGen sequencing reveals short double crossovers contribute disproportionately to genetic diversity in Toxoplasma gondii
Cited by: 15
Author(s): Asis Khan, Jahangheer Shaik, Michael S. Behnke, Qiuling Wang, J. P. Dubey, Hernán Lorenzi, James W. Ajioka, Benjamin M. Rosenthal, L. David Sibley
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-14-639

Extensively duplicated and transcriptionally active recent lateral gene transfer from a bacterial Wolbachia endosymbiont to its host filarial nematode Brugia malayi
Cited by: 38
Author(s): Panagiotis Ioannidis, Kelly L. Johnston, David R. Riley, Nikhil Kumar, James R. White, Karen T Olarte, Sandra Ott, Luke J. Tallon, Jeremy M. Foster, Mark J. Taylor, Julie C. Dunning Hotopp
Software Mentions: 1
Published: about 13 years ago

10.1186/s12915-020-00830-3

Genome-wide pQTL analysis of protein expression regulatory networks in the human liver
Cited by: 42
Author(s): Bing He, Jian Shi, Xinwen Wang, Hui Jiang, Hao Zhu
Software Mentions: 1
Published: about 6 years ago

10.3389/fneur.2021.635419

Anti-aquaporin 4 IgG Is Not Associated With Any Clinical Disease Characteristics in Neuromyelitis Optica Spectrum Disorder
Cited by: 10
Author(s): Oliver Schmetzer, Elisa Lakin, Ben Roediger, Ankelien Duchow, Susanna Asseyer, Friedemann Paul, Nadja Siebert
Software Mentions: 1
Published: over 5 years ago

10.3389/fneur.2019.01105

A Distance-Based Neurorehabilitation Evaluation Method Using Linear SVM and Resting-State fMRI
Cited by: 3
Author(s): Yunxiang Ge, Yu Pan, Qiong Wu, Wei Dou
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-020-75751-w

Intestinal miRNAs regulated in response to dietary lipids
Cited by: 11
Author(s): Judit Gil-Zamorano, João Tomé‐Carneiro, María-Carmen López de Las Hazas, Lorena Del Pozo-Acebo, M. Carmen Crespo, Diego Gómez-Coronado, Luis A Chapado, Emílio Herrera, María-Jesús Latasa, María Belén Ruiz-Roso, Mónica Castro-Camarero, Olivier Briand, Alberto Dávalos
Software Mentions: 1
Published: almost 6 years ago

10.1007/s11060-020-03631-4

Gamma Knife Radiosurgery does not alter the copy number aberration profile in sporadic vestibular schwannoma
Cited by: 1
Author(s): Aril Løge Håvik, Ove Bruland, Dhanushan Dhayalan, Morten Lund‐Johansen, Per-Morten Knappskog
Software Mentions: 1
Published: about 6 years ago

10.3389/fnins.2014.00325

GEMINs: potential therapeutic targets for spinal muscular atrophy?
Cited by: 14
Author(s): Rebecca Borg, Ruben J. Cauchi
Software Mentions: 1
Published: about 12 years ago

10.1186/s12864-015-2090-3

First complete mitochondrial genome of the South American annual fish Austrolebias charrua (Cyprinodontiformes: Rivulidae): peculiar features among cyprinodontiforms mitogenomes
Cited by: 5
Author(s): Verónica Gutiérrez, Natalia Rego, Hugo Naya, Graciela García
Software Mentions: 1
Published: almost 11 years ago

10.3389/fnins.2019.01111

Network Representations of Facial and Bodily Expressions: Evidence From Multivariate Connectivity Pattern Classification
Cited by: 3
Author(s): Yin Liang, Baolin Liu, Junzhong Ji, Xianglin Li
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnins.2019.01087

Effects of Chronic Sleep Restriction on the Brain Functional Network, as Revealed by Graph Theory
Cited by: 20
Author(s): Farzad V. Farahani, Magdalena Fąfrowicz, Waldemar Karwowski, Pamela K. Douglas, Aleksandra Domagalik, Ewa Beldzik, Halszka Ogińska, Tadeusz Marek
Software Mentions: 1
Published: about 7 years ago

10.3389/fnut.2021.633738

Effect of a Humanized Diet Profile on Colonization Efficiency and Gut Microbial Diversity in Human Flora-Associated Mice
Cited by: 4
Author(s): Sashuang Dong, Benhua Zeng, Ling Hu, Yuling Zhang, Jiaqi Xiong, Jing Deng, Liyan Huang, Zhenlin Liao, Jie Wang, Hong Wei, Xiang Fang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-5254-0

Homologous recombination changes the context of Cytochrome b transcription in the mitochondrial genome of Silene vulgaris KRA
Cited by: 12
Author(s): Helena Štorchová, James D. Stone, Daniel B. Sloan, Oushadee A. J. Abeyawardana, Karel Müller, Jana Walterová, Marie Pažoutová
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-015-1990-6

Genome-wide systematic characterization of the bZIP transcriptional factor family in tomato (Solanum lycopersicum L.)
Cited by: 96
Author(s): Dayong Li, Fuyou Fu, Huijuan Zhang, Fengming Song
Software Mentions: 1
Published: about 11 years ago

10.1186/s12864-021-07914-6

Comparative genomics of two inbred lines of the potato cyst nematode Globodera rostochiensis reveals disparate effector family-specific diversification patterns
Cited by: 4
Author(s): Joris J.M. van Steenbrugge, Sven van den Elsen, M.H.M. Holterman, M.G. Sterken, Peter Thorpe, A. Goverse, G. Smant, J. Helder
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-13-471

Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production
Cited by: 37
Author(s): Jessica Butler, Nelson D. Young, Muktak Aklujkar, Derek R. Lovley
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12864-018-4613-1

A high-resolution genetic linkage map and QTL fine mapping for growth-related traits and sex in the Yangtze River common carp (Cyprinus carpio haematopterus)
Cited by: 49
Author(s): Xiu Feng, Xin Yu, Bishi Fu, Xinhua Wang, Haiyang Liu, Maolin Pang, Jingou Tong
Software Mentions: 1
Published: over 8 years ago

10.1186/s12915-020-00789-1

Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution
Cited by: 16
Author(s): Dick Roelofs, Arthur Zwaenepoel, Tom Sistermans, Joey Nap, Andries A. Kampfraath, Yves Van de Peer, Jacintha Ellers, Ken Kraaijeveld
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-016-3184-2

Genome-wide investigation and expression analyses of the pentatricopeptide repeat protein gene family in foxtail millet
Cited by: 23
Author(s): Jiaming Liu, Zhao‐Shi Xu, Panpan Lu, Weiwei Li, Ming Chen, Changhong Guo, Yupo Ma
Software Mentions: 1
Published: almost 10 years ago

10.3389/fonc.2014.00202

Ultra-High Density SNParray in Neuroblastoma Molecular Diagnostics
Cited by: 46
Author(s): Inge M. Ambros, C Brunner, Reza Abbasi, Christian Frech, Peter F. Ambros
Software Mentions: 1
Published: about 12 years ago

10.3389/fonc.2020.584095

DNA Copy Number Changes in Diffuse Large B Cell Lymphomas
Cited by: 8
Author(s): Luciano Cascione, Luca Aresu, Michael Baudis, Francesco Bertoni
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-77492-2

Genome skimming and exploration of DNA barcodes for Taiwan endemic cypresses
Cited by: 2
Author(s): Ching‐Yi Wu, Edi Sudianto, Yu-Mei Hung, Bo-Cyun Wang, Chin‐Cheng Huang, Chi-Tsong Chen, Shu‐Miaw Chaw
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2018.00040

Live-Cell Mesothelioma Biobank to Explore Mechanisms of Tumor Progression
Cited by: 14
Author(s): Kathrin Oehl, Jelena Kresoja‐Rakic, Isabelle Opitz, Bart Vrugt, Walter Weder, Rolf A. Stahel, Peter J. Wild, Emanuela Felley‐Bosco
Software Mentions: 1
Published: over 8 years ago

10.3389/fonc.2020.609839

Whole-Exome Sequencing Reveals New Potential Mutations Genes for Primary Mucosa-Associated Lymphoid Tissue Lymphoma Arising From the Kidney
Cited by: 3
Author(s): Shuang Wen, Tianqing Liu, Hongshuo Zhang, Xu Zhou, Huidan Jin, Min Sun, Zhi-Fei Yun, Hong Luo, Ze Ni, Rui Zhao, Bo Fan
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphar.2021.607200

The Species Identification in Traditional Herbal Patent Medicine, Wuhu San, Based on Shotgun Metabarcoding
Cited by: 9
Author(s): Jinxin Liu, Weishan Mu, Mengmeng Shi, Qing Zhao, Weijun Kong, Hongbo Xie, Linchun Shi
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2019.00272

Alcohol Extracts From Ganoderma lucidum Delay the Progress of Alzheimer’s Disease by Regulating DNA Methylation in Rodents
Cited by: 25
Author(s): Guoxiao Lai, Yinrui Guo, Diling Chen, Xiaocui Tang, Ou Shuai, Tianqiao Yong, Dongdong Wang, Chun Xiao, Gailian Zhou, Yizhen Xie, Burton B. Yang, Qingping Wu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-82584-8

Metagenomic analysis of the gut microbiome composition associated with vitamin D supplementation in Taiwanese infants
Cited by: 12
Author(s): Wei‐Te Lei, Kai-Yao Huang, Jhih-Hua Jhong, Chia-Hung Chen, Shun-Long Weng
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.607210

Precise Species Detection in Traditional Herbal Patent Medicine, Qingguo Wan, Using Shotgun Metabarcoding
Cited by: 5
Author(s): Jinxin Liu, Mengmeng Shi, Qing Zhao, Weijun Kong, Weishan Mu, Hongbo Xie, Zhongsi Li, Baoli Li, Linchun Shi
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.607197

Biological Ingredient Analysis of Traditional Herbal Patent Medicine Fuke Desheng Wan Using the Shotgun Metabarcoding Approach
Cited by: 4
Author(s): Hongbo Xie, Qing Zhao, Mengmeng Shi, Weijun Kong, Weishan Mu, Baoli Li, Jingyi Zhao, Chunli Zhao, Jing Jia, Jinxin Liu, Linchun Shi
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-80627-0

Analysis of Fox genes in Schmidtea mediterranea reveals new families and a conserved role of Smed-foxO in controlling cell death
Cited by: 9
Author(s): Eudald Pascual-Carreras, Carlos Herrera-Úbeda, Maria Rosselló, Pablo Coronel-Córdoba, Jordi Garcia‐Fernàndez, Emili Saló, Teresa Adell
Software Mentions: 1
Published: over 5 years ago

10.3390/antibiotics7040101

Fighting Fire with Fire: Phage Potential for the Treatment of E. coli O157 Infection
Cited by: 12
Author(s): Cristina Howard-Varona, Dean Vik, Natalie Solonenko, Yueh Fen Li, M. Consuelo Gazitúa, Lauren Chittick, Jennifer Samiec, Aubrey E. Jensen, Patrick J. Anderson, Adrian Howard-Varona, Anika Kinkhabwala, Stephen T. Abedon, Matthew B. Sullivan
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphys.2020.577237

Acacetin Ameliorates Experimental Colitis in Mice via Inhibiting Macrophage Inflammatory Response and Regulating the Composition of Gut Microbiota
Cited by: 26
Author(s): Junyu Ren, Bei Yue, Hao Wang, Beibei Zhang, Xiaoping Li, Zhilun Yu, Jing Zhang, Yueping Ren, Sridhar Mani, Zhengtao Wang, Wei Dou
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2017.00261

Integrated Analysis of DNA Methylation and mRNA Expression Profiles to Identify Key Genes in Severe Oligozoospermia
Cited by: 18
Author(s): Zhiming Li, Xuan Zhuang, Jinxiong Zeng, Chi-Meng Tzeng
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-021-82857-2

In silico identification of natural products from Traditional Chinese Medicine for cancer immunotherapy
Cited by: 13
Author(s): Chuipu Cai, Qihui Wu, Honghai Hong, Lin He, Zhihong Liu, Yong Gu, Shijie Zhang, Qi Wang, Xiude Fan, Jiansong Fang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2021.655267

Characterization of Japanese Plum (Prunus salicina) PsMYB10 Alleles Reveals Structural Variation and Polymorphisms Correlating With Fruit Skin Color
Cited by: 13
Author(s): Arnau Fiol, Beatriz Ester García-Gómez, Federico Jurado-Ruiz, Konstantinos G. Alexiou, Werner Howad, María José Aranzana
Software Mentions: 1
Published: over 5 years ago

10.1016/j.isci.2020.101241

ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era
Cited by: 49
Author(s): Songtao Gui, L. Yang, Jianbo Li, Jingyun Luo, Xiaokai Xu, Jianyu Yuan, Lu Chen, Wenqiang Li, Xin Yang, Shenshen Wu, Shuyan Li, Yuebin Wang, Yabing Zhu, Qiang Gao, Ning Yang, Jianbing Yan
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2013.00176

Gene divergence of homeologous regions associated with a major seed protein content QTL in soybean
Cited by: 21
Author(s): Puji Lestari, Kyujung Van, Jay Ern Lee, Yang Jae Kang, Suk-Ha Lee
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12864-020-6475-6

Genome-wide survey and expression analysis of calcium-dependent protein kinase (CDPK) in grass Brachypodium distachyon
Cited by: 22
Author(s): Feng Wen, Feng Yan, Zhulong Xiao, Liwen Liang, Tongjian Li, Ming Jia, Xinsheng Liu, Xiaozhu Wu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2020.554158

Postharvest Properties of Ultra-Late Maturing Peach Cultivars and Their Attributions to Melting Flesh (M) Locus: Re-evaluation of M Locus in Association With Flesh Texture
Cited by: 3
Author(s): Ryohei Nakano, Takashi Kawai, Yosuke Fukamatsu, Kagari Akita, Shuichi Watanabe, Takeshi Asano, Daisuke Takata, Mamoru Sato, Fumio Fukuda, Koichiro Ushijima
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2018.00013

Parental Expression Variation of Small RNAs Is Negatively Correlated with Grain Yield Heterosis in a Maize Breeding Population
Cited by: 17
Author(s): Felix Seifert, Alexander Thiemann, Robert Grant-Downton, Susanne Edelmann, Dominika Rybka, Tobias A. Schrag, Matthias Frisch, H. G. Dickinson, Albrecht E. Melchinger, Stefan Scholten
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2021.650109

Identification, Expression, and Interaction Analysis of Ovate Family Proteins in Populus trichocarpa Reveals a Role of PtOFP1 Regulating Drought Stress Response
Cited by: 1
Author(s): Hemeng Wang, Jin‐Gui Chen, Ying Chang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84286-7

Complete genome sequencing of Bacillus sp. TK-2, analysis of its cold evolution adaptability
Cited by: 9
Author(s): Lijun Shen, Xueli Zang, Ke Sun, Huan Chen, Xinying Che, Yansong Sun, Gang Wang, Sitong Zhang, Guang Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2021.719889

Identification and Analysis of GhEXO Gene Family Indicated That GhEXO7_At Promotes Plant Growth and Development Through Brassinosteroid Signaling in Cotton (Gossypium hirsutum L.)
Cited by: 4
Author(s): Shengdong Li, Zhao Liu, Guoquan Chen, Ghulam Qanmber, Lili Lu, Jiaxin Zhang, Shuya Ma, Zuoren Yang, Fuguang Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.00349

Genome-Wide Identification, Evolution, and Expression Analysis of the ATP-Binding Cassette Transporter Gene Family in Brassica rapa
Cited by: 29
Author(s): Chao Yan, Weike Duan, Shanwu Lyu, Ying Liu, Xilin Hou
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-015-2289-3

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas
Cited by: 52
Author(s): Song Cui, Ruth Schmidt, Victor de Jager, D. Krzyżanowska, E. Jongedijk, Katarina Cankar, Jules Beekwilder, Anouk van der Veen, Wietse de Boer, Johannes A. van Veen, Paolina Garbeva
Software Mentions: 1
Published: almost 11 years ago

10.18632/oncotarget.7817

Identification of FGF19 as a prognostic marker and potential driver gene of lung squamous cell carcinomas in Chinese smoking patients
Cited by: 27
Author(s): Qiang Tan, Li Fan, Guan Wang, Weiliang Xia, Ziming Li, Xiaomin Niu, Wei Ji, Hong Ye, Qiang Xu, Qingquan Luo, Jie Zhang, Shun Lü
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-021-84778-6

Structural characterization and duplication modes of pseudogenes in plants
Cited by: 11
Author(s): Flavia Mascagni, Gabriele Usai, Andrea Cavallini, Andrea Porceddu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2020.536530

Identification of Candidate Auxin Response Factors Involved in Pomegranate Seed Coat Development
Cited by: 3
Author(s): Liang Yu, Chunyan Liu, Jiyu Li, Botao Jia, Xiaoxiao Qi, Ray Ming, Gaihua Qin
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-15-354

Whole genome profiling of spontaneous and chemically induced mutations in Toxoplasma gondii
Cited by: 30
Author(s): Andrew Farrell, Bradley I. Coleman, Brian Benenati, Kevin M. Brown, Ira J. Blader, Gábor Marth, Marc–Jan Gubbels
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2021.692628

High-Density Linkage Map Construction and QTL Identification in a Diploid Blueberry Mapping Population
Cited by: 14
Author(s): Xinpeng Qi, Elizabeth L. Ogden, Hamed Bostan, Daniel J. Sargent, J. A. Ward, Jessica Gilbert, Massimo Iorizzo, Lisa J. Rowland
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2016.01600

DArT Markers Effectively Target Gene Space in the Rye Genome
Cited by: 22
Author(s): Piotr Gawroński, Magdalena Pawełkowicz, Katarzyna Tofil, Grzegorz Uszyński, Saida Sharifova, Shivaksh Ahluwalia, Mirosław Tyrka, Maria Wędzony, Andrzej Kilian, Hanna Bolibok-Brągoszewska
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2021.608603

Characterization of Mungbean CONSTANS-LIKE Genes and Functional Analysis of CONSTANS-LIKE 2 in the Regulation of Flowering Time in Arabidopsis
Cited by: 12
Author(s): Chenyang Liu, Qianqian Zhang, Hong Zhu, Chunmei Cai, Shuai Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2015.00162

Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea
Cited by: 91
Author(s): Alice Kujur, Deepak Bajaj, Hari D. Upadhyaya, Shouvik Das, Rajeev Ranjan, Tanima Shree, Maneesha S. Saxena, Saurabh Badoni, Vinod Kumar, Shailesh Tripathi, C L L Gowda, Sunny Sharma, Sube Singh, Akhilesh K. Tyagi, Swarup K. Parida
Software Mentions: 1
Published: over 11 years ago

10.3389/fpls.2017.00162

Comprehensive Analysis of the CDPK-SnRK Superfamily Genes in Chinese Cabbage and Its Evolutionary Implications in Plants
Cited by: 21
Author(s): Peng Wu, Wenli Wang, Weike Duan, Ying Li, Xilin Hou
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2014.00098

The genome sequence and effector complement of the flax rust pathogen Melampsora lini
Cited by: 104
Author(s): Adnane Nemri, Diane G. O. Saunders, Claire L. Anderson, Narayana M. Upadhyaya, Joe Win, Gregory J. Lawrence, David A. Jones, Sophien Kamoun, Jeffrey G. Ellis, Peter N. Dodds
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2019.00592

Comparison Between Flat and Round Peaches, Genomic Evidences of Heterozygosity Events
Cited by: 12
Author(s): Qiuping Tan, Xiao Liu, Hongjiang Gao, Wei Xiao, Xiude Chen, Xiling Fu, Ling Li, Dongmei Li, Dongsheng Gao
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-15-1163

Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants
Cited by: 48
Author(s): Fei Liu, Yezi Zhu, Yong Sub Yi, Na Lü, Baoli Zhu, Yongfei Hu
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-13-639

Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis
Cited by: 80
Author(s): Filomena Giorno, Gea Guerriero, Sanja Baric, Celestina Mariani
Software Mentions: 1
Published: almost 15 years ago

10.3389/fpls.2016.01820

Characterization and Functional Analysis of Calmodulin and Calmodulin-Like Genes in Fragaria vesca
Cited by: 26
Author(s): Kai Zhang, Dingyi Yue, Wei Wei, Huanming Yang, Jiahao Feng, Zhirong Zou
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2164-11-599

Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex
Cited by: 55
Author(s): Karlene H. Lynch, Paul Stothard, Jonathan J. Dennis
Software Mentions: 1
Published: almost 16 years ago

10.18632/oncotarget.8002

Determination of somatic oncogenic mutations linked to target-based therapies using MassARRAY technology
Cited by: 10
Author(s): Maider Ibarrola‐Villava, Tania Fleitas, Marta J. Llorca-Cardeñosa, Cristina Mongort, Elisa Alonso, Samuel Navarro, Octavio Burgués, Ana Vivancos, Juan Miguel Cejalvo, Jose Alejandro Pérez-Fidalgo, Susana Roselló, Gloría Ribas, Andrés Cervantes
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2020.00128

Genome-Wide Identification of the MdKNOX Gene Family and Characterization of Its Transcriptional Regulation in Malus domestica
Cited by: 21
Author(s): Peng Jia, Chenguang Zhang, Libo Xing, Youmei Li, Kamran Shah, Xia Zuo, Dong Zhang, Na An, Mingyu Han, Xiaolin Ren
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2020.01076

Illegitimate Recombination Between Homeologous Genes in Wheat Genome
Cited by: 9
Author(s): Chao Liu, Jinpeng Wang, Pengchuan Sun, Jigao Yu, Fanbo Meng, Zhikang Zhang, He Guo, Chendan Wei, Xinyu Li, Shaoqi Shen, Xiyin Wang
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-021-85754-w

Genome-wide characterization and analysis of bHLH transcription factors related to anthocyanin biosynthesis in spine grapes (Vitis davidii)
Cited by: 24
Author(s): Ming Li, Lina Sun, Hongcang Gu, Dawei Cheng, Xiaoxia Guo, Rui Chen, Zhiyong Wu, Jianfu Jiang, Xiucai Fan, Jinyong Chen
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2021.639431

Mapping and Analysis of a Novel Genic Male Sterility Gene in Watermelon (Citrullus lanatus)
Cited by: 5
Author(s): Wei Dong, Dewei Wu, Yan Chen, Defeng Wu
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2016.01938

The tRNA-Derived Small RNAs Regulate Gene Expression through Triggering Sequence-Specific Degradation of Target Transcripts in the Oomycete Pathogen Phytophthora sojae
Cited by: 33
Author(s): Qinhu Wang, Tingting Li, Ke Xu, Wei Zhang, Xiaolong Wang, Junli Quan, Weibo Jin, Meixiang Zhang, Guangjin Fan, Ming-Bo Wang, Weixing Shan
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2016.00980

Genetic Linkage Map Construction and QTL Analysis of Two Interspecific Reproductive Isolation Traits in Sponge Gourd
Cited by: 18
Author(s): Haibin Wu, Xiaoli He, Hao Gong, Shuhong Luo, Mingzhu Li, Junqiu Chen, Changyuan Zhang, Ting Yu, Weiqiang Huang, Jianxun Luo
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2018.00856

Comparative Genomics, Whole-Genome Re-sequencing and Expression Profile Analysis of Nucleobase:Cation Symporter 2 (NCS2) Genes in Maize
Cited by: 5
Author(s): Wenxiang Chai, Xiaojian Peng, Bin Liu, Jing Wang, Zhan Zhi-Ming, Yin Liu, Kai Zhao, Beijiu Cheng, Weina Si, Haiyang Jiang
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2018.00047

Asymmetric Evolution and Expansion of the NAC Transcription Factor in Polyploidized Cotton
Cited by: 21
Author(s): Kai Fan, Feng Li, Jiahuan Chen, Zhaowei Li, Weiwei Lin, Size Cai, Jianping Liu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-019-5494-7

Comparison of Trihelix transcription factors between wheat and Brachypodium distachyon at genome-wide
Cited by: 18
Author(s): Chengwei Wang, Yu Wang, Qi Pan, Shoukun Chen, Cui-Zhu Feng, Jiangbo Hai, Haifeng Li
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-017-3762-y

Discrimination of candidate subgenome-specific loci by linkage map construction with an S1 population of octoploid strawberry (Fragaria × ananassa)
Cited by: 14
Author(s): Soichiro Nagano, Kenta Shirasawa, Hideki Hirakawa, Fumi Maeda, M. Ishikawa, Sachiko Isobe
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2015.00736

Identification, isolation, and expression analysis of heat shock transcription factors in the diploid woodland strawberry Fragaria vesca
Cited by: 46
Author(s): Huanming Yang, Yujun Han, Wei Wei, Yajuan Li, Kai Zhang, Yurong Gao, Fengli Zhao, Jiahao Feng
Software Mentions: 1
Published: about 11 years ago

10.3389/fpls.2019.00513

Whole Genome Sequencing and Comparative Genomic Analysis Reveal Allelic Variations Unique to a Purple Colored Rice Landrace (Oryza sativa ssp. indica cv. Purpleputtu)
Cited by: 21
Author(s): V. B. Reddy Lachagari, Ravi Gupta, Sivarama Prasad Lekkala, Lakshmi Mahadevan, Boney Kuriakose, Navajeet Chakravartty, A. V. S. K. Mohan Katta, Sam Santhosh, A. R. Reddy, George Thomas
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-020-06943-x

Chronological set of E. coli O157:H7 bovine strains establishes a role for repeat sequences and mobile genetic elements in genome diversification
Cited by: 3
Author(s): Eliot Stanton, Taylor A. Wahlig, Dong-Jin Park, Charles W. Kaspar
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-15-677

Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints
Cited by: 89
Author(s): Dawei Dong, Filipe Pereira, Steven P. Barrett, Jill E. Kolesar, Kajia Cao, Joana Damas, Liliya A. Yatsunyk, F. Brad Johnson, Brett A. Kaufman
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-11-636

Comparative physical maps derived from BAC end sequences of tilapia (Oreochromis niloticus)
Cited by: 26
Author(s): Lucile Soler, Matthew A. Conte, Takayuki Katagiri, Aimée E. Howe, Bo-Young Lee, Chris T. Amemiya, Andrew B. Stuart, Carole Dossat, Julie Poulain, Jeremy Johnson, Federica Di Palma, Kerstin Lindblad‐Toh, Jean‐François Baroiller, Hélèna D'Cotta, Catherine Ozouf−Costaz, Thomas D. Kocher
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-016-2433-8

Complete genome of Staphylococcus aureus Tager 104 provides evidence of its relation to modern systemic hospital-acquired strains
Cited by: 6
Author(s): Richard W. Davis, Andrew Brannen, M. Jahangir Hossain, Scott Monsma, Paul E. Bock, Matthias Nahrendorf, David A. Mead, Michael J. Lodes, Mark R. Liles, Peter Panizzi
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2019.00711

Genetic Analysis and Transfer of Favorable Exotic QTL Alleles for Grain Yield Across D Genome Using Two Advanced Backcross Wheat Populations
Cited by: 5
Author(s): Ali Ahmad Naz, Said Dadshani, Agim Ballvora, Klaus Pillen, Jens Léon
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2021.618984

Genome-Wide Identification and Low Temperature Responsive Pattern of Actin Depolymerizing Factor (ADF) Gene Family in Wheat (Triticum aestivum L.)
Cited by: 8
Author(s): Ke Xu, Yong Zhao, Sihang Zhao, Haodong Liu, Weiwei Wang, Shuhua Zhang, Xueju Yang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2019.00034

Development of Stable Homozygous Wheat/Amblyopyrum muticum (Aegilops mutica) Introgression Lines and Their Cytogenetic and Molecular Characterization
Cited by: 18
Author(s): Julie King, Claire L. Newell, Surbhi Grewal, Stella Hubbart‐Edwards, Caiyun Yang, Duncan Scholefield, Stephen Ashling, Alex Stride, I. P. King
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.8322

Transcriptome-wide analysis of compression-induced microRNA expression alteration in breast cancer for mining therapeutic targets
Cited by: 23
Author(s): Baek Gil Kim, Suki Kang, Hyunho Han, Juhyun Lee, Ji Eun Kim, Sung Hwan Lee, Nam Hoon Cho
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-16-S1-S4

Underlying Data for Sequencing the Mitochondrial Genome with the Massively Parallel Sequencing Platform Ion Torrent™ PGM™
Cited by: 36
Author(s): Seung Beom Seo, Xiangpei Zeng, Jonathan L. King, Bobby LaRue, Mourad Assidi, Mohamed H. Alqahtani, Antti Sajantila, Bruce Budowle
Software Mentions: 1
Published: almost 12 years ago