Ecosyste.ms: Papers

10.3389/fcell.2021.626404

Akt Is S-Palmitoylated: A New Layer of Regulation for Akt
Cited by: 12
Author(s): Matı́as Blaustein, Estefanía Piegari, Camila Martínez Calejman, Antonella Vila, Analía Amante, María Victoria Manese, Ari Zeida, Laurence Abrami, Mariela Veggetti, David A. Guertin, F. Gisou van der Goot, María M. Corvi, Alejandro Colman‐Lerner
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2020.604030

The Olfactory Organ Is Populated by Neutrophils and Macrophages During Early Development
Cited by: 6
Author(s): M. Fernanda Palominos, Kathleen E. Whitlock
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2020.00504

Focused Ultrasound Stimulates ER Localized Mechanosensitive PANNEXIN-1 to Mediate Intracellular Calcium Release in Invasive Cancer Cells
Cited by: 20
Author(s): Nan Sook Lee, Chi Woo Yoon, Qing Wang, San Moon, Kweon Mo Koo, Hayong Jung, Ruimin Chen, Laiming Jiang, Guoxing Lu, Antony Fernandez, Robert H. Chow, Andrew C. Weitz, Paul M. Salvaterra, Fabien Pinaud, K. Kirk Shung
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.673995

Generation of a Mouse Model to Study the Noonan Syndrome Gene Lztr1 in the Telencephalon
Cited by: 1
Author(s): Mary Jo Talley, Diana Nardini, Nisha Shabbir, Lisa A. Ehrman, Carlos E. Prada, Ronald R. Waclaw
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2020.00676

Host-Defense Peptides Caerin 1.1 and 1.9 Stimulate TNF-Alpha-Dependent Apoptotic Signals in Human Cervical Cancer HeLa Cells
Cited by: 17
Author(s): Guoying Ni, Shu Chen, Mo Chen, Jialing Wu, Baofeng Yang, Jing Yuan, Shelley F. Walton, Hejie Li, Ming Q. Wei, Yuejian Wang, Guoqiang Chen, Xiaosong Liu, Tianfang Wang
Software Mentions: 1
Published: over 4 years ago

10.3389/fcell.2021.672625

Loss of Primary Cilia Protein IFT20 Dysregulates Lymphatic Vessel Patterning in Development and Inflammation
Cited by: 2
Author(s): Delayna Paulson, Rebecca Harms, Cody Ward, Mackenzie Latterell, Gregory J. Pazour, Darci M. Fink
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2020.553099

Integrative Models of Histopathological Image Features and Omics Data Predict Survival in Head and Neck Squamous Cell Carcinoma
Cited by: 5
Author(s): Hao Zeng, Linyan Chen, Yeqian Huang, Yuling Luo, Xuelei Ma
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2021.723023

Allele-Specific Gene Editing Rescues Pathology in a Human Model of Charcot-Marie-Tooth Disease Type 2E
Cited by: 8
Author(s): Carissa M. Feliciano, Ken Wu, Hannah L. Watry, Chiara B.E. Marley, Gokul N. Ramadoss, Hana Y. Ghanim, Angela Z. Liu, Lyandysha V. Zholudeva, Todd C. McDevitt, Mario Saporta, Bruce R. Conklin, Luke M. Judge
Software Mentions: 1
Published: over 3 years ago

10.3389/fcell.2018.00041

Microenvironment-Induced Non-sporadic Expression of the AXL and cKIT Receptors Are Related to Epithelial Plasticity and Drug Resistance
Cited by: 21
Author(s): Tiina Jokela, Agnete S.T. Engelsen, Agata Rybicka, Fanny A. Pelissier Vatter, James C. Garbe, Masaru Miyano, Crina Tiron, Dan Ferariu, Lars A. Akslen, Martha R. Stampfer, James B. Lorens, Mark A. LaBarge
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2020.618898

Control of Podocyte and Glomerular Capillary Wall Structure and Elasticity by WNK1 Kinase
Cited by: 5
Author(s): Zhi Liu, Jin‐Ha Yoon, Chonlarat Wichaidit, Ankita B. Jaykumar, Hashem A. Dbouk, Addie E. Embry, Liping Liu, Joel M. Henderson, Audrey N. Chang, Melanie H. Cobb, R. Tyler Miller
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcell.2021.727079

A Functional Signature in the Developing Cerebellum: Evidence From a Preclinical Model of Autism
Cited by: 4
Author(s): María Berenice Soria-Ortiz, Pamela Reyes-Ortega, Ataúlfo Martı́nez-Torres, Daniel Reyes‐Haro
Software Mentions: 1
Published: about 3 years ago

10.3389/fcimb.2020.559915

The Coxiella burnetii T4SS Effector AnkF Is Important for Intracellular Replication
Cited by: 15
Author(s): Julian Pechstein, Jan Schulze-Luehrmann, Stephanie Bisle, Franck Cantet, Paul A. Beare, Martha Ölke, Matteo Bonazzi, Christian Berens, Anja Lührmann
Software Mentions: 1
Published: about 4 years ago

10.3389/fcimb.2020.593805

The Mitochondrial Fission Regulator DRP1 Controls Post-Transcriptional Regulation of TNF-α
Cited by: 18
Author(s): Fushan Gao, Mack B. Reynolds, Karla D. Passalacqua, Jonathan Z. Sexton, Basel H. Abuaita, Mary X. O’Riordan
Software Mentions: 1
Published: almost 4 years ago

10.3389/fcimb.2017.00048

High-Content Imaging Reveals Expansion of the Endosomal Compartment during Coxiella burnetii Parasitophorous Vacuole Maturation
Cited by: 23
Author(s): Carl L. Larson, Robert A. Heinzen
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2019.00451

Association of Plasmodium berghei With the Apical Domain of Hepatocytes Is Necessary for the Parasite's Liver Stage Development
Cited by: 6
Author(s): Lakshmi Balasubramanian, Vanessa Zuzarte‐Luís, Tabish Syed, Debakshi Mullick, Saptarathi Deb, Harish Ranga-prasad, Jana Meissner, Ana Luisa Teixeira de Almeida, Tobias Fürstenhaupt, Kaleem Siddiqi, Miguel Prudêncio, Cecília M. P. Rodrigues, Maria M. Mota, Varadharajan Sundaramurthy
Software Mentions: 1
Published: almost 5 years ago

10.3389/fncel.2021.648562

Structural Refinement of the Auditory Brainstem Neurons in Baboons During Perinatal Development
Cited by: 2
Author(s): Eun Jung Kim, Kaila Nip, Cynthia L. Blanco, Jun Hee Kim
Software Mentions: 1
Published: over 3 years ago

10.3389/fncel.2020.571216

Parvalbumin-Deficiency Accelerates the Age-Dependent ROS Production in Pvalb Neurons in vivo: Link to Neurodevelopmental Disorders
Cited by: 11
Author(s): Lucia Janickova, Beat Schwaller
Software Mentions: 1
Published: about 4 years ago

10.3389/fncel.2019.00412

Deactivation of ATP-Binding Cassette Transporters ABCB1 and ABCC1 Does Not Influence Post-ischemic Neurological Deficits, Secondary Neurodegeneration and Neurogenesis, but Induces Subtle Microglial Morphological Changes
Cited by: 6
Author(s): Daniel Manrique-Castano, Maryam Sardari, Tayana Silva de Carvalho, Thorsten R. Doeppner, Aurel Popa‐Wagner, Christoph Kleinschnitz, Andrew T. Chan, Dirk M. Hermann
Software Mentions: 1
Published: about 5 years ago

10.3389/fncel.2019.00467

Automated Live-Cell Imaging of Synapses in Rat and Human Neuronal Cultures
Cited by: 17
Author(s): Matthew V. Green, Thomas Pengo, Jonathan D. Raybuck, Tahmina Naqvi, Hannah M. McMullan, Jon E. Hawkinson, Ezequiel Marrón Fernández de Velasco, Brian S. Muntean, Kirill A. Martemyanov, Rachel Satterfield, Samuel Young, Stanley A. Thayer
Software Mentions: 1
Published: about 5 years ago

10.3389/fncel.2019.00297

PARK2 Mutation Causes Metabolic Disturbances and Impaired Survival of Human iPSC-Derived Neurons
Cited by: 43
Author(s): Helle Bogetofte, Pia Jensen, Matias Ryding, Sissel Ida Schmidt, Justyna Okarmus, Louise Ritter, Christina S. Worm, Michaela C. Hohnholt, Carla Azevedo, Laurent Roybon, Lasse K. Bak, Helle S. Waagepetersen, Brent J. Ryan, Richard Wade‐Martins, Martin R. Larsen, Morten Meyer
Software Mentions: 1
Published: over 5 years ago

10.3389/fncel.2020.00163

Reduced Fractalkine Levels Lead to Striatal Synaptic Plasticity Deficits in Huntington’s Disease
Cited by: 28
Author(s): Anya Kim, Esther García-García, Marco Straccia, Andrea Comella-Bolla, Andrés Miguez, Mercè Masana, Jordi Alberch, Josep M. Canals, Manuel J. Rodrı́guez
Software Mentions: 1
Published: over 4 years ago

10.3389/fncel.2021.754051

Editorial: Common Pathways Linking Neurodegenerative Diseases—The Role of Inflammation
Cited by: 6
Author(s): Małgorzata Kujawska, Andrii Domanskyi, Grzegorz Kreiner
Software Mentions: 1
Published: about 3 years ago

10.3389/fncel.2021.726479

Astrocyte Heterogeneity in Multiple Sclerosis: Current Understanding and Technical Challenges
Cited by: 13
Author(s): Chih Hung Lo, Mario Škarica, Mohammad Mansoor, Shaan Bhandarkar, Steven Toro, David Pitt
Software Mentions: 1
Published: over 3 years ago

10.3389/fncel.2018.00415

Validation and Optimization of an Image-Based Screening Method Applied to the Study of Neuronal Processes on Nanogrooves
Cited by: 8
Author(s): Alex J. Bastiaens, Sijia Xie, Dana A. M. Mustafa, Jean-Philippe Frimat, Jaap M.J. den Toonder, Regina Lüttge
Software Mentions: 1
Published: about 6 years ago

10.3389/fncel.2020.600441

Semi-Automated Cell and Tissue Analyses Reveal Regionally Specific Morphological Alterations of Immune and Neural Cells in a Porcine Middle Cerebral Artery Occlusion Model of Stroke
Cited by: 2
Author(s): Samantha E. Spellicy, Kelly M. Scheulin, Emily W Baker, Brian J. Jurgielewicz, Holly A Kinder, Elizabeth S. Waters, Janet A. Grimes, Steven L. Stice, Franklin D. West
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2021.721229

Dice-XMBD: Deep Learning-Based Cell Segmentation for Imaging Mass Cytometry
Cited by: 12
Author(s): Xiao Xu, Ying Qiao, Yudi Jiao, Na Fu, Wenxian Yang, Liansheng Wang, Rongshan Yu, Jiahuai Han
Software Mentions: 1
Published: about 3 years ago

10.3389/fgene.2015.00300

A new age in functional genomics using CRISPR/Cas9 in arrayed library screening
Cited by: 91
Author(s): Alexander Agrotis, Robin Ketteler
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2019.02459

Melanoma-Derived Exosomes Induce PD-1 Overexpression and Tumor Progression via Mesenchymal Stem Cell Oncogenic Reprogramming
Cited by: 37
Author(s): Edina Gyukity-Sebestyén, Mária Harmati, Gabriella Dobra, István Németh, Johanna Mihály, Ágnes Zvara, Éva Hunyadi‐Gulyás, Róbert L. Katona, István Nagy, Péter Horváth, Árpád Bálind, Ábel Szkalisity, Mária Kovács, Tibor Pankotai, Barbara N. Borsos, Miklós Erdélyi, Zsolt Szegletes, Zoltán Veréb, Edit I. Buzás, Lajos Kemény, Tamás Bı́ró, Krisztina Buzás
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2020.593177

Machine Learning to Quantify In Situ Humoral Selection in Human Lupus Tubulointerstitial Inflammation
Cited by: 2
Author(s): Andrew J Kinloch, Yuta Asano, Azam Mohsin, Carole Henry, Rebecca Abraham, Anthony Chang, Christine M. Labno, Patrick C. Wilson, Marcus R. Clark
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2019.01080

Nature vs. Nurture: Defining the Effects of Mesenchymal Stromal Cell Isolation and Culture Conditions on Resiliency to Palmitate Challenge
Cited by: 16
Author(s): Lauren K. Boland, Anthony J. Burand, Devlin Boyt, Hannah Dobroski, Lin Di, Jesse N. Liszewski, Michael V. Schrodt, Maria K Frazer, Donna A. Santillan, James A. Ankrum
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.743022

The Effects of COVID-19 on the Placenta During Pregnancy
Cited by: 35
Author(s): Habib Sadeghi Rad, Joan Röhl, Nataly Stylianou, Mark C. Allenby, Sajad Razavi Bazaz, Majid E. Warkiani, Fernando Guimarães, Vicki L. Clifton, Arutha Kulasinghe
Software Mentions: 1
Published: about 3 years ago

10.3389/fimmu.2021.640937

Strategies and Tools for Studying Microglial-Mediated Synapse Elimination and Refinement
Cited by: 9
Author(s): Raffaella Morini, Matteo Bizzotto, Fabio Perrucci, Fabia Filipello, Michela Matteoli
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2017.01539

Induction of Robust B Cell Responses after Influenza mRNA Vaccination Is Accompanied by Circulating Hemagglutinin-Specific ICOS+ PD-1+ CXCR3+ T Follicular Helper Cells
Cited by: 106
Author(s): Georg Lindgren, Sebastian Ols, Frank Liang, Elizabeth A. Thompson, Ang Lin, Fredrika Hellgren, Kapil Bahl, Shinu John, Olga Yuzhakov, Kimberly J. Hassett, Luis A. Brito, Hugh Salter, Giuseppe Ciaramella, Karin Loré
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2018.00858

Keratin Retraction and Desmoglein3 Internalization Independently Contribute to Autoantibody-Induced Cell Dissociation in Pemphigus Vulgaris
Cited by: 13
Author(s): Elisabeth Schlögl, Mariya Y. Radeva, Franziska Vielmuth, Camilla Schinner, Jens Waschke, Volker Spindler
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2018.01163

Cholesterol Crystal-Mediated Inflammation Is Driven by Plasma Membrane Destabilization
Cited by: 16
Author(s): Fei Shu, Jiahuan Chen, Xiaojie Ma, Yunzhou Fan, Li Yu, Wenfeng Zheng, Matthias Amrein, Tie Xia, Yan Shi
Software Mentions: 1
Published: over 6 years ago

10.3389/fimmu.2019.00200

Bullous Pemphigoid IgG Induces Cell Dysfunction and Enhances the Motility of Epidermal Keratinocytes via Rac1/Proteasome Activation
Cited by: 6
Author(s): Duerna Tie, Xia Da, Ken Natsuga, Nanako Yamada, Osamu Yamamoto, Eishin Morita
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2019.02588

Spatial Distribution of Macrophages During Callus Formation and Maturation Reveals Close Crosstalk Between Macrophages and Newly Forming Vessels
Cited by: 26
Author(s): Jonathan Stefanowski, Annemarie Lang, Ariana Rauch, Linus Aulich, M Köhler, Alexander Fiedler, Frank Buttgereit, Katharina Schmidt‐Bleek, Georg N. Duda, Timo Gaber, Raluca Niesner, Anja E. Hauser
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2018.02633

Cell Death Is Counteracted by Mitophagy in HIV-Productively Infected Astrocytes but Is Promoted by Inflammasome Activation Among Non-productively Infected Cells
Cited by: 36
Author(s): Diego S. Ojeda, Daniel Grasso, Javier Urquiza, Andreas Till, María I. Vaccaro, Jorge Quarleri
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2020.00152

Fish Macrophages Show Distinct Metabolic Signatures Upon Polarization
Cited by: 36
Author(s): Annelieke S. Wentzel, Joëlle J. E. Janssen, Vincent C.J. de Boer, Wouter G. van Veen, Maria Forlenza, G.F. Wiegertjes
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2019.01340

Imaging Mass Cytometry and Single-Cell Genomics Reveal Differential Depletion and Repletion of B-Cell Populations Following Ofatumumab Treatment in Cynomolgus Monkeys
Cited by: 19
Author(s): Diethilde Theil, Paul A. Smith, Catherine Huck, Yoann Gilbart, Algirdas Kakarieka, David Leppert, Céline Rauld, Cindy Schmid, Reto Baumgartner, Nathalie Stuber, Francisco Córdoba, Valérie Dubost, Katy Darribat, Magali Jivkov, Wilfried Frieauff, Rainer Kneuer, Markus Stoeckli, Stefan Reinker, Keith Mansfield, José M. Carballido, Philippe Couttet, Gisbert Weckbecker
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.03068

Cytoskeletal Protein 4.1R Is a Positive Regulator of the FcεRI Signaling and Chemotaxis in Mast Cells
Cited by: 5
Author(s): Lubica Dráberová, Helena Draberova, Lucie Potůčková, Ivana Hálová, Monika Bambousková, Narla Mohandas, Petr Dráber
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2021.666531

Inflammation Determines the Capacity of Allogenic Endothelial Cells to Regulate Human Treg Expansion
Cited by: 13
Author(s): Amy Cross, Julien Lion, Karine Poussin, Denis Glotz, Nuala Mooney
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2017.01229

Artificial Polysialic Acid Chains as Sialidase-Resistant Molecular-Anchors to Accumulate Particles on Neutrophil Extracellular Traps
Cited by: 16
Author(s): Christina E. Galuska, Jan A Dambon, Andrea Kühnle, Kim F Bornhöfft, Gerlinde Prem, Kristina Zlatina, Thomas Lütteke, Sebastian P. Galuska
Software Mentions: 1
Published: about 7 years ago

10.3389/fmicb.2018.01675

Host Factor Nucleoporin 93 Is Involved in the Nuclear Export of Influenza Virus RNA
Cited by: 9
Author(s): Yuri Furusawa, S. Yamada, Yoshihiro Kawaoka
Software Mentions: 1
Published: over 6 years ago

10.3389/fmolb.2021.647590

Enhanced UnaG With Minimal Labeling Artifact for Single-Molecule Localization Microscopy
Cited by: 3
Author(s): Sangyoon Ko, Jiwoong Kwon, Sang Hee Shim
Software Mentions: 1
Published: over 3 years ago

10.3389/fnmol.2018.00051

Acute Down-regulation of BDNF Signaling Does Not Replicate Exacerbated Amyloid-β Levels and Cognitive Impairment Induced by Cholinergic Basal Forebrain Lesion
Cited by: 17
Author(s): Marion T. Turnbull, Zoran Boskovic, Elizabeth J. Coulson
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnmol.2018.00393

Investigating Gene Function for Neuronal Survival After Metabolic Stress Using Semi-Automated Fluorescence Microscopy and Automated Image Analysis
Cited by: 0
Author(s): Kristin Wendland, Andreas Meisel, Philipp Mergenthaler
Software Mentions: 1
Published: about 6 years ago

10.3389/fncir.2019.00004

Two eARCHT3.0 Lines for Optogenetic Silencing of Dopaminergic and Serotonergic Neurons
Cited by: 5
Author(s): Alexandra Krol, Violeta G. López-Huerta, Taylor E. C. Corey, Karl Deisseroth, Jonathan T. Ting, Guoping Feng
Software Mentions: 1
Published: almost 6 years ago

10.3389/fnana.2020.00042

Region and Cell Type Distribution of TCF4 in the Postnatal Mouse Brain
Cited by: 24
Author(s): Hyojin Kim, Noah Berens, Nicole Ochandarena, Benjamin D. Philpot
Software Mentions: 1
Published: over 4 years ago

10.3389/fneur.2017.00335

Changes in Ionic Conductance Signature of Nociceptive Neurons Underlying Fabry Disease Phenotype
Cited by: 23
Author(s): Barbara Namer, Kirstin Ørstavik, Roland Schmidt, Norbert Mair, Inge Petter Kleggetveit, Maximillian Zeidler, Theresa Martha, Ellen Jørum, Martin Schmelz, Theodora Kalpachidou, Michaela Kress, Michiel Langeslag
Software Mentions: 1
Published: over 7 years ago

10.3389/fnins.2017.00737

Parkinson's Disease Skin Fibroblasts Display Signature Alterations in Growth, Redox Homeostasis, Mitochondrial Function, and Autophagy
Cited by: 47
Author(s): Joji M. Y. Teves, Vedanshi Bhargava, Konner R. Kirwan, Mandi J. Corenblum, Rebecca Justiniano, Georg T. Wondrak, Annadurai Anandhan, Andrew J. Flores, David Schipper, Zain Khalpey, James E. Sligh, Clara Curiel‐Lewandrowski, Scott J. Sherman, Lalitha Madhavan
Software Mentions: 1
Published: almost 7 years ago

10.3389/fnins.2020.00274

Exogenous Orexin-A Microinjected Into Central Nucleus of the Amygdala Modulates Feeding and Gastric Motility in Rats
Cited by: 15
Author(s): Tingting Jin, Zucheng Jiang, Xiying Luan, Zhuling Qu, Feifei Guo, Shengli Gao, Xu Luo, Xiangrong Sun
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2019.01100

A High-Content Screening Approach to Identify MicroRNAs Against Head and Neck Cancer Cell Survival and EMT in an Inflammatory Microenvironment
Cited by: 9
Author(s): Bruno Sangiorgi, Felipe Canto de Souza, Ildercílio Mota de Souza Lima, Josiane Lilian dos Santos Schiavinato, Amanda Cristina Corveloni, Carolina Hassibe Thomé, Wilson A. Silva, Vítor Marcel Faça, Dimas Tadeu Covas, Marco Antônio Zago, Rodrigo Alexandre Panepucci
Software Mentions: 1
Published: about 5 years ago

10.3389/fonc.2018.00446

miR-182 and miR-183 Promote Cell Proliferation and Invasion by Targeting FOXO1 in Mesothelioma
Cited by: 40
Author(s): Rui Suzuki, Vishwa Jeet Amatya, Kei Kushitani, Yuichiro Kai, Takahiro Kambara, Yukio Takeshima
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2017.00161

Functional Assay of Cancer Cell Invasion Potential Based on Mechanotransduction of Focused Ultrasound
Cited by: 11
Author(s): Andrew C. Weitz, Nan Sook Lee, Chi Woo Yoon, Adrineh Bonyad, Kyo Suk Goo, Seaok Kim, San Moon, Hayong Jung, Qifa Zhou, Robert H. Chow, K. Kirk Shung
Software Mentions: 1
Published: over 7 years ago

10.3389/fonc.2020.00553

Metabolic Heterogeneity in Patient Tumor-Derived Organoids by Primary Site and Drug Treatment
Cited by: 69
Author(s): Joe T. Sharick, Christine M. Walsh, Carley M. Sprackling, Cheri A. Pasch, Dan Pham, Karla Esbona, Alka Choudhary, Rebeca Garcia-Valera, Mark E. Burkard, Stephanie M. McGregor, Kristina A. Matkowskyj, Alexander A. Parikh, Ingrid M. Meszoely, Mark C. Kelley, Susan Tsai, Dustin A. Deming, Melissa C. Skala
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2017.00127

Enhancing the Oncolytic Activity of CD133-Targeted Measles Virus: Receptor Extension or Chimerism with Vesicular Stomatitis Virus Are Most Effective
Cited by: 19
Author(s): Dina Kleinlützum, Julia Hanauer, Alexander Muik, Kay-Martin Hanschmann, Sarah-Katharina Kays, Camilo Ayala-Bretón, Kah-Whye Peng, Michael D. Mühlebach, Tobias Abel, Christian J. Buchholz
Software Mentions: 1
Published: over 7 years ago

10.3389/fphar.2019.00214

A Model of Glucocorticoid Receptor Interaction With Coregulators Predicts Transcriptional Regulation of Target Genes
Cited by: 11
Author(s): Federico Monczor, Antonia Chatzopoulou, Carlos Daniel Zappia, René Houtman, Onno C. Meijer, Carlos P. Fitzsimons
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2018.01104

Conventional Anti-glioblastoma Chemotherapy Affects Proteoglycan Composition of Brain Extracellular Matrix in Rat Experimental Model in vivo
Cited by: 17
Author(s): Alexandra Y. Tsidulko, Cynthia Bezier, Gabin de La Bourdonnaye, Anastasia V. Suhovskih, Т. М. Панкова, G. M. Kazanskaya, С. В. Айдагулова, Elvira V. Grigorieva
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2019.00619

Network Biology Identifies Novel Regulators of CFTR Trafficking and Membrane Stability
Cited by: 9
Author(s): Cláudia Loureiro, João Dourado Santos, Ana I. Matos, Peter Jordan, Paulo Matos, Carlos M. Farinha, Francisco Pinto
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.604435

Enhanced Healthspan in Caenorhabditis elegans Treated With Extracts From the Traditional Chinese Medicine Plants Cuscuta chinensis Lam. and Eucommia ulmoides Oliv.
Cited by: 12
Author(s): Shimaa Mohamed Ali Sayed, Karsten Siems, Christian Schmitz‐Linneweber, Walter Luyten, Nadine Saul
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2021.679407

Dynamic Modeling of Mitochondrial Membrane Potential Upon Exposure to Mitochondrial Inhibitors
Cited by: 11
Author(s): Huan Yang, Wanda van der Stel, Randy Lee, Caroline Bauch, Sam Bevan, Paul Walker, Bob van de Water, Erik H.J. Danen, Joost B. Beltman
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2019.01303

Applications of Deep-Learning in Exploiting Large-Scale and Heterogeneous Compound Data in Industrial Pharmaceutical Research
Cited by: 35
Author(s): Laurianne David, Josep Arús‐Pous, Johan Karlsson, Ola Engkvist, Esben Jannik Bjerrum, Thierry Kogej, Jan M. Kriegl, Bernd Beck, Hongming Chen
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2018.00085

AdipoCount: A New Software for Automatic Adipocyte Counting
Cited by: 27
Author(s): Xu-Hao Zhi, Jiqiu Wang, Peng Lu, Junjing Jia, Hong Shen, Guang Ning
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40340-015-0010-9

Mesenchymal stromal cells support endothelial cell interactions in an intramuscular islet transplantation model
Cited by: 17
Author(s): Moa Fransson, Johan Brännström, Ida Rasmusson Duprez, Magnus Essand, Katarina Le Blanc, Olle Korsgren, Peetra U. Magnusson
Software Mentions: 1
Published: about 9 years ago

10.1186/s12977-016-0292-7

HIV-1 capsid uncoating initiates after the first strand transfer of reverse transcription
Cited by: 67
Author(s): Ophélie Cosnefroy, Philip J. Murray, Kate N. Bishop
Software Mentions: 1
Published: over 8 years ago

10.1177/2472555219879053

High-Content Imaging for Large-Scale Detection of Low-Affinity Extracellular Protein Interactions
Cited by: 10
Author(s): Laura D. Wood, Gavin J. Wright
Software Mentions: 1
Published: almost 5 years ago

10.1177/2472555220917115

High-Content Phenotypic Profiling in Esophageal Adenocarcinoma Identifies Selectively Active Pharmacological Classes of Drugs for Repurposing and Chemical Starting Points for Novel Drug Discovery
Cited by: 15
Author(s): Rebecca E. Hughes, Richard Elliott, Alison F. Munro, Ashraff Makda, J. Robert O’Neill, Ted R. Hupp, Neil O. Carragher
Software Mentions: 1
Published: over 4 years ago

10.1016/j.xpro.2021.100463

High-throughput generation of midbrain dopaminergic neuron organoids from reporter human pluripotent stem cells
Cited by: 10
Author(s): Lily Sarrafha, Gustavo M. Parfitt, Ricardo Reyes, Camille Goldman, Elena Coccia, Tatyana Kareva, Tim Ahfeldt
Software Mentions: 1
Published: over 3 years ago

10.1016/j.xpro.2021.100502

Protocol for automated production of human stem cell derived liver spheres
Cited by: 6
Author(s): Jose Meseguer-Ripolles, Alvile Kasarinaite, Baltasar Lucendo‐Villarin, David C. Hay
Software Mentions: 1
Published: over 3 years ago

10.1126/sciadv.aat3775

<i>Plasmodium</i> gametocytes display homing and vascular transmigration in the host bone marrow
Cited by: 68
Author(s): Mariana De Niz, Elamaran Meibalan, Pedro Mejia, Siyuan Ma, Nicolas M. B. Brancucci, Carolina Agop‐Nersesian, Rebecca Mandt, Priscilla Ngotho, Katie R. Hughes, Andrew P. Waters, Curtis Huttenhower, James R. Mitchell, Roberta Martinelli, Friedrich Frischknecht, Karl B. Seydel, Terrie E. Taylor, Danny A. Milner, Volker Heussler, Matthias Marti
Software Mentions: 1
Published: over 6 years ago

10.1038/sdata.2017.170

Protocols and characterization data for 2D, 3D, and slice-based tumor models from the PREDECT project
Cited by: 26
Author(s): Ronald de Hoogt, Marta Estrada, Suzana Vidic, Emma Davies, Annika Oßwald, Michaël Barbier, Vítor E. Santo, Kjersti Gjerde, Hanneke J. A. A. van Zoggel, Sami Blom, Di Meng, Katja Närhi, Erwin R. Boghaert, Catarina Brito, Yolanda T. Chong, Wolfgang Sommergruber, Heiko van der Kuip, Wytske M. van Weerden, Emmy W. Verschuren, John A. Hickman, Ralph Graeser
Software Mentions: 1
Published: about 7 years ago

10.1038/sdata.2018.116

High content screen for identifying small-molecule LC3B-localization modulators in a renal cancer cell line
Cited by: 6
Author(s): Likhitha Kolla, David Heo, Daniel P. Rosenberg, Sara A. Barlow, Anna A. Maximova, Emily E. Cassio, William J. Buchser
Software Mentions: 1
Published: over 6 years ago

10.1038/srep09038

Protein Traffic Disorders: an Effective High-Throughput Fluorescence Microscopy Pipeline for Drug Discovery
Cited by: 51
Author(s): Hugo M. Botelho, Inna Uliyakina, Nikhil T Awatade, Maria da Conceição Proença, Christian Tischer, Lalida Sirianant, Karl Kunzelmann, Rainer Pepperkok, Margarida D. Amaral
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12317

Compaction of rolling circle amplification products increases signal integrity and signal-to-noise ratio
Cited by: 26
Author(s): Carl-Magnus Clausson, Linda Arngården, Omer Ishaq, Axel Klaesson, Malte Kühnemund, Karin Grannas, Björn Koos, Xiaoyan Qian, Petter Ranefall, Tomasz Krzywkowski, Hjalmar Brismar, Mats Nilsson, Carolina Wählby, Ola Söderberg
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12540

Laser-scanning cytometry can quantify human adipocyte browning and proves effectiveness of irisin
Cited by: 33
Author(s): Endre Kristóf, Quang Minh Doan‐Xuan, Péter Bai, Zsolt Bacsó, László Fésüs
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13576

Evaluation of drug-targetable genes by defining modes of abnormality in gene expression
Cited by: 12
Author(s): Junseong Park, Jungsul Lee, Chulhee Choi
Software Mentions: 1
Published: about 9 years ago

10.1038/srep15029

The folate-coupled enzyme MTHFD2 is a nuclear protein and promotes cell proliferation
Cited by: 81
Author(s): Nina Gustafsson, Lisa Jarl, Diana Mahadessian, Laura Strittmatter, Angelika Schmidt, Nikhil Madhusudan, Jesper Tegnér, Emma Lundberg, Anna Asplund, Mohit Jain, Roland Nilsson
Software Mentions: 1
Published: about 9 years ago

10.1038/srep15222

Three-Dimensional Blood-Brain Barrier Model for in vitro Studies of Neurovascular Pathology
Cited by: 152
Author(s): Hansang Cho, Ji Hae Seo, Keith H.K. Wong, Yasukazu Terasaki, Joseph Park, Kiwan Bong, Ken Arai, Eng H. Lo, Daniel Irimia
Software Mentions: 1
Published: about 9 years ago

10.1038/srep09850

Spatial mapping of the biologic effectiveness of scanned particle beams: towards biologically optimized particle therapy
Cited by: 115
Author(s): Fada Guan, Lawrence F. Bronk, Uwe Titt, Steven H. Lin, Dragan Mirković, M. Kerr, Xiaorong Ronald Zhu, Jeffrey Dinh, Mary Sobieski, Clifford Stephan, C Peeler, Reza Taleei, Radhe Mohan, David R. Grosshans
Software Mentions: 1
Published: over 9 years ago

10.1038/srep18889

Drug response in organoids generated from frozen primary tumor tissues
Cited by: 74
Author(s): Alex J. Walsh, Rebecca S. Cook, Melinda E. Sanders, Carlos L. Arteaga, Melissa C. Skala
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21991

High-resolution Identification and Separation of Living Cell Types by Multiple microRNA-responsive Synthetic mRNAs
Cited by: 24
Author(s): Kiyoshi Endo, Karin Hayashi, Hirohide Saito
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21471

Deep Learning in Label-free Cell Classification
Cited by: 349
Author(s): Claire Lifan Chen, Ata Mahjoubfar, Li Chia Tai, Ian K. Blaby, Allen Huang, Kayvan Niazi, Bahram Jalali
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24055

Growth resumption from stationary phase reveals memory in Escherichia coli cultures
Cited by: 60
Author(s): Arvi Jõers, Tanel Tenson
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24356

CRISPR-Cas9D10A nickase-based genotypic and phenotypic screening to enhance genome editing
Cited by: 104
Author(s): Ting-Wei Chiang, Carlos le Sage, Delphine Larrieu, Mukerrem Demir, Stephen Jackson
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24637

Induction of Human iPSC-Derived Cardiomyocyte Proliferation Revealed by Combinatorial Screening in High Density Microbioreactor Arrays
Cited by: 52
Author(s): Drew M. Titmarsh, Nick Glass, Richard J. Mills, Alejandro Hidalgo, Ernst J. Wolvetang, Enzo R. Porrello, James E. Hudson, Justin J. Cooper-White
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25095

Image-based compound profiling reveals a dual inhibitor of tyrosine kinase and microtubule polymerization
Cited by: 7
Author(s): Kenji Tanabe
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24925

LIMK Regulates Tumor-Cell Invasion and Matrix Degradation Through Tyrosine Phosphorylation of MT1-MMP
Cited by: 54
Author(s): Emilie Lagoutte, Clémentine Villeneuve, Laurence Lafanechère, Claire M. Wells, Gareth E. Jones, Philippe Chavrier, Carine Rossé
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25187

Characterization of primary human hepatocyte spheroids as a model system for drug-induced liver injury, liver function and disease
Cited by: 471
Author(s): Catherine Bell, Delilah Hendriks, Sabrina Moro, Ewa Ellis, James Walsh, Anna Renblom, Lisa Fredriksson Puigvert, Anita C. A. Dankers, Frank Jacobs, Jan Snoeys, Rowena Sison-Young, Rosalind E. Jenkins, Åsa Nordling, Souren Mkrtchian, B. Kevin Park, Neil R. Kitteringham, Christopher E. Goldring, Volker M. Lauschke, Magnus Ingelman‐Sundberg
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28951

Capturing tumor complexity in vitro: Comparative analysis of 2D and 3D tumor models for drug discovery
Cited by: 178
Author(s): Kristin Stock, Marta Estrada, Suzana Vidic, Kjersti Gjerde, Albin Rudisch, Vítor E. Santo, Michaël Barbier, Sami Blom, Sharath C. Arundkar, Irwin Selvam, Annika Oßwald, Yan Stein, Sylvia Gruenewald, Catarina Brito, Wytske van Weerden, Varda Rotter, Erwin R. Boghaert, Moshe Oren, Wolfgang Sommergruber, Yolanda T. Chong, Ronald de Hoogt, Ralph Graeser
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28865

A systematic High-Content Screening microscopy approach reveals key roles for Rab33b, OATL1 and Myo6 in nanoparticle trafficking in HeLa cells
Cited by: 19
Author(s): Angela Panarella, Mariana G. Bexiga, George Galea, Elaine D O' Neill, Anna Salvati, Kenneth A. Dawson, Jeremy C. Simpson
Software Mentions: 1
Published: over 8 years ago

10.1038/srep29510

Endothelial cell alignment as a result of anisotropic strain and flow induced shear stress combinations
Cited by: 73
Author(s): Ravi Sinha, Séverine Le Gac, Nico Verdonschot, Albert van den Berg, Bart Koopman, Jeroen Rouwkema
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31566

Transgenic overexpression of VEGF-C induces weight gain and insulin resistance in mice
Cited by: 37
Author(s): Sinem Karaman, Maija Hollmén, Sun‐Young Yoon, H. Furkan Alkan, Kari Alitalo, Christian Wolfrum, Michael Detmar
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31360

A point mutation in AgrC determines cytotoxic or colonizing properties associated with phenotypic variants of ST22 MRSA strains
Cited by: 25
Author(s): Srikanth Mairpady Shambat, Nikolai Siemens, Ian R. Monk, Disha B. Mohan, Santhosh Mukundan, Karthickeyan Chella Krishnan, Sushma Prabhakara, Johanna Snäll, Angela Kearns, François Vandenesch, Mattias Svensson, Malak Kotb, B. Gopal, Gayathri Arakere, Anna Norrby‐Teglund
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31516

Systematic evaluation of sericin protein as a substitute for fetal bovine serum in cell culture
Cited by: 18
Author(s): Liyuan Liu, Jinhuan Wang, Shengchang Duan, Lei Chen, Hui Xiang, Yang Dong, Wang Wen
Software Mentions: 1
Published: over 8 years ago

10.1038/srep31694

A simple non-perturbing cell migration assay insensitive to proliferation effects
Cited by: 35
Author(s): Honor L. Glenn, Jacob Messner, Deirdre R. Meldrum
Software Mentions: 1
Published: over 8 years ago

10.1038/srep32412

Accurate Morphology Preserving Segmentation of Overlapping Cells based on Active Contours
Cited by: 58
Author(s): Csaba Molnár, Ian H. Jermyn, Zoltán Kató, Vesa Rahkama, Päivi Östling, Piia Mikkonen, Vilja Pietiäinen, Péter Horváth
Software Mentions: 1
Published: about 8 years ago

10.1038/srep34097

Stretch Injury of Human Induced Pluripotent Stem Cell Derived Neurons in a 96 Well Format
Cited by: 34
Author(s): Sydney A. Sherman, Jack Phillips, Joseph Costa, Frances S. Cho, Sevan R. Oungoulian, John D. Finan
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35434

Hepatic 3D spheroid models for the detection and study of compounds with cholestatic liability
Cited by: 111
Author(s): Delilah Hendriks, Lisa Fredriksson Puigvert, Simon Messner, Wolfgang Mortiz, Magnus Ingelman‐Sundberg
Software Mentions: 1
Published: about 8 years ago

10.1038/srep37201

Intronless WNT10B-short variant underlies new recurrent allele-specific rearrangement in acute myeloid leukaemia
Cited by: 13
Author(s): Francesca Lazzaroni, Luca Del Giacco, Daniele Biasci, Mauro Turrini, Laura Prosperi, R Brusamolino, Roberto Cairoli, Alessandro Beghini
Software Mentions: 1
Published: about 8 years ago