pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.1002/osp4.396

Reduction of IL‐6 gene expression in human adipose tissue after sleeve gastrectomy surgery
Cited by: 7
Author(s): Isabel Casimiro, Erin C. Hanlon, Jeremy White, Avelino De Leon, Ruby Ross, Katiannah Moise, Matthew J. Piron, Matthew J. Brady
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1000227

Dynamic, Morphotype-Specific Candida albicans β-Glucan Exposure during Infection and Drug Treatment
Cited by: 273
Author(s): Robert T. Wheeler, Diana Kombe, Sudeep D. Agarwala, Gerald R. Fink
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.ppat.1002316

Histone Deacetylase 8 Is Required for Centrosome Cohesion and Influenza A Virus Entry
Cited by: 68
Author(s): Yohei Yamauchi, Heithem Boukari, Indranil Banerjee, Ivo F. Sbalzarini, Péter Horváth, Ari Helenius
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1002810

Near Surface Swimming of Salmonella Typhimurium Explains Target-Site Selection and Cooperative Invasion
Cited by: 110
Author(s): Benjamin Misselwitz, Naomi Barrett, Saskia Kreibich, Pascale Vonaesch, Daniel Andritschke, Rout Samuel, Kerstin Weidner, Miloš Šormaz, Pascal Songhet, Péter Horváth, Mamta Chabria, Viola Vogel, Doris M. Spori, Patrick Jenny, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1002976

Niclosamide Is a Proton Carrier and Targets Acidic Endosomes with Broad Antiviral Effects
Cited by: 193
Author(s): Andreas Jurgeit, Robert S. McDowell, Stefan Moese, Eric Meldrum, Reto A. Schwendener, Urs F. Greber
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.ppat.1003536

Post-Translational Control of IL-1β via the Human Papillomavirus Type 16 E6 Oncoprotein: A Novel Mechanism of Innate Immune Escape Mediated by the E3-Ubiquitin Ligase E6-AP and p53
Cited by: 103
Author(s): Martina Niebler, Xu Qian, Daniela Höfler, Vlada Kogosov, Jittranan Kaewprag, Andreas M. Kaufmann, Regina Ly, Gerd Böhmer, Rainer Zawatzky, Frank Rösl, Bladimiro Rincón-Orozco
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1003737

The Inflammatory Kinase MAP4K4 Promotes Reactivation of Kaposi's Sarcoma Herpesvirus and Enhances the Invasiveness of Infected Endothelial Cells
Cited by: 31
Author(s): Darya A. Haas, Kiran Bala, Guntram Büsche, Magdalena Weidner-Glunde, Susann Santag, Semra Kati, Silvia Gramolelli, Modester Damas, Oliver Dittrich‐Breiholz, Michael Kracht, Jessica Rückert, Zoltán Varga, Gÿorgý Kéri, Thomas F. Schulz
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1003771

Antibodies Trap Tissue Migrating Helminth Larvae and Prevent Tissue Damage by Driving IL-4Rα-Independent Alternative Differentiation of Macrophages
Cited by: 96
Author(s): Julia Esser‐von Bieren, Ilaria Mosconi, Romain Guiet, Alessandra Piersgilli, Beatrice Volpe, Feifei Chen, William C. Gause, Arne Seitz, J. Sjef Verbeek, Nicola L. Harris
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1003946

Identification of Host-Targeted Small Molecules That Restrict Intracellular Mycobacterium tuberculosis Growth
Cited by: 212
Author(s): Sarah A. Stanley, Amy K. Barczak, Melanie R. Silvis, Samantha S. Luo, Kimberly M. Sogi, Martha S. Vokes, Mark-Anthony Bray, Anne E. Carpenter, Christopher Moore, Noman Siddiqi, Eric J. Rubín, Deborah T. Hung
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1004013

Identification of OmpA, a Coxiella burnetii Protein Involved in Host Cell Invasion, by Multi-Phenotypic High-Content Screening
Cited by: 111
Author(s): Eric Martínez, Franck Cantet, L. Fava, Isobel H. Norville, Matteo Bonazzi
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1004162

Large Scale RNAi Reveals the Requirement of Nuclear Envelope Breakdown for Nuclear Import of Human Papillomaviruses
Cited by: 123
Author(s): Inci Aydin, Susanne N. Weber, Berend Snijder, Pilar Samperio Ventayol, Andreas Kühbacher, Miriam Becker, Patricia M. Day, John T. Schiller, Michael Kann, Lucas Pelkmans, Ari Helenius, Mario Schelhaas
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1004390

Crimean-Congo Hemorrhagic Fever Virus Entry into Host Cells Occurs through the Multivesicular Body and Requires ESCRT Regulators
Cited by: 45
Author(s): Olena Shtanko, Raisa A. Nikitina, Cengiz Z. Altuntas, А. А. Чепурнов, Robert A. Davey
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.ppat.1004530

Rubella Virus: First Calcium-Requiring Viral Fusion Protein
Cited by: 52
Author(s): Mathieu Dubé, F.A. Rey, Margaret Kielian
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.ppat.1004778

Immune Antibodies and Helminth Products Drive CXCR2-Dependent Macrophage-Myofibroblast Crosstalk to Promote Intestinal Repair
Cited by: 27
Author(s): Julia Esser‐von Bieren, Bruce T. Volpe, Duncan B. Sutherland, Jérôme Bürgi, J. Sjef Verbeek, Benjamin J. Marsland, Joseph F. Urban, Nicola L. Harris
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1005058

Utilizing Chemical Genomics to Identify Cytochrome b as a Novel Drug Target for Chagas Disease
Cited by: 47
Author(s): Shilpi Khare, Steven L. Roach, S. Whitney Barnes, Dominic Hoepfner, John R. Walker, Arnab K. Chatterjee, R. Jeffrey Neitz, Michelle R. Arkin, Case W. McNamara, Jaime Ballard, Yin Hwa Lai, Yue Fu, Valentina Molteni, Vince S. C. Yeh, James H. McKerrow, Richard Glynne, Frantisek Supek
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1005403

Gliding Associated Proteins Play Essential Roles during the Formation of the Inner Membrane Complex of Toxoplasma gondii
Cited by: 57
Author(s): Clare R. Harding, Saskia Egarter, Matthew Gow, Elena Jiménez-Ruiz, David Ferguson, Markus Meissner
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1005568

ABHD5/CGI-58, the Chanarin-Dorfman Syndrome Protein, Mobilises Lipid Stores for Hepatitis C Virus Production
Cited by: 25
Author(s): Gabrielle Vièyres, Kathrin Welsch, Gisa Gerold, Juliane Gentzsch, Sina Kahl, Florian W. R. Vondran, Lars Kaderali, Thomas Pietschmann
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1005602

Macropinosomes are Key Players in Early Shigella Invasion and Vacuolar Escape in Epithelial Cells
Cited by: 83
Author(s): Allon Weiner, Nora Mellouk, Noelia López-Montero, Yuen-Yan Chang, Célia Souque, Christine Schmitt, Jost Enninga
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1005669

Leishmania amazonensis Engages CD36 to Drive Parasitophorous Vacuole Maturation
Cited by: 39
Author(s): Kendi Okuda, Mei Song Tong, Dempsey Brian, Kathryn J. Moore, Ricardo T. Gazzinelli, Neal S. Silverman
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006224

ALPK1 controls TIFA/TRAF6-dependent innate immunity against heptose-1,7-bisphosphate of gram-negative bacteria
Cited by: 84
Author(s): Milica Milivojevic, Anne‐Sophie Dangeard, Christoph Kasper, Therese Tschon, Mario Emmenlauer, Claudine Pique, Pamela Schnupf, Julie Guignot, Cécile Arrieumerlou
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.ppat.1006308

A central region in the minor capsid protein of papillomaviruses facilitates viral genome tethering and membrane penetration for mitotic nuclear entry
Cited by: 51
Author(s): Inci Aydin, Ruth Villalonga-Planells, Lilo Greune, Matthew P. Bronnimann, Christine M. Calton, Miriam Becker, Kun Lai, Samuel K. Campos, M. Alexander Schmidt, Mario Schelhaas
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1006363

Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence
Cited by: 86
Author(s): Amy K. Barczak, Roi Avraham, Shantanu Singh, Samantha S. Luo, Wei Ran Zhang, Mark-Anthony Bray, Amelia E Hinman, Matthew P. Thompson, Raymond M. Nietupski, Aaron Golas, P.C. Montgomery, Michael G. FitzGerald, Roger S. Smith, Dylan W. White, Anna D. Tischler, Anne E. Carpenter, Deborah T. Hung
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1006823

Importin α1 is required for nuclear import of herpes simplex virus proteins and capsid assembly in fibroblasts and neurons
Cited by: 30
Author(s): Katinka Döhner, Ana Ramos-Nascimento, Dagmara Bialy, Fenja Anderson, Ana Hickford-Martinez, Franziska Rother, Thalea Koithan, Kathrin Rudolph, Anna Buch, Ute Prank, Anne Binz, Stefanie Hügel, Robert Jan Lebbink, Rob C. Hoeben, Enno Hartmann, Michael Bäder, Rudolf Bauerfeind, Beate Sodeik
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1006874

Lipid droplet formation in Mycobacterium tuberculosis infected macrophages requires IFN-γ/HIF-1α signaling and supports host defense
Cited by: 142
Author(s): Matthew Knight, Jonathan Braverman, Kaleb Asfaha, Karsten Gronert, Sarah A. Stanley
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1006914

Lung macrophage scavenger receptor SR-A6 (MARCO) is an adenovirus type-specific virus entry receptor
Cited by: 56
Author(s): Nicole Stichling, Maarit Suomalainen, Justin W. Flatt, Markus Schmid, Martin Pačesa, Silvio Hemmi, Wolfgang Jungraithmayr, Mareike D. Maler, Marina A. Freudenberg, Andreas Plückthun, Tobias May, Mario Köster, György Fejér, Urs F. Greber
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1007842

Separate domains of G3BP promote efficient clustering of alphavirus replication complexes and recruitment of the translation initiation machinery
Cited by: 44
Author(s): Benjamin Götte, Marc D. Panas, Kirsi Hellström, Lifeng Liu, Baila Samreen, Ola Larsson, Tero Ahola, Gerald M. McInerney
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.ppat.1009018

Defensin-driven viral evolution
Cited by: 8
Author(s): Karina Diaz, Ciara T Hu, Youngmee Sul, Beth A. Bromme, Nicolle D. Myers, Ksenia V. Skorohodova, Anshu P. Gounder, Jason G. Smith
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.ppat.1008548

Bartonella effector protein C mediates actin stress fiber formation via recruitment of GEF-H1 to the plasma membrane
Cited by: 9
Author(s): Simon Marlaire, Christoph Dehio
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.ppat.1009310

Uropathogenic E. coli induces DNA damage in the bladder
Cited by: 18
Author(s): Camille V. Chagneau, Clémence Massip, Nadège Bossuet-Greif, Christophe Fremez, Jean-Paul Motta, Ayaka Shima, Céline Besson, Pauline Le Faouder, Nicolas Cénac, Marie‐Paule Roth, Hélène Coppin, Maxime Fontanié, Patricia Martín, Jean-Philippe Nougayrède, Éric Oswald
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.ppat.1009771

CD97 stabilises the immunological synapse between dendritic cells and T cells and is targeted for degradation by the Salmonella effector SteD
Cited by: 13
Author(s): Ondřej Černý, Camilla Godlee, Romina Tocci, Nancy E. Cross, Haoran Shi, James C Williamson, Eric Alix, Paul J. Lehner, David W. Holden
Software Mentions: 1
Published: over 3 years ago

10.1155/2017/7097450

2,4-Thiazolidinedione Treatment Improves the Innate Immune Response in Dairy Goats with Induced Subclinical Mastitis
Cited by: 15
Author(s): Fernanda Rosa, J. S. Osorio, Erminio Trevisi, Francisco Yanqui-Rivera, Charles T. Estill, Massimo Bionaz
Software Mentions: 1
Published: almost 8 years ago

10.3390/polym12091992

Enhanced Antibiofilm Effects of N2 Plasma-Treated Buffer Combined with Antimicrobial Hexapeptides Against Plant Pathogens
Cited by: 3
Author(s): Bohyun Kim, Hyemi Seo, Jin Hyung Lee, Sung-Hyun Kim, Won Il Choi, Daekyung Sung, Eunpyo Moon
Software Mentions: 1
Published: about 4 years ago

10.1073/pnas.1905787116

The microbiota regulates murine inflammatory responses to toxin-induced CNS demyelination but has minimal impact on remyelination
Cited by: 24
Author(s): Christopher E McMurran, Alerie Guzman de la Fuente, Rosana Peñalva, Ofra Ben Menachem-Zidon, Yvonne Dombrowski, John Falconer, Ginez A. González, Chao Zhao, Fynn N. Krause, Adam M. H. Young, Julian L. Griffin, Clare A. Jones, Claire Hollins, Markus M. Heimesaat, Denise Fitzgerald, R. J. M. Franklin
Software Mentions: 1
Published: about 5 years ago

10.1073/pnas.1912307117

Robust hepatitis E virus infection and transcriptional response in human hepatocytes
Cited by: 57
Author(s): Daniel Todt, Martina Friesland, Nora Moeller, Dimas Praditya, Volker Kinast, Yannick Brüggemann, Leonard Knegendorf, Thomas Burkard, Joerg Steinmann, Rani Burm, Lieven Verhoye, Avista Wahid, Toni Luise Meister, Michael Engelmann, Vanessa Maria Pfankuche, Christina Puff, Florian W. R. Vondran, Wolfgang Baumgärtner, Philip Meuleman, Patrick Behrendt, Eike Steinmann
Software Mentions: 1
Published: almost 5 years ago

10.1073/pnas.2012854118

GRK5 is a regulator of fibroblast activation and cardiac fibrosis
Cited by: 27
Author(s): Akito Eguchi, Ryan C. Coleman, Kenneth S. Gresham, Erhe Gao, Jessica Ibetti, J. Kurt Chuprun, Walter J. Koch
Software Mentions: 1
Published: almost 4 years ago

10.1073/pnas.2019622118

<i>Drosophila</i> Sex Peptide controls the assembly of lipid microcarriers in seminal fluid
Cited by: 12
Author(s): S. Mark Wainwright, Ben R. Hopkins, Cláudia C. Mendes, Aashika Sekar, Benjamin Kroeger, Hellberg Jeeu., Fan S-J., Abigail Pavey, Pauline Marie, Aaron Leiblich, Irem Sepil, P. David Charles, Marie‐Laëtitia Thézénas, Román Fischer, Benedikt M. Kessler, Carina Gandy, Laura Corrigan, Raf Patel, Stuart Wigby, John F. Morris, Goberdhan Dci., Clive Wilson
Software Mentions: 1
Published: almost 4 years ago

10.1073/pnas.2021342118

CD20 as a gatekeeper of the resting state of human B cells
Cited by: 44
Author(s): Kathrin Kläsener, Julia Jellusova, Geoffroy Andrieux, Ulrich Salzer, Chiara Böhler, Sebastian N. Steiner, Jonas B. Albinus, Marco Cavallari, Beatrix Süß, Reinhard Voll, Melanie Boerries, Bernd Wollscheid, Michael Reth
Software Mentions: 1
Published: almost 4 years ago

10.1073/pnas.2021586118

Visualizing active viral infection reveals diverse cell fates in synchronized algal bloom demise
Cited by: 46
Author(s): Flora Vincent, Uri Sheyn, Ziv Porat, Daniella Schatz, Assaf Vardi
Software Mentions: 1
Published: over 3 years ago

10.1073/pnas.2023157118

ORF10–Cullin-2–ZYG11B complex is not required for SARS-CoV-2 infection
Cited by: 24
Author(s): Elijah L. Mena, Callie J. Donahue, Laura Pontano Vaites, Jie Li, Gergely Róna, Colin O’Leary, Luca Lignitto, Bearach Miwatani-Minter, João A. Paulo, Avantika Dhabaria, Beatrix Ueberheide, Steven P. Gygi, Michele Pagano, J. Wade Harper, Robert A. Davey, Stephen J. Elledge
Software Mentions: 1
Published: over 3 years ago

10.1073/pnas.2025053118

ALS- and FTD-associated missense mutations in TBK1 differentially disrupt mitophagy
Cited by: 45
Author(s): Olivia Harding, Chantell S. Evans, Junqiang Ye, Jonah Cheung, Tom Maniatis, Erika L.F. Holzbaur
Software Mentions: 1
Published: over 3 years ago

10.1073/pnas.2023051118

Restriction of SARS-CoV-2 replication by targeting programmed −1 ribosomal frameshifting
Cited by: 67
Author(s): Yu Sun, Laura Abriola, Rachel O. Niederer, Savannah F. Pedersen, Mia Madel Alfajaro, Valter Silva Monteiro, Craig B. Wilen, Ya Chi Ho, Wendy V. Gilbert, Yulia V. Surovtseva, Brett D. Lindenbach, Junjie U. Guo
Software Mentions: 1
Published: over 3 years ago

10.1098/rsos.170463

Role of growth rate on the orientational alignment of <i>Escherichia coli</i> in a slit
Cited by: 16
Author(s): Julian Sheats, Bianca Sclavi, Marco Cosentino Lagomarsino, Pietro Cicuta, Kevin D. Dorfman
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-019-45246-4

Multiparametric rapid screening of neuronal process pathology for drug target identification in HSP patient-specific neurons
Cited by: 26
Author(s): Kristina Rehbach, Jaideep Kesavan, Stefan Hauser, Swetlana Ritzenhofen, Johannes Jungverdorben, Rebecca Schüle, Lüdger Schöls, Michael Peitz, Oliver Brüstle
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46689-5

Automated cell boundary and 3D nuclear segmentation of cells in suspension
Cited by: 16
Author(s): Benjamin K. Kesler, Guoliang Li, Alexander Thiemicke, Rohit Venkat, Gregor Neuert
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-46682-y

Fluorescence Imaging of Actin Turnover Parses Early Stem Cell Lineage Divergence and Senescence
Cited by: 16
Author(s): Prakhar Mishra, D.C. Martin, Ioannis P. Androulakis, Prabhas V. Moghe
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48360-5

The systemic exercise-released chemokine lymphotactin/XCL1 modulates in vitro adult hippocampal precursor cell proliferation and neuronal differentiation
Cited by: 6
Author(s): Odette Leiter, Stefanie N. Bernas, Suse Seidemann, Rupert W. Overall, Cindy Horenburg, Susann Kowal, Gerd Kempermann, Tara L. Walker
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-49191-0

Human cardiac myosin light chain 4 (MYL4) mosaic expression patterns vary by sex
Cited by: 8
Author(s): Tony Y. Wang, Dan E. Arking, Joseph J. Maleszewski, Karen Fox-Talbot, Tim O. Nieuwenhuis, Lakshmi Santhanam, Renu Virmani, Avi Z. Rosenberg, Marc K. Halushka
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-51196-8

Adipocyte PU.1 knockout promotes insulin sensitivity in HFD-fed obese mice
Cited by: 11
Author(s): Denise E. Lackey, Felipe C.G. Reis, Roi Isaac, Rizaldy C. Zapata, Dalila El Ouarrat, Yun Sok Lee, Gautam Bandyopadhyay, Jachelle M. Ofrecio, Da Young Oh, Olivia Osborn
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52107-7

Chronic kidney disease exacerbates ischemic limb myopathy in mice via altered mitochondrial energetics
Cited by: 26
Author(s): Fabian N. Berru, Sarah E. Gray, Trace Thome, Ritwik Kumar, Zachary R. Salyers, Madeline Coleman, Dennis Le, Kerri O’Malley, Leonardo F. Ferreira, Scott A. Berceli, Salvatore T. Scali, Terence E. Ryan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52642-3

Spinal gastrin releasing peptide receptor expressing interneurons are controlled by local phasic and tonic inhibition
Cited by: 13
Author(s): Fábio Batista Freitag, Aikeremu Ahemaiti, Jon E. T. Jakobsson, Hannah M. Weman, Malin C. Lagerström
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53414-9

Co-stimulation with IL-1β and TNF-α induces an inflammatory reactive astrocyte phenotype with neurosupportive characteristics in a human pluripotent stem cell model system
Cited by: 79
Author(s): Tanja Hyvärinen, Sanna Hagman, Mervi Ristola, Lassi Sukki, Katariina Veijula, Joose Kreutzer, Pasi Kallio, Susanna Narkilahti
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53647-8

Functional characterization of human pluripotent stem cell-derived cortical networks differentiated on laminin-521 substrate: comparison to rat cortical cultures
Cited by: 69
Author(s): Tanja Hyvärinen, Anu Hyysalo, Fikret Emre Kapucu, Laura Aarnos, Andrey Vinogradov, Stephen J. Eglen, Laura Ylä‐Outinen, Susanna Narkilahti
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53652-x

Maternal overnutrition during critical developmental periods leads to different health adversities in the offspring: relevance of obesity, addiction and schizophrenia
Cited by: 18
Author(s): Gitalee Sarker, Kathrin Litwan, Rahel Kästli, Daria Peleg‐Raibstein
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53911-x

Automated detection and quantification of breast cancer brain metastases in an animal model using democratized machine learning tools
Cited by: 16
Author(s): Dina Sikpa, Jérémie P. Fouquet, Réjean Lebel, Phedias Diamandis, Maxime Richer, Martin Lepage
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-54741-7

Telomerase increasing compound protects hippocampal neurons from amyloid beta toxicity by enhancing the expression of neurotrophins and plasticity related genes
Cited by: 17
Author(s): Natalie Baruch-Eliyahu, Vladislav Rud, Alex Braiman, Esther Priel
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-54244-5

DeepSynth: Three-dimensional nuclear segmentation of biological images using neural networks trained with synthetic data
Cited by: 66
Author(s): Kenneth W. Dunn, Chichen Fu, David Joon Ho, Soonam Lee, Shuo Han, Paul Salama, Edward J. Delp
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-57793-2

The plant natural product 2-methoxy-1,4-naphthoquinone stimulates therapeutic neural repair properties of olfactory ensheathing cells
Cited by: 14
Author(s): M. Chen, Marie‐Laure Vial, Lydia Gee, Rohan A. Davis, James St John, Jenny Ekberg
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-58267-1

p53 dynamics in single cells are temperature-sensitive
Cited by: 12
Author(s): Marcel Jentsch, Petra Snyder, Caibin Sheng, Elena Cristiano, Alexander Loewer
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-57994-9

Nuclear bodies formed by polyQ-ataxin-1 protein are liquid RNA/protein droplets with tunable dynamics
Cited by: 12
Author(s): Sunyuan Zhang, Elizabeth Hinde, Molly Schneider, David A. Jans, Marie A. Bogoyevitch
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-58861-3

Fluopack screening platform for unbiased cellular phenotype profiling
Cited by: 12
Author(s): Kang Zhao, Ioannis K. Moutsatsos, Francesca Moretti, Philip S. Bergman, Xian Zhang, Beat Nyfeler, Christophe Antczak
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-58668-2

Statin-induced myopathic changes in primary human muscle cells and reversal by a prostaglandin F2 alpha analogue
Cited by: 16
Author(s): S Grunwald, Oliver Popp, Stefanie Haafke, Nicole Jedraszczak, Ulrike Grieben, Kathrin Saar, Giannino Patone, Wolfram Kreß, Elisabeth Steinhagen‐Thiessen, Gunnar Dittmar, Simone Spuler
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60246-5

Exploring the advantages of intensity-modulated proton therapy: experimental validation of biological effects using two different beam intensity-modulation patterns
Cited by: 7
Author(s): Duo Ma, Lawrence F. Bronk, M. Kerr, Mary Sobieski, Mei Chen, Changran Geng, Joycelyn Yiu, Xiaochun Wang, Narayan Sahoo, Wenhua Cao, Xiaodong Zhang, Clifford Stephan, Radhe Mohan, David R. Grosshans, Fada Guan
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60469-6

Streptonigrin at low concentration promotes heterochromatin formation
Cited by: 6
Author(s): Andre C. Loyola, Kevin Dao, Robin Shang, Lin Zhang, Pranabananda Dutta, Cody Fowler, Jinghong Li, Willis X. Li
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-60947-x

Pancreatic islets seeded in a novel bioscaffold forms an organoid to rescue insulin production and reverse hyperglycemia in models of type 1 diabetes
Cited by: 9
Author(s): Diana M. Elizondo, Nailah Z. D. Brandy, Ricardo Louzada da Silva, Tatiana Rodrigues de Moura, Jamel Ali, Dazhi Yang, Michael W. Lipscomb
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-61352-0

NBEAL1 controls SREBP2 processing and cholesterol metabolism and is a susceptibility locus for coronary artery disease
Cited by: 16
Author(s): Christian Bindesbøll, Aleksander Aas, Margrét H. Ögmundsdóttir, Serhiy Pankiv, Trine M. Reine, Roberto Zoncu, Anne Simonsen
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-61646-3

Development of an experimental method of systematically estimating protein expression limits in HEK293 cells
Cited by: 17
Author(s): Yoshihiro Mori, Yuki Yoshida, Ayano Satoh, Hisao Moriya
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-61725-5

Histopathological and immunohistochemical evaluation of cellular response to a woven and electrospun polydioxanone (PDO) and polycaprolactone (PCL) patch for tendon repair
Cited by: 19
Author(s): Mustafa S. Rashid, Jayesh Dudhia, Stephanie G. Dakin, Sarah Snelling, Roberta De Godoy, Pierre‐Alexis Mouthuy, Roger K. Smith, Mark E. Morrey, Andrew Carr
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-61808-3

Test-time augmentation for deep learning-based cell segmentation on microscopy images
Cited by: 109
Author(s): Nikita Moshkov, Botond Mathe, Attila Kertész‐Farkas, Réka Hollandi, Péter Horváth
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-62799-x

Axial stretch regulates rat tail collecting lymphatic vessel contractions
Cited by: 10
Author(s): Mohammad Razavi, Julie Leonard‐Duke, Becky A Hardie, J. Brandon Dixon, Rudolph L. Gleason
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65152-4

Drug repurposing of pyrimidine analogs as potent antiviral compounds against human enterovirus A71 infection with potential clinical applications
Cited by: 17
Author(s): Jialei Sun, Thinesshwary Yogarajah, Regina Ching Hua Lee, Parvinder Kaur, Masafumi Inoue, Yong Kiam Tan, Justin Jang Hann Chu
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67175-3

Human Adipocyte Conditioned Medium Promotes In Vitro Fibroblast Conversion to Myofibroblasts
Cited by: 10
Author(s): Mariam Y. El-Hattab, Yoshiaki Nagumo, Françoise A. Gourronc, Aloysius J. Klingelhutz, James A. Ankrum, Edward A. Sander
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67091-6

Lysosomal perturbations in human dopaminergic neurons derived from induced pluripotent stem cells with PARK2 mutation
Cited by: 29
Author(s): Justyna Okarmus, Helle Bogetofte, Sissel Ida Schmidt, Matias Ryding, Silvia García-López, Brent J. Ryan, Alberto Martínez‐Serrano, Poul Hyttel, Morten Meyer
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-67738-4

Quantitative analysis of tumor-specific BCL2 expression in DLBCL: refinement of prognostic relevance of BCL2
Cited by: 5
Author(s): Jin Roh, Hyungwoo Cho, Dok Hyun Yoon, Jung Yong Hong, A-Neum Lee, Hyeon Seok Eom, Hyewon Lee, Weon Seo Park, Jae Ho Han, Seong Hyun Jeong, Joon Seong Park, Hyo-Kyung Pak, So‐Woon Kim, Sangjin Kim, Cheolwon Suh, Jooryung Huh, Chan-Sik Park
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68138-4

SimpylCellCounter: an automated solution for quantifying cells in brain tissue
Cited by: 1
Author(s): Aneesh Bal, Fidel Maureira, Amy A. Arguello
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-69956-2

Long-term in vivo imaging reveals tumor-specific dissemination and captures host tumor interaction in zebrafish xenografts
Cited by: 18
Author(s): Nandini Asokan, Stephan Daetwyler, Stefanie N. Bernas, Christopher Schmied, Steffen Vogler, Katrin Lambert, Manja Wobus, Martin Wermke, Gerd Kempermann, Jan Huisken, Michael Brand, Martin Bornhäuser
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-72201-5

Histopathological imaging features- versus molecular measurements-based cancer prognosis modeling
Cited by: 3
Author(s): Sanguo Zhang, Yu Fan, Tingyan Zhong, Shuangge Ma
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-71781-6

NF-κB inhibition prevents acute shear stress-induced inflammation in the saphenous vein graft endothelium
Cited by: 22
Author(s): Amanda J. Ward, Gianni Angelini, Massimo Caputo, Paul C. Evans, Jason L. Johnson, M‐Saadeh Suleiman, Robert Tulloh, Sarah J. George, Mustafa Zakkar
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-73315-6

Cellular senescence-mediated exacerbation of Duchenne muscular dystrophy
Cited by: 33
Author(s): Hidetoshi Sugihara, Naomi Teramoto, Katsuyuki Nakamura, Takanori Shiga, Taku Shirakawa, Masafumi Matsuo, Masashi Ogasawara, Ichizo Nishino, Takashi Matsuwaki, Masugi Nishihara, Keitaro Yamanouchi
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-74080-2

Multivalent tumor suppressor adenomatous polyposis coli promotes Axin biomolecular condensate formation and efficient β-catenin degradation
Cited by: 12
Author(s): Tie-Mei Li, Jing Ren, Dylan Husmann, John P. Coan, Or Gozani, Katrin F. Chua
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75779-y

Tamoxifen induces hypercoagulation and alterations in ERα and ERβ dependent on breast cancer sub-phenotype ex vivo
Cited by: 5
Author(s): Kyrtania Pather, Tanya N. Augustine
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-78015-9

Generation of immune cell containing adipose organoids for in vitro analysis of immune metabolism
Cited by: 16
Author(s): Jacqueline Taylor, Julia Sellin, Lars Kuerschner, Lennart Krähl, Yasmin Majlesain, Irmgard Förster, Christoph Thiele, E. Weber
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-78432-w

Mammary epithelial morphogenesis in 3D combinatorial microenvironments
Cited by: 3
Author(s): Raphaëlle Luisier, Mehmet Girgin, Matthias P. Lütolf, Adrian Ranga
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-79966-9

Outer membrane vesicles containing OmpA induce mitochondrial fragmentation to promote pathogenesis of Acinetobacter baumannii
Cited by: 41
Author(s): Varnesh Tiku, Eric M. Kofoed, Donghong Yan, Jing Kang, Min Xu, Mike Reichelt, Ivan Đikić, Man‐Wah Tan
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-020-79637-9

TEM, SEM, and STEM-based immuno-CLEM workflows offer complementary advantages
Cited by: 9
Author(s): Viola Oorschot, Benjamin W. Lindsey, Jan Kaslin, Georg Ramm
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-81054-5

Self-agglomerated collagen patterns govern cell behaviour
Cited by: 7
Author(s): Aysegul Dede Eren, E. Eren, Twan J. S. Wilting, Jan de Boer, Hanneke Gelderblom, Jasper Foolen
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82140-4

Imaging of photoacoustic-mediated permeabilization of giant unilamellar vesicles (GUVs)
Cited by: 9
Author(s): Diogo A. Pereira, Alexandre D. Silva, Patrícia A. T. Martins, Ana P. Piedade, Dmitro Martynowych, David Veysset, Maria João Moreno, Carlos Serpa, Keith A. Nelson, Luis Arnaut
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82985-9

Estimation of three-dimensional chromatin morphology for nuclear classification and characterisation
Cited by: 3
Author(s): Priyanka Rana, Arcot Sowmya, Erik Meijering, Yang Song
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-82917-7

Small molecule inhibitor of OGG1 blocks oxidative DNA damage repair at telomeres and potentiates methotrexate anticancer effects
Cited by: 17
Author(s): Juan Miguel Baquero, Carlos Benitéz‐Buelga, Varshni Rajagopal, Zhiyao Zhao, Raúl Torres-Ruíz, Sarah Müller, Bishoy Hanna, Olga Loseva, Olov Wallner, Maurice Michel, Sandra Rodríguez‐Perales, Helge Gad, Torkild Visnes, Thomas Helleday, Javier Benı́tez, Ana Osorio
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83740-w

Human induced pluripotent stem cell-based platform for modeling cardiac ischemia
Cited by: 17
Author(s): Martta Häkli, Joose Kreutzer, Antti-Juhana Mäki, Hannu Välimäki, Henna Lappi, Heini Huhtala, Pasi Kallio, Katriina Aalto‐Setälä, Mari Pekkanen-Mattila
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-83537-x

Quantitative phase microscopy for non-invasive live cell population monitoring
Cited by: 18
Author(s): Shérazade Aknoun, Manuel Yonnet, Zied Djabari, Fanny Graslin, Mark Taylor, Thierry Pourcher, Wattellier Benoit, Philippe Pognonec
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-86315-x

IL-1β mediated nanoscale surface clustering of integrin α5β1 regulates the adhesion of mesenchymal stem cells
Cited by: 2
Author(s): Stephanie A. Maynard, Ekaterina Pchelintseva, Limor Zwi‐Dantsis, Anika Nagelkerke, Sahana Gopal, Yuri Korchev, Andrew Shevchuk, Molly M. Stevens
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-86549-9

An improved biolistic delivery and analysis method for evaluation of DNA and CRISPR-Cas delivery efficacy in plant tissue
Cited by: 16
Author(s): Kyle Miller, Alan L. Eggenberger, Keunsub Lee, Fei Liu, Minjeong Kang, Madison Drent, Andrew Ruba, Tyler Kirscht, Kan Wang, Shan Jiang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-88512-0

The Nek2 centrosome-mitotic kinase contributes to the mesenchymal state, cell invasion, and migration of triple-negative breast cancer cells
Cited by: 17
Author(s): Yainyrette Rivera-Rivera, Mihaela Marina, Shirley Jusino, Mi-Young Lee, Jaleisha Vélez Velázquez, Camille Chardón-Colón, Geraldine Vargas, Jaya Padmanabhan, Srikumar Chellappan, Harold I. Saavedra
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-88497-w

Saccharomyces boulardii modulates oxidative stress and renin angiotensin system attenuating diabetes-induced liver injury in mice
Cited by: 8
Author(s): Leticia Barssotti, Isabel Cristina Mallostro Emerich de Abreu, Ana Beatriz Pereira Brandão, Raquel Cristina Melo Ferreira de Albuquerque, Flávia Regina Ferreira, Miguel Angel Castillo Salgado, Danielle da Silva Dias, Kátia De Angelis, Rodrigo Yokota, Dulce Elena Casarini, Lívia Bruni de Souza, Carla Romano Taddei, Tatiana Sousa Cunha
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-88966-2

Automatic wavelet-based 3D nuclei segmentation and analysis for multicellular embryo quantification
Cited by: 3
Author(s): Tzu‐Ching Wu, Xu Wang, Linlin Li, Ye Bu, David M. Umulis
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-90252-0

Antimicrobial responses of peripheral and central nervous system glia against Staphylococcus aureus
Cited by: 3
Author(s): Indra N. Choudhury, Anu Chacko, Ali Delbaz, Mo Chen, Souptik Basu, James Anthony St John, Flavia Huygens, Jenny Ekberg
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-90701-w

Viral fibrotic scoring and drug screen based on MAPK activity uncovers EGFR as a key regulator of COVID-19 fibrosis
Cited by: 28
Author(s): Elmira Vagapova, Timofey Lebedev, Vladimir Prassolov
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-94217-1

SpheroidPicker for automated 3D cell culture manipulation using deep learning
Cited by: 11
Author(s): István Grexa, Ákos Diósdi, Mária Harmati, András Kriston, Nikita Moshkov, Krisztina Buzás, Vilja Pietiäinen, Krisztián Koós, Péter Horváth
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-94225-1

Rapid in vitro quantification of TDP-43 and FUS mislocalisation for screening of gene variants implicated in frontotemporal dementia and amyotrophic lateral sclerosis
Cited by: 4
Author(s): Lisa J. Oyston, Stephanie Ubiparipovic, Lauren Fitzpatrick, Marianne Hallupp, Lauren Boccanfuso, John B. Kwok, Carol Dobson‐Stone
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-95344-5

Acute ischemic stroke triggers a cellular senescence-associated secretory phenotype
Cited by: 18
Author(s): Coral Torres, Pascual Torres, Noemí Vidal, Manel Portero-Otı́n, Glòria Arqué, Francisco Purroy
Software Mentions: 1
Published: over 3 years ago

Projects: pypi: CellProfiler

Papers Mentioning CellProfiler 1,504