Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Circos

https://packages.ecosyste.ms/registries/pypi.org/packages/Circos

Circos plots in Python!
10 versions
Latest release: about 1 year ago
55 downloads last month

Papers Mentioning Circos 2,252

10.1186/s12864-020-07330-2
Genome-wide identification of the 14–3-3 gene family and its participation in floral transition by interacting with TFL1/FT in apple
Cited by: 17
Author(s): Xiya Zuo, Shixiang Wang, Xiang Wen, Huiru Yang, Muhammad Mobeen Tahir, Shangong Zheng, Na An, Mingyu Han, Caiping Zhao, Dong Zhang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-015-2316-4
Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map
Cited by: 81
Author(s): Linhai Wang, Qiuju Xia, Yanxin Zhang, Xiaodong Zhu, Xiaofeng Zhu, Donghua Li, Xiliang Ni, Yuan Gao, Haitao Xiang, Xin Wei, Jingyin Yu, Zhiwu Quan, Xiurong Zhang
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2164-15-500
Genome sequencing of two Neorhizobium galegae strains reveals a noeT gene responsible for the unusual acetylation of the nodulation factors
Cited by: 27
Author(s): Janina Österman, Joanne P. Marsh, Pia Laine, Zhen Zeng, Edward Alatalo, John T. Sullivan, J. Peter W. Young, Jane Thomas‐Oates, Lars Paulín, Kristina Lindström
Software Mentions: 1
Published: over 10 years ago
10.1186/s12864-019-6262-4
Genome sequence of the model rice variety KitaakeX
Cited by: 49
Author(s): Rashmi Jain, Jerry Jenkins, Shengqiang Shu, Mawsheng Chern, Joel Martin, Dario Copetti, Phat Q. Duong, Nikki T. Pham, David Kudrna, Jayson Talag, Wendy Schackwitz, Anna Lipzen, David Dilworth, Diane Bauer, Jane Grimwood, Catherine R. Nelson, Xing Feng, Weibo Xie, Kerrie Barry, Rod A. Wing, Jeremy Schmutz, Guotian Li, Pamela C. Ronald
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-016-2773-4
Mapping the sex determination locus in the hāpuku (Polyprion oxygeneios) using ddRAD sequencing
Cited by: 44
Author(s): Jeremy K. Brown, John B. Taggart, Michaël Bekaert, Stefanie Wehner, Christos Palaiokostas, Alvin N. Setiawan, Jane E. Symonds, David J. Penman
Software Mentions: 1
Published: over 8 years ago
10.1186/s12864-016-3393-8
Integrating genetic maps in bambara groundnut [Vigna subterranea (L) Verdc.] and their syntenic relationships among closely related legumes
Cited by: 39
Author(s): Wai Kuan Ho, Hui Hui Chai, Presidor Kendabie, Nariman Salih Ahmad, Jaeyres Jani, Festo Massawe, Andrzej Kilian, Sean Mayes
Software Mentions: 1
Published: almost 8 years ago
10.1186/1471-2164-14-705
De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba
Cited by: 36
Author(s): Susana Torales, Máximo Rivarola, María Florencia Pomponio, Sergio González, Cintia V. Acuña, Paula Fernández, D. López Lauenstein, Aníbal Ramón Verga, H. Esteban Hopp, Norma Paniego, Susana N. Marcucci Poltri
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12864-017-4421-z
A genetic linkage map of Pleurotus tuoliensis integrated with physical mapping of the de novo sequenced genome and the mating type loci
Cited by: 21
Author(s): Wei Gao, Jian Qu, Jinxia Zhang, A.S.M. Sonnenberg, Qiang Chen, Yan Zhang, Chenyang Huang
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12864-017-3791-6
A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency
Cited by: 219
Author(s): Kieron D. Edwards, Noe Fernandez‐Pozo, Katherine E Drake-Stowe, Matt Humphry, Andrew Evans, Aureliano Bombarely, F H Allen, Rachel Hurst, Ben White, Sheri P. Kernodle, Jennifer R. Bromley, Juan Pablo Sanchez-Tamburrino, Ramsey S. Lewis, Lukas A. Mueller
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-017-4298-x
Genome-wide analysis of the Solanum tuberosum (potato) trehalose-6-phosphate synthase (TPS) gene family: evolution and differential expression during development and stress
Cited by: 33
Author(s): Yingchun Xu, Yanjie Wang, Neil S. Mattson, Yang Liu, Qijiang Jin
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2164-13-593
A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping
Cited by: 111
Author(s): Patrick Ollitrault, Javier Terol, Chunxian Chen, Claire T. Federici, Samia Lotfy, Isabelle Hippolyte, Frédérique Ollitrault, Aurélie Bérard, Aurélie Chauveau, José Cuenca, Gilles Costantino, A.Yildiz Kacar, Lisa Mu, Andrés García-Lor, Yann Froelicher, Pablo Aleza, Anne Boland, Claire Billot, Luís Navarro, François Luro, Mikeal L. Roose, Frederick G. Gmitter, Manuel Talón, Dominique Brunel
Software Mentions: 1
Published: almost 13 years ago
10.1186/s12864-016-2368-0
De novo transcriptome analyses of host-fungal interactions in oil palm (Elaeis guineensis Jacq.)
Cited by: 66
Author(s): Chai Ling Ho, Yung-Chie Tan, Keat Ai Yeoh, Ahmad Kamal Ghazali, Wai Yan Yee, Chee Choong Hoh
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12864-020-07264-9
New insights into the evolution and functional divergence of the CIPK gene family in Saccharum
Cited by: 21
Author(s): Weihua Su, Yongjuan Ren, Dongjiao Wang, Long Huang, Xueqin Fu, Hui Ling, Yachun Su, Ning Huang, Hanchen Tang, Liping Xu, Youxiong Que
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2164-14-750
Heterogeneity in the entire genome for three genotypes of peach [Prunus persica (L.) Batsch] as distinguished from sequence analysis of genomic variants
Cited by: 19
Author(s): Jonathan Fresnedo-Ramírez, Pedro J. Martínez-García, Dan E. Parfitt, Carlos H. Crisosto, Thomas M. Gradziel
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12864-017-3572-2
The genetic architecture of low-temperature adaptation in the wine yeast Saccharomyces cerevisiae
Cited by: 42
Author(s): Estéfani García‐Ríos, Miguel Morard, Leopold Parts, Gianni Liti, José Manuel Guillamón
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12864-018-5154-3
Genomic analysis of the Phalaenopsis pathogen Dickeya sp. PA1, representing the emerging species Dickeya fangzhongdai
Cited by: 14
Author(s): Jingxin Zhang, John Hu, Huolin Shen, Yucheng Zhang, Dan Sun, Xiaoming Pu, Qiyun Yang, Qiurong Fan, Birun Lin
Software Mentions: 1
Published: about 6 years ago
10.1186/s12864-016-2632-3
Comparative genomics reveals Cyclospora cayetanensis possesses coccidia-like metabolism and invasion components but unique surface antigens
Cited by: 41
Author(s): Shiyou Liu, Lin Wang, Huajun Zheng, Zhixiao Xu, Dawn M. Roellig, Na Li, Michael Frace, Kevin Tang, Michael J. Arrowood, Delynn M. Moss, Longxian Zhang, Yaoyu Feng, Lihua Xiao
Software Mentions: 1
Published: over 8 years ago
10.1186/s12864-015-1435-2
Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260T, a psychrotrophic lactic acid bacterium isolated from silage
Cited by: 40
Author(s): Yasuhiro Tanizawa, Masanori Tohno, Eli Kaminuma, Yasukazu Nakamura, Masanori Arita
Software Mentions: 1
Published: over 9 years ago
10.1186/s12864-018-5010-5
In vivo evolution of drug-resistant Mycobacterium tuberculosis in patients during long-term treatment
Cited by: 17
Author(s): Yuhui Xu, Fei Liu, Suting Chen, Juan Wu, Yongfei Hu, Baoli Zhu, Zhaogang Sun
Software Mentions: 1
Published: about 6 years ago
10.1186/s12864-019-5774-2
Prediction of pathogenicity genes involved in adaptation to a lupin host in the fungal pathogens Botrytis cinerea and Sclerotinia sclerotiorum via comparative genomics
Cited by: 9
Author(s): Mahsa Mousavi‐Derazmahalleh, Steven Chang, Geoff Thomas, Mark Derbyshire, Philipp E. Bayer, David Edwards, Matthew N. Nelson, William Erskine, Francisco J. López-Ruiz, Jon Clements, James K. Hane
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-016-2968-8
Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in Brachypodium distachyon
Cited by: 53
Author(s): Licao Cui, Kewei Feng, Mengxing Wang, Meng Wang, Pingchuan Deng, Weining Song, Xiaojun Nie
Software Mentions: 1
Published: over 8 years ago
10.1186/s12864-017-4176-6
Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus
Cited by: 18
Author(s): Nadia Raboanatahiry, Hongbo Chao, Liangxing Guo, Jianping Gan, Jun Xiang, Mingli Yan, Libin Zhang, Liang Yu, Maoteng Li
Software Mentions: 1
Published: about 7 years ago
10.1186/s12864-021-07647-6
Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response
Cited by: 20
Author(s): Xiaomin Xu, Lili Zhang, Wenhui Zhao, Liang Fu, Yuxuan Han, Keke Wang, Luyu Yan, Ye Li, Xiao­hong Zhang, Donghong Min
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-020-07290-7
Genome-wide identification, evolution and expression analysis of the aspartic protease gene family during rapid growth of moso bamboo (Phyllostachys edulis) shoots
Cited by: 7
Author(s): Xiaqin Wang, Xinyang Yan, Shubin Li, Jiangni Yun, Lianfeng Gu, Shuangquan Zou, Jin Zhang, Bobin Liu
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-018-5023-0
Analysis of genome sequence and symbiotic ability of rhizobial strains isolated from seeds of common bean (Phaseolus vulgaris)
Cited by: 10
Author(s): Alejandro Aguilar, Yolanda Mora, Araceli Dávalos, Lourdes Girard, Jaime Mora, Humberto Peralta
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2164-15-469
Comparative genomic analysis of Mycobacterium tuberculosis clinical isolates
Cited by: 32
Author(s): Fei Liu, Yongfei Hu, Qi Wang, Hong Min Li, George F. Gao, Cui Hua Liu, Baoli Zhu
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12864-018-5198-4
Whole genome sequencing of Trypanosoma cruzi field isolates reveals extensive genomic variability and complex aneuploidy patterns within TcII DTU
Cited by: 43
Author(s): João Luís Reis-Cunha, Rodrigo P. Baptista, Gabriela F. Rodrigues-Luiz, Anderson Coqueiro-dos-Santos, Hugo O. Valdivia, Laila Viana de Almeida, Mariana Santos Cardoso, Daniella Alchaar D’Ávila, Fernando H. C. Dias, Ricardo Toshio Fujiwara, Lúcia Maria da Cunha Galvão, Égler Chiari, Gustavo C. Cerqueira, Daniella Castanheira Bartholomeu
Software Mentions: 1
Published: about 6 years ago
10.1186/s12864-017-3714-6
A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection
Cited by: 10
Author(s): Trần Thị Ngọc Dung, Pham Thanh Duy, October M. Sessions, Uma K. Sangumathi, Voong Vinh Phat, Pham Thi Thanh Tam, Nguyen Thi Nguyen To, Tran My Phuc, Tran Thi Hong Chau, Nguyen Ngoc Minh Chau, Ngoc Nguyen Minh, Guy Thwaites, Maia A. Rabaa, Stephen Baker
Software Mentions: 1
Published: over 7 years ago
10.1186/s12864-017-4044-4
Genome-wide analysis of basic helix-loop-helix (bHLH) transcription factors in Brachypodium distachyon
Cited by: 69
Author(s): Xinhuan Niu, Yuxiang Guan, Shoukun Chen, Haifeng Li
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2164-11-688
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss
Cited by: 171
Author(s): Henk C. den Bakker, Craig Cummings, Vânia Ferreira, Paolo Vatta, Renato H. Orsi, Lovorka Degoricija, Melissa Barker, Olga V. Petrauskene, Manohar R. Furtado, Martin Wiedmann
Software Mentions: 1
Published: almost 14 years ago
10.1186/s12864-015-1334-6
Genetic variants in root architecture-related genes in a Glycine soja accession, a potential resource to improve cultivated soybean
Cited by: 60
Author(s): Silvas J. Prince, Li Song, Dan Qiu, João Vitor Maldonado dos Santos, Chao Chai, Trupti Joshi, Gunvant Patil, Babu Valliyodan, Tri D. Vuong, Mackensie Murphy, Konstantinos Krampis, David M. Tucker, R. M. Biyashev, Anne E. Dorrance, M. A. Saghai Maroof, Dong Xu, J. Grover Shannon, Henry T. Nguyen
Software Mentions: 1
Published: over 9 years ago
10.1186/s12864-018-4608-y
Identification of novel MITEs (miniature inverted-repeat transposable elements) in Coxiella burnetii: implications for protein and small RNA evolution
Cited by: 11
Author(s): Shaun Wachter, Rahul Raghavan, Jenny Wachter, Michael F. Minnick
Software Mentions: 1
Published: over 6 years ago
10.1186/1471-2164-14-706
Linkage mapping and expression analysis of miRNAs and their target genes during fiber development in cotton
Cited by: 14
Author(s): Xuemei Chen, Wenhui Gao, Jinfa Zhang, Xianlong Zhang, Zhongxu Lin
Software Mentions: 1
Published: about 11 years ago
10.1186/1471-2164-15-405
Complete sequences of organelle genomes from the medicinal plant Rhazya stricta(Apocynaceae) and contrasting patterns of mitochondrial genome evolution across asterids
Cited by: 62
Author(s): Seongjun Park, Tracey A. Ruhlman, Jamal S. M. Sabir, Mohammed H. Z. Mutwakil, Mohammed N. Baeshen, Meshaal J. Sabir, Nabih A. Baeshen, Robert K. Jansen
Software Mentions: 1
Published: over 10 years ago
10.1186/s12864-021-07848-z
Genome-wide identification, expression analysis, and functional study of the GRAS transcription factor family and its response to abiotic stress in sorghum [Sorghum bicolor (L.) Moench]
Cited by: 26
Author(s): Yu Fan, Jun Yan, Dili Lai, Hao Yang, Guoxing Xue, Ailing He, Tao Guo, Long Chen, Xiaobin Cheng, Dabing Xiang, Jingjun Ruan, Jianping Cheng
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-019-6431-5
Topology and expressed repertoire of the Felis catus T cell receptor loci
Cited by: 16
Author(s): Araya Radtanakatikanon, Simone Keller, Nikos Darzentas, Peter F. Moore, Géraldine Folch, Viviane Nguefack Ngoune, Marie Paule Lefranc, William Vernau
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12864-015-1242-9
Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage
Cited by: 96
Author(s): Jing Ma, Mengyao Li, Zhen Wang, Jun Tang, Ai‐Sheng Xiong
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12864-021-07396-6
Whole-genome characterization of Rosa chinensis AP2/ERF transcription factors and analysis of negative regulator RcDREB2B in Arabidopsis
Cited by: 14
Author(s): Wei Li, Ziwen Geng, Xinqiang Jiang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12864-019-5985-6
Genome-wide identification of GRAS genes in Brachypodium distachyon and functional characterization of BdSLR1 and BdSLRL1
Cited by: 21
Author(s): Xinhuan Niu, Shoukun Chen, Jiawei Li, Yue Liu, Wanquan Ji, Haifeng Li
Software Mentions: 1
Published: over 5 years ago
10.1186/s12913-019-4613-0
Economic evaluation studies in the field of HIV/AIDS: bibliometric analysis on research development and scopes (GAPRESEARCH)
Cited by: 19
Author(s): Bach Xuan Tran, Long H. Nguyen, Hugo C. Turner, Son Nghiem, Giang Thu Vu, Cuong Tat Nguyen, Carl A. Latkin, Cyrus S.H. Ho, Roger Ho
Software Mentions: 1
Published: about 5 years ago
10.1186/s12879-020-05025-3
Existence of hepatitis B virus surface protein mutations and other variants: demand for hepatitis B infection control in Cambodia
Cited by: 9
Author(s): Ko Ko, Kazuaki Takahashi, Shintaro Nagashima, Chiyo Yamamoto, Vichit Ork, Aya Sugiyama, Tomoyuki Akita, Masayuki Ohisa, Channarena Chuon, Shafiqul Hossain, Bunsoth Mao, Junko Tanaka
Software Mentions: 1
Published: over 4 years ago
10.1186/s12916-016-0659-6
Genetic variation in Mycobacterium tuberculosis isolates from a London outbreak associated with isoniazid resistance
Cited by: 17
Author(s): Giovanni Satta, Adam A. Witney, Robert J. Shorten, Magdalena Karlikowska, Marc Lipman, Timothy D. McHugh
Software Mentions: 1
Published: over 8 years ago
10.1186/s12920-018-0334-1
Methylation of the genes ROD1, NLRC5, and HKR1 is associated with aging in Hainan centenarians
Cited by: 17
Author(s): Qian Zeng, Xiaoping Chen, Chaoxue Ning, Qiao Zhu, Yao Yao, Yan Zhao, Fuxin Luan
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12920-019-0590-8
Detection of fetal trisomy and single gene disease by massively parallel sequencing of extracellular vesicle DNA in maternal plasma: a proof-of-concept validation
Cited by: 13
Author(s): Weiting Zhang, Sen Lu, Dandan Pu, Haiping Zhang, Lin Yang, Peng Zeng, Fengxia Su, Zhichao Chen, Mei Guo, Ying Gu, Yanmei Luo, Huamei Hu, Yanping Lu, Fang Chen, Ya Gao
Software Mentions: 1
Published: about 5 years ago
10.1186/s12866-018-1327-0
Characterization of Streptococcus pluranimalium from a cattle with mastitis by whole genome sequencing and functional validation
Cited by: 11
Author(s): Yongchu Pan, Haoran An, Tong Fu, Shiyu Zhao, Chengwang Zhang, Genhui Xiao, Jing-Ren Zhang, Xin-Fang Zhao, Gongzheng Hu
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2180-13-106
Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity
Cited by: 34
Author(s): Timothy J. Johnson, Juan E. Abrahante, Samuel S. Hunter, Melissa J. Hauglund, Fred M. Tatum, S. K. Maheswaran, R. E. Briggs
Software Mentions: 1
Published: almost 12 years ago
10.1186/s12866-020-02028-7
Complete genome analysis of a virulent Vibrio scophthalmi strain VSc190401 isolated from diseased marine fish half-smooth tongue sole, Cynoglossus semilaevis
Cited by: 9
Author(s): Zheng Zhang, Yongxiang Yu, Yingeng Wang, Xiao Liu, Lifang Wang, Hao Zhang, Meijie Liao, Bin Li
Software Mentions: 1
Published: about 4 years ago
10.1186/s12870-015-0550-1
Transcriptionally active LTR retrotransposons in Eucalyptus genus are differentially expressed and insertionally polymorphic
Cited by: 27
Author(s): Helena Sanches Marcon, Douglas Silva Domingues, Juliana Costa Silva, Rafael J. Borges, Fábio Filippi Matioli, Marcos R.M. Fontes, Celso Luís Marino
Software Mentions: 1
Published: over 9 years ago
10.1186/s12870-019-1716-z
Genome-wide identification and analysis of the EIN3/EIL gene family in allotetraploid Brassica napus reveal its potential advantages during polyploidization
Cited by: 19
Author(s): Mengdi Li, Ruihua Wang, Ziwei Liang, Xiaoming Wu, Jianbo Wang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-016-0765-9
Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus
Cited by: 45
Author(s): Pibiao Shi, Kateta Malangisha Guy, Weifang Wu, Fang Bingsheng, Jinghua Yang, Mingfang Zhang, Zhongyuan Hu
Software Mentions: 1
Published: over 8 years ago
10.1186/s12870-019-2168-1
Genome-wide analysis of polygalacturonase gene family from pear genome and identification of the member involved in pear softening
Cited by: 26
Author(s): Suling Zhang, Min Ma, Huping Zhang, Shaoling Zhang, Ming Qian, Zhen Zhang, Wenjian Luo, Jinbu Fan, Zhiqiang Liu, Yunlong Wang
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12870-018-1342-1
Characterization of the Populus Rab family genes and the function of PtRabE1b in salt tolerance
Cited by: 25
Author(s): Jin Zhang, Li Yu, Bobin Liu, Limin Wang, Li Zhang, Jianjun Hu, Jun Chen, Huanquan Zheng, Mengzhu Lu
Software Mentions: 1
Published: over 6 years ago
10.1186/s12870-020-02484-3
Genome-wide identification and characterization of SnRK family genes in Brassica napus
Cited by: 12
Author(s): Weizhuo Zhu, Dezhi Wu, Lixi Jiang, Lingzhen Ye
Software Mentions: 1
Published: over 4 years ago
10.1186/s12870-015-0552-z
Genome-wide Identification and Expression Analysis of the CDPK Gene Family in Grape, Vitis spp
Cited by: 79
Author(s): Kai Zhang, Yujun Han, Fengli Zhao, Huanming Yang, Yurong Gao, Yuju Ma, Yi Zheng, Yuejin Wang, Ying-Qiang Wen
Software Mentions: 1
Published: over 9 years ago
10.1186/s12870-018-1476-1
Identification, analysis and development of salt responsive candidate gene based SSR markers in wheat
Cited by: 33
Author(s): Amit Kumar Singh, Sundeep Chaurasia, Sundeep Kumar, Rakesh Singh, Jyoti Kumari, Mahesh C. Yadav, Nidhi Singh, Sonam Gaba, Sherry Rachel Jacob
Software Mentions: 1
Published: about 6 years ago
10.1186/s12870-018-1558-0
Sequencing of organellar genomes of Gymnomitrion concinnatum (Jungermanniales) revealed the first exception in the structure and gene order of evolutionary stable liverworts mitogenomes
Cited by: 18
Author(s): Kamil Myszczyński, Piotr Górski, Monika Ślipiko, Jakub Sawicki
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12870-014-0350-z
Location of chlorogenic acid biosynthesis pathway and polyphenol oxidase genes in a new interspecific anchored linkage map of eggplant
Cited by: 80
Author(s): Pietro Gramazio, Jaime Prohens, Jaime Prohens, Isabel Andújar, Francisco Javier Herraiz, Elena Castillo, Sandra Knapp, Rachel S. Meyer, Santiago Vilanova
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12870-018-1572-2
Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development
Cited by: 25
Author(s): Lin Chen, Yongxiang Li, Chunhui Li, Yunsu Shi, Yi Song, Dengfeng Zhang, Li Yu, Tianyu Wang
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12870-021-02913-x
Genome-wide identification, expression, and sequence analysis of CONSTANS-like gene family in cannabis reveals a potential role in plant flowering time regulation
Cited by: 9
Author(s): Gen Pan, Zheng Li, Ming Yin, Siqi Huang, Jie Tao, Anguo Chen, Jing Liu, Huijuan Tang, Li Chang, Yong Deng, Defang Li, Lining Zhao
Software Mentions: 1
Published: over 3 years ago
10.1186/s12870-019-2113-3
Molecular and transcriptional characterization of phosphatidyl ethanolamine-binding proteins in wild peanuts Arachis duranensis and Arachis ipaensis
Cited by: 12
Author(s): Hanqi Jin, Xuemin Tang, Mengge Xing, Hong Zhu, Jiongming Sui, Chunmei Cai, Shuai Li
Software Mentions: 1
Published: about 5 years ago
10.1186/s12870-016-0956-4
Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.)
Cited by: 60
Author(s): Yue Ma, Clarice J. Coyne, Michael A. Grusak, Michael Mazourek, Cheng Peng, Dorrie Main, Rebecca J. McGee
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12870-019-1970-0
Integrative omics analysis on phytohormones involved in oil palm seed germination
Cited by: 12
Author(s): Wang Yong, Yin Min Htwe, Jing Li, Peng Shi, David Zhang, Zhihao Zhao, Leonard Osayande Ihase
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-018-1389-z
The kinome of pineapple: catalog and insights into functions in crassulacean acid metabolism plants
Cited by: 10
Author(s): Kaikai Zhu, Hui Liu, Xinlu Chen, Qunkang Cheng
Software Mentions: 1
Published: about 6 years ago
10.1186/s12870-019-2031-4
Genome-wide identification of small heat-shock protein (HSP20) gene family in grape and expression profile during berry development
Cited by: 36
Author(s): Xiao-Ru Ji, Yi‐He Yu, Pei-Yi Ni, Guohai Zhang, Da‐Long Guo
Software Mentions: 1
Published: about 5 years ago
10.1186/s12870-021-03064-9
Genome-wide identification of ZmSnRK2 genes and functional analysis of ZmSnRK2.10 in ABA signaling pathway in maize (Zea mays L)
Cited by: 6
Author(s): Tiandan Long, Bo Xu, Yu‐Feng Hu, Yayun Wang, Changqing Mao, Yongbin Wang, Junjie Zhang, Hanmei Liu, Huanhuan Huang, Yanping Liu, Guowu Yu, Chunzhao Zhao, Yangping Li, Yubi Huang
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2229-13-53
A 1,681-locus consensus genetic map of cultivated cucumber including 67 NB-LRR resistance gene homolog and ten gene loci
Cited by: 55
Author(s): Luming Yang, Dawei Li, Yuhong Li, Xingfang Gu, Sanwen Huang, Jordi García-Más, Yiqun Weng
Software Mentions: 1
Published: over 11 years ago
10.1186/s12870-021-03077-4
Genome-wide identification of PTI1 family in Setaria italica and salinity-responsive functional analysis of SiPTI1–5
Cited by: 7
Author(s): Yongguan Huangfu, Junxiao Pan, Zhen Li, Qingguo Wang, Fatemeh Mastouri, Ying Liu, Stephen C. Yang, Min Liu, Shaojun Dai, Wei Liu
Software Mentions: 1
Published: over 3 years ago
10.1186/s12870-021-03194-0
Recent amplification of microsatellite-associated miniature inverted-repeat transposable elements in the pineapple genome
Cited by: 1
Author(s): Lian‐Yu Lin, Anupma Sharma, Qingyi Yu
Software Mentions: 1
Published: about 3 years ago
10.1186/s12870-018-1341-2
Genome-wide identification and characterization of InDels and SNPs in Glycine max and Glycine soja for contrasting seed permeability traits
Cited by: 21
Author(s): Gayatri Ramakrishna, Parampreet Kaur, Deepti Nigam, Pavan K. Chaduvula, Sangita Yadav, Akshay Talukdar, Nagendra Singh, Kishor Gaikwad
Software Mentions: 1
Published: over 6 years ago
10.1186/s12870-016-0859-4
Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress
Cited by: 102
Author(s): Komivi Dossa, Xin Wei, Donghua Li, Daniel Foncéka, Yanxin Zhang, Linhai Wang, Jingyin Yu, Boshou Liao, Diaga Diouf, Ndiaga Cissé
Software Mentions: 1
Published: over 8 years ago
10.1186/s12870-020-02683-y
Genome-wide characterization and expression analysis of the heat shock transcription factor family in pumpkin (Cucurbita moschata)
Cited by: 8
Author(s): Changwei Shen, Jingping Yuan
Software Mentions: 1
Published: about 4 years ago
10.1186/s12870-020-02618-7
Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling
Cited by: 5
Author(s): Li Wang, Bilal Ahmad, Liang Chen, Xianming Shi, Ruyi Sun, Songlin Zhang, Guozhen Du
Software Mentions: 1
Published: about 4 years ago
10.1186/s12870-020-02435-y
Molecular delimitation of European leafy liverworts of the genus Calypogeia based on plastid super-barcodes
Cited by: 20
Author(s): Monika Ślipiko, Kamil Myszczyński, Katarzyna Buczkowska, Alina Bączkiewicz, Monika Szczecińska, Jakub Sawicki
Software Mentions: 1
Published: over 4 years ago
10.1186/s12870-018-1252-2
The unique evolutionary pattern of the Hydroxyproline-rich glycoproteins superfamily in Chinese white pear (Pyrus bretschneideri)
Cited by: 5
Author(s): Huijun Jiao, Xing Liu, Shuang Sun, Peng Wang, Xin Qiao, Jiaming Li, Chao Tang, Juyou Wu, Shaoling Zhang, Shutian Tao
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12870-020-02362-y
Genome-wide identification of the expansin gene family reveals that expansin genes are involved in fibre cell growth in cotton
Cited by: 28
Author(s): Limin Lv, Dongyun Zuo, Xingfen Wang, Hongyan Cheng, Youping Zhang, Qiao-lian Wang, Guoli Song, Zhiying Ma
Software Mentions: 1
Published: over 4 years ago
10.1186/s12870-019-1951-3
Genome-wide identification, expression analysis and functional study of the GRAS gene family in Tartary buckwheat (Fagopyrum tataricum)
Cited by: 58
Author(s): Moyang Liu, Li Huang, Zhaotang Ma, Wenjun Sun, Qi Wu, Zizhong Tang, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-014-0401-5
Genome-wide identification and comparative analysis of the heat shock transcription factor family in Chinese white pear (Pyrus bretschneideri) and five other Rosaceae species
Cited by: 116
Author(s): Xin Qiao, Meng Li, Leiting Li, Hong Yin, Juyou Wu, Shaoling Zhang
Software Mentions: 1
Published: almost 10 years ago
10.1186/s12870-018-1519-7
Discovery and annotation of a novel transposable element family in Gossypium
Cited by: 5
Author(s): Hejun Lu, Xinglei Cui, Zhen Liu, Yuling Liu, Xingxing Wang, Zhongli Zhou, Xiaoyan Cai, Zhenmei Zhang, Xuewu Guo, Jinping Hua, Zhiying Ma, Xiyin Wang, Jinfa Zhang, Hong Zhang, Fang Liu, Kunbo Wang
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12870-018-1265-x
The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)
Cited by: 39
Author(s): Xiaolong Li, Shutian Tao, Shuwei Wei, Meiling Ming, Xiaosan Huang, Shaoling Zhang, Xiaolong Li
Software Mentions: 1
Published: over 6 years ago
10.1186/s12870-020-02620-z
Genome-wide survey, characterization, and expression analysis of bZIP transcription factors in Chenopodium quinoa
Cited by: 12
Author(s): Feng Li, Jianxia Liu, Xuhu Guo, Lili Yin, Hongli Zhang, Rong Wen
Software Mentions: 1
Published: about 4 years ago
10.1186/s12870-020-02740-6
Global analysis of the AP2/ERF gene family in rose (Rosa chinensis) genome unveils the role of RcERF099 in Botrytis resistance
Cited by: 20
Author(s): Dandan Li, Xintong Liu, Li-Zhe Shu, Hua Zhang, Shiya Zhang, Yin Song, Zhao Zhang
Software Mentions: 1
Published: about 4 years ago
10.1186/s12870-019-1891-y
Genome-wide identification and functional analysis of oleosin genes in Brassica napus L.
Cited by: 23
Author(s): Kang Chen, Yuping Yin, Si Liu, Zhenyi Guo, Kai Zhang, Liang Yu, Lina Zhang, Weiguo Zhao, Hongbo Chao, Maoteng Li
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-018-1230-8
Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress
Cited by: 67
Author(s): Wei Gao, Fuchun Xu, Dandan Guo, Jing-Ruo Zhao, Liu Ji, Yawei Guo, Prashant Kumar Singh, Xiaonan Ma, Lu Long, José Ramón Botella, Chun‐Peng Song
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2229-12-139
Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean
Cited by: 133
Author(s): Yang Jae Kang, Kil Hyun Kim, Sangrea Shim, Min Young Yoon, Shufeng Sun, Moon Young Kim, Kyujung Van, Suk-Ha Lee
Software Mentions: 1
Published: over 12 years ago
10.1186/s12870-018-1454-7
Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean
Cited by: 33
Author(s): Chao Yang, Wenjin Shen, Hongfeng Chen, Liutian Chu, Xu Yang, Xiaochen Zhou, Chuanliang Liu, Chunmiao Chen, Jiahui Zeng, Jin Liu, Qianfeng Li, Caiji Gao, Jean‐Benoît Charron, Ming Luo
Software Mentions: 1
Published: about 6 years ago
10.1186/s12870-020-02752-2
Genome-wide identification, phylogenetic and expression pattern analysis of GATA family genes in Brassica napus
Cited by: 25
Author(s): Weizhuo Zhu, Yiyi Guo, Yeke Chen, Dezhi Wu, Lixi Jiang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12870-019-1760-8
Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)
Cited by: 37
Author(s): Xin Gong, Liangyi Zhao, Xiaofei Song, Zekun Lin, Bingjie Gu, Jinxuan Yan, Shaoling Zhang, Shutian Tao, Xiaosan Huang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-014-0253-z
The plasticity of NBS resistance genes in sorghum is driven by multiple evolutionary processes
Cited by: 47
Author(s): Emma Mace, Shuaishuai Tai, David J. Innes, Ian D. Godwin, Wushu S. Hu, Bradley C. Campbell, Edward K. Gilding, Alan Cruickshank, Peter J. Prentis, Jun Wang, David R. Jordan
Software Mentions: 1
Published: about 10 years ago
10.1186/s12870-019-1957-x
Genome-wide identification and expression analysis of the trihelix transcription factor family in tartary buckwheat (Fagopyrum tataricum)
Cited by: 26
Author(s): Zhaotang Ma, Moyang Liu, Wenjun Sun, Li Huang, Qi Wu, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-021-03184-2
Genome-wide analysis of OSCA gene family members in Vigna radiata and their involvement in the osmotic response
Cited by: 17
Author(s): Lili Yin, Meiling Zhang, Ruigang Wu, Xiaoliang Chen, Fei Liu, Xing Bao-long
Software Mentions: 1
Published: about 3 years ago
10.1186/1753-6561-6-S6-P17
Mining cancer genomes in COSMIC
Cited by: 1
Author(s): Mingming Jia, Simon Forbes, David Beare, Nidhi Bindal, Prasad Gunasekaran, Kenric Leung, Chai Yin Kok, Sally Bamford, Charlotte G. Cole, Sari Ward, Jon W. Teague, Michael R. Stratton, Peter J. Campbell, Andrew Futreal
Software Mentions: 1
Published: about 12 years ago
10.1186/1753-6561-6-S6-P37
AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations
Cited by: 3
Author(s): Hue Vuong, Robert M. Stephens, Natalia Volfovsky
Software Mentions: 1
Published: about 12 years ago
10.1186/s12889-016-3630-8
The double burden of disease among mining workers in Papua, Indonesia: at the crossroads between Old and New health paradigms
Cited by: 15
Author(s): Rodrigo Rodríguez-Fernández, Nawi Ng, Dwidjo Susilo, John Prawira, Michael J. Bangs, Rachel M. Amiya
Software Mentions: 1
Published: about 8 years ago
10.1186/1756-0500-5-615
CooVar: Co-occurring variant analyzer
Cited by: 35
Author(s): Ismael A. Vergara, Christian Frech, Nansheng Chen
Software Mentions: 1
Published: about 12 years ago
10.1186/1752-0509-7-141
Systems biology approach to stage-wise characterization of epigenetic genes in lung adenocarcinoma
Cited by: 44
Author(s): Meeta Pradhan, Akshay Desai, Mathew Palakal
Software Mentions: 1
Published: almost 11 years ago
10.1093/bioinformatics/btv376
GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications
Cited by: 14
Author(s): Matthew R. Laird, Morgan G. I. Langille, Fiona S. L. Brinkman
Software Mentions: 1
Published: over 9 years ago
10.1186/s13062-015-0085-2
Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm
Cited by: 31
Author(s): Aurélia Caputo, Vicky Merhej, Kalliopi Georgiades, Pierre‐Edouard Fournier, Olivier Croce, Caroline Robert, Didier Raoult
Software Mentions: 1
Published: about 9 years ago
10.1186/s40659-015-0038-3
Integrated analyses of copy number variations and gene differential expression in lung squamous-cell carcinoma
Cited by: 17
Author(s): Yang Zhao, Bing Zhuan, Yan Yan, Simin Jiang, Tao Wang
Software Mentions: 1
Published: over 9 years ago
10.1186/s12938-019-0740-4
Analyzing brain structural differences associated with categories of blood pressure in adults using empirical kernel mapping-based kernel ELM+
Cited by: 3
Author(s): Xinying Yu, Bo Peng, Zeyu Xue, Hamidreza Saligheh Rad, Zhenlin Cai, Jun Shi, Jianbing Zhu, Yakang Dai
Software Mentions: 1
Published: almost 5 years ago
10.1155/2017/7904162
Characterization and Expression Profiling Analysis of Calmodulin Genes in Response to Salt and Osmotic Stresses in Pear (Pyrus bretschneideriRehd.) and in Comparison withArabidopsis
Cited by: 2
Author(s): Jun Tang, Jing Lin, Yong Li, Qiyun Yang, Qunkang Cheng, Zong‐Ming Cheng, Chang YouHong
Software Mentions: 1
Published: almost 8 years ago