10.1186/s40249-018-0493-5

Whole-genome sequencing and analysis of Plasmodium falciparum isolates from China-Myanmar border area
Cited by: 17
Author(s): Hai-Mo Shen, Shen-Bo Chen, Yan-Bing Cui, Bin Xu, Kokouvi Kassegne, Eniola Michael Abe, Yue Wang, Jun-Hu Chen
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2021.696300

Identification and Expression Analyses of Invertase Genes in Moso Bamboo Reveal Their Potential Drought Stress Functions
Cited by: 4
Author(s): Chenglei Zhu, Kebin Yang, Guangzhu Li, Ying Liu, Zhimin Gao
Software Mentions: 1
Published: about 5 years ago

10.1128/IAI.00612-17

The Streptococcus agalactiae Stringent Response Enhances Virulence and Persistence in Human Blood
Cited by: 21
Author(s): Thomas A. Hooven, Andrew J. Catomeris, Maryam Bonakdar, Luke J. Tallon, Ivette Santana-Cruz, Sandra Ott, Sean C. Daugherty, Hervé Tettelin, Adam J. Ratner
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.13642

New differentially expressed genes and differential DNA methylation underlying refractory epilepsy
Cited by: 31
Author(s): Xi Liu, Shu Ou, Tao Xu, Shiyong Liu, Jinxian Yuan, Hao Huang, Qiong Lu, Hui Yang, Lifen Chen, Xu Tan, Yangmei Chen
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12967-020-02480-z

The current landscape of coronavirus-host protein–protein interactions
Cited by: 62
Author(s): Laure Perrin-Cocon, Olivier Diaz, Clémence Jacquemin, Valentine Barthel, Eva Ogire, Christophe Ramière, Patrice André, Vincent Lotteau, Pierre‐Olivier Vidalain
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.15043

Whole-genome sequencing identifies new genetic alterations in meningiomas
Cited by: 16
Author(s): Ming Tang, Wei Heng, Lu Han, Jiaojiao Deng, Yuelong Wang, Meng Yang, YH Tang, Gang Guo, Liangxue Zhou, Aiping Tong
Software Mentions: 1
Published: over 9 years ago

10.7150/jca.48043

Tumor-derived Exosome Promotes Metastasis via Altering its Phenotype and Inclusions
Cited by: 5
Author(s): Yu Zhou, Chen Fan, Xiaodong Xie, Huifang Nie, Shu Lian, Chunlian Zhong, Chengbin Fu, Weiyu Shen, Bifei Li, Yongqing Ye, Yusheng Lu, Jia Lee
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2019.00665

Comparative Genomic Analysis of Three Salmonid Species Identifies Functional Candidate Genes Involved in Resistance to the Intracellular Bacterium Piscirickettsia salmonis
Cited by: 17
Author(s): José M. Yáñez, Grazyella Massako Yoshida, Alicia Lagarto Parra, Katharina Correa, Agustín Barría, Liane N. Bassini, Kris A. Christensen, María Eugenia López, Roberto Carvalheiro, Jean Paul Lhorente, Rodrigo Pulgar
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.02905

Basal Rot of Narcissus: Understanding Pathogenicity in Fusarium oxysporum f. sp. narcissi
Cited by: 8
Author(s): Andrew Taylor, Andrew D. Armitage, Claire Handy, Alison C. Jackson, Michelle T. Hulin, Richard J. Harrison, John P. Clarkson
Software Mentions: 1
Published: almost 7 years ago

10.3390/jcm9041011

Preclinical Models: Boosting Synergies for Improved Translation
Cited by: 0
Author(s): Chiara Attanasio, Mara Sangiovanni
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.15428

Whole genome sequencing of matched tumor, adjacent non-tumor tissues and corresponding normal blood samples of hepatocellular carcinoma patients revealed dynamic changes of the mutations profiles during hepatocarcinogenesis
Cited by: 8
Author(s): Rong Mao, Jie Liu, Guanfeng Liu, Shanshan Jin, Quan Xue, Liang Ma, Yan Fu, Na Zhao, Jinliang Xing, Lanjuan Li, Yunqing Qiu, Biaoyang Lin
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms19113526

Genome-Wide Investigation of the Auxin Response Factor Gene Family in Tartary Buckwheat (Fagopyrum tataricum)
Cited by: 49
Author(s): Moyang Liu, Zhaotang Ma, Anhu Wang, Tianrun Zheng, Li Huang, Wenjun Sun, Yanjun Zhang, Weiqiong Jin, Junyi Zhan, Yuntao Cai, Yang Tang, Qi Wu, Zizhong Tang, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: almost 8 years ago

10.3390/ijms19113338

Genome-Wide Identification and Characterization of Pectin Methylesterase Inhibitor Genes in Brassica oleracea
Cited by: 8
Author(s): Tingting Liu, Hui Yu, Xingpeng Xiong, Youjian Yu, Xiumei Yue, Jinlong Liu, Jiashu Cao
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2020.607432

Refinement of Draft Genome Assemblies of Pigeonpea (Cajanus cajan)
Cited by: 4
Author(s): Soma S. Marla, Pallavi Mishra, Ranjeet Maurya, Mohar Singh, Dhammaprakash Pandhari Wankhede, Anil Kumar, Mahesh C. Yadav, Naidu Subbarao, Sanjeev Kumar Singh, Rajesh Kumar
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20051107

Comprehensive Analysis of Differentially Expressed mRNA, lncRNA and circRNA and Their ceRNA Networks in the Longissimus Dorsi Muscle of Two Different Pig Breeds
Cited by: 71
Author(s): Jing Wang, Qiaoling Ren, Liushuai Hua, Junfeng Chen, Jiaqing Zhang, Hongjie Bai, Haili Li, Bin Xu, Zhihai Shi, Hai Xia Cao, Baosong Xing, Bai X
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20061395

Identification and Expression Profiling of Protein Phosphatases (PP2C) Gene Family in Gossypium hirsutum L.
Cited by: 29
Author(s): Hamna Shazadee, Nadeem Khan, Jingjing Wang, Chencan Wang, Jianguo Zeng, Zhongyi Huang, Xinyu Wang
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.598285

Isolation, Identification, and Complete Genome Assembly of an Endophytic Bacillus velezensis YB-130, Potential Biocontrol Agent Against Fusarium graminearum
Cited by: 30
Author(s): Wen Xu, Liyong Zhang, Paul H. Goodwin, Mingcong Xia, Jie Zhang, Qi Wang, Juan Boo Liang, Sun Ru, Chao Wu, Lirong Yang
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20061425

Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress
Cited by: 18
Author(s): Dongli Wang, Sen Meng, Wanlong Su, Yu Bao, Yingying Lǚ, Weilun Yin, Chao Liu, Xinli Xia
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20081916

PMN-MDSCs Enhance CTC Metastatic Properties through Reciprocal Interactions via ROS/Notch/Nodal Signaling
Cited by: 96
Author(s): Marc L. Sprouse, Thomas Welte, Debasish Boral, Haowen N. Liu, Wei Yin, Monika Vishnoi, Debalina Goswami-Sewell, Lili Li, Guangsheng Pei, Peilin Jia, Isabella Glitza-Oliva, Dario Marchetti
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20112730

The Class III Peroxidase (POD) Gene Family in Cassava: Identification, Phylogeny, Duplication, and Expression
Cited by: 27
Author(s): Chunlai Wu, Xuezhi Ding, Zehong Ding, Weiwei Tie, Yan Yan, Yu Wang, Hai Yang, Wei Hu
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20112771

Transcriptome Profile Analysis of Winter Rapeseed (Brassica napus L.) in Response to Freezing Stress, Reveal Potentially Connected Events to Freezing Stress
Cited by: 38
Author(s): Yuanyuan Pu, Lijun Liu, Junyan Wu, Yang Zhao, Jing Bai, Lan Ma, Jinli Yue, Jiaojiao Jin, Zaoxia Niu, Yan Fang, Weizheng Sun
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20123053

Whole Genome Sequencing and Analysis of Chlorimuron-Ethyl Degrading Bacteria Klebsiella pneumoniae 2N3
Cited by: 7
Author(s): Cheng Zhang, Qingkai Hao, Zhengyi Zhang, Xianghui Zhang, Hongyu Pan, Jiahuan Zhang, Hao Zhang, Fengjie Sun
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20133180

Genome-Wide Identification and Expression Profiling of the Polygalacturonase (PG) and Pectin Methylesterase (PME) Genes in Grapevine (Vitis vinifera L.)
Cited by: 31
Author(s): Nadeem Khan, Fizza Fatima, Muhammad Salman Haider, Hamna Shazadee, Zhongjie Liu, Ting Zheng, Jinggui Fang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20174319

Identification and Functional Analysis of the CLAVATA3/EMBRYO SURROUNDING REGION (CLE) Gene Family in Wheat
Cited by: 15
Author(s): Zheng Li, Dan Liú, Yu Xia, Ziliang Li, Na Niu, Shen Ma, Junwei Wang, Yulong Song, Gaisheng Zhang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174103

Systematic Analysis of Differentially Expressed Maize ZmbZIP Genes between Drought and Rewatering Transcriptome Reveals bZIP Family Members Involved in Abiotic Stress Responses
Cited by: 22
Author(s): Liru Cao, LU Xin-shi, Pengyu Zhang, Guorui Wang, Wei Li, Tongchao Wang
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20174115

Identification and in Silico Characterization of GT Factors Involved in Phytohormone and Abiotic Stresses Responses in Brachypodium distachyon
Cited by: 0
Author(s): Feng Wen, Li Xu, Yuebin Xie, Liwen Liang, Ming Jia, Xinsheng Liu, Xiaozhu Wu
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms20184553

Genomic Organization of the B3-Domain Transcription Factor Family in Grapevine (Vitis vinifera L.) and Expression during Seed Development in Seedless and Seeded Cultivars
Cited by: 28
Author(s): Bilal Ahmad, Songlin Zhang, Jin Yao, Mati Ur Rahman, Muhammad Hanif, Yanxun Zhu, Xiping Wang
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2019.02040

Tal1NXtc01 in Xanthomonas translucens pv. cerealis Contributes to Virulence in Bacterial Leaf Streak of Wheat
Cited by: 10
Author(s): Syed Mashab Ali Shah, Fazal Haq, Wenxiu Ma, Xiao Xu, Qianqian Wang, Zhi-Hong Xu, Lifang Zou, Bao‐Ku Zhu, Gongyou Chen
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.16442

Circular RNA alterations are involved in resistance to avian leukosis virus subgroup-J-induced tumor formation in chickens
Cited by: 47
Author(s): Xinheng Zhang, Yongde Yan, Xiaoya Lei, Aijun Li, Huanmin Zhang, Zhenkai Dai, Xinjian Li, Weiguo Chen, Wencheng Lin, Feng Chen, Jingyun Ma, Qingmei Xie
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2016.00251

Genomic Insight into the Host–Endosymbiont Relationship of Endozoicomonas montiporae CL-33T with its Coral Host
Cited by: 72
Author(s): Jun-Ren Ding, Jia Ho Shiu, Wen Ming Chen, Yin-Ru Chiang, Sen Lin Tang
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.16781

Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes
Cited by: 21
Author(s): Madalene A. Earp, Raghavan Rama, Qian Li, Junqiang Dai, Stacey J. Winham, Julie M. Cunningham, Yanina Natanzon, Kimberly R. Kalli, Xiaonan Hou, S. John Weroha, Paul Haluska, Kate Lawrenson, Simon A. Gayther, Chen Wang, Ellen L. Goode, Brooke L. Fridley
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18362

Differentially expressed lncRNAs and miRNAs with associated ceRNA networks in aged mice with postoperative cognitive dysfunction
Cited by: 41
Author(s): Changwei Wei, Ting Luo, Sheng Zou, Xiujuan Zhou, Wenzhen Shen, Xiaolin Ji, Qi Li, Anshi Wu
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms20235974

Genome-Wide Identification and Analysis of the NPR1-Like Gene Family in Bread Wheat and Its Relatives
Cited by: 13
Author(s): Xian Liu, Zhiguo Liu, Xinhui Niu, Qian Xu, Long Yang
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms20246167

Genome-Wide Identification and Expression Analysis of the Ascorbate Oxidase Gene Family in Gossypium hirsutum Reveals the Critical Role of GhAO1A in Delaying Dark-Induced Leaf Senescence
Cited by: 9
Author(s): Ze Ya Pan, Lihua Chen, Fei Wang, Wangyang Song, Aiping Cao, Shuangquan Xie, Xifeng Chen, Xiang Jin, Hongbin Li
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21010321

Histone Deacetylase (HDAC) Gene Family in Allotetraploid Cotton and Its Diploid Progenitors: In Silico Identification, Molecular Characterization, and Gene Expression Analysis under Multiple Abiotic Stresses, DNA Damage and Phytohormone Treatments
Cited by: 20
Author(s): Muhammad Imran, Sarfraz Shafiq, Muhammad Kashif Naeem, Émilie Widemann, Muhammad Zeeshan Munir, Kevin B. Jensen, Richard R.‐C. Wang
Software Mentions: 1
Published: almost 7 years ago

10.3389/fgene.2019.00812

Complete Genome Sequencing and Comparative Genome Characterization of Lactobacillus johnsonii ZLJ010, a Potential Probiotic With Health-Promoting Properties
Cited by: 32
Author(s): Wei Zhang, Jing Wang, Dongyan Zhang, Hui Liu, Sixin Wang, Yamin Wang, Hai‐Feng Ji
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21020628

Placenta-Specific Genes, Their Regulation During Villous Trophoblast Differentiation and Dysregulation in Preterm Preeclampsia
Cited by: 24
Author(s): András Szilágyi, Zsolt Gelencser, Roberto Romero, Yi Xu, Péter Király, Attila Demeter, János Pálhalmi, Balázs Győrffy, Kata Juhász, Petronella Hupuczi, Katalin A. Kékesi, Gerold Meinhardt, Zoltán Papp, Sorin Drăghici, Offer Erez, Adi L. Tarca, Martin Knöfler, Nándor Gábor Than
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21020608

Genome-Wide Investigation of Heat Shock Transcription Factor Family in Wheat (Triticum aestivum L.) and Possible Roles in Anther Development
Cited by: 23
Author(s): Jiali Ye, Xiaohong R. Yang, Hu Gan, Qi Liu, Wei Li, Lingli Zhang, Xiyue Song
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21020634

Genome-Wide Identification and Characterization of the NAC Transcription Factor Family in Musa Acuminata and Expression Analysis during Fruit Ripening
Cited by: 32
Author(s): Bin Li, Ruiyi Fan, Qiaosong Yang, Chunhua Hu, Ou Sheng, Guiming Deng, Tingting Dong, Chunyu Li, Xinxiang Peng, Fangcheng Bi, Ganjun Yi
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.00814

Gut Microbiome Influences the Efficacy of PD-1 Antibody Immunotherapy on MSS-Type Colorectal Cancer via Metabolic Pathway
Cited by: 82
Author(s): Xinjian Xu, Ji Lv, Fang Guo, Jing Li, Yitao Jia, Da Jiang, Na Wang, Chao Zhang, Lingyu Kong, Ya-Bin Liu, Yanni Zhang, Jian Lv, Zhongxin Li
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21031000

Comprehensive Profiling of Tubby-Like Protein Expression Uncovers Ripening-Related TLP Genes in Tomato (Solanum lycopersicum)
Cited by: 15
Author(s): Yaoxin Zhang, Xiaoqing He, Dan Su, Feng Yuan, Haochen Zhao, Heng Deng, Mingchun Liu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21041293

Characterization of the OFP Gene Family and its Putative Involvement of Tuberous Root Shape in Radish
Cited by: 8
Author(s): Yanping Wang, Qingbiao Wang, Hao Wu, Honghe Sun, Li Zhang
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2020.590535

Genome-Wide Identification and Comparative Analysis of ARF Family Genes in Three Apiaceae Species
Cited by: 6
Author(s): Qiaoying Pei, Nan Li, Qing Yang, Tong Wu, Shuyan Feng, Xuehuan Feng, Zange Jing, Rong Zhou, Ke Gong, Tong Yu, Zhen Wang, Xiaoming Song
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2019.00487

Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation
Cited by: 9
Author(s): Deborah Weighill, David Macaya‐Sanz, Stephen P. DiFazio, Wayne Joubert, Manesh Shah, Jeremy Schmutz, Avinash Sreedasyam, Gerald A. Tuskan, Daniel Jacobson
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2019.03071

Bacteria From the Multi-Contaminated Tinto River Estuary (SW, Spain) Show High Multi-Resistance to Antibiotics and Point to Paenibacillus spp. as Antibiotic-Resistance-Dissemination Players
Cited by: 11
Author(s): Benedito Eduardo-Correia, Héctor Gabriel Morales-Filloy, José Pascual Abad
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2019.01003

Guarani Virophage, a New Sputnik-Like Isolate From a Brazilian Lake
Cited by: 15
Author(s): Saïd Mougari, Meriem Bekliz, Jônatas Santos Abrahão, Fabrizio Di Pinto, Anthony Levasseur, Bernard La Scola
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2021.737194

StAR-Related Lipid Transfer (START) Domains Across the Rice Pangenome Reveal How Ontogeny Recapitulated Selection Pressures During Rice Domestication
Cited by: 2
Author(s): Sanjeet Kumar Mahtha, Ravi Kiran Purama, Gitanjali Yadav
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21124436

The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase
Cited by: 8
Author(s): Xianjun Li, Junhuan Wang, Jia Yang, Aikebaier Reheman, Yanchun Yan
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.686008

Highly Efficient CRISPR-Mediated Base Editing in Sinorhizobium meliloti
Cited by: 4
Author(s): Longxiang Wang, Yuan Xiao, Xiaowei Wei, Jimin Pan, Deqiang Duanmu
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00632

In Silico Genome-Wide Analysis of the Pear (Pyrus bretschneideri) KNOX Family and the Functional Characterization of PbKNOX1, an Arabidopsis BREVIPEDICELLUS Orthologue Gene, Involved in Cell Wall and Lignin Biosynthesis
Cited by: 23
Author(s): Xi Cheng, Manli Li, Muhammad Abdullah, Guohui Li, Jingyun Zhang, Muhammad Aamir Manzoor, Han Wang, Qing Jin, Tao‐Shan Jiang, Yongping Cai, Dahui Li, Yi Lin
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21155344

Identification and Expression Analysis of Hormone Biosynthetic and Metabolism Genes in the 2OGD Family for Identifying Genes That May Be Involved in Tomato Fruit Ripening
Cited by: 6
Author(s): Qiangqiang Ding, Zhen Wang, Juan Xue, Xinxin Yang, Jun Fan, Hong Chen, Yang Li, Hongmiao Wu
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2019.00404

Genome-Wide Interaction and Pathway Association Studies for Body Mass Index
Cited by: 5
Author(s): Hongxiao Jiao, Yong Zang, Miaomiao Zhang, Yuan Zhang, Yaogang Wang, Kai Wang, Richard A. Price, Wei Dong Li
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.27085

Deep insights into the response of human cervical carcinoma cells to a new cyano enone-bearing triterpenoid soloxolone methyl: a transcriptome analysis
Cited by: 10
Author(s): Andrey Markov, Alexander Kel, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21175947

Genome-Wide Systematic Characterization of the NPF Family Genes and Their Transcriptional Responses to Multiple Nutrient Stresses in Allotetraploid Rapeseed
Cited by: 22
Author(s): Hao Zhang, Shuang Li, M. Shi, Sheliang Wang, Lei Shi, Fangsen Xu, Guangda Ding
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186729

Whole-Genome Sequencing Analysis of Quorum Quenching Bacterial Strain Acinetobacter lactucae QL-1 Identifies the FadY Enzyme for Degradation of the Diffusible Signal Factor
Cited by: 13
Author(s): Yao Tian, Tianxing Zhou, Xudan Xu, Wenping Zhang, Xinghui Fan, Sandhya Mishra, Lian-Hui Zhang, Xin Zhou, Shaohua Chen
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186709

Identification, Characterization, and Genomic Analysis of Novel Serratia Temperate Phages from a Gold Mine
Cited by: 11
Author(s): Katarzyna Bujak, Przemysław Decewicz, Jacek Kamiński, Monika Radlińska
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21217876

Dual Effect of Soloxolone Methyl on LPS-Induced Inflammation In Vitro and In Vivo
Cited by: 9
Author(s): Andrey Markov, Aleksandra V. Sen’kova, Valeriya O. Babich, Kirill V. Odarenko, Vadim A Talyshev, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218064

An Earliest Endosymbiont, Wolbachia massiliensis sp. nov., Strain PL13 from the Bed Bug (Cimex hemipterus), Type Strain of a New Supergroup T
Cited by: 20
Author(s): Younes Laidoudi, Anthony Levasseur, Hacène Medkour, Mossaab Maaloum, Mariem Ben Khedher, Masse Sambou, Hubert Bassène, Bernard Davoust, Florence Fénollar, Didier Raoult, Oleg Mediannikov
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21218262

Genome-Wide Identification and Functional Characterization of the Cation Proton Antiporter (CPA) Family Related to Salt Stress Response in Radish (Raphanus sativus L.)
Cited by: 18
Author(s): Yan Wang, Jiali Ying, Zhangping Yang, Liang Xu, Wanting Zhang, Meng Ni, Yuelin Zhu, Liwang Liu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2016.01960

Gene Turnover Contributes to the Evolutionary Adaptation of Acidithiobacillus caldus: Insights from Comparative Genomics
Cited by: 22
Author(s): Xian Zhang, Xueduan Liu, Qiang He, Weiling Dong, Xiaoxia Zhang, Fenliang Fan, Deliang Peng, Wenkun Huang, Huaqun Yin
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2021.733631

Discovery of Novel Viruses Associated With the Invasive Cane Toad (Rhinella marina) in Its Native and Introduced Ranges
Cited by: 5
Author(s): Alice G. Russo, Emma F. Harding, Grace J. H. Yan, D. Selechnik, Simon Ducatez, Jayna L. DeVore, Jia Zhou, Roshmi Rekha Sarma, Yin Peng Lee, Mark F. Richardson, Richard Shine, Lee A. Rollins, Peter A. White
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2017.01422

SMRT Sequencing Revealed Mitogenome Characteristics and Mitogenome-Wide DNA Modification Pattern in Ophiocordyceps sinensis
Cited by: 35
Author(s): Xincong Kang, Liqin Hu, Pengyuan Shen, Rui Li, Dongbo Liu
Software Mentions: 1
Published: about 9 years ago

10.3389/fgene.2018.00494

Molecular Evolution and Stress and Phytohormone Responsiveness of SUT Genes in Gossypium hirsutum
Cited by: 13
Author(s): Wei Li, Kuan Sun, Zhongying Ren, Chengxiang Song, Xinwu Pei, Yangai Liu, Zhenyu Wang, Kunlun He, Fei Zhang, Xin Zhou, Xiongfeng Ma, Daigang Yang
Software Mentions: 1
Published: almost 8 years ago

10.1186/gb-2011-12-9-r94

Comparison of solution-based exome capture methods for next generation sequencing
Cited by: 246
Author(s): Anna-Maija Sulonen, Pekka Ellonen, Henrikki Almusa, Maija Lepistö, Samuli Eldfors, Sari Hannula, Timo Miettinen, Henna Tyynismaa, Perttu Salo, Caroline A. Heckman, Heikki Joensuu, Taneli Raivio, Anu Suomalainen, Janna Saarela
Software Mentions: 1
Published: almost 16 years ago

10.3390/nu13072326

Systematic Bioinformatic Analyses of Nutrigenomic Modifications by Polyphenols Associated with Cardiometabolic Health in Humans—Evidence from Targeted Nutrigenomic Studies
Cited by: 14
Author(s): Tatjana Ruskovska, Irena Budić-Leto, Karla Fabiola Corral-Jara, Vladimir Ajdžanović, Anna Arola‐Arnal, Francisca Isabel Bravo, Georgia-Eirini Deligiannidou, Jaroslav Havlík, Milkica Janeva, Elena Kistanova, Christos Kontogiorgis, Irèna Krga, Marika Massaro, Marko Miler, Verica Milošević, Christine Morand, Egeria Scoditti, Manuel Suárez, David Vauzour, Dragan Milenković
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02169

Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani
Cited by: 14
Author(s): Alison M. Day, Jiyoon Ahn, George P. C. Salmond
Software Mentions: 1
Published: about 8 years ago

10.1186/gb-2012-13-9-r48

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors
Cited by: 235
Author(s): Kevin Y. Yip, Chao Cheng, Nitin Bhardwaj, James Brown, Jing Leng, Anshul Kundaje, Joel Rozowsky, Ewan Birney, Peter J. Bickel, M Snyder, Mark Gerstein
Software Mentions: 1
Published: almost 15 years ago

10.3389/fmicb.2017.01507

Genome Sequencing Reveals the Potential of Achromobacter sp. HZ01 for Bioremediation
Cited by: 38
Author(s): Yongfeng Hong, Cong-Cong Ye, Qing Zhou, Xiaoying Wu, Jianping Yuan, Juan Peng, Hailin Deng, Jiang-Hai Wang
Software Mentions: 1
Published: about 9 years ago

10.1186/gb-2013-14-11-r126

Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors
Cited by: 81
Author(s): Miriam Ragle Aure, Suvi‐Katri Leivonen, Thomas Fleischer, Qi Zhu, Jens Overgaard, Jan Alsner, Trine Tramm, Riku Louhimo, Grethe I.G. Alnæs, Merja Perälä, Florence Busato, Nizar Touleimat, Jörg Tost, Anne‐Lise Børresen‐Dale, Sampsa Hautaniemi, Olga G. Troyanskaya, Ole Christian Lingjærde, Kristine Kleivi Sahlberg, Vessela N. Kristensen
Software Mentions: 1
Published: almost 14 years ago

10.3390/ijms21228639

Whole Genome Sequencing and Tn5-Insertion Mutagenesis of Pseudomonas taiwanensis CMS to Probe Its Antagonistic Activity Against Rice Bacterial Blight Disease
Cited by: 1
Author(s): Wen-Jen Chen, Tzu-Yen Kuo, Chun-Yi Chen, Feng-Chia Hsieh, Yu Liang Yang, Je-Ruei Liu, Ming-Che Shih
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.01654

Environmental Bacteriophages of the Emerging Enterobacterial Phytopathogen, Dickeya solani, Show Genomic Conservation and Capacity for Horizontal Gene Transfer between Their Bacterial Hosts
Cited by: 15
Author(s): Alison M. Day, Jiyoon Ahn, Xinzhe Fang, George P. C. Salmond
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2016.00340

Genomic Insights into a New Citrobacter koseri Strain Revealed Gene Exchanges with the Virulence-Associated Yersinia pestis pPCP1 Plasmid
Cited by: 11
Author(s): Fabrice Armougom, Idir Bitam, Olivier Croce, Vicky Merhej, Lina Barassi, Ti-Thien Nguyen, Bernard La Scola, Didier Raoult
Software Mentions: 1
Published: over 10 years ago

10.3389/fmicb.2021.731711

Comparative Genomic Analysis Uncovered Evolution of Pathogenicity Factors, Horizontal Gene Transfer Events, and Heavy Metal Resistance Traits in Citrus Canker Bacterium Xanthomonas citri subsp. citri
Cited by: 4
Author(s): Chang‐Jen Huang, Ting-Li Wu, Po Xing Zheng, Jheng-Yang Ou, Hui-Fang Ni, Yao‐Cheng Lin
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2016.00176

Retention and Molecular Evolution of Lipoxygenase Genes in Modern Rosid Plants
Cited by: 7
Author(s): Chen Zhu, Danmei Chen, Wenyuan Chu, Dan Zhu, Hanwei Yan, Yan Xiang
Software Mentions: 1
Published: about 10 years ago

10.3389/fgene.2021.584886

Genome-Wide Characterization of HSP90 Gene Family in Cucumber and Their Potential Roles in Response to Abiotic and Biotic Stresses
Cited by: 9
Author(s): Kaijing Zhang, Shuaishuai He, Sui YiHu, Qinghai Gao, Shuangshuang Jia, Xingrong Lu, Jia Li
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2018.02099

Deciphering Resistome and Virulome Diversity in a Porcine Slaughterhouse and Pork Products Through Its Production Chain
Cited by: 16
Author(s): Guillermo Campos Calero, Natacha Caballero Gómez, Nabil Benomar, Beatriz Pérez Montoro, Charles W. Knapp, Antonio Gálvez, Hikmate Abriouel
Software Mentions: 1
Published: about 8 years ago

10.3389/fmicb.2017.01673

An Anthropocentric View of the Virosphere-Host Relationship
Cited by: 25
Author(s): Rodrigo Araújo Lima Rodrigues, Aron José Pazin de Andrade, Paulo Victor de Miranda Boratto, Giliane de Souza Trindade, Erna Geessien Kroon, Jônatas Santos Abrahão
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2021.696588

A High Starch Diet Alters the Composition of the Intestinal Microbiota of Largemouth Bass Micropterus salmoides, Which May Be Associated With the Development of Enteritis
Cited by: 10
Author(s): Xiaoli Huang, Zhong Liu, Qin Kang, Sha Li, Yun Feng, Yi Geng, Defang Chen, Yangping Ou, Shiyong Yang, Lizi Yin, Wei Luo
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2019.00482

Streptomyces tirandamycinicus sp. nov., a Novel Marine Sponge-Derived Actinobacterium With Antibacterial Potential Against Streptococcus agalactiae
Cited by: 34
Author(s): Xiaolong Huang, Fan-Dong Kong, Shilei Zhou, Dong Huang, Jing Zheng, Weiming Zhu
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.580719

Metabolic Contributions of an Alphaproteobacterial Endosymbiont in the Apicomplexan Cardiosporidium cionae
Cited by: 8
Author(s): Elizabeth Sage Hunter, Christopher Paight, Christopher E. Lane
Software Mentions: 1
Published: almost 6 years ago

10.1515/biol-2020-0032

Changes in the fecal microbiome of the Yangtze finless porpoise during a short-term therapeutic treatment
Cited by: 4
Author(s): Lei You, Congping Ying, Kai Li, Xizhao Zhang, Danqing Lin, Denghua Yin, Jialü Zhang, Pao Xu
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2016.01541

Genome Sequencing and Comparative Genomics Analysis Revealed Pathogenic Potential in Penicillium capsulatum as a Novel Fungal Pathogen Belonging to Eurotiales
Cited by: 9
Author(s): Ying Yang, Min Chen, Zongwei Li, Abdullah M. S. Al‐Hatmi, Sybren de Hoog, Weihua Pan, Qiang Ye, Xiaochen Bo, Zhen Li, Shengqi Wang, Junzhi Wang, Huipeng Chen, Wanqing Liao
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2019.01373

Genetic Diversity, Virulence, Race Profiling, and Comparative Genomic Analysis of the Fusarium oxysporum f. sp. conglutinans Strains Infecting Cabbages in China
Cited by: 16
Author(s): Xing Liu, Miaomiao Xing, Chunli Kong, Zhiyuan Fang, Limei Yang, Yangyong Zhang, Yong Wang, Jian Ling, Youyou Yang, Honghao Lv
Software Mentions: 1
Published: over 7 years ago

10.1186/s13059-018-1458-5

A large-scale whole-genome sequencing analysis reveals highly specific genome editing by both Cas9 and Cpf1 (Cas12a) nucleases in rice
Cited by: 200
Author(s): Xu Tang, Guanqing Liu, Jianping Zhou, Qiao Ren, Qi You, Li Tian, Xuhui Xin, Zhiyong Zhong, Binglin Liu, Xuelian Zheng, Dengwei Zhang, Aimee Malzahn, Zhiyun Gong, Yiping Qi, Tao Zhang, Yong Zhang
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.00785

Complete Mitochondrial Genome of the Fungal Biocontrol Agent Trichoderma atroviride: Genomic Features, Comparative Analysis and Insight Into the Mitochondrial Evolution in Trichoderma
Cited by: 8
Author(s): Yunyoung Kwak
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2021.674147

Molecular Characterization and Survive Abilities of Salmonella Heidelberg Strains of Poultry Origin in Brazil
Cited by: 12
Author(s): Roberta Torres de Melo, Newton Nascentes Galvão, Micaela Guidotti Takeuchi, Phelipe Augusto Borba Martins Peres, Belchiolina Beatriz Fonseca, Rodrigo Profeta, Vasco Azevedo, Guilherme Paz Monteiro, Bertram Brenig, Daise Aparecida Rossi
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22052699

Genome Wide Analysis of U-Box E3 Ubiquitin Ligases in Wheat (Triticum aestivum L.)
Cited by: 14
Author(s): Dae Yeon Kim, Yong Jin Lee, Min Jeong Hong, Jae Ho Kim, Yong Weon Seo
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.696102

Description, Taxonomy, and Comparative Genomics of a Novel species, Thermoleptolyngbya sichuanensis sp. nov., Isolated From Hot Springs of Ganzi, Sichuan, China
Cited by: 13
Author(s): Jie Tang, Liheng Li, Meijin Li, Lianming Du, Mahfuzur Rahman Shah, Małgorzata Waleron, Krzysztof Waleron, Maurycy Daroch
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.01044

Exopolysaccharide, Isolated From a Novel Strain Bifidobacterium breve lw01 Possess an Anticancer Effect on Head and Neck Cancer – Genetic and Biochemical Evidences
Cited by: 26
Author(s): Lin Wang, Yifei Wang, Qingxiang Li, Kai Tian, Le Xu, Guorong Liu, Chuanbin Guo
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2021.618649

The Mitogenomes of Ophiostoma minus and Ophiostoma piliferum and Comparisons With Other Members of the Ophiostomatales
Cited by: 9
Author(s): Abdullah Zubaer, Alvan Wai, Nikita Patel, Jordan Perillo, Georg Hausner
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.611143

Impact of Bacillus on Phthalides Accumulation in Angelica sinensis (Oliv.) by Stoichiometry and Microbial Diversity Analysis
Cited by: 5
Author(s): Wei-Meng Feng, Pei Liu, Hui Yan, Sen Zhang, Erxin Shang, Guang Yu, Shu Jiang, Dawei Qian, Junwei Ma, Jin‐Ao Duan
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2021.749218

Complete Genome Sequence of Weissella confusa LM1 and Comparative Genomic Analysis
Cited by: 4
Author(s): Shenglei Yuan, Yundan Wang, Fangqing Zhao, Le Kang
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.02047

Structural and Proteomic Studies of the Aureococcus anophagefferens Virus Demonstrate a Global Distribution of Virus-Encoded Carbohydrate Processing
Cited by: 4
Author(s): Eric R. Gann, Yuejiao Xian, Paul E. Abraham, Robert L. Hettich, Todd B. Reynolds, Chuan Xiao, Steven W. Wilhelm
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2018.01573

The Identification of DepB: An Enzyme Responsible for the Final Detoxification Step in the Deoxynivalenol Epimerization Pathway in Devosia mutans 17-2-E-8
Cited by: 41
Author(s): Jason Carere, Yousef I. Hassan, Dion Lepp, Ting Zhou
Software Mentions: 1
Published: over 8 years ago

10.1093/gbe/evu037

Ancient Gene Duplicates in Gossypium (Cotton) Exhibit Near-Complete Expression Divergence
Cited by: 60
Author(s): Simon Renny‐Byfield, Joseph P. Gallagher, Corrinne E. Grover, Emmanuel Szadkowski, Justin T. Page, Joshua A. Udall, Xiyin Wang, Andrew H. Paterson, Jonathan F. Wendel
Software Mentions: 1
Published: over 12 years ago

10.3389/fmicb.2015.00349

Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population
Cited by: 52
Author(s): Jessica M. Labonté, Erin K. Field, Maggie C. Y. Lau, Dylan Chivian, Esta van Heerden, K. Eric Wommack, Thomas L. Kieft, Tullis C. Onstott, Ramunas Stepanauskas
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms22062821

Genome-Wide Identification and Characterization of AP2/ERF Transcription Factor Family Genes in Oil Palm under Abiotic Stress Conditions
Cited by: 14
Author(s): Lixia Zhou, Rajesh Yarra
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01934

Comparative Genomic and Secretomic Analysis Provide Insights Into Unique Agar Degradation Function of Marine Bacterium Vibrio fluvialis A8 Through Horizontal Gene Transfer
Cited by: 5
Author(s): Chunsheng Li, Chi Li, Laihao Li, Xianqing Yang, Shengjun Chen, Qi Bo, Yongqiang Zhao
Software Mentions: 1
Published: about 6 years ago

10.1093/gbe/evu175

Genomic Signatures of Distributive Conjugal Transfer among Mycobacteria
Cited by: 38
Author(s): Tatum D Mortimer, Caitlin S. Pepperell
Software Mentions: 1
Published: about 12 years ago

10.1093/gbe/evu201

Genomic Evolution of Saccharomyces cerevisiae under Chinese Rice Wine Fermentation
Cited by: 27
Author(s): Yudong Li, Weiping Zhang, Dao-Qiong Zheng, Zhan Zhou, Wenwen Yu, Lei Zhang, Lei Feng, Xinmiao Liang, Wenjun Guan, Jingwen Zhou, Jian Chen, Zhenguo Lin
Software Mentions: 1
Published: about 12 years ago