pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.1117/1.JBO.25.7.071203

Fluorescence lifetime imaging microscopy: fundamentals and advances in instrumentation, analysis, and applications
Cited by: 297
Author(s): Rupsa Datta, Tiffany M. Heaster, Joe T. Sharick, Amani A. Gillette, Melissa C. Skala
Software Mentions: 1
Published: over 6 years ago

10.1117/1.JBO.26.5.056502

Extracellular pH affects the fluorescence lifetimes of metabolic co-factors
Cited by: 9
Author(s): Rebecca Schmitz, Kelsey Tweed, Christine M. Walsh, Alex J. Walsh, Melissa C. Skala
Software Mentions: 1
Published: over 5 years ago

10.1177/1087057110370895

Screening Cellular Feature Measurements for Image-Based Assay Development
Cited by: 17
Author(s): David J. Logan, Anne E. Carpenter
Software Mentions: 1
Published: about 16 years ago

10.1002/jbio.201960050

Classifying T cell activity in autofluorescence intensity images with convolutional neural networks
Cited by: 17
Author(s): Zijie Wang, Alex J. Walsh, Melissa C. Skala, Anthony Gitter
Software Mentions: 1
Published: almost 7 years ago

10.3390/jcdd8030028

PDGFRα: Expression and Function during Mitral Valve Morphogenesis
Cited by: 6
Author(s): Kelsey Moore, Diana Fulmer, Lilong Guo, Natalie Koren, Janiece Glover, Reece Moore, Cortney Gensemer, Tyler Beck, Jordan Morningstar, Rebecca Stairley, Russell A. Norris
Software Mentions: 1
Published: over 5 years ago

10.1083/jcb.202008158

High-content imaging-based pooled CRISPR screens in mammalian cells
Cited by: 47
Author(s): Xiao‐Wei Yan, Nico Stuurman, Sylvie Ribeiro, Marvin E. Tanenbaum, Max A. Horlbeck, Christina R Liem, Marco Jost, Jonathan S. Weissman, Ronald D. Vale
Software Mentions: 1
Published: over 5 years ago

10.1242/jcs.157354

N-terminal acetylation and replicative age affect proteasome localization and cell fitness during aging
Cited by: 35
Author(s): Sjoerd van Deventer, Victoria Menéndez‐Benito, Fred van Leeuwen, Jacques Neefjes
Software Mentions: 1
Published: almost 13 years ago

10.1242/jcs.140020

SMCHD1 accumulates at DNA damage sites and facilitates the repair of DNA double-strand breaks
Cited by: 17
Author(s): Heather Coker, Neil Brockdorff
Software Mentions: 1
Published: over 12 years ago

10.1242/jcs.169441

Genome-wide RNAi screen for nuclear actin reveals a network of cofilin regulators
Cited by: 31
Author(s): Joseph Dopie, Eeva Kaisa Rajakylä, Merja Joensuu, Guillaume Huet, Evelina Ferrantelli, Tiao Xie, Harri Jäälinoja, Eija Jokitalo, Maria K. Vartiainen
Software Mentions: 1
Published: over 11 years ago

10.1242/jcs.182188

DICER, DROSHA and DNA damage-response RNAs are necessary for the secondary recruitment of DNA damage response factors
Cited by: 83
Author(s): Sofia Francia, Matteo Cabrini, Valentina Matti, Amanda Oldani, Fabrizio d’Adda di Fagagna
Software Mentions: 1
Published: almost 11 years ago

10.1242/jcs.211664

Mitotic spindle assembly and γ-tubulin localisation depend on the integral nuclear membrane protein, Samp1
Cited by: 19
Author(s): Veronica Larsson, Mohammed Hakim Jafferali, Balaje Vijayaraghavan, Ricardo Figueroa, Einar Hallberg
Software Mentions: 1
Published: almost 9 years ago

10.1242/jcs.222349

Synthetic lethality of cytolytic HSV-1 in cancer cells with ATRX and PML deficiency
Cited by: 18
Author(s): Mingqi Han, Christine E. Napier, Sonja Frölich, Erdahl Teber, Ted Wong, Jane R. Noble, Eugene Ho Yan Choi, Roger D. Everett, Anthony J. Cesare, Roger R. Reddel
Software Mentions: 1
Published: almost 8 years ago

10.1242/jcs.229252

New roles for the de-ubiquitylating enzyme OTUD4 in an RNA-protein network and RNA granules
Cited by: 12
Author(s): Richa Das, Lukas Schwintzer, Stanislav Vinopal, Eva Aguado Roca, Marc Sylvester, Ana-Maria Oprişoreanu, Susanne Schoch, Frank Bradke, Meike Broemer
Software Mentions: 1
Published: almost 8 years ago

10.3390/jcm8070911

Morphological State Transition Dynamics in EGF-Induced Epithelial to Mesenchymal Transition
Cited by: 38
Author(s): Vimalathithan Devaraj, Biplab Bose
Software Mentions: 1
Published: over 7 years ago

10.1017/cts.2017.202

2098
Cited by: 0
Author(s): Hansjörg Schwertz, Jesse W. Rowley, Larry W. Kraiss, John V. Moran, Robert A. Campbell, Guy A. Zimmerman, Andrew S. Weyrich, Matthew T. Rondina, Gerald G. Schumann, Ulrike Thorack
Software Mentions: 1
Published: about 9 years ago

10.1016/j.kint.2020.05.040

The phosphoinositide 3-kinase inhibitor alpelisib restores actin organization and improves proximal tubule dysfunction in vitro and in a mouse model of Lowe syndrome and Dent disease
Cited by: 13
Author(s): Marine Berquez, Jonathan R Gadsby, Beatrice Paola Festa, Richard J. Butler, Stephen Jackson, Valeria Berno, Alessandro Luciani, Olivier Devuyst, Jennifer L. Gallop
Software Mentions: 1
Published: about 6 years ago

10.1002/osp4.396

Reduction of IL‐6 gene expression in human adipose tissue after sleeve gastrectomy surgery
Cited by: 7
Author(s): Isabel Casimiro, Erin C. Hanlon, Jeremy White, Avelino De Leon, Ruby Ross, Katiannah Moise, Matthew J. Piron, Matthew J. Brady
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1000227

Dynamic, Morphotype-Specific Candida albicans β-Glucan Exposure during Infection and Drug Treatment
Cited by: 273
Author(s): Robert T. Wheeler, Diana Kombe, Sudeep D. Agarwala, Gerald R. Fink
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.ppat.1002316

Histone Deacetylase 8 Is Required for Centrosome Cohesion and Influenza A Virus Entry
Cited by: 68
Author(s): Yohei Yamauchi, Heithem Boukari, Indranil Banerjee, Ivo F. Sbalzarini, Péter Horváth, Ari Helenius
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.ppat.1002810

Near Surface Swimming of Salmonella Typhimurium Explains Target-Site Selection and Cooperative Invasion
Cited by: 110
Author(s): Benjamin Misselwitz, Naomi Barrett, Saskia Kreibich, Pascale Vonaesch, Daniel Andritschke, Rout Samuel, Kerstin Weidner, Miloš Šormaz, Pascal Songhet, Péter Horváth, Mamta Chabria, Viola Vogel, Doris M. Spori, Patrick Jenny, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.ppat.1002976

Niclosamide Is a Proton Carrier and Targets Acidic Endosomes with Broad Antiviral Effects
Cited by: 193
Author(s): Andreas Jurgeit, Robert S. McDowell, Stefan Moese, Eric Meldrum, Reto A. Schwendener, Urs F. Greber
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.ppat.1003536

Post-Translational Control of IL-1β via the Human Papillomavirus Type 16 E6 Oncoprotein: A Novel Mechanism of Innate Immune Escape Mediated by the E3-Ubiquitin Ligase E6-AP and p53
Cited by: 103
Author(s): Martina Niebler, Xu Qian, Daniela Höfler, Vlada Kogosov, Jittranan Kaewprag, Andreas M. Kaufmann, Regina Ly, Gerd Böhmer, Rainer Zawatzky, Frank Rösl, Bladimiro Rincón-Orozco
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1003737

The Inflammatory Kinase MAP4K4 Promotes Reactivation of Kaposi's Sarcoma Herpesvirus and Enhances the Invasiveness of Infected Endothelial Cells
Cited by: 31
Author(s): Darya A. Haas, Kiran Bala, Guntram Büsche, Magdalena Weidner-Glunde, Susann Santag, Semra Kati, Silvia Gramolelli, Modester Damas, Oliver Dittrich‐Breiholz, Michael Kracht, Jessica Rückert, Zoltán Varga, Gÿorgý Kéri, Thomas F. Schulz
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.ppat.1003771

Antibodies Trap Tissue Migrating Helminth Larvae and Prevent Tissue Damage by Driving IL-4Rα-Independent Alternative Differentiation of Macrophages
Cited by: 96
Author(s): Julia Esser‐von Bieren, Ilaria Mosconi, Romain Guiet, Alessandra Piersgilli, Beatrice Volpe, Feifei Chen, William C. Gause, Arne Seitz, J. Sjef Verbeek, Nicola L. Harris
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.ppat.1003946

Identification of Host-Targeted Small Molecules That Restrict Intracellular Mycobacterium tuberculosis Growth
Cited by: 212
Author(s): Sarah A. Stanley, Amy K. Barczak, Melanie R. Silvis, Samantha S. Luo, Kimberly M. Sogi, Martha S. Vokes, Mark-Anthony Bray, Anne E. Carpenter, Christopher Moore, Noman Siddiqi, Eric J. Rubín, Deborah T. Hung
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004013

Identification of OmpA, a Coxiella burnetii Protein Involved in Host Cell Invasion, by Multi-Phenotypic High-Content Screening
Cited by: 111
Author(s): Eric Martínez, Franck Cantet, L. Fava, Isobel H. Norville, Matteo Bonazzi
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004162

Large Scale RNAi Reveals the Requirement of Nuclear Envelope Breakdown for Nuclear Import of Human Papillomaviruses
Cited by: 123
Author(s): Inci Aydin, Susanne N. Weber, Berend Snijder, Pilar Samperio Ventayol, Andreas Kühbacher, Miriam Becker, Patricia M. Day, John T. Schiller, Michael Kann, Lucas Pelkmans, Ari Helenius, Mario Schelhaas
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1004390

Crimean-Congo Hemorrhagic Fever Virus Entry into Host Cells Occurs through the Multivesicular Body and Requires ESCRT Regulators
Cited by: 45
Author(s): Olena Shtanko, Raisa A. Nikitina, Cengiz Z. Altuntas, А. А. Чепурнов, Robert A. Davey
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.ppat.1004530

Rubella Virus: First Calcium-Requiring Viral Fusion Protein
Cited by: 52
Author(s): Mathieu Dubé, F.A. Rey, Margaret Kielian
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.ppat.1004778

Immune Antibodies and Helminth Products Drive CXCR2-Dependent Macrophage-Myofibroblast Crosstalk to Promote Intestinal Repair
Cited by: 27
Author(s): Julia Esser‐von Bieren, Bruce T. Volpe, Duncan B. Sutherland, Jérôme Bürgi, J. Sjef Verbeek, Benjamin J. Marsland, Joseph F. Urban, Nicola L. Harris
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1005058

Utilizing Chemical Genomics to Identify Cytochrome b as a Novel Drug Target for Chagas Disease
Cited by: 47
Author(s): Shilpi Khare, Steven L. Roach, S. Whitney Barnes, Dominic Hoepfner, John R. Walker, Arnab K. Chatterjee, R. Jeffrey Neitz, Michelle R. Arkin, Case W. McNamara, Jaime Ballard, Yin Hwa Lai, Yue Fu, Valentina Molteni, Vince S. C. Yeh, James H. McKerrow, Richard Glynne, Frantisek Supek
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1005403

Gliding Associated Proteins Play Essential Roles during the Formation of the Inner Membrane Complex of Toxoplasma gondii
Cited by: 57
Author(s): Clare R. Harding, Saskia Egarter, Matthew Gow, Elena Jiménez-Ruiz, David Ferguson, Markus Meissner
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005568

ABHD5/CGI-58, the Chanarin-Dorfman Syndrome Protein, Mobilises Lipid Stores for Hepatitis C Virus Production
Cited by: 25
Author(s): Gabrielle Vièyres, Kathrin Welsch, Gisa Gerold, Juliane Gentzsch, Sina Kahl, Florian W. R. Vondran, Lars Kaderali, Thomas Pietschmann
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005602

Macropinosomes are Key Players in Early Shigella Invasion and Vacuolar Escape in Epithelial Cells
Cited by: 83
Author(s): Allon Weiner, Nora Mellouk, Noelia López-Montero, Yuen-Yan Chang, Célia Souque, Christine Schmitt, Jost Enninga
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1005669

Leishmania amazonensis Engages CD36 to Drive Parasitophorous Vacuole Maturation
Cited by: 39
Author(s): Kendi Okuda, Mei Song Tong, Dempsey Brian, Kathryn J. Moore, Ricardo T. Gazzinelli, Neal S. Silverman
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1006224

ALPK1 controls TIFA/TRAF6-dependent innate immunity against heptose-1,7-bisphosphate of gram-negative bacteria
Cited by: 84
Author(s): Milica Milivojevic, Anne‐Sophie Dangeard, Christoph Kasper, Therese Tschon, Mario Emmenlauer, Claudine Pique, Pamela Schnupf, Julie Guignot, Cécile Arrieumerlou
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1006308

A central region in the minor capsid protein of papillomaviruses facilitates viral genome tethering and membrane penetration for mitotic nuclear entry
Cited by: 51
Author(s): Inci Aydin, Ruth Villalonga-Planells, Lilo Greune, Matthew P. Bronnimann, Christine M. Calton, Miriam Becker, Kun Lai, Samuel K. Campos, M. Alexander Schmidt, Mario Schelhaas
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1006363

Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence
Cited by: 86
Author(s): Amy K. Barczak, Roi Avraham, Shantanu Singh, Samantha S. Luo, Wei Ran Zhang, Mark-Anthony Bray, Amelia E Hinman, Matthew P. Thompson, Raymond M. Nietupski, Aaron Golas, P.C. Montgomery, Michael G. FitzGerald, Roger S. Smith, Dylan W. White, Anna D. Tischler, Anne E. Carpenter, Deborah T. Hung
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1006823

Importin α1 is required for nuclear import of herpes simplex virus proteins and capsid assembly in fibroblasts and neurons
Cited by: 30
Author(s): Katinka Döhner, Ana Ramos-Nascimento, Dagmara Bialy, Fenja Anderson, Ana Hickford-Martinez, Franziska Rother, Thalea Koithan, Kathrin Rudolph, Anna Buch, Ute Prank, Anne Binz, Stefanie Hügel, Robert Jan Lebbink, Rob C. Hoeben, Enno Hartmann, Michael Bäder, Rudolf Bauerfeind, Beate Sodeik
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006874

Lipid droplet formation in Mycobacterium tuberculosis infected macrophages requires IFN-γ/HIF-1α signaling and supports host defense
Cited by: 142
Author(s): Matthew Knight, Jonathan Braverman, Kaleb Asfaha, Karsten Gronert, Sarah A. Stanley
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006914

Lung macrophage scavenger receptor SR-A6 (MARCO) is an adenovirus type-specific virus entry receptor
Cited by: 56
Author(s): Nicole Stichling, Maarit Suomalainen, Justin W. Flatt, Markus Schmid, Martin Pačesa, Silvio Hemmi, Wolfgang Jungraithmayr, Mareike D. Maler, Marina A. Freudenberg, Andreas Plückthun, Tobias May, Mario Köster, György Fejér, Urs F. Greber
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1007842

Separate domains of G3BP promote efficient clustering of alphavirus replication complexes and recruitment of the translation initiation machinery
Cited by: 44
Author(s): Benjamin Götte, Marc D. Panas, Kirsi Hellström, Lifeng Liu, Baila Samreen, Ola Larsson, Tero Ahola, Gerald M. McInerney
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1009018

Defensin-driven viral evolution
Cited by: 8
Author(s): Karina Diaz, Ciara T Hu, Youngmee Sul, Beth A. Bromme, Nicolle D. Myers, Ksenia V. Skorohodova, Anshu P. Gounder, Jason G. Smith
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.ppat.1008548

Bartonella effector protein C mediates actin stress fiber formation via recruitment of GEF-H1 to the plasma membrane
Cited by: 9
Author(s): Simon Marlaire, Christoph Dehio
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009310

Uropathogenic E. coli induces DNA damage in the bladder
Cited by: 18
Author(s): Camille V. Chagneau, Clémence Massip, Nadège Bossuet-Greif, Christophe Fremez, Jean-Paul Motta, Ayaka Shima, Céline Besson, Pauline Le Faouder, Nicolas Cénac, Marie‐Paule Roth, Hélène Coppin, Maxime Fontanié, Patricia Martín, Jean-Philippe Nougayrède, Éric Oswald
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009771

CD97 stabilises the immunological synapse between dendritic cells and T cells and is targeted for degradation by the Salmonella effector SteD
Cited by: 13
Author(s): Ondřej Černý, Camilla Godlee, Romina Tocci, Nancy E. Cross, Haoran Shi, James C Williamson, Eric Alix, Paul J. Lehner, David W. Holden
Software Mentions: 1
Published: about 5 years ago

10.1155/2017/7097450

2,4-Thiazolidinedione Treatment Improves the Innate Immune Response in Dairy Goats with Induced Subclinical Mastitis
Cited by: 15
Author(s): Fernanda Rosa, J. S. Osorio, Erminio Trevisi, Francisco Yanqui-Rivera, Charles T. Estill, Massimo Bionaz
Software Mentions: 1
Published: almost 10 years ago

10.3390/polym12091992

Enhanced Antibiofilm Effects of N2 Plasma-Treated Buffer Combined with Antimicrobial Hexapeptides Against Plant Pathogens
Cited by: 3
Author(s): Bohyun Kim, Hyemi Seo, Jin Hyung Lee, Sung-Hyun Kim, Won Il Choi, Daekyung Sung, Eunpyo Moon
Software Mentions: 1
Published: about 6 years ago

10.1073/pnas.1905787116

The microbiota regulates murine inflammatory responses to toxin-induced CNS demyelination but has minimal impact on remyelination
Cited by: 24
Author(s): Christopher E McMurran, Alerie Guzman de la Fuente, Rosana Peñalva, Ofra Ben Menachem-Zidon, Yvonne Dombrowski, John Falconer, Ginez A. González, Chao Zhao, Fynn N. Krause, Adam M. H. Young, Julian L. Griffin, Clare A. Jones, Claire Hollins, Markus M. Heimesaat, Denise Fitzgerald, R. J. M. Franklin
Software Mentions: 1
Published: almost 7 years ago

10.1073/pnas.1912307117

Robust hepatitis E virus infection and transcriptional response in human hepatocytes
Cited by: 57
Author(s): Daniel Todt, Martina Friesland, Nora Moeller, Dimas Praditya, Volker Kinast, Yannick Brüggemann, Leonard Knegendorf, Thomas Burkard, Joerg Steinmann, Rani Burm, Lieven Verhoye, Avista Wahid, Toni Luise Meister, Michael Engelmann, Vanessa Maria Pfankuche, Christina Puff, Florian W. R. Vondran, Wolfgang Baumgärtner, Philip Meuleman, Patrick Behrendt, Eike Steinmann
Software Mentions: 1
Published: almost 7 years ago

10.1073/pnas.2012854118

GRK5 is a regulator of fibroblast activation and cardiac fibrosis
Cited by: 27
Author(s): Akito Eguchi, Ryan C. Coleman, Kenneth S. Gresham, Erhe Gao, Jessica Ibetti, J. Kurt Chuprun, Walter J. Koch
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2019622118

Drosophila Sex Peptide controls the assembly of lipid microcarriers in seminal fluid
Cited by: 12
Author(s): S. Mark Wainwright, Ben R. Hopkins, Cláudia C. Mendes, Aashika Sekar, Benjamin Kroeger, Hellberg Jeeu., Fan S-J., Abigail Pavey, Pauline Marie, Aaron Leiblich, Irem Sepil, P. David Charles, Marie‐Laëtitia Thézénas, Román Fischer, Benedikt M. Kessler, Carina Gandy, Laura Corrigan, Raf Patel, Stuart Wigby, John F. Morris, Goberdhan Dci., Clive Wilson
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2021342118

CD20 as a gatekeeper of the resting state of human B cells
Cited by: 44
Author(s): Kathrin Kläsener, Julia Jellusova, Geoffroy Andrieux, Ulrich Salzer, Chiara Böhler, Sebastian N. Steiner, Jonas B. Albinus, Marco Cavallari, Beatrix Süß, Reinhard Voll, Melanie Boerries, Bernd Wollscheid, Michael Reth
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2021586118

Visualizing active viral infection reveals diverse cell fates in synchronized algal bloom demise
Cited by: 46
Author(s): Flora Vincent, Uri Sheyn, Ziv Porat, Daniella Schatz, Assaf Vardi
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2023157118

ORF10–Cullin-2–ZYG11B complex is not required for SARS-CoV-2 infection
Cited by: 24
Author(s): Elijah L. Mena, Callie J. Donahue, Laura Pontano Vaites, Jie Li, Gergely Róna, Colin O’Leary, Luca Lignitto, Bearach Miwatani-Minter, João A. Paulo, Avantika Dhabaria, Beatrix Ueberheide, Steven P. Gygi, Michele Pagano, J. Wade Harper, Robert A. Davey, Stephen J. Elledge
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2025053118

ALS- and FTD-associated missense mutations in TBK1 differentially disrupt mitophagy
Cited by: 45
Author(s): Olivia Harding, Chantell S. Evans, Junqiang Ye, Jonah Cheung, Tom Maniatis, Erika L.F. Holzbaur
Software Mentions: 1
Published: over 5 years ago

10.1073/pnas.2023051118

Restriction of SARS-CoV-2 replication by targeting programmed −1 ribosomal frameshifting
Cited by: 67
Author(s): Yu Sun, Laura Abriola, Rachel O. Niederer, Savannah F. Pedersen, Mia Madel Alfajaro, Valter Silva Monteiro, Craig B. Wilen, Ya Chi Ho, Wendy V. Gilbert, Yulia V. Surovtseva, Brett D. Lindenbach, Junjie U. Guo
Software Mentions: 1
Published: over 5 years ago

10.1098/rsos.170463

Role of growth rate on the orientational alignment of Escherichia coli in a slit
Cited by: 16
Author(s): Julian Sheats, Bianca Sclavi, Marco Cosentino Lagomarsino, Pietro Cicuta, Kevin D. Dorfman
Software Mentions: 1
Published: over 9 years ago

10.1186/s40340-015-0010-9

Mesenchymal stromal cells support endothelial cell interactions in an intramuscular islet transplantation model
Cited by: 17
Author(s): Moa Fransson, Johan Brännström, Ida Rasmusson Duprez, Magnus Essand, Katarina Le Blanc, Olle Korsgren, Peetra U. Magnusson
Software Mentions: 1
Published: about 11 years ago

10.1186/s12977-016-0292-7

HIV-1 capsid uncoating initiates after the first strand transfer of reverse transcription
Cited by: 67
Author(s): Ophélie Cosnefroy, Philip J. Murray, Kate N. Bishop
Software Mentions: 1
Published: about 10 years ago

10.1177/2472555219879053

High-Content Imaging for Large-Scale Detection of Low-Affinity Extracellular Protein Interactions
Cited by: 10
Author(s): Laura D. Wood, Gavin J. Wright
Software Mentions: 1
Published: almost 7 years ago

10.1177/2472555220917115

High-Content Phenotypic Profiling in Esophageal Adenocarcinoma Identifies Selectively Active Pharmacological Classes of Drugs for Repurposing and Chemical Starting Points for Novel Drug Discovery
Cited by: 15
Author(s): Rebecca E. Hughes, Richard Elliott, Alison F. Munro, Ashraff Makda, J. Robert O’Neill, Ted R. Hupp, Neil O. Carragher
Software Mentions: 1
Published: about 6 years ago

10.1016/j.xpro.2021.100463

High-throughput generation of midbrain dopaminergic neuron organoids from reporter human pluripotent stem cells
Cited by: 10
Author(s): Lily Sarrafha, Gustavo M. Parfitt, Ricardo Reyes, Camille Goldman, Elena Coccia, Tatyana Kareva, Tim Ahfeldt
Software Mentions: 1
Published: over 5 years ago

10.1016/j.xpro.2021.100502

Protocol for automated production of human stem cell derived liver spheres
Cited by: 6
Author(s): Jose Meseguer-Ripolles, Alvile Kasarinaite, Baltasar Lucendo‐Villarin, David C. Hay
Software Mentions: 1
Published: over 5 years ago

10.1126/sciadv.aat3775

Plasmodium gametocytes display homing and vascular transmigration in the host bone marrow
Cited by: 68
Author(s): Mariana De Niz, Elamaran Meibalan, Pedro Mejia, Siyuan Ma, Nicolas M. B. Brancucci, Carolina Agop‐Nersesian, Rebecca Mandt, Priscilla Ngotho, Katie R. Hughes, Andrew P. Waters, Curtis Huttenhower, James R. Mitchell, Roberta Martinelli, Friedrich Frischknecht, Karl B. Seydel, Terrie E. Taylor, Danny A. Milner, Volker Heussler, Matthias Marti
Software Mentions: 1
Published: over 8 years ago

10.1038/sdata.2017.170

Protocols and characterization data for 2D, 3D, and slice-based tumor models from the PREDECT project
Cited by: 26
Author(s): Ronald de Hoogt, Marta Estrada, Suzana Vidic, Emma Davies, Annika Oßwald, Michaël Barbier, Vítor E. Santo, Kjersti Gjerde, Hanneke J. A. A. van Zoggel, Sami Blom, Di Meng, Katja Närhi, Erwin R. Boghaert, Catarina Brito, Yolanda T. Chong, Wolfgang Sommergruber, Heiko van der Kuip, Wytske M. van Weerden, Emmy W. Verschuren, John A. Hickman, Ralph Graeser
Software Mentions: 1
Published: almost 9 years ago

10.1038/sdata.2018.116

High content screen for identifying small-molecule LC3B-localization modulators in a renal cancer cell line
Cited by: 6
Author(s): Likhitha Kolla, David Heo, Daniel P. Rosenberg, Sara A. Barlow, Anna A. Maximova, Emily E. Cassio, William J. Buchser
Software Mentions: 1
Published: over 8 years ago

10.1038/srep09038

Protein Traffic Disorders: an Effective High-Throughput Fluorescence Microscopy Pipeline for Drug Discovery
Cited by: 51
Author(s): Hugo M. Botelho, Inna Uliyakina, Nikhil T Awatade, Maria da Conceição Proença, Christian Tischer, Lalida Sirianant, Karl Kunzelmann, Rainer Pepperkok, Margarida D. Amaral
Software Mentions: 1
Published: over 11 years ago

10.1038/srep12317

Compaction of rolling circle amplification products increases signal integrity and signal-to-noise ratio
Cited by: 26
Author(s): Carl-Magnus Clausson, Linda Arngården, Omer Ishaq, Axel Klaesson, Malte Kühnemund, Karin Grannas, Björn Koos, Xiaoyan Qian, Petter Ranefall, Tomasz Krzywkowski, Hjalmar Brismar, Mats Nilsson, Carolina Wählby, Ola Söderberg
Software Mentions: 1
Published: about 11 years ago

10.1038/srep12540

Laser-scanning cytometry can quantify human adipocyte browning and proves effectiveness of irisin
Cited by: 33
Author(s): Endre Kristóf, Quang Minh Doan‐Xuan, Péter Bai, Zsolt Bacsó, László Fésüs
Software Mentions: 1
Published: about 11 years ago

10.1038/srep13576

Evaluation of drug-targetable genes by defining modes of abnormality in gene expression
Cited by: 12
Author(s): Junseong Park, Jungsul Lee, Chulhee Choi
Software Mentions: 1
Published: about 11 years ago

10.1038/srep15029

The folate-coupled enzyme MTHFD2 is a nuclear protein and promotes cell proliferation
Cited by: 81
Author(s): Nina Gustafsson, Lisa Jarl, Diana Mahadessian, Laura Strittmatter, Angelika Schmidt, Nikhil Madhusudan, Jesper Tegnér, Emma Lundberg, Anna Asplund, Mohit Jain, Roland Nilsson
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep15222

Three-Dimensional Blood-Brain Barrier Model for in vitro Studies of Neurovascular Pathology
Cited by: 152
Author(s): Hansang Cho, Ji Hae Seo, Keith H.K. Wong, Yasukazu Terasaki, Joseph Park, Kiwan Bong, Ken Arai, Eng H. Lo, Daniel Irimia
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep09850

Spatial mapping of the biologic effectiveness of scanned particle beams: towards biologically optimized particle therapy
Cited by: 115
Author(s): Fada Guan, Lawrence F. Bronk, Uwe Titt, Steven H. Lin, Dragan Mirković, M. Kerr, Xiaorong Ronald Zhu, Jeffrey Dinh, Mary Sobieski, Clifford Stephan, C Peeler, Reza Taleei, Radhe Mohan, David R. Grosshans
Software Mentions: 1
Published: over 11 years ago

10.1038/srep18889

Drug response in organoids generated from frozen primary tumor tissues
Cited by: 74
Author(s): Alex J. Walsh, Rebecca S. Cook, Melinda E. Sanders, Carlos L. Arteaga, Melissa C. Skala
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep21991

High-resolution Identification and Separation of Living Cell Types by Multiple microRNA-responsive Synthetic mRNAs
Cited by: 24
Author(s): Kiyoshi Endo, Karin Hayashi, Hirohide Saito
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21471

Deep Learning in Label-free Cell Classification
Cited by: 349
Author(s): Claire Lifan Chen, Ata Mahjoubfar, Li Chia Tai, Ian K. Blaby, Allen Huang, Kayvan Niazi, Bahram Jalali
Software Mentions: 1
Published: over 10 years ago

10.1038/srep24055

Growth resumption from stationary phase reveals memory in Escherichia coli cultures
Cited by: 60
Author(s): Arvi Jõers, Tanel Tenson
Software Mentions: 1
Published: over 10 years ago

10.1038/srep24356

CRISPR-Cas9D10A nickase-based genotypic and phenotypic screening to enhance genome editing
Cited by: 104
Author(s): Ting-Wei Chiang, Carlos le Sage, Delphine Larrieu, Mukerrem Demir, Stephen Jackson
Software Mentions: 1
Published: over 10 years ago

10.1038/srep24637

Induction of Human iPSC-Derived Cardiomyocyte Proliferation Revealed by Combinatorial Screening in High Density Microbioreactor Arrays
Cited by: 52
Author(s): Drew M. Titmarsh, Nick Glass, Richard J. Mills, Alejandro Hidalgo, Ernst J. Wolvetang, Enzo R. Porrello, James E. Hudson, Justin J. Cooper-White
Software Mentions: 1
Published: over 10 years ago

10.1038/srep25095

Image-based compound profiling reveals a dual inhibitor of tyrosine kinase and microtubule polymerization
Cited by: 7
Author(s): Kenji Tanabe
Software Mentions: 1
Published: over 10 years ago

10.1038/srep24925

LIMK Regulates Tumor-Cell Invasion and Matrix Degradation Through Tyrosine Phosphorylation of MT1-MMP
Cited by: 54
Author(s): Emilie Lagoutte, Clémentine Villeneuve, Laurence Lafanechère, Claire M. Wells, Gareth E. Jones, Philippe Chavrier, Carine Rossé
Software Mentions: 1
Published: over 10 years ago

10.1038/srep25187

Characterization of primary human hepatocyte spheroids as a model system for drug-induced liver injury, liver function and disease
Cited by: 471
Author(s): Catherine Bell, Delilah Hendriks, Sabrina Moro, Ewa Ellis, James Walsh, Anna Renblom, Lisa Fredriksson Puigvert, Anita C. A. Dankers, Frank Jacobs, Jan Snoeys, Rowena Sison-Young, Rosalind E. Jenkins, Åsa Nordling, Souren Mkrtchian, B. Kevin Park, Neil R. Kitteringham, Christopher E. Goldring, Volker M. Lauschke, Magnus Ingelman‐Sundberg
Software Mentions: 1
Published: over 10 years ago

10.1038/srep28951

Capturing tumor complexity in vitro: Comparative analysis of 2D and 3D tumor models for drug discovery
Cited by: 178
Author(s): Kristin Stock, Marta Estrada, Suzana Vidic, Kjersti Gjerde, Albin Rudisch, Vítor E. Santo, Michaël Barbier, Sami Blom, Sharath C. Arundkar, Irwin Selvam, Annika Oßwald, Yan Stein, Sylvia Gruenewald, Catarina Brito, Wytske van Weerden, Varda Rotter, Erwin R. Boghaert, Moshe Oren, Wolfgang Sommergruber, Yolanda T. Chong, Ronald de Hoogt, Ralph Graeser
Software Mentions: 1
Published: over 10 years ago

10.1038/srep28865

A systematic High-Content Screening microscopy approach reveals key roles for Rab33b, OATL1 and Myo6 in nanoparticle trafficking in HeLa cells
Cited by: 19
Author(s): Angela Panarella, Mariana G. Bexiga, George Galea, Elaine D O' Neill, Anna Salvati, Kenneth A. Dawson, Jeremy C. Simpson
Software Mentions: 1
Published: over 10 years ago

10.1038/srep29510

Endothelial cell alignment as a result of anisotropic strain and flow induced shear stress combinations
Cited by: 73
Author(s): Ravi Sinha, Séverine Le Gac, Nico Verdonschot, Albert van den Berg, Bart Koopman, Jeroen Rouwkema
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31566

Transgenic overexpression of VEGF-C induces weight gain and insulin resistance in mice
Cited by: 37
Author(s): Sinem Karaman, Maija Hollmén, Sun‐Young Yoon, H. Furkan Alkan, Kari Alitalo, Christian Wolfrum, Michael Detmar
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31360

A point mutation in AgrC determines cytotoxic or colonizing properties associated with phenotypic variants of ST22 MRSA strains
Cited by: 25
Author(s): Srikanth Mairpady Shambat, Nikolai Siemens, Ian R. Monk, Disha B. Mohan, Santhosh Mukundan, Karthickeyan Chella Krishnan, Sushma Prabhakara, Johanna Snäll, Angela Kearns, François Vandenesch, Mattias Svensson, Malak Kotb, B. Gopal, Gayathri Arakere, Anna Norrby‐Teglund
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31516

Systematic evaluation of sericin protein as a substitute for fetal bovine serum in cell culture
Cited by: 18
Author(s): Liyuan Liu, Jinhuan Wang, Shengchang Duan, Lei Chen, Hui Xiang, Yang Dong, Wang Wen
Software Mentions: 1
Published: about 10 years ago

10.1038/srep31694

A simple non-perturbing cell migration assay insensitive to proliferation effects
Cited by: 35
Author(s): Honor L. Glenn, Jacob Messner, Deirdre R. Meldrum
Software Mentions: 1
Published: about 10 years ago

10.1038/srep32412

Accurate Morphology Preserving Segmentation of Overlapping Cells based on Active Contours
Cited by: 58
Author(s): Csaba Molnár, Ian H. Jermyn, Zoltán Kató, Vesa Rahkama, Päivi Östling, Piia Mikkonen, Vilja Pietiäinen, Péter Horváth
Software Mentions: 1
Published: about 10 years ago

10.1038/srep34097

Stretch Injury of Human Induced Pluripotent Stem Cell Derived Neurons in a 96 Well Format
Cited by: 34
Author(s): Sydney A. Sherman, Jack Phillips, Joseph Costa, Frances S. Cho, Sevan R. Oungoulian, John D. Finan
Software Mentions: 1
Published: about 10 years ago

10.1038/srep35434

Hepatic 3D spheroid models for the detection and study of compounds with cholestatic liability
Cited by: 111
Author(s): Delilah Hendriks, Lisa Fredriksson Puigvert, Simon Messner, Wolfgang Mortiz, Magnus Ingelman‐Sundberg
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep37201

Intronless WNT10B-short variant underlies new recurrent allele-specific rearrangement in acute myeloid leukaemia
Cited by: 13
Author(s): Francesca Lazzaroni, Luca Del Giacco, Daniele Biasci, Mauro Turrini, Laura Prosperi, R Brusamolino, Roberto Cairoli, Alessandro Beghini
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep37909

Relationship between nanotopographical alignment and stem cell fate with live imaging and shape analysis
Cited by: 49
Author(s): Peter Newman, Jorge Luis Galenano-Niño, Pamela L. Graney, Joselito M. Razal, Andrew I. Minett, João Francisco Magno Ribas, Raquel Ovalle‐Robles, Maté Biro, Hala Zreiqat
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep39457

Efficient derivation of extraembryonic endoderm stem cell lines from mouse postimplantation embryos
Cited by: 18
Author(s): Jiangwei Lin, Mona Khan, Bolek Zapiec, Peter Mombaerts
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep39693

Functional insights into the late embryogenesis abundant (LEA) protein family from Dendrobium officinale (Orchidaceae) using an Escherichia coli system
Cited by: 56
Author(s): Hong Ling, Zhiai Xu, Shun‐Xing Guo
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep39501

Premature senescence of endothelial cells upon chronic exposure to TNFα can be prevented by N-acetyl cysteine and plumericin
Cited by: 95
Author(s): Shafaat Yar Khan, Ezzat M. Awad, André Oszwald, Manuel Mayr, Xiaoke Yin, Birgit Waltenberger, Hermann Stuppner, Markus Lipovac, Pavel Uhrín, Johannes M. Breuss
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep40953

Cofilin Regulates Nuclear Architecture through a Myosin-II Dependent Mechanotransduction Module
Cited by: 40
Author(s): O’Neil Wiggan, Bryce Schroder, Diego Krapf, James R. Bamburg, Jennifer G. DeLuca
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43039

Group A Streptococcal M1 Protein Provides Resistance against the Antimicrobial Activity of Histones
Cited by: 23
Author(s): Simon Döhrmann, Christopher N. LaRock, Ericka L. Anderson, Jason N. Cole, Brinda Ryali, Chelsea Stewart, Poochit Nonejuie, Joe Pogliano, Ross Corriden, Partho Ghosh, Victor Nizet
Software Mentions: 1
Published: over 9 years ago

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