Ecosyste.ms: Papers

10.1038/s41598-021-83602-5

Metabolomic differences between critically Ill women and men
Cited by: 7
Author(s): Sowmya Chary, Karin Amrein, Jessica Lasky‐Su, Harald Dobnig, Kenneth B. Christopher
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-83882-x

Altered metabolic and inflammatory transcriptomics after cardiac surgery in neonates with congenital heart disease
Cited by: 3
Author(s): Parag Jain, Matthew J. Robertson, Javier J. Lasa, Lara Shekerdemian, Danielle Guffey, Yuhao Zhang, Krithika Lingappan, Paul A. Checchia, Cristian Coarfa
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-86176-4

Genetic basis and identification of candidate genes for wooden breast and white striping in commercial broiler chickens
Cited by: 22
Author(s): Juniper A. Lake, Jack C. M. Dekkers, Behnam Abasht
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-86259-2

Meta-QTL and ortho-MQTL analyses identified genomic regions controlling rice yield, yield-related traits and root architecture under water deficit conditions
Cited by: 35
Author(s): Bahman Khahani, Elahe Tavakol, Vahid Shariati, Laura Rossini
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-88924-y

Metastasis is altered through multiple processes regulated by the E2F1 transcription factor
Cited by: 3
Author(s): Matthew Swiatnicki, Eran R. Andrechek
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-89211-6

Genome-wide identification and expression pattern analysis of lipoxygenase gene family in banana
Cited by: 19
Author(s): Fan Liu, Hua Li, Junwei Wu, Bin Wang, Na Tian, Jiapeng Liu, Xiao Sun, Huan Wu, Yuji Huang, Peitao Lü, Chunzhen Cheng
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-90685-7

Genome-wide analysis of RING-type E3 ligase family identifies potential candidates regulating high amylose starch biosynthesis in wheat (Triticum aestivum L.)
Cited by: 8
Author(s): Afsana Parveen, Mohammed Saba Rahim, Ankita Sharma, Ankita Mishra, Praveen Kumar, Vikas Fandade, Pankaj Kumar, Abhishek Bhandawat, Shreya Verma, Joy Roy
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-93257-x

Sequencing an F1 hybrid of Silurus asotus and S. meridionalis enabled the assembly of high-quality parental genomes
Cited by: 3
Author(s): Weitao Chen, Ming Zou, Yuefei Li, Shuli Zhu, Xinhui Li, Jie Li
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94545-2

Dissecting the chromosome-level genome of the Asian Clam (Corbicula fluminea)
Cited by: 2
Author(s): Tongqing Zhang, Jiawen Yin, Shengkai Tang, Daming Li, Xiankun Gu, Shengyu Zhang, Weiguo Suo, Xiaowei Liu, Yanshan Liu, Qichen Jiang, Muzi Zhao, Yue Yin, Jianlin Pan
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-94649-9

Characterizing chloroplast genomes and inferring maternal divergence of the Triticum–Aegilops complex
Cited by: 6
Author(s): Yong‐Bi Fu
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-98184-5

The complete genome of 2,6-dichlorobenzamide (BAM) degrader Aminobacter sp. MSH1 suggests a polyploid chromosome, phylogenetic reassignment, and functions of plasmids
Cited by: 5
Author(s): Tue Kjærgaard Nielsen, Benjamin Horemans, Cédric Lood, Jeroen T’Syen, Vera van Noort, Rob Lavigne, Lea Ellegaard-Jensen, Ole Hylling, Jens Aamand, Dirk Springael, Lars Hestbjerg Hansen
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-98804-0

Determining the immune environment of cutaneous T-cell lymphoma lesions through the assessment of lesional blood drops
Cited by: 2
Author(s): Kan Torii, Yukinori Okada, Akimichi Morita
Software Mentions: 2
Published: about 3 years ago

10.1186/s40064-016-3543-0

Identification of mutations, gene expression changes and fusion transcripts by whole transcriptome RNAseq in docetaxel resistant prostate cancer cells
Cited by: 14
Author(s): Yuanjun Ma, Yong Miao, Zhuochun Peng, Johanna Sandgren, Teresita Díaz de Ståhl, Mikael Huss, Lena Lennartsson, Yanling Liu, Monica Nistér, Sten Nilsson, Chunde Li
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms19103246

Genome-Wide Characterization of the sHsp Gene Family in Salix suchowensis Reveals Its Functions under Different Abiotic Stresses
Cited by: 19
Author(s): Jianbo Li, Jin Zhang, Huixia Jia, Zhiqiang Yue, Mengzhu Lu, Xuebing Xin, Jianjun Hu
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms20010152

Complete Genome Sequence and Comparative Analysis of Synechococcus sp. CS-601 (SynAce01), a Cold-Adapted Cyanobacterium from an Oligotrophic Antarctic Habitat
Cited by: 24
Author(s): Jie Tang, Lianming Du, Yuanmei Liang, Maurycy Daroch
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms20194864

Genome-Wide Identification, Evolution, and Expression Analysis of RING Finger Gene Family in Solanum lycopersicum
Cited by: 15
Author(s): Liang Yang, Mingjun Miao, Hongjun Lyu, Xue Cao, Ju Li, Li YueJian, Zhi Li, Wei Chang
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms20215311

Comparative Genome-wide Analysis and Expression Profiling of Histone Acetyltransferase (HAT) Gene Family in Response to Hormonal Applications, Metal and Abiotic Stresses in Cotton
Cited by: 25
Author(s): Muhammad Imran, Sarfraz Shafiq, Muhammad Farooq, Muhammad Kashif Naeem, Émilie Widemann, Ali Bakhsh, Kevin B. Jensen, Richard R.‐C. Wang
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms20225796

Carotenoid Cleavage Dioxygenases: Identification, Expression, and Evolutionary Analysis of This Gene Family in Tobacco
Cited by: 24
Author(s): Qianqian Zhou, Qingchang Li, Peng Li, Songtao Zhang, Che Liu, Jingjing Jin, Peijian Cao, Yongxia Yang
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21010351

Systematic Analysis of the Maize OSCA Genes Revealing ZmOSCA Family Members Involved in Osmotic Stress and ZmOSCA2.4 Confers Enhanced Drought Tolerance in Transgenic Arabidopsis
Cited by: 24
Author(s): Liru Cao, Pengyu Zhang, LU Xin-shi, Guorui Wang, Zhenhua Wang, Qianjin Zhang, Xin Zhang, Xin Wei, Fujian Mei, Wei Li, Tongchao Wang
Software Mentions: 2
Published: almost 5 years ago

10.3390/ijms21072580

A Tale of Two Families: Whole Genome and Segmental Duplications Underlie Glutamine Synthetase and Phosphoenolpyruvate Carboxylase Diversity in Narrow-Leafed Lupin (Lupinus angustifolius L.)
Cited by: 4
Author(s): Katarzyna B. Czyż, Michał Książkiewicz, Grzegorz Koczyk, Anna Szczepaniak, Jan Podkowiński, B. Naganowska
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21083015

Genome-Scale Analysis of Homologous Genes among Subgenomes of Bread Wheat (Triticum aestivum L.)
Cited by: 10
Author(s): Cai'e Zhou, Zhaonian Dong, Ting Zhang, Jianhui Wu, Shizhou Yu, Qingdong Zeng, Dejun Han, Wei Tong
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21114022

Novel Comprehensive Bioinformatics Approaches to Determine the Molecular Genetic Susceptibility Profile of Moderate and Severe Asthma
Cited by: 10
Author(s): Hatem Zayed
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21144905

Genome-Wide Identification and Expression Profile Analysis of the PHT1 Gene Family in Gossypium hirsutum and Its Two Close Relatives of Subgenome Donor Species
Cited by: 4
Author(s): Sheng Cai, Fujie Liu, Baoliang Zhou
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21155305

The Feasibility of Host Transcriptome Profiling as a Diagnostic Tool for Microbial Etiology in Childhood Cancer Patients with Febrile Neutropenia
Cited by: 11
Author(s): Martina Wahlund, Indranil Sinha, Kristina Broliden, Shanie Saghafian–Hedengren, Anna Nilsson, Anna Berggren
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21175987

Molecular Evolutionary and Expression Pattern Analysis of AKR Genes Shed New Light on GalUR Functional Characteristics in Brassica rapa
Cited by: 3
Author(s): Weike Duan, Zhinan Huang, Ying Liu, Xiaoming Song, Xiaochuan Sun, Can Jin, Yunpeng Wang, Jizhong Wang
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms21218100

Genotypic and Phenotypic Changes in Candida albicans as a Result of Cold Plasma Treatment
Cited by: 5
Author(s): Ewa Tyczkowska-Sieroń, Tadeusz Kałużewski, Magdalena Grabiec, Bogdan Kaƚużewski, J. Tyczkowski
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms21217934

Molecular Mechanisms Underlying Sugarcane Response to Aluminum Stress by RNA-Seq
Cited by: 12
Author(s): Thiago Mateus Rosa-Santos, Renan Gonçalves da Silva, Poornasree Kumar, Pratibha Kottapalli, Chiquito J. Crasto, Kameswara Rao Kottapalli, Suzelei C. França, Sônia Marli Zingaretti
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms22031044

Genome-Wide Identification and Characterization of Calcium-Dependent Protein Kinase (CDPK) and CDPK-Related Kinase (CRK) Gene Families in Medicago truncatula
Cited by: 16
Author(s): Peng Zhao, Huan Liu, Weiyi Kong, Jiayi Ji, Tianyu Cai, Zhenfei Guo
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms22031146

Genomic Adaption and Mutational Patterns in a HaCaT Subline Resistant to Alkylating Agents and Ionizing Radiation
Cited by: 1
Author(s): Reinhard Ullmann, B Becker, Simone Rothmiller, Annette Schmidt, Horst Thiermann, Hanns Leonhard Kaatsch, Gerrit Schrock, J. W. Müller, Julia Jakobi, Richard Obermair, Matthias Port, Harry Scherthan
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms22052665

A Genomic Blueprint of Flax Fungal Parasite Fusarium oxysporum f. sp. lini
Cited by: 6
Author(s): Anastasia Samsonova, Alexander Kanapin, Mikhail Bankin, Anton Logachev, Maria Gretsova, Tatiana A. Rozhmina, Maria Samsonova
Software Mentions: 2
Published: over 3 years ago

10.3390/ijms22105291

Genome-Wide Analysis of nsLTP Gene Family and Identification of SiLTPs Contributing to High Oil Accumulation in Sesame (Sesamum indicum L.)
Cited by: 17
Author(s): Shengnan Song, Jun You, Lisong Shi, Sheng Chen, Wangyi Zhou, Senouwa Segla Koffi Dossou, Komivi Dossa, Linhai Wang
Software Mentions: 2
Published: over 3 years ago

10.2196/10297

Exploring Genetic Data Across Individuals: Design and Evaluation of a Novel Comparative Report Tool
Cited by: 6
Author(s): Lauren Westendorf, Orit Shaer, Christina Pollalis, Clarissa Verish, Oded Nov, Mad Price Ball
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.11553

Numb-like (NumbL) downregulation increases tumorigenicity, cancer stem cell-like properties and resistance to chemotherapy
Cited by: 37
Author(s): José Manuel García-Heredia, Eva M. Verdugo‐Sivianes, Antonio Lucena-Cacace, Sonia Molina-Pinelo, Amancio Carnero
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.12848

Co-existence of <i>BRAF</i> and <i>NRAS</i> driver mutations in the same melanoma cells results in heterogeneity of targeted therapy resistance
Cited by: 61
Author(s): Marieke I.G. Raaijmakers, Daniel Widmer, Apurva Narechania, Ossia M. Eichhoff, Sandra N. Freiberger, Judith Wenzina, Phil F. Cheng, Daniela Mihic‐Probst, Rob DeSalle, Reinhard Dummer, Mitchell P. Levesque
Software Mentions: 2
Published: about 8 years ago

10.18632/oncotarget.22111

Coordinated downregulation of Spinophilin and the catalytic subunits of PP1, PPP1CA/B/C, contributes to a worse prognosis in lung cancer
Cited by: 14
Author(s): Eva M. Verdugo‐Sivianes, Lola E. Navas, Sonia Molina-Pinelo, Irene Ferrer, Álvaro Quintanal-Villalonga, J. Peinado, José Manuel García-Heredia, Blanca Felipe‐Abrio, Sandra Muñoz-Galván, Juan Marín, Luis M. Montuenga, Luís Paz-Ares, Amancio Carnero
Software Mentions: 2
Published: about 7 years ago

10.18632/oncotarget.22769

Identify clear cell renal cell carcinoma related genes by gene network
Cited by: 2
Author(s): Fangrong Yan, Yue Wang, Chunhui Liu, Hang Zhao, Liya Zhang, Xiaofan Lu, Chen Chen, Yaoyan Wang, Tao Lü, Fei Wang
Software Mentions: 2
Published: almost 7 years ago

10.18632/oncotarget.10611

Impact of DLK1-DIO3 imprinted cluster hypomethylation in smoker patients with lung cancer
Cited by: 35
Author(s): Sonia Molina-Pinelo, Ana Salinas, Nicolás Moreno-Mata, Irene Ferrer, Rocío Suárez, Eduardo Andrés-León, Manuel Rodríguez-Paredes, Julian Gutekunst, Eloísa Jantus‐Lewintre, Carlos Camps, Amancio Carnero, Luís Paz-Ares
Software Mentions: 2
Published: over 8 years ago

10.3390/jpm11050362

The Usefulness of Cell-Based and Liquid-Based Urine Tests in Clarifying the Diagnosis and Monitoring the Course of Urothelial Carcinoma. Identification of Novel, Potentially Actionable, RB1 and ERBB2 Somatic Mutations
Cited by: 0
Author(s): Tadeusz Kałużewski, Grzegorz K. Przybylski, Michał Bednarek, Sławomir Glazar, Magdalena Grabiec, Adam Jędrzejczyk, Łukasz Kępczyński, Izabela Kubiak, Dorota Kucharska, Agnieszka Morel, Magdalena Owczarek, Marek Rożniecki, Jordan Sałamunia, Dominika Szewczyk, Jarosław Szwalski, Bogdan Kaƚużewski
Software Mentions: 2
Published: over 3 years ago

10.1155/2021/5537804

Dynamic Patterns of N6-Methyladenosine Profiles of Messenger RNA Correlated with the Cardiomyocyte Regenerability during the Early Heart Development in Mice
Cited by: 11
Author(s): Yuhui Yang, Siman Shen, Yin Cai, Ke Zeng, Keyu Liu, Simeng Li, Lanfen Zeng, Linming Chen, Jing Tang, Zhe Hu, Zhengyuan Xia, Liangqing Zhang
Software Mentions: 2
Published: over 3 years ago

10.1523/ENEURO.0101-20.2020

Resolving the Connectome, Spectrally-Specific Functional Connectivity Networks and Their Distinct Contributions to Behavior
Cited by: 7
Author(s): Robert Becker, Alexis Hervais-Adelman
Software Mentions: 2
Published: over 4 years ago

10.1534/g3.119.400957

Assessing Diversity in the<i>Camelina</i>Genus Provides Insights into the Genome Structure of<i>Camelina sativa</i>
Cited by: 26
Author(s): R. C. Chaudhary, ChuShin Koh, Sateesh Kagale, Lily Tang, Siu Wah Wu, Zhenling Lv, Annaliese S. Mason, Andrew Sharpe, Axel Diederichsen, Isobel A. P. Parkin
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21020628

Placenta-Specific Genes, Their Regulation During Villous Trophoblast Differentiation and Dysregulation in Preterm Preeclampsia
Cited by: 24
Author(s): András Szilágyi, Zsolt Gelencser, Roberto Romero, Yi Xu, Péter Király, Attila Demeter, János Pálhalmi, Balázs Győrffy, Kata Juhász, Petronella Hupuczi, Katalin A. Kékesi, Gerold Meinhardt, Zoltán Papp, Sorin Drăghici, Offer Erez, Adi L. Tarca, Martin Knöfler, Nándor Gábor Than
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21020608

Genome-Wide Investigation of Heat Shock Transcription Factor Family in Wheat (Triticum aestivum L.) and Possible Roles in Anther Development
Cited by: 23
Author(s): Jiali Ye, Xiaohong R. Yang, Hu Gan, Qi Liu, Wei Li, Lingli Zhang, Xiyue Song
Software Mentions: 1
Published: almost 5 years ago

10.1534/g3.120.401446

“Mind the Gap”: Hi-C Technology Boosts Contiguity of the Globe Artichoke Genome in Low-Recombination Regions
Cited by: 11
Author(s): Alberto Acquadro, Ezio Portis, Danila Valentino, Lorenzo Barchi, Sergio Lanteri
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2020.607432

Refinement of Draft Genome Assemblies of Pigeonpea (Cajanus cajan)
Cited by: 4
Author(s): Soma S. Marla, Pallavi Mishra, Ranjeet Maurya, Mohar Singh, Dhammaprakash Pandhari Wankhede, Anil Kumar, Mahesh C. Yadav, Naidu Subbarao, Sanjeev Kumar Singh, Rajesh Kumar
Software Mentions: 1
Published: almost 4 years ago

10.1534/g3.120.401711

Draft Genome Assembly of the Freshwater Apex Predator Wels Catfish (<i>Silurus glanis</i>) Using Linked-Read Sequencing
Cited by: 6
Author(s): Mikhail Ozerov, Martin Flajšhans, Kristina Noreikienė, Anti Vasemägi, Riho Gross
Software Mentions: 1
Published: about 4 years ago

10.1093/g3journal/jkab006

Reference genome assembly for Australian <i>Ascochyta lentis</i> isolate Al4
Cited by: 8
Author(s): Robert C. Lee, Lina M Farfan-Caceres, Johannes Wolfram Debler, Angela H. Williams, Robert A. Syme, Bernadette M. Henares
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21020634

Genome-Wide Identification and Characterization of the NAC Transcription Factor Family in Musa Acuminata and Expression Analysis during Fruit Ripening
Cited by: 32
Author(s): Bin Li, Ruiyi Fan, Qiaosong Yang, Chunhua Hu, Ou Sheng, Guiming Deng, Tingting Dong, Chunyu Li, Xinxiang Peng, Fangcheng Bi, Ganjun Yi
Software Mentions: 1
Published: almost 5 years ago

10.1093/g3journal/jkaa008

Genome sequence of the oyster mushroom <i>Pleurotus ostreatus</i> strain PC9
Cited by: 17
Author(s): Yi-Yun Lee, Guillermo Vidal-Diez de Ulzurrun, Erich M. Schwarz, Jason E. Stajich, Yu-Ting Hsueh
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2019.00812

Complete Genome Sequencing and Comparative Genome Characterization of Lactobacillus johnsonii ZLJ010, a Potential Probiotic With Health-Promoting Properties
Cited by: 32
Author(s): Wei Zhang, Jing Wang, Dongyan Zhang, Hui Liu, Sixin Wang, Yamin Wang, Hai‐Feng Ji
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0098986

Some Limitations of Public Sequence Data for Phylogenetic Inference (in Plants)
Cited by: 48
Author(s): Cody E. Hinchliff, Stephen A. Smith
Software Mentions: 1
Published: over 10 years ago

10.1093/g3journal/jkab277

High-quality genome assembly of the soybean fungal pathogen <i>Cercospora kikuchii</i>
Cited by: 4
Author(s): Takeshi Kashiwa, Tomohiro Suzuki
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00632

In Silico Genome-Wide Analysis of the Pear (Pyrus bretschneideri) KNOX Family and the Functional Characterization of PbKNOX1, an Arabidopsis BREVIPEDICELLUS Orthologue Gene, Involved in Cell Wall and Lignin Biosynthesis
Cited by: 23
Author(s): Xi Cheng, Manli Li, Muhammad Abdullah, Guohui Li, Jingyun Zhang, Muhammad Aamir Manzoor, Han Wang, Qing Jin, Tao‐Shan Jiang, Yongping Cai, Dahui Li, Yi Lin
Software Mentions: 1
Published: over 5 years ago

10.3390/genes8040111

Genome-Wide Analysis of the Sucrose Synthase Gene Family in Grape (Vitis vinifera): Structure, Evolution, and Expression Profiles
Cited by: 49
Author(s): Xudong Zhu, Mengqi Wang, Xiaopeng Li, Songtao Jiu, Chen Wang, Jinggui Fang
Software Mentions: 1
Published: over 7 years ago

10.3390/genes8100261

Expression Profiling of Mitogen-Activated Protein Kinase Genes Reveals Their Evolutionary and Functional Diversity in Different Rubber Tree (Hevea brasiliensis) Cultivars
Cited by: 15
Author(s): Xiang Jin, Liping Zhu, Yanfei Qi, Xueru Meng, Guohua Ding, Dan Wang, Quanliang Xie, Tao Zheng, Chengcheng Tao, Li Yu, Hongbin Li, Xuchu Wang
Software Mentions: 1
Published: about 7 years ago

10.3390/genes8120362

Functional Characterization of the Versatile MYB Gene Family Uncovered Their Important Roles in Plant Development and Responses to Drought and Waterlogging in Sesame
Cited by: 57
Author(s): Marie Ali Mmadi, Komivi Dossa, Linhai Wang, Rong Zhou, Yanyan Wang, Ndiaga Cissé, Mame Ourèye Sy
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms21031000

Comprehensive Profiling of Tubby-Like Protein Expression Uncovers Ripening-Related TLP Genes in Tomato (Solanum lycopersicum)
Cited by: 15
Author(s): Yaoxin Zhang, Xiaoqing He, Dan Su, Feng Yuan, Haochen Zhao, Heng Deng, Mingchun Liu
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21041293

Characterization of the OFP Gene Family and its Putative Involvement of Tuberous Root Shape in Radish
Cited by: 8
Author(s): Yanping Wang, Qingbiao Wang, Hao Wu, Honghe Sun, Li Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1008365

Convergent evolution of linked mating-type loci in basidiomycete fungi
Cited by: 28
Author(s): Sheng Sun, Marco A. Coelho, Joseph Heitman, Minou Nowrousian
Software Mentions: 1
Published: about 5 years ago

10.3390/genes9040224

Genome Wide Identification, Evolutionary, and Expression Analysis of VQ Genes from Two Pyrus Species
Cited by: 15
Author(s): Yunpeng Cao, Dong Meng, Qing Jin, Yi Lin, Yongping Cai
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9070363

Genome-Wide Comparative Analysis of Aspergillus fumigatus Strains: The Reference Genome as a Matter of Concern
Cited by: 38
Author(s): Rocio Garcia-Rubio, Sara Monzón, Laura Alcázar-Fuoli, Isabel Cuesta, Emilia Mellado
Software Mentions: 1
Published: over 6 years ago

10.3389/fgene.2019.00404

Genome-Wide Interaction and Pathway Association Studies for Body Mass Index
Cited by: 5
Author(s): Hongxiao Jiao, Yong Zang, Miaomiao Zhang, Yuan Zhang, Yaogang Wang, Kai Wang, Richard A. Price, Wei Dong Li
Software Mentions: 1
Published: over 5 years ago

10.3390/genes9080398

Genome-Wide Characterization of DNA Demethylase Genes and Their Association with Salt Response in Pyrus
Cited by: 14
Author(s): Chunxiao Liu, Hui Li, Jing Lin, Ying Wang, Xiaoyang Xu, Zong‐Ming Cheng, Yonghong Chang
Software Mentions: 1
Published: over 6 years ago

10.3390/genes9110563

Legume Cytosolic and Plastid Acetyl-Coenzyme—A Carboxylase Genes Differ by Evolutionary Patterns and Selection Pressure Schemes Acting before and after Whole-Genome Duplications
Cited by: 7
Author(s): Anna Szczepaniak, Michał Książkiewicz, Jan Podkowiński, Katarzyna B. Czyż, Marek Figlerowicz, B. Naganowska
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1005644

Absence of Maternal Methylation in Biparental Hydatidiform Moles from Women with NLRP7 Maternal-Effect Mutations Reveals Widespread Placenta-Specific Imprinting
Cited by: 78
Author(s): Marta Sánchez-Delgado, Alejandro Martin-Trujillo, Chiharu Tayama, Enrique Vidal, Manel Esteller, Isabel Iglesias-Platas, Nandita Deo, Olivia Barney, Ken Maclean, Kenichiro Hata, Kazuhiko Nakabayashi, Rosemary A. Fisher, David Gabriel Monk
Software Mentions: 1
Published: about 9 years ago

10.3390/genes9120636

Genome Based Meta-QTL Analysis of Grain Weight in Tetraploid Wheat Identifies Rare Alleles of GRF4 Associated with Larger Grains
Cited by: 34
Author(s): Raz Avni, L. Oren, Gai Shabtay, Siwar Assili, Curtis Pozniak, Iago Hale, Roi Ben‐David, Zvi Peleg, Assaf Distelfeld
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0164469

Whole-Genome Resequencing of a Cucumber Chromosome Segment Substitution Line and Its Recurrent Parent to Identify Candidate Genes Governing Powdery Mildew Resistance
Cited by: 18
Author(s): Qiang Xu, Yang Shi, Ting Yu, Xuewen Xu, Yali Yan, Xiaohua Qi, Xuehao Chen
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0080149

miRNA Signatures in Sera of Patients with Active Pulmonary Tuberculosis
Cited by: 65
Author(s): Paolo Miotto, Grace Mwangoka, Ilaria C. Valente, Luca Norbis, Giovanni Sotgiu, Roberta Bosu, Alessandro Ambrosi, Luigi Codecasa, Delia Goletti, Alberto Matteelli, Elias N. Ntinginya, Francesco Aloi, Norbert Heinrich, Klaus Reither, Daniela María Cirillo
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pgen.1005072

The Role of China in the Global Spread of the Current Cholera Pandemic
Cited by: 71
Author(s): Xavier Didelot, Bo Pang, Zhemin Zhou, A. McCann, Peixiang Ni, Dongfang Li, Mark Achtman, Biao Kan
Software Mentions: 1
Published: over 9 years ago

10.3390/genes10020156

Genome-Wide Identification and Analysis of High-Copy-Number LTR Retrotransposons in Asian Pears
Cited by: 4
Author(s): Shuang Jiang, Xiaoqing Wang, Chunhui Shi, Luo Jun
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21124436

The Genome Analysis of Methylobacterium populi YC-XJ1 with Diverse Xenobiotics Biodegrading Capacity and Degradation Characteristics of Related Hydrolase
Cited by: 8
Author(s): Xianjun Li, Junhuan Wang, Jia Yang, Aikebaier Reheman, Yanchun Yan
Software Mentions: 1
Published: over 4 years ago

10.3390/genes10030239

A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns
Cited by: 44
Author(s): Xiaolong Deng, Baoguang An, Hua Zhong, Jing Yang, Weilong Kong, Yangsheng Li
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10050400

Comprehensive Genomic Survey, Characterization and Expression Analysis of the HECT Gene Family in Brassica rapa L. and Brassica oleracea L.
Cited by: 11
Author(s): Intikhab Álam, Dongli Cui, Khadija Batool, Yanqing Yang, Yong-Zai Lu
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10070500

Genome-Wide Identification, Characterization, and Expression Analysis of the NAC Transcription Factor in Chenopodium quinoa
Cited by: 13
Author(s): Liang Feng, Xuhu Guo, Jianxia Liu, Feng Zhou, Wenying Liu, Juan Wu, Hongli Zhang, Huifen Cao, Huanzhen Su, Rong Wen
Software Mentions: 1
Published: over 5 years ago

10.3390/genes10070540

The Caribou (Rangifer tarandus) Genome
Cited by: 20
Author(s): Rebecca S. Taylor, Rebekah L. Horn, Xi Zhang, G. Brian Golding, Micheline Manseau, Paul J. Wilson
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0179073

Optimized double-digest genotyping by sequencing (ddGBS) method with high-density SNP markers and high genotyping accuracy for chickens
Cited by: 28
Author(s): Yuzhe Wang, Xianglin Cao, Yaofeng Zhao, Fei Jing, Xiaoxiang Hu, Ning Li
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2018.00494

Molecular Evolution and Stress and Phytohormone Responsiveness of SUT Genes in Gossypium hirsutum
Cited by: 13
Author(s): Wei Li, Kuan Sun, Zhongying Ren, Chengxiang Song, Xinwu Pei, Yangai Liu, Zhenyu Wang, Kunlun He, Fei Zhang, Xin Zhou, Xiongfeng Ma, Daigang Yang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1005876

Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control
Cited by: 61
Author(s): Rafael Arango, Caucasella Díaz-Trujillo, Braham Dhillon, Andrea Aerts, Jean Carlier, Charles F. Crane, Tristan de Jong, Ineke de Vries, Robert A. Dietrich, Andrew Farmer, Claudia Fortes Fereira, Suzana Garcia, M. Guzmán, Richard Hamelin, Erika Lindquist, Rahim Mehrabi, O. Quirós, Jeremy Schmutz, Harris Shapiro, Elizabeth K. Reynolds, Gabriel Scalliet, M.T. Souza, Ioannis Stergiopoulos, Theo A. J. van der Lee, P.J.G.M. de Wit, M.F. Zapater, L.H. Zwiers, Igor V. Grigoriev, Stephen B. Goodwin, G.H.J. Kema
Software Mentions: 1
Published: over 8 years ago

10.3390/genes10110849

Genomic Insights into the Carbon and Energy Metabolism of a Thermophilic Deep-Sea Bacterium Deferribacter autotrophicus Revealed New Metabolic Traits in the Phylum Deferribacteres
Cited by: 14
Author(s): A. I. Slobodkin, G. B. Slobodkina, Maxime Allioux, Karine Alain, Mohamed Jebbar, Valerian Shadrin, Ilya V. Kublanov, Stepan V. Toshchakov, E. A. Bonch-Osmolovskaya
Software Mentions: 1
Published: about 5 years ago

10.3390/genes10121000

Genome-Wide Distribution, Expression and Function Analysis of the U-Box Gene Family in Brassica oleracea L.
Cited by: 13
Author(s): Deng-Ke HU, Qinqin Xie, Qianying Liu, Tonghong Zuo, Hecui Zhang, Yizhong Zhang, Xiaoping Lian, Liquan Zhu
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes11020220

Development of Molecular Marker Linked with Bacterial Fruit Blotch Resistance in Melon (Cucumis melo L.)
Cited by: 12
Author(s): Rafiqul Islam, Mohammad Rashed Hossain, Denison Michael Immanuel Jesse, Hee-Jeong Jung, Hoy‐Taek Kim, Jong-In Park, Ill Sup Nou
Software Mentions: 1
Published: almost 5 years ago

10.3390/genes11040414

CircRNA Expression Profile during Yak Adipocyte Differentiation and Screen Potential circRNAs for Adipocyte Differentiation
Cited by: 19
Author(s): Yongfeng Zhang, Xian Guo, Jie Pei, Min Chen, Xuezhi Ding, Xiaoyun Wu, Chunnina Liang, Ping Yan
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21155344

Identification and Expression Analysis of Hormone Biosynthetic and Metabolism Genes in the 2OGD Family for Identifying Genes That May Be Involved in Tomato Fruit Ripening
Cited by: 6
Author(s): Qiangqiang Ding, Zhen Wang, Juan Xue, Xinxin Yang, Jun Fan, Hong Chen, Yang Li, Hongmiao Wu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1005391

Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates
Cited by: 42
Author(s): Jiayu Chen, Qing Sunny Shen, Wei‐Zhen Zhou, Jiguang Peng, Bin He, Yumei Li, Chu‐Jun Liu, Xuke Luan, Wanqiu Ding, Shuxian Li, Chunyan Chen, Bertrand Chin‐Ming Tan, Yong E. Zhang, Aibin He, Chuan-Yun Li
Software Mentions: 1
Published: over 9 years ago

10.3390/genes11070744

Genomic Comparison of Insect Gut Symbionts from Divergent Burkholderia Subclades
Cited by: 13
Author(s): Kazutaka Takeshita, Yoshitomo Kikuchi
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11070771

Network Analysis Identifies Gene Regulatory Network Indicating the Role of RUNX1 in Human Intervertebral Disc Degeneration
Cited by: 8
Author(s): Nazir M. Khan, Martha Elena Díaz-Hernández, Steven M. Presciutti, Hicham Drissi
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11080928

Karyotypic Evolution of Sauropsid Vertebrates Illuminated by Optical and Physical Mapping of the Painted Turtle and Slider Turtle Genomes
Cited by: 3
Author(s): Ling Sze Lee, Beatriz Navarro-Domínguez, Zhiqiang Wu, Eugenia E. Montiel, Daleen Badenhorst, Basanta Bista, Thea B. Gessler, Nicole Valenzuela
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.27085

Deep insights into the response of human cervical carcinoma cells to a new cyano enone-bearing triterpenoid soloxolone methyl: a transcriptome analysis
Cited by: 10
Author(s): Andrey Markov, Alexander Kel, Oksana V. Salomatina, N. F. Salakhutdinov, Marina A. Zenkova, Evgeniya B. Logashenko
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms21175947

Genome-Wide Systematic Characterization of the NPF Family Genes and Their Transcriptional Responses to Multiple Nutrient Stresses in Allotetraploid Rapeseed
Cited by: 22
Author(s): Hao Zhang, Shuang Li, M. Shi, Sheliang Wang, Lei Shi, Fangsen Xu, Guangda Ding
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11101135

Genome-Wide Identification and Characterization of Fusarium graminearum-Responsive lncRNAs in Triticum aestivum
Cited by: 3
Author(s): Xiao-Xin Duan, Xiu-Shi Song, Jianxin Wang, Mingguo Zhou
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11101154

F-Box Genes in the Wheat Genome and Expression Profiling in Wheat at Different Developmental Stages
Cited by: 23
Author(s): Min Jeong Hong, Jin Baek Kim, Yong Weon Seo, Dae Yeon Kim
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11111256

Involvement of Essential Signaling Cascades and Analysis of Gene Networks in Diabesity
Cited by: 27
Author(s): Udhaya Kumar S, Bithia Rajan, Thirumal Kumar D, A.R. Preethi, Taghreed Abunada, Salma Younes, Sarah Okashah, Selvarajan Ethiraj, George Priya Doss C, Hatem Zayed
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11111269

Heavy Metal Transporters-Associated Proteins in Solanum tuberosum: Genome-Wide Identification, Comprehensive Gene Feature, Evolution and Expression Analysis
Cited by: 28
Author(s): Guandi He, Lijun Qin, Weijun Tian, Lulu Meng, Tengbing He, Degang Zhao
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11121412

Evolutionary Understanding of Metacaspase Genes in Cultivated and Wild Oryza Species and Its Role in Disease Resistance Mechanism in Rice
Cited by: 4
Author(s): Ruchi Bansal, Nitika Rana, Akshay Singh, Pallavi Dhiman, Rushil Mandlik, Humira Sonah, Rupesh Deshmukh, Tilak Raj Sharma
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2016.00176

Retention and Molecular Evolution of Lipoxygenase Genes in Modern Rosid Plants
Cited by: 7
Author(s): Chen Zhu, Danmei Chen, Wenyuan Chu, Dan Zhu, Hanwei Yan, Yan Xiang
Software Mentions: 1
Published: about 8 years ago

10.3390/genes12010049

A Comprehensive Integrated Genetic Map of the Complete Karyotype of Solea senegalensis (Kaup 1858)
Cited by: 5
Author(s): Manuel Alejandro Merlo, Silvia Portela-Bens, María Esther Rodríguez, Aglaya García-Angulo, Ismael Cross, Alberto Arias‐Pérez, Emilio García García, Laureana Rebordinos
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes12020302

Comprehensive Genome-Wide Exploration of C2H2 Zinc Finger Family in Grapevine (Vitis vinifera L.): Insights into the Roles in the Pollen Development Regulation
Cited by: 13
Author(s): Oscar Arrey-Salas, José Carlos Caris-Maldonado, Bairon Hernández-Rojas, Enrique González
Software Mentions: 1
Published: almost 4 years ago

10.3390/genes12030326

Comparative Analysis, Characterization and Evolutionary Study of Dirigent Gene Family in Cucurbitaceae and Expression of Novel Dirigent Peptide against Powdery Mildew Stress
Cited by: 15
Author(s): Vivek Yadav, Zhongyuan Wang, Xiaozhen Yang, Cheng Wei, Changqing Xuan, Xian Zhang
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms21186729

Whole-Genome Sequencing Analysis of Quorum Quenching Bacterial Strain Acinetobacter lactucae QL-1 Identifies the FadY Enzyme for Degradation of the Diffusible Signal Factor
Cited by: 13
Author(s): Yao Tian, Tianxing Zhou, Xudan Xu, Wenping Zhang, Xinghui Fan, Sandhya Mishra, Lian-Hui Zhang, Xin Zhou, Shaohua Chen
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2021.584886

Genome-Wide Characterization of HSP90 Gene Family in Cucumber and Their Potential Roles in Response to Abiotic and Biotic Stresses
Cited by: 9
Author(s): Kaijing Zhang, Shuaishuai He, Sui YiHu, Qinghai Gao, Shuangshuang Jia, Xingrong Lu, Jia Li
Software Mentions: 1
Published: almost 4 years ago