10.3390/jof7050384

Differential Expression of Amanitin Biosynthetic Genes and Novel Cyclic Peptides in Amanita molliuscula
Cited by: 3
Author(s): Yunjiao Lüli, Shengwen Zhou, Xuan Li, Zuohong Chen, Zhu‐Liang Yang, Hong Luo
Software Mentions: 2
Published: over 5 years ago

10.1155/2013/678969

Conservation, Divergence, and Genome-Wide Distribution of<i>PAL</i>and<i>POX A</i>Gene Families in Plants
Cited by: 29
Author(s): Hukam C. Rawal, Nisha Singh, Tilak Raj Sharma
Software Mentions: 2
Published: almost 14 years ago

10.1186/s13045-017-0465-4

An imprinted non-coding genomic cluster at 14q32 defines clinically relevant molecular subtypes in osteosarcoma across multiple independent datasets
Cited by: 36
Author(s): Katherine E. Hill, Andrew D. Kelly, Marieke L. Kuijjer, William T. Barry, Ahmed Rattani, Cassandra Garbutt, Haydn Kissick, Katherine A. Janeway, Antonio R. Perez–Atayde, Jeffrey D. Goldsmith, Mark C. Gebhardt, Mohamed S. Arredouani, Greg Cote, Francis J. Hornicek, Edwin Choy, Zhenfeng Duan, John Quackenbush, Benjamin Haibe‐Kains, Dimitrios Spentzos
Software Mentions: 2
Published: over 9 years ago

10.3390/ijerph16142474

Implications of Soil Pollution with Diesel Oil and BP Petroleum with ACTIVE Technology for Soil Health
Cited by: 33
Author(s): Agata Borowik, Jadwiga Wyszkowska, M. Kucharski, J. Kucharski
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.40655

Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis
Cited by: 64
Author(s): Leonardo Furci, Ritushree Jain, Joost H. M. Stassen, Oliver Berkowitz, James Whelan, David Roquis, Victoire Baillet, Vincent Colot, Frank Johannes, Jurriaan Ton
Software Mentions: 2
Published: almost 8 years ago

10.7554/eLife.62474

Integron activity accelerates the evolution of antibiotic resistance
Cited by: 39
Author(s): Célia Souque, José Antonio Escudero, R. Craig MacLean
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.09214

Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma
Cited by: 112
Author(s): Ana Rita Grosso, Ana Paula Leite, Sílvia Carvalho, Maria Margarida Nunes Gaspar de Matos, Filipa Martins, Alexandra C Vítor, Joana Desterro, Maria Carmo‐Fonseca, Sérgio Fernandes de Almeida
Software Mentions: 2
Published: almost 11 years ago

10.7554/eLife.53886

Systematic detection of horizontal gene transfer across genera among multidrug-resistant bacteria in a single hospital
Cited by: 68
Author(s): Daniel R. Evans, M. Patrick Griffith, Alexander Sundermann, Kathleen A. Shutt, Melissa Saul, Mustapha M. Mustapha, Jane W. Marsh, Vaughn S. Cooper, Lee H. Harrison, Daria Van Tyne
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.26036

Dynamics of genomic innovation in the unicellular ancestry of animals
Cited by: 113
Author(s): Xavier Grau‐Bové, Guifré Torruella, Stuart P. Donachie, Hiroshi Suga, Guy Leonard, Thomas A. Richards, Iñaki Ruiz‐Trillo
Software Mentions: 2
Published: over 9 years ago

10.3390/ijms160922258

Genomic Resources of Three Pulsatilla Species Reveal Evolutionary Hotspots, Species-Specific Sites and Variable Plastid Structure in the Family Ranunculaceae
Cited by: 24
Author(s): Monika Szczecińska, Jakub Sawicki
Software Mentions: 2
Published: about 11 years ago

10.3390/ijms161125951

Construction of the High-Density Genetic Linkage Map and Chromosome Map of Large Yellow Croaker (Larimichthys crocea)
Cited by: 26
Author(s): Jingqun Ao, Jia Li, Xinxin You, Yinnan Mu, Yang Ding, Kaiqiong Mao, Chao Bian, Pengfei Mu, Qiong Shi, Xinhua Chen
Software Mentions: 2
Published: almost 11 years ago

10.3390/ijms18081734

Genome-Wide Organization and Expression Profiling of the SBP-Box Gene Family in Chinese Jujube (Ziziphus jujuba Mill.)
Cited by: 25
Author(s): Shuang Song, Heng Zhou, Songbai Sheng, Mengshu Cao, Yingyue Li, Xiaoming Pang
Software Mentions: 2
Published: about 9 years ago

10.3390/ijms19020550

Expression of Pluripotency Genes in Chondrocyte-Like Cells Differentiated from Human Induced Pluripotent Stem Cells
Cited by: 5
Author(s): Ewelina Stelcer, Katarzyna Kulcenty, Marcin Ruciński, Karol Jopek, Tomasz Trzeciak, Magdalena Richter, Joanna Wróblewska, Wiktoria Maria Suchorska
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms19103246

Genome-Wide Characterization of the sHsp Gene Family in Salix suchowensis Reveals Its Functions under Different Abiotic Stresses
Cited by: 19
Author(s): Jianbo Li, Jin Zhang, Huixia Jia, Zhiqiang Yue, Mengzhu Lu, Xuebing Xin, Jianjun Hu
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms20010152

Complete Genome Sequence and Comparative Analysis of Synechococcus sp. CS-601 (SynAce01), a Cold-Adapted Cyanobacterium from an Oligotrophic Antarctic Habitat
Cited by: 24
Author(s): Jie Tang, Lianming Du, Yuanmei Liang, Maurycy Daroch
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms20194864

Genome-Wide Identification, Evolution, and Expression Analysis of RING Finger Gene Family in Solanum lycopersicum
Cited by: 15
Author(s): Liang Yang, Mingjun Miao, Hongjun Lyu, Xue Cao, Ju Li, Li YueJian, Zhi Li, Wei Chang
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms20215311

Comparative Genome-wide Analysis and Expression Profiling of Histone Acetyltransferase (HAT) Gene Family in Response to Hormonal Applications, Metal and Abiotic Stresses in Cotton
Cited by: 25
Author(s): Muhammad Imran, Sarfraz Shafiq, Muhammad Farooq, Muhammad Kashif Naeem, Émilie Widemann, Ali Bakhsh, Kevin B. Jensen, Richard R.‐C. Wang
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms20225796

Carotenoid Cleavage Dioxygenases: Identification, Expression, and Evolutionary Analysis of This Gene Family in Tobacco
Cited by: 24
Author(s): Qianqian Zhou, Qingchang Li, Peng Li, Songtao Zhang, Che Liu, Jingjing Jin, Peijian Cao, Yongxia Yang
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21010351

Systematic Analysis of the Maize OSCA Genes Revealing ZmOSCA Family Members Involved in Osmotic Stress and ZmOSCA2.4 Confers Enhanced Drought Tolerance in Transgenic Arabidopsis
Cited by: 24
Author(s): Liru Cao, Pengyu Zhang, LU Xin-shi, Guorui Wang, Zhenhua Wang, Qianjin Zhang, Xin Zhang, Xin Wei, Fujian Mei, Wei Li, Tongchao Wang
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21072580

A Tale of Two Families: Whole Genome and Segmental Duplications Underlie Glutamine Synthetase and Phosphoenolpyruvate Carboxylase Diversity in Narrow-Leafed Lupin (Lupinus angustifolius L.)
Cited by: 4
Author(s): Katarzyna B. Czyż, Michał Książkiewicz, Grzegorz Koczyk, Anna Szczepaniak, Jan Podkowiński, B. Naganowska
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21083015

Genome-Scale Analysis of Homologous Genes among Subgenomes of Bread Wheat (Triticum aestivum L.)
Cited by: 10
Author(s): Cai'e Zhou, Zhaonian Dong, Ting Zhang, Jianhui Wu, Shizhou Yu, Qingdong Zeng, Dejun Han, Wei Tong
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21114022

Novel Comprehensive Bioinformatics Approaches to Determine the Molecular Genetic Susceptibility Profile of Moderate and Severe Asthma
Cited by: 10
Author(s): Hatem Zayed
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21144905

Genome-Wide Identification and Expression Profile Analysis of the PHT1 Gene Family in Gossypium hirsutum and Its Two Close Relatives of Subgenome Donor Species
Cited by: 4
Author(s): Sheng Cai, Fujie Liu, Baoliang Zhou
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21155305

The Feasibility of Host Transcriptome Profiling as a Diagnostic Tool for Microbial Etiology in Childhood Cancer Patients with Febrile Neutropenia
Cited by: 11
Author(s): Martina Wahlund, Indranil Sinha, Kristina Broliden, Shanie Saghafian–Hedengren, Anna Nilsson, Anna Berggren
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21175987

Molecular Evolutionary and Expression Pattern Analysis of AKR Genes Shed New Light on GalUR Functional Characteristics in Brassica rapa
Cited by: 3
Author(s): Weike Duan, Zhinan Huang, Ying Liu, Xiaoming Song, Xiaochuan Sun, Can Jin, Yunpeng Wang, Jizhong Wang
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21218100

Genotypic and Phenotypic Changes in Candida albicans as a Result of Cold Plasma Treatment
Cited by: 5
Author(s): Ewa Tyczkowska-Sieroń, Tadeusz Kałużewski, Magdalena Grabiec, Bogdan Kaƚużewski, J. Tyczkowski
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms21217934

Molecular Mechanisms Underlying Sugarcane Response to Aluminum Stress by RNA-Seq
Cited by: 12
Author(s): Thiago Mateus Rosa-Santos, Renan Gonçalves da Silva, Poornasree Kumar, Pratibha Kottapalli, Chiquito J. Crasto, Kameswara Rao Kottapalli, Suzelei C. França, Sônia Marli Zingaretti
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22031044

Genome-Wide Identification and Characterization of Calcium-Dependent Protein Kinase (CDPK) and CDPK-Related Kinase (CRK) Gene Families in Medicago truncatula
Cited by: 16
Author(s): Peng Zhao, Huan Liu, Weiyi Kong, Jiayi Ji, Tianyu Cai, Zhenfei Guo
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22031146

Genomic Adaption and Mutational Patterns in a HaCaT Subline Resistant to Alkylating Agents and Ionizing Radiation
Cited by: 1
Author(s): Reinhard Ullmann, B Becker, Simone Rothmiller, Annette Schmidt, Horst Thiermann, Hanns Leonhard Kaatsch, Gerrit Schrock, J. W. Müller, Julia Jakobi, Richard Obermair, Matthias Port, Harry Scherthan
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22052665

A Genomic Blueprint of Flax Fungal Parasite Fusarium oxysporum f. sp. lini
Cited by: 6
Author(s): Anastasia Samsonova, Alexander Kanapin, Mikhail Bankin, Anton Logachev, Maria Gretsova, Tatiana A. Rozhmina, Maria Samsonova
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22105291

Genome-Wide Analysis of nsLTP Gene Family and Identification of SiLTPs Contributing to High Oil Accumulation in Sesame (Sesamum indicum L.)
Cited by: 17
Author(s): Shengnan Song, Jun You, Lisong Shi, Sheng Chen, Wangyi Zhou, Senouwa Segla Koffi Dossou, Komivi Dossa, Linhai Wang
Software Mentions: 2
Published: over 5 years ago

10.2196/10297

Exploring Genetic Data Across Individuals: Design and Evaluation of a Novel Comparative Report Tool
Cited by: 6
Author(s): Lauren Westendorf, Orit Shaer, Christina Pollalis, Clarissa Verish, Oded Nov, Mad Price Ball
Software Mentions: 2
Published: about 8 years ago

10.18632/oncotarget.11553

Numb-like (NumbL) downregulation increases tumorigenicity, cancer stem cell-like properties and resistance to chemotherapy
Cited by: 37
Author(s): José Manuel García-Heredia, Eva M. Verdugo‐Sivianes, Antonio Lucena-Cacace, Sonia Molina-Pinelo, Amancio Carnero
Software Mentions: 2
Published: about 10 years ago

10.18632/oncotarget.12848

Co-existence of <i>BRAF</i> and <i>NRAS</i> driver mutations in the same melanoma cells results in heterogeneity of targeted therapy resistance
Cited by: 61
Author(s): Marieke I.G. Raaijmakers, Daniel Widmer, Apurva Narechania, Ossia M. Eichhoff, Sandra N. Freiberger, Judith Wenzina, Phil F. Cheng, Daniela Mihic‐Probst, Rob DeSalle, Reinhard Dummer, Mitchell P. Levesque
Software Mentions: 2
Published: almost 10 years ago

10.18632/oncotarget.22111

Coordinated downregulation of Spinophilin and the catalytic subunits of PP1, PPP1CA/B/C, contributes to a worse prognosis in lung cancer
Cited by: 14
Author(s): Eva M. Verdugo‐Sivianes, Lola E. Navas, Sonia Molina-Pinelo, Irene Ferrer, Álvaro Quintanal-Villalonga, J. Peinado, José Manuel García-Heredia, Blanca Felipe‐Abrio, Sandra Muñoz-Galván, Juan Marín, Luis M. Montuenga, Luís Paz-Ares, Amancio Carnero
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.22769

Identify clear cell renal cell carcinoma related genes by gene network
Cited by: 2
Author(s): Fangrong Yan, Yue Wang, Chunhui Liu, Hang Zhao, Liya Zhang, Xiaofan Lu, Chen Chen, Yaoyan Wang, Tao Lü, Fei Wang
Software Mentions: 2
Published: almost 9 years ago

10.18632/oncotarget.10611

Impact of DLK1-DIO3 imprinted cluster hypomethylation in smoker patients with lung cancer
Cited by: 35
Author(s): Sonia Molina-Pinelo, Ana Salinas, Nicolás Moreno-Mata, Irene Ferrer, Rocío Suárez, Eduardo Andrés-León, Manuel Rodríguez-Paredes, Julian Gutekunst, Eloísa Jantus‐Lewintre, Carlos Camps, Amancio Carnero, Luís Paz-Ares
Software Mentions: 2
Published: over 10 years ago

10.3390/jpm11050362

The Usefulness of Cell-Based and Liquid-Based Urine Tests in Clarifying the Diagnosis and Monitoring the Course of Urothelial Carcinoma. Identification of Novel, Potentially Actionable, RB1 and ERBB2 Somatic Mutations
Cited by: 0
Author(s): Tadeusz Kałużewski, Grzegorz K. Przybylski, Michał Bednarek, Sławomir Glazar, Magdalena Grabiec, Adam Jędrzejczyk, Łukasz Kępczyński, Izabela Kubiak, Dorota Kucharska, Agnieszka Morel, Magdalena Owczarek, Marek Rożniecki, Jordan Sałamunia, Dominika Szewczyk, Jarosław Szwalski, Bogdan Kaƚużewski
Software Mentions: 2
Published: over 5 years ago

10.1155/2021/5537804

Dynamic Patterns of N6-Methyladenosine Profiles of Messenger RNA Correlated with the Cardiomyocyte Regenerability during the Early Heart Development in Mice
Cited by: 11
Author(s): Yuhui Yang, Siman Shen, Yin Cai, Ke Zeng, Keyu Liu, Simeng Li, Lanfen Zeng, Linming Chen, Jing Tang, Zhe Hu, Zhengyuan Xia, Liangqing Zhang
Software Mentions: 2
Published: about 5 years ago

10.1523/ENEURO.0101-20.2020

Resolving the Connectome, Spectrally-Specific Functional Connectivity Networks and Their Distinct Contributions to Behavior
Cited by: 7
Author(s): Robert Becker, Alexis Hervais-Adelman
Software Mentions: 2
Published: about 6 years ago

10.1128/mBio.01169-14

Relaxed Selection Drives a Noisy Noncoding Transcriptome in Members of the Mycobacterium tuberculosis Complex
Cited by: 15
Author(s): Adam M. Dinan, Pin Tong, Amanda J. Lohan, Kevin M. Conlon, Aleksandra A. Miranda-CasoLuengo, Kerri M. Malone, Stephen V. Gordon, Brendan J. Loftus
Software Mentions: 1
Published: about 12 years ago

10.1186/s12889-016-3630-8

The double burden of disease among mining workers in Papua, Indonesia: at the crossroads between Old and New health paradigms
Cited by: 15
Author(s): Rodrigo Rodríguez-Fernández, Nawi Ng, Dwidjo Susilo, John Prawira, Michael J. Bangs, Rachel M. Amiya
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0122369

Molecular Characterization of a Multidrug Resistance IncF Plasmid from the Globally Disseminated Escherichia coli ST131 Clone
Cited by: 44
Author(s): Minh-Duy Phan, Brian M. Forde, Kate M. Peters, Sohinee Sarkar, Steven J. Hancock, Mitchell Stanton-Cook, Nouri L. Ben Zakour, Mathew Upton, Scott A. Beatson, Mark A. Schembri
Software Mentions: 1
Published: over 11 years ago

10.1128/mBio.00699-16

Archaeal<i>Haloarcula californiae</i>Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments
Cited by: 15
Author(s): Tatiana A. Demina, Maija K. Pietilä, Julija Svirskaitė, Janne J. Ravantti, Nina S. Atanasova, Dennis H. Bamford, Hanna M. Oksanen
Software Mentions: 1
Published: about 10 years ago

10.1186/1753-6561-6-S6-P37

AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations
Cited by: 3
Author(s): Hue Vuong, Robert M. Stephens, Natalia Volfovsky
Software Mentions: 1
Published: about 14 years ago

10.1007/s00253-016-7924-7

The temperate Burkholderia phage AP3 of the Peduovirinae shows efficient antimicrobial activity against B. cenocepacia of the IIIA lineage
Cited by: 10
Author(s): Bartosz Roszniowski, Agnieszka Łątka, Barbara Maciejewska, Dieter Vandenheuvel, Tomasz Olszak, Yves Briers, Giles Holt, Miguel A. Valvano, Rob Lavigne, Darren Smith, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2164-13-711

An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2
Cited by: 27
Author(s): Jaemin Kim, Taeheon Lee, Tae-Hun Kim, Kyung-Tai Lee, Heebal Kim
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0149529

Full Genome Sequence-Based Comparative Study of Wild-Type and Vaccine Strains of Infectious Laryngotracheitis Virus from Italy
Cited by: 20
Author(s): Alessandra Piccirillo, Enrico Lavezzo, Giulia Niero, Ana Moreno, Paola Massi, Elisa Franchin, Stefano Toppo, Cristiano Salata, Giorgio Palù
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0188371

Genomic features of “Candidatus Venteria ishoeyi”, a new sulfur-oxidizing macrobacterium from the Humboldt Sulfuretum off Chile
Cited by: 11
Author(s): Alexis Fonseca, Thomas Ishoey, Claudia Espinoza, Danilo Pérez‐Pantoja, Antonio Manghisi, Marina Morabito, Alexis Salas-Burgos, Víctor A. Gallardo
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0144881

A Longitudinal Study of the Feline Faecal Microbiome Identifies Changes into Early Adulthood Irrespective of Sexual Development
Cited by: 49
Author(s): Oliver Deusch, Ciaran O’Flynn, Alison Colyer, Kelly S. Swanson, David Allaway, Penelope J. Morris
Software Mentions: 1
Published: almost 11 years ago

10.1186/1753-6561-6-S6-P17

Mining cancer genomes in COSMIC
Cited by: 1
Author(s): Mingming Jia, Simon Forbes, David Beare, Nidhi Bindal, Prasad Gunasekaran, Kenric Leung, Chai Yin Kok, Sally Bamford, Charlotte G. Cole, Sari Ward, Jon W. Teague, Michael R. Stratton, Peter J. Campbell, Andrew Futreal
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0054844

Genome Analysis and Phylogenetic Relatedness of Gallibacterium anatis Strains from Poultry
Cited by: 32
Author(s): Timothy J. Johnson, Jessica L. Danzeisen, Darrell W. Trampel, Lisa K. Nolan, Torsten Seemann, Ragnhild J. Bager, Anders Miki Bojesen
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-019-5677-2

New insights into the genome of Rhodococcus ruber strain Chol-4
Cited by: 18
Author(s): Govinda Guevara, María Castillo López, Sergio Alonso, Julián Perera, Juana María Navarro Lloréns
Software Mentions: 1
Published: over 7 years ago

10.1007/s00253-016-7928-3

Klebsiella phages representing a novel clade of viruses with an unknown DNA modification and biotechnologically interesting enzymes
Cited by: 42
Author(s): Barbara Maciejewska, Bartosz Roszniowski, Akbar Espaillat, Agata Kęsik-Szeloch, Grażyna Majkowska-Skrobek, Andrew M. Kropinski, Yves Briers, Felipe Cava, Rob Lavigne, Zuzanna Drulis-Kawa
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0132120

Targeted Sequencing Reveals Large-Scale Sequence Polymorphism in Maize Candidate Genes for Biomass Production and Composition
Cited by: 28
Author(s): Moses M. Muraya, Thomas Schmutzer, Chris Ulpinnis, Uwe Scholz, Thomas Altmann
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0037454

Mapping Connectivity Damage in the Case of Phineas Gage
Cited by: 136
Author(s): John D. Van Horn, Andrei Irimia, Carinna M. Torgerson, Micah C. Chambers, Ron Kikinis, Arthur W. Toga
Software Mentions: 1
Published: over 14 years ago

10.1186/s12864-015-1397-4

A genetic map of cassava (Manihot esculenta Crantz) with integrated physical mapping of immunity-related genes
Cited by: 51
Author(s): Johana Carolina Soto, Jorge Ortíz, Laura Perlaza-Jiménez, Andrea Vásquez, Luis Augusto Becerra López-Lavalle, Boby Mathew, Jens Léon, Adriana Bernal, Agim Ballvora, Camilo López
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0081843

Candidate Luminal B Breast Cancer Genes Identified by Genome, Gene Expression and DNA Methylation Profiling
Cited by: 51
Author(s): Stéphanie Cornen, Arnaud Guillé, José Adélaı̈de, Lynda Addou-Klouche, Pascal Finetti, Marie-Rose Saade, Maroua Manai, Nadine Carbuccia, Ismahane Bekhouche, A Letessier, Stéphane Raynaud, Emmanuelle Charafe-Jauffret, Jocelyne Jacquemier, Salvatore Spicuglia, Hugues de Thé, Patrice Viens, François Bertucci, Daniel Birnbaum, Max Chaffanet
Software Mentions: 1
Published: almost 13 years ago

10.3390/ijms22179651

Genome-Wide Identification and Analysis of the Metallothionein Genes in Oryza Genus
Cited by: 6
Author(s): Ming Huei Cheng, Huanran Yuan, Ruihua Wang, Jianing Zou, Ting Liang, Fang Yang, Shaoqing Li
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0161292

Using Dendritic Heat Maps to Simultaneously Display Genotype Divergence with Phenotype Divergence
Cited by: 8
Author(s): Matthew Kellom, Jason Raymond
Software Mentions: 1
Published: about 10 years ago

10.1186/s12870-021-03184-2

Genome-wide analysis of OSCA gene family members in Vigna radiata and their involvement in the osmotic response
Cited by: 17
Author(s): Lili Yin, Meiling Zhang, Ruigang Wu, Xiaoliang Chen, Fei Liu, Xing Bao-long
Software Mentions: 1
Published: about 5 years ago

10.1186/s12870-019-1957-x

Genome-wide identification and expression analysis of the trihelix transcription factor family in tartary buckwheat (Fagopyrum tataricum)
Cited by: 26
Author(s): Zhaotang Ma, Moyang Liu, Wenjun Sun, Li Huang, Qi Wu, Tongliang Bu, Chenglei Li, Hui Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12870-014-0253-z

The plasticity of NBS resistance genes in sorghum is driven by multiple evolutionary processes
Cited by: 47
Author(s): Emma Mace, Shuaishuai Tai, David J. Innes, Ian D. Godwin, Wushu S. Hu, Bradley C. Campbell, Edward K. Gilding, Alan Cruickshank, Peter J. Prentis, Jun Wang, David R. Jordan
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0163315

Transcriptome Profiling of the Pineapple under Low Temperature to Facilitate Its Breeding for Cold Tolerance
Cited by: 21
Author(s): Chengjie Chen, Yafeng Zhang, Zhiqiang Xu, Aiping Luan, Qi Mao, Junting Feng, Tongxin Xie, Xue Gong, Xiaoshuang Wang, Hao Chen, Yehua He
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms22189862

Identification of FadT as a Novel Quorum Quenching Enzyme for the Degradation of Diffusible Signal Factor in Cupriavidus pinatubonensis Strain HN-2
Cited by: 5
Author(s): Xudan Xu, Yongsheng Tian, Wenping Zhang, Tianxing Zhou, Xin Zhou, Weigang Dai, Shaohua Chen
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0113092

Genome-Wide Investigation and Expression Profiling of AP2/ERF Transcription Factor Superfamily in Foxtail Millet (Setaria italica L.)
Cited by: 137
Author(s): Charu Lata, Awdhesh Kumar Mishra, Mehanathan Muthamilarasan, Venkata Suresh Bonthala, Yusuf Khan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0164815

Collinearity Analysis and High-Density Genetic Mapping of the Wheat Powdery Mildew Resistance Gene Pm40 in PI 672538
Cited by: 11
Author(s): Shengyi Zhong, Li-na Ma, Syeda Akash Fatima, Jiezhi Yang, Wanquan Chen, Taiguo Liu, Yuting Hu, Qing Li, Jungang Guo, Min Zhang, Lei Li, Xin Li, Shengwen Tang, Peigao Luo
Software Mentions: 1
Published: about 10 years ago

10.1128/mBio.01803-20

<i>In Vivo</i> Genome and Methylome Adaptation of <i>cag</i> -Negative Helicobacter pylori during Experimental Human Infection
Cited by: 12
Author(s): Iratxe Estibariz, Florent Ailloud, Sabrina Woltemate, Boyke Bunk, Cathrin Spröer, Jörg Overmann, Toni Aebischer, Thomas F. Meyer, Christine Josenhans, Sebastian Suerbaum
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-019-1760-8

Genome-wide analyses and expression patterns under abiotic stress of NAC transcription factors in white pear (Pyrus bretschneideri)
Cited by: 37
Author(s): Xin Gong, Liangyi Zhao, Xiaofei Song, Zekun Lin, Bingjie Gu, Jinxuan Yan, Shaoling Zhang, Shutian Tao, Xiaosan Huang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12870-020-02752-2

Genome-wide identification, phylogenetic and expression pattern analysis of GATA family genes in Brassica napus
Cited by: 25
Author(s): Weizhuo Zhu, Yiyi Guo, Yeke Chen, Dezhi Wu, Lixi Jiang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0072182

Breakpoint Features of Genomic Rearrangements in Neuroblastoma with Unbalanced Translocations and Chromothripsis
Cited by: 40
Author(s): Valentina Boeva, Stéphanie Jouannet, Romain Daveau, Valérie Combaret, Cécile Pierre-Eugène, Alex Cazes, Caroline Louis‐Brennetot, Gudrun Schleiermacher, Sandrine Ferrand, Gaëlle Pierron, Alban Lermine, Thomas Rio Frio, Virginie Raynal, Gilles Vassal, Emmanuel Barillot, Olivier Delattre, Isabelle Janoueix‐Lerosey
Software Mentions: 1
Published: about 13 years ago

10.1186/s12870-018-1454-7

Characterization and subcellular localization of histone deacetylases and their roles in response to abiotic stresses in soybean
Cited by: 33
Author(s): Chao Yang, Wenjin Shen, Hongfeng Chen, Liutian Chu, Xu Yang, Xiaochen Zhou, Chuanliang Liu, Chunmiao Chen, Jiahui Zeng, Jin Liu, Qianfeng Li, Caiji Gao, Jean‐Benoît Charron, Ming Luo
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2229-12-139

Genome-wide mapping of NBS-LRR genes and their association with disease resistance in soybean
Cited by: 133
Author(s): Yang Jae Kang, Kil Hyun Kim, Sangrea Shim, Min Young Yoon, Shufeng Sun, Moon Young Kim, Kyujung Van, Suk-Ha Lee
Software Mentions: 1
Published: about 14 years ago

10.3390/ijms221810056

Identification and Characterization of Novel circRNAs Involved in Muscle Growth of Blunt Snout Bream (Megalobrama amblycephala)
Cited by: 3
Author(s): Lifang Liu, Yulong Chen, Jinghan Diao, Le Luo, Zexia Gao
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0185545

The mitochondrial genome of the plant-pathogenic fungus Stemphylium lycopersici uncovers a dynamic structure due to repetitive and mobile elements
Cited by: 34
Author(s): Mario Emilio Ernesto Franco, Silvina Marianela Yanil López, Rocío Medina, César Gustavo Lucentini, María Inés Troncozo, Graciela N. Pastorino, Mario Carlos Nazareno Saparrat, Pedro Alberto Balatti
Software Mentions: 1
Published: about 9 years ago

10.1186/s12870-018-1230-8

Calcium-dependent protein kinases in cotton: insights into early plant responses to salt stress
Cited by: 67
Author(s): Wei Gao, Fuchun Xu, Dandan Guo, Jing-Ruo Zhao, Liu Ji, Yawei Guo, Prashant Kumar Singh, Xiaonan Ma, Lu Long, José Ramón Botella, Chun‐Peng Song
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-019-1891-y

Genome-wide identification and functional analysis of oleosin genes in Brassica napus L.
Cited by: 23
Author(s): Kang Chen, Yuping Yin, Si Liu, Zhenyi Guo, Kai Zhang, Liang Yu, Lina Zhang, Weiguo Zhao, Hongbo Chao, Maoteng Li
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0124071

Whole-Genome Resequencing and Transcriptomic Analysis to Identify Genes Involved in Leaf-Color Diversity in Ornamental Rice Plants
Cited by: 12
Author(s): Chang-Kug Kim, Young-Joo Seol, Younhee Shin, Hyemin Lim, Gang-Seob Lee, Aram Kim, Tae‐Ho Lee, Jaehee Lee, Dong-Suk Park, Seung-il Yoo, Yonghwan Kim, Yong-Kab Kim
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0059562

Genome-Wide Characterization and Linkage Mapping of Simple Sequence Repeats in Mei (Prunus mume Sieb. et Zucc.)
Cited by: 38
Author(s): Lidan Sun, Weiru Yang, Qixiang Zhang, Tangren Cheng, Huitang Pan, Zongda Xu, Jie Zhang, Chuguang Chen
Software Mentions: 1
Published: over 13 years ago

10.1186/s12870-020-02740-6

Global analysis of the AP2/ERF gene family in rose (Rosa chinensis) genome unveils the role of RcERF099 in Botrytis resistance
Cited by: 20
Author(s): Dandan Li, Xintong Liu, Li-Zhe Shu, Hua Zhang, Shiya Zhang, Yin Song, Zhao Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-020-02620-z

Genome-wide survey, characterization, and expression analysis of bZIP transcription factors in Chenopodium quinoa
Cited by: 12
Author(s): Feng Li, Jianxia Liu, Xuhu Guo, Lili Yin, Hongli Zhang, Rong Wen
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0248182

Complete chloroplast genomes of Impatiens cyanantha and Impatiens monticola: Insights into genome structures, mutational hotspots, comparative and phylogenetic analysis with its congeneric species
Cited by: 7
Author(s): Chen Luo, Li Yang, Roshani Budhathoki, Jiyuan Shi, Huseyin Yer, Xinyi Li, Bo Yan, Qiong Wang, Yonghui Wen, Meijuan Huang, Haiquan Huang
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-15-187

Paleo-evolutionary plasticity of plant disease resistance genes
Cited by: 47
Author(s): Rongzhi Zhang, Florent Murat, Caroline Pont, Thierry Langin, Jérôme Salse
Software Mentions: 1
Published: over 12 years ago

10.1186/s12870-018-1265-x

The mining and evolutionary investigation of AP2/ERF genes in pear (Pyrus)
Cited by: 39
Author(s): Xiaolong Li, Shutian Tao, Shuwei Wei, Meiling Ming, Xiaosan Huang, Shaoling Zhang, Xiaolong Li
Software Mentions: 1
Published: over 8 years ago

10.1128/mBio.00965-21

ESX-1-Independent Horizontal Gene Transfer by Mycobacterium tuberculosis Complex Strains
Cited by: 10
Author(s): Jan Madacki, Mickael Orgeur, Guillem Mas Fiol, Wafa Frigui, Laurence Ma, Roland Brosch
Software Mentions: 1
Published: over 5 years ago

10.1128/mSphere.00326-16

A Novel Protective Vaccine Antigen from the Core Escherichia coli Genome
Cited by: 33
Author(s): Danilo Gomes Moriel, Lendl Tan, Kelvin G. K. Goh, Minh-Duy Phan, Deepak S. Ipe, Alvin W. Lo, Kate M. Peters, Glen C. Ulett, Scott A. Beatson, Mark A. Schembri
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0109101

Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank)
Cited by: 18
Author(s): Kyriakos Tsangaras, Nathan Wales, Thomas Sicheritz-Pontén, Simon Rasmussen, Johan Michaux, Yasuko Ishida, Serge Morand, Marie-Louise Kampmann, M. Thomas P. Gilbert, Alex D. Greenwood
Software Mentions: 1
Published: about 12 years ago

10.1186/s12864-016-3462-z

Construction of high-resolution recombination maps in Asian seabass
Cited by: 27
Author(s): Le Wang, Bin Bai, Peng Liu, Shu Qing Huang, Zi Yi Wan, Elaine Chua, Baoqing Ye, Gen Hua Yue
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0076757

BAC-Pool Sequencing and Analysis of Large Segments of A12 and D12 Homoeologous Chromosomes in Upland Cotton
Cited by: 6
Author(s): Ramesh Buyyarapu, Ramesh V. Kantety, John Z. Yu, Zhanyou Xu, R. J. Kohel, Richard G. Percy, Simone Macmil, Graham B. Wiley, Bruce A. Roe, Govind C. Sharma
Software Mentions: 1
Published: about 13 years ago

10.1128/mSphere.00018-19

Characterizing the Pathogenic, Genomic, and Chemical Traits of <i>Aspergillus fischeri</i> , a Close Relative of the Major Human Fungal Pathogen <i>Aspergillus fumigatus</i>
Cited by: 36
Author(s): Matthew E. Mead, Sonja L. Knowles, Huzefa A. Raja, Sarah R Beattie, Caitlin H. Kowalski, Jacob L. Steenwyk, Lilian Pereira Silva, Jéssica Chiaratto, Laure Nicolas Annick Ries, Gustavo H. Goldman, Robert A. Cramer, Nicholas H. Oberlies, Antonis Rokas
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0117771

Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan
Cited by: 56
Author(s): Asho Ali, Zahra Hasan, Ruth McNerney, Kim Mallard, Grant A. Hill-Cawthorne, Francesc Español i Coll, Mridul Nair, Arnab Pain, Taane G. Clark, Rumina Hasan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0101108

Australian Sphingidae – DNA Barcodes Challenge Current Species Boundaries and Distributions
Cited by: 36
Author(s): Rodolphe Rougerie, Ian J. Kitching, J. Haxaire, Scott E. Miller, Axel Hausmann, Paul D. N. Hebert
Software Mentions: 1
Published: over 12 years ago

10.1128/mSphere.00807-19

Discovery of Bat Coronaviruses through Surveillance and Probe Capture-Based Next-Generation Sequencing
Cited by: 71
Author(s): Bei Li, Rui Hao, Yan Zhu, Xing Yang, Danielle E. Anderson, Zheng Li Shi, Lin‐Fa Wang, Peng Zhou
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0099213

A Survey of Innovation through Duplication in the Reduced Genomes of Twelve Parasites
Cited by: 8
Author(s): Jeremy D. DeBarry, Jessica C. Kissinger
Software Mentions: 1
Published: over 12 years ago

10.1186/s12870-018-1519-7

Discovery and annotation of a novel transposable element family in Gossypium
Cited by: 5
Author(s): Hejun Lu, Xinglei Cui, Zhen Liu, Yuling Liu, Xingxing Wang, Zhongli Zhou, Xiaoyan Cai, Zhenmei Zhang, Xuewu Guo, Jinping Hua, Zhiying Ma, Xiyin Wang, Jinfa Zhang, Hong Zhang, Fang Liu, Kunbo Wang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0205519

Location-dependent effects of trauma on oxidative stress in humans
Cited by: 4
Author(s): Luis Serviá, José C. E. Serrano, Reinald Pamplona, Mariona Badía, Neus Montserrat, Manuel Portero‐Otín, Javier Ortiz-Echagüe Trujillano
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0187341

BioVis Explorer: A visual guide for biological data visualization techniques
Cited by: 25
Author(s): Andreas Kerren, Kostiantyn Kucher, Yuan Fang Li, Falk Schreiber
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0199323

In silico and ex vivo approaches indicate immune pressure on capsid and non-capsid regions of coxsackie B viruses in the human system
Cited by: 5
Author(s): Ritu Kundu, Robin R. Knight, Meenakshi Dunga, Mark Peakman
Software Mentions: 1
Published: over 8 years ago

10.1128/mSystems.00190-16

Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms
Cited by: 24
Author(s): Scott V. Nguyen, Gregory P. Harhay, James L. Bono, Timothy P. L. Smith, Dayna M. Harhay
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-017-3822-3

Genome-wide sequence variations between wild and cultivated tomato species revisited by whole genome sequence mapping
Cited by: 22
Author(s): Kamlesh Kumar Sahu, Debasis Chattopadhyay
Software Mentions: 1
Published: over 9 years ago