10.1186/s13630-019-0061-z

New software for automated cilia detection in cells (ACDC)
Cited by: 16
Author(s): Max C. Lauring, Tianqi Zhu, Wei Luo, Wenqi Wu, Feng Yu, Derek Toomre
Software Mentions: 2
Published: over 6 years ago

10.15252/embj.2020107182

Reciprocal priming between receptor tyrosine kinases at recycling endosomes orchestrates cellular signalling outputs
Cited by: 9
Author(s): Michael P. Smith, Harriet R. Ferguson, Jennifer Ferguson, Egor Zindy, Katarzyna M. Kowalczyk, Thomas Kedward, Christian Bates, Joseph Parsons, Joanne Watson, Sarah Chandler, Paul Fullwood, Stacey Warwood, David Knight, Robert B. Clarke, Chiara Francavilla
Software Mentions: 2
Published: over 4 years ago

10.1177/2472555218824280

The Academic Pill: How Academia Contributes to Curing Diseases
Cited by: 3
Author(s): Marc Bickle
Software Mentions: 2
Published: over 6 years ago

10.3390/molecules25040836

Rosmarinic Acid as a Candidate in a Phenotypic Profiling Cardio-/Cytotoxicity Cell Model Induced by Doxorubicin
Cited by: 7
Author(s): Qiao Zhang, Jing Li, Sha Peng, Yanling Zhang, Yanjiang Qiao
Software Mentions: 1
Published: almost 6 years ago

10.3390/molecules24183244

A Secreted Phospholipase A2 Induces Formation of Smooth Muscle Foam Cells Which Transdifferentiate to Macrophage-Like State
Cited by: 16
Author(s): Karina Cristina Giannotti, Sönke Weinert, Mariana Nascimento Viana, Elbio Leiguez, Thaís L.S. Araujo, Francisco Rafael Martins Laurindo, Bruno Lomonte, Ruediger C. Braun‐Dullaeus, Catarina Teixeira
Software Mentions: 1
Published: about 6 years ago

10.1186/s12868-016-0274-7

Histological characterization of orphan transporter MCT14 (SLC16A14) shows abundant expression in mouse CNS and kidney
Cited by: 10
Author(s): Sahar Roshanbin, Frida A. Lindberg, Emilia Lekholm, Mikaela M. Eriksson, Emelie Perland, Johan Åhlund, Amanda Raine, Robert Fredriksson
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules26185442

Uptake of Cell-Penetrating Peptide RL2 by Human Lung Cancer Cells: Monitoring by Electron Paramagnetic Resonance and Confocal Laser Scanning Microscopy
Cited by: 9
Author(s): Sergey S Ovcherenko, Olga Chinak, А. В. Чечушков, Sergey A. Dobrynin, Igor A. Kirilyuk, Olesya A. Krumkacheva, Vladimír Richter, Elena G. Bagryanskaya
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0210706

Viable and necrotic tumor assessment from whole slide images of osteosarcoma using machine-learning and deep-learning models
Cited by: 72
Author(s): Harish Babu Arunachalam, Rashika Mishra, Ovidiu Daescu, Kevin B Cederberg, Dinesh Rakheja, Anita Sengupta, David Léonard, Rami R. Hallac, Patrick J. Leavey
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules22091516

Ginsenoside Rg3 Prevents Oxidative Stress-Induced Astrocytic Senescence and Ameliorates Senescence Paracrine Effects on Glioblastoma
Cited by: 25
Author(s): Jingang Hou, Sun Chang Kim, Chang‐Keun Sung, Chulhee Choi
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-015-0376-x

Critical aspects of using bacterial cell viability assays with the fluorophores SYTO9 and propidium iodide
Cited by: 471
Author(s): Philipp Stiefel, Sabrina Schmidt-Emrich, Katharina Maniura‐Weber, Qun Ren
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0190623

Conditional deletion of RB1 in the Tie2 lineage leads to aortic valve regurgitation
Cited by: 4
Author(s): Marina Freytsis, Lauren Baugh, Zhiyi Liu, Irene Georgakoudi, Philip W. Hinds, Lauren D. Black, Gordon S. Huggins
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0077053

A High-Content Small Molecule Screen Identifies Sensitivity of Glioblastoma Stem Cells to Inhibition of Polo-Like Kinase 1
Cited by: 53
Author(s): Davide Danovi, Amos Folarin, Sabine Gogolok, Christine Ender, Ahmed M.O. Elbatsh, Pär G. Engström, Stefan H. Stricker, Sladjana Gagrica, Ana Ruxandra Georgian, Yu Ding, Kin Pong U, Kevin J. Harvey, Patrizia Ferretti, Patrick J. Paddison, Jane E. Preston, N. Joan Abbott, Paul Bertone, Austin Smith, Steven M. Pollard
Software Mentions: 1
Published: about 12 years ago

10.1186/s12911-020-01185-z

Histopathological distinction of non-invasive and invasive bladder cancers using machine learning approaches
Cited by: 19
Author(s): Peng-Nien Yin, Kishan Kc, Shishi Wei, Qi Yu, Rui Li, Anne R. Haake, Hiroshi Miyamoto, Feng Cui
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0096426

Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis
Cited by: 68
Author(s): Ville Härmä, Hannu-Pekka Schukov, Antti P. Happonen, Ilmari Ahonen, Johannes Virtanen, Harri Siitari, Malin Åkerfelt, Jyrki Lötjönen, Matthias Nees
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0009955

A Quantitative Image Cytometry Technique for Time Series or Population Analyses of Signaling Networks
Cited by: 28
Author(s): Yu Ichi Ozaki, Shinsuke Uda, Takeshi Saito, Jaehoon Chung, Hiroyuki Konishi, Shinya Kuroda
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0057142

WormSizer: High-throughput Analysis of Nematode Size and Shape
Cited by: 103
Author(s): Brad T. Moore, James M. Jordan, L. Ryan Baugh
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2334-14-472

Automated image-based assay for evaluation of HIV neutralization and cell-to-cell fusion inhibition
Cited by: 3
Author(s): Enas Sheik-Khalil, Mark-Anthony Bray, Gülşen Özkaya Şahin, Gabriella Scarlatti, Marianne Jansson, Anne E. Carpenter, Éva Mária Fenyõ
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-15-32

Maximizing Kolmogorov Complexity for accurate and robust bright field cell segmentation
Cited by: 6
Author(s): Hamid Mohamadlou, Joseph C. Shope, Nicholas S. Flann
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0196529

A murine glaucoma model induced by rapid in vivo photopolymerization of hyaluronic acid glycidyl methacrylate
Cited by: 20
Author(s): Chin-Lin Guo, Xin Qu, Nalini Rangaswamy, Barrett Leehy, Chuanxi Xiang, Dennis S. Rice, Ganesh Prasanna
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0224405

Tributyltin chloride (TBT) induces RXRA down-regulation and lipid accumulation in human liver cells
Cited by: 22
Author(s): Fabio Stossi, Radhika D. Dandekar, Hannah Johnson, Philip Lavere, Charles E. Foulds, Maureen G. Mancini, Michael A. Mancini
Software Mentions: 1
Published: about 6 years ago

10.1016/j.molcel.2018.08.043

POLE3-POLE4 Is a Histone H3-H4 Chaperone that Maintains Chromatin Integrity during DNA Replication
Cited by: 82
Author(s): Roberto Bellelli, Ondrej Beláň, V.E. Pye, Camille Clément, Sarah Maslen, J. Mark Skehel, Peter Cherepanov, Geneviève Almouzni, Simon J. Boulton
Software Mentions: 1
Published: about 7 years ago

10.1186/1476-4598-13-208

Induction of integrin α2 in a highly bone metastatic human prostate cancer cell line: roles of RANKL and AR under three-dimensional suspension culture
Cited by: 22
Author(s): Shabnam Ziaee, Leland W.K. Chung
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0040002

Indirect Effects of Wnt3a/β-Catenin Signalling Support Mouse Spermatogonial Stem Cells In Vitro
Cited by: 54
Author(s): Jonathan R. Yeh, Xiangfan Zhang, Makoto Nagano
Software Mentions: 1
Published: over 13 years ago

10.1186/s12943-018-0764-6

Nischarin regulates focal adhesion and Invadopodia formation in breast cancer cells
Cited by: 26
Author(s): Mazvita Maziveyi, Shaohong Dong, Somesh Baranwal, Suresh K. Alahari
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-15-1169

Integrative analysis of high-throughput RNAi screen data identifies the FER and CRKL tyrosine kinases as new regulators of the mitogenic ERK-dependent pathways in transformed cells
Cited by: 6
Author(s): Philippe Nizard, Frédéric Ezan, Dominique Bonnier, Nolwenn Le Meur, Sophie Langouët, Georges Baffet, Yannick Arlot‐Bonnemains, Nathalie Théret
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13041-020-00641-1

A microscopy-based small molecule screen in primary neurons reveals neuroprotective properties of the FDA-approved anti-viral drug Elvitegravir
Cited by: 3
Author(s): Simon F. Merz, C. Peter Bengtson, Clara Tepohl, Anna M. Hagenston, Hilmar Bading, Carlos Bas‐Orth
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0022868

High-Throughput Screening of Australian Marine Organism Extracts for Bioactive Molecules Affecting the Cellular Storage of Neutral Lipids
Cited by: 9
Author(s): James Rae, Frank Fontaine, Angela A. Salim, Harriet P. Lo, Robert J. Capon, Robert G. Parton, Sally Martin
Software Mentions: 1
Published: over 14 years ago

10.1186/s13041-021-00845-z

GDF11 expressed in the adult brain negatively regulates hippocampal neurogenesis
Cited by: 13
Author(s): Brittany A Mayweather, Sean M. Buchanan, Lee L. Rubin
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0175880

Cell cycle profiling by image and flow cytometry: The optimised protocol for the detection of replicational activity using 5-Bromo-2′-deoxyuridine, low concentration of hydrochloric acid and exonuclease III
Cited by: 7
Author(s): Anna Ligasová, Petr Konečný, Ivo Frydrych, Karel Koberna
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0189903

Bicarbonate buffered peritoneal dialysis fluid upregulates angiopoietin-1 and promotes vessel maturation
Cited by: 12
Author(s): Gwendolyn Eich, Mária Bartošová, Christian Tischer, Tanja Wlodkowski, Silvia Betti, Sebastian Pichl, Nicole Kraewer, Bruno Ranchin, Karel Vondrák, Max C. Liebau, Thilo Hackert, Claus Peter Schmitt
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13041-021-00848-w

Endosomal traffic and glutamate synapse activity are increased in VPS35 D620N mutant knock-in mouse neurons, and resistant to LRRK2 kinase inhibition
Cited by: 3
Author(s): Chelsie Kadgien, Anusha Kamesh, Austen J. Milnerwood
Software Mentions: 1
Published: about 4 years ago

10.1186/s12906-015-0860-8

Assessment of cytotoxicity exerted by leaf extracts from plants of the genus Rhododendron towards epidermal keratinocytes and intestine epithelial cells
Cited by: 15
Author(s): Ahmed Rezk, Alaa Al-Hashimi, Warren A. John, Hartwig Schepker, Matthias S. Ullrich, Klaudia Brix
Software Mentions: 1
Published: about 10 years ago

10.1111/acel.13171

Autophagy regulates the localization and degradation of p16^INK4a
Cited by: 18
Author(s): Philip Coryell, Supreet K. Goraya, Katherine A. Griffin, Margaret A. Redick, Samuel R. Sisk, Jeremy E. Purvis
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0178260

Delivery of the autofluorescent protein R-phycoerythrin by calcium phosphate nanoparticles into four different eukaryotic cell lines (HeLa, HEK293T, MG-63, MC3T3): Highly efficient, but leading to endolysosomal proteolysis in HeLa and MC3T3 cells
Cited by: 21
Author(s): Mathias Kopp, Olga Rotan, Chrisovalantis Papadopoulos, Nina Schulze, Hemmo Meyer, Matthias Epple
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0170415

Metabolic Imaging of Head and Neck Cancer Organoids
Cited by: 47
Author(s): Amy T. Shah, Tiffany M. Heaster, Melissa C. Skala
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0180810

Vitamin D-deficient mice have more invasive urinary tract infection
Cited by: 14
Author(s): Olof Hertting, Petra Lüthje, Devin P. Sullivan, Pontus Aspenström, Annelie Brauner
Software Mentions: 1
Published: over 8 years ago

10.1186/s13229-018-0228-2

Characterization and structure-activity relationships of indenoisoquinoline-derived topoisomerase I inhibitors in unsilencing the dormant Ube3a gene associated with Angelman syndrome
Cited by: 26
Author(s): Hyeong-Min Lee, Ellen P. Clark, M. Bram Kuijer, Mary Cushman, Yves Pommier, Benjamin D. Philpot
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0089189

Whole Animal Automated Platform for Drug Discovery against Multi-Drug Resistant Staphylococcus aureus
Cited by: 87
Author(s): Rajmohan Rajaraman, Beth Burgwyn Fuchs, Elamparithi Jayamani, Young-Hoon Kim, Jonah Larkins-Ford, Annie L. Conery, Frederick M. Ausubel, Eleftherios Mylonakis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0140730

Flow-Based Single Cell Deposition for High-Throughput Screening of Protein Libraries
Cited by: 3
Author(s): Cassandra Stowe, Arnold Pizzey, Tammy L. Kalber, Adam Badar, Mark F. Lythgoe, Martin Pulé
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0157644

AMP-Activated Kinase (AMPK) Activation by AICAR in Human White Adipocytes Derived from Pericardial White Adipose Tissue Stem Cells Induces a Partial Beige-Like Phenotype
Cited by: 28
Author(s): Omar Abdul‐Rahman, Endre Kristóf, Quang-Minh Doan-Xuan, András Vida, L Nagy, Ambrus Horváth, József Simon, T Marós, István Szentkirályi, Lehel Palotás, Tamás Debreceni, Péter Csizmadia, Tamás Szerafin, Tamás Fodor, Magdolna Szántó, Attila Tóth, Borbála Kiss, Zsolt Bacsó, Péter Bai
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0075317

Hedgehog/GLI Signaling Activates Suppressor of Cytokine Signaling 1 (SOCS1) in Epidermal and Neural Tumor Cells
Cited by: 20
Author(s): Sandra Laner-Plamberger, Florian Wolff, Alexandra Kaser-Eichberger, Stefan Swierczynski, Cornelia Hauser‐Kronberger, Anna‐Maria Frischauf, Thomas Eichberger
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0094032

Noninvasive Imaging of In Vivo MuRF1 Expression during Muscle Atrophy
Cited by: 2
Author(s): Wei Li, Mark D. Claypool, Annabelle M. Friera, John McLaughlin, Kristen A. Baltgalvis, Ira J. Smith, Taisei Kinoshita, Kathy White, Wayne Lang, Guillermo Godinez, Donald G. Payan, Todd M. Kinsella
Software Mentions: 1
Published: over 11 years ago

10.1186/1759-8753-1-13

Creation of a novel telomere-cutting endonuclease based on the EN domain of telomere-specific non-long terminal repeat retrotransposon, TRAS1
Cited by: 11
Author(s): Kazutoshi Yoshitake, Hideyuki Aoyagi, Haruhiko Fujiwara
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0027593

Cell Motility Dynamics: A Novel Segmentation Algorithm to Quantify Multi-Cellular Bright Field Microscopy Images
Cited by: 37
Author(s): Assaf Zaritsky, Sari Natan, Judith Horev, Inbal Hecht, Lior Wolf, Eshel Ben‐Jacob, Ilan Tsarfaty
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0164919

Growth-altering microbial interactions are responsive to chemical context
Cited by: 15
Author(s): Angela Liu, Anne M. Archer, Matthew B. Biggs, Jason A. Papin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0191102

Ultrasound-mediated delivery and distribution of polymeric nanoparticles in the normal brain parenchyma of a metastatic brain tumour model
Cited by: 38
Author(s): Habib Baghirov, Sofie Snipstad, Einar Sulheim, Sigrid Berg, Rune Hansen, Frits Thorsen, Ýrr Mørch, Catharina de Lange Davies, Andreas Åslund
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0095171

Increased Migration of Human Mesenchymal Stromal Cells by Autocrine Motility Factor (AMF) Resulted in Enhanced Recruitment towards Hepatocellular Carcinoma
Cited by: 43
Author(s): Juan Bayo, Esteban Fiore, Jorge B. Aquino, Mariana Malvicini, Manglio Rizzo, Estanislao Peixoto, Oscar Andriani, Laura Alaniz, Flavia Piccioni, Marcela F. Bolontrade, Osvaldo L. Podhajcer, Mariana Garcı́a, Guillermo Mazzolini
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0068450

High-Content Analysis of Sequential Events during the Early Phase of Influenza A Virus Infection
Cited by: 64
Author(s): Indranil Banerjee, Yohei Yamauchi, Ari Helenius, Péter Horváth
Software Mentions: 1
Published: over 12 years ago

10.1038/s41378-018-0020-7

Shaped 3D microcarriers for adherent cell culture and analysis
Cited by: 42
Author(s): Chueh‐Yu Wu, Daniel Stoecklein, Aditya Kommajosula, Jonathan Lin, Keegan Owsley, Baskar Ganapathysubramanian, Dino Di Carlo
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2121-11-5

Pirin delocalization in melanoma progression identified by high content immuno-detection based approaches
Cited by: 21
Author(s): Silvia Licciulli, Chiara Luise, Andrea Zanardi, Luca Giorgetti, Giuseppe Viale, Luisa Lanfrancone, Roberta Carbone, Myriam Alcalay
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0054068

A Novel Dictionary Based Computer Vision Method for the Detection of Cell Nuclei
Cited by: 4
Author(s): Jonas De Vylder, Jan Aelterman, Trees Lepez, Mado Vandewoestyne, Koen Douterloigne, Dieter Deforce, Wilfried Philips
Software Mentions: 1
Published: almost 13 years ago

10.3390/microorganisms9010156

Automation of Infectious Focus Assay for Determination of Filovirus Titers and Direct Comparison to Plaque and TCID50 Assays
Cited by: 16
Author(s): Patrick T. Keiser, Manu Anantpadma, Hilary Staples, Ricardo Carrión, Robert A. Davey
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0184973

Sevoflurane protects rat brain endothelial barrier structure and function after hypoxia-reoxygenation injury
Cited by: 19
Author(s): Tanja Restin, Marie-Elisabeth Kajdi, Martin Schläpfer, Birgit Roth Z’graggen, Christa Booy, Claudia Dumrese, Beatrice Beck‐Schimmer
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0083882

TLR9 and RIG-I Signaling in Human Endocervical Epithelial Cells Modulates Inflammatory Responses of Macrophages and Dendritic Cells In Vitro
Cited by: 21
Author(s): Ameya Sathe, K. J. Reddy
Software Mentions: 1
Published: almost 12 years ago

10.3390/microorganisms9020366

Streptococcus suis Induces Expression of Cyclooxygenase-2 in Porcine Lung Tissue
Cited by: 2
Author(s): Muriel Dresen, Josephine Schenk, Yenehiwot Berhanu Weldearegay, Désirée Vötsch, Wolfgang Baumgärtner, Peter Valentin‐Weigand, Andreas Nerlich
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12885-019-5694-1

An image-based assay to quantify changes in proliferation and viability upon drug treatment in 3D microenvironments
Cited by: 19
Author(s): Vasanth Siruvallur Murali, Bo-Jui Chang, Reto Fiolka, Gaudenz Danuser, Murat Can Çobanoğlu, Erik S. Welf
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0164645

A High-Content Larval Zebrafish Brain Imaging Method for Small Molecule Drug Discovery
Cited by: 10
Author(s): Harrison Liu, Steven Chen, Kevin Huang, Jeffrey Kim, Han Mo, Raffael Iovine, Julie Gendre, P. Pascal, Qiang Li, Yaping Sun, Zhiqiang Dong, Michelle R. Arkin, Su Guo, Bo Huang
Software Mentions: 1
Published: about 9 years ago

10.3390/mi12050550

Evaluation of the Effects of Solvents Used in the Fabrication of Microfluidic Devices on Cell Cultures
Cited by: 6
Author(s): Xiaopeng Wen, Seiichiro Takahashi, Kenji Hatakeyama, Ken‐ichiro Kamei
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0078212

An Open Source Based High Content Screening Method for Cell Biology Laboratories Investigating Cell Spreading and Adhesion
Cited by: 5
Author(s): André Schmandke, Antonio Schmandke, Maurianne A. Pietro, Martin E. Schwab
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0101718

Functional Characterization of Friedreich Ataxia iPS-Derived Neuronal Progenitors and Their Integration in the Adult Brain
Cited by: 24
Author(s): Matthew Bird, Karina Needham, Ann E. Frazier, Jorien van Rooijen, Joseph Y.-T. Leung, Shelley R. Hough, Mark Denham, Matthew E. Thornton, Clare L. Parish, Bryony A Nayagam, Martín F. Pera, David R. Thorburn, Lachlan H. Thompson, Mirella Dottori
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0194716

A Rac1-FMNL2 signaling module affects cell-cell contact formation independent of Cdc42 and membrane protrusions
Cited by: 15
Author(s): Hanna Grobe, Andrea Wüstenhagen, Christian Baarlink, Robert Grosse, Katharina Grikscheit
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0177921

Evidence for pleural epithelial-mesenchymal transition in murine compensatory lung growth
Cited by: 11
Author(s): Alexandra B. Ysasi, Willi L. Wagner, Cristian D. Valenzuela, Arne Kienzle, Andrew B. Servais, Robert D. Bennett, Akira Tsuda, Maximilian Ackermann, Steven J. Mentzer
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0092649

Interleukin-6 Secretion by Astrocytes Is Dynamically Regulated by PI3K-mTOR-Calcium Signaling
Cited by: 32
Author(s): Simone Codeluppi, Teresa Fernández-Zafra, Katalin Sándor, Jacob Kjell, Qingsong Liu, Mathew Abrams, Lar̀s Olson, Nathanael S. Gray, Camilla I. Svensson, Per Uhlén
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0069488

Substrate-Dependent Assembly of the Tat Translocase as Observed in Live Escherichia coli Cells
Cited by: 53
Author(s): Patrick P. Rose, Julia Fröbel, Peter L. Graumann, Matthias Müller
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0050730

Sonoporation Delivery of Monoclonal Antibodies against Human Papillomavirus 16 E6 Restores p53 Expression in Transformed Cervical Keratinocytes
Cited by: 38
Author(s): Melissa Togtema, Samuel Pichardo, Robert Jackson, Paul F. Lambert, Laura Curiel, Ingeborg Zehbe
Software Mentions: 1
Published: almost 13 years ago

10.3390/mi10110781

Automated Analysis of Platelet Aggregation on Cultured Endothelium in a Microfluidic Chip Perfused with Human Whole Blood
Cited by: 9
Author(s): Hugo J. Albers, Robert Passier, Albert van den Berg, Andries D. van der Meer
Software Mentions: 1
Published: about 6 years ago

10.1186/s12859-015-0782-y

CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels
Cited by: 49
Author(s): Kimmo Kartasalo, Risto-Pekka Pölönen, Marisa Ojala, Jyrki Rasku, Jukka Lekkala, Katriina Aalto‐Setälä, Pasi Kallio
Software Mentions: 1
Published: about 10 years ago

10.1111/acel.13108

Heterochromatin loss as a determinant of progerin‐induced DNA damage in Hutchinson–Gilford Progeria
Cited by: 24
Author(s): Alexandre Chojnowski, P.P. Ong, Mattheus Xing Rong Foo, David Liebl, Louis‐Peter Hor, Colin L. Stewart, Oliver Dreesen
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0122992

High Expression of KCa3.1 in Patients with Clear Cell Renal Carcinoma Predicts High Metastatic Risk and Poor Survival
Cited by: 51
Author(s): Maj Rabjerg, Aida Oliván-Viguera, Lars Hansen, Line Jensen, Linda Sevelsted-Møller, Steen Walter, Boye L. Jensen, Niels Marcussen, Ralf Köhler
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0188343

Defining external factors that determine neuronal survival, apoptosis and necrosis during excitotoxic injury using a high content screening imaging platform
Cited by: 8
Author(s): Ujval Anilkumar, Petronela Weisová, Jasmin Schmid, Tytus Bernaś, Heinrich J. Huber, Heiko Düßmann, Niamh M. C. Connolly, Jochen H M Prehn
Software Mentions: 1
Published: about 8 years ago

10.1016/j.mex.2015.02.007

Determination of collagen content within picrosirius red stained paraffin-embedded tissue sections using fluorescence microscopy
Cited by: 122
Author(s): Benjamin Vogel, Hanna Siebert, Ulrich Hofmann, Stefan Frantz
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12885-020-07420-0

Interferon-beta enhances sensitivity to gemcitabine in pancreatic cancer
Cited by: 10
Author(s): Amber Blaauboer, Stephanie Booy, Peter M. van Koetsveld, Bas Karels, Fadime Dogan, Suzanne van Zwienen, Casper H.J. van Eijck, Leo J. Hofland
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0003865

Robust Spatial Sensing of Mating Pheromone Gradients by Yeast Cells
Cited by: 105
Author(s): Travis I. Moore, Ching-Shan Chou, Qing Nie, Noo Li Jeon, Tongxun Yi
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0018189

A PiggyBac-Based Recessive Screening Method to Identify Pluripotency Regulators
Cited by: 64
Author(s): Ge Guo, Yue Huang, Peter Humphreys, Xiaozhong Wang, Austin Smith
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0012212

Filamin A Binds to CCR2B and Regulates Its Internalization
Cited by: 21
Author(s): Laura Minsaas, Jesús Planagumà, Michael T. Madziva, Beate F. Krakstad, Míriam Masià-Balagué, Arieh A. Katz, Anna M. Aragay
Software Mentions: 1
Published: over 15 years ago

10.1088/2050-6120/aae6f8

Development of a fluorescence-based cellular apoptosis reporter
Cited by: 4
Author(s): Lucy A Balderstone, John C. Dawson, Arkadiusz Welman, Alan Serrels, Stephen R. Wedge, Valerie G. Brunton
Software Mentions: 1
Published: about 7 years ago

10.1186/s12885-020-07258-6

Mitochondrial apurinic/apyrimidinic endonuclease 1 enhances mtDNA repair contributing to cell proliferation and mitochondrial integrity in early stages of hepatocellular carcinoma
Cited by: 11
Author(s): Veronica Bazzani, Arianna Barchiesi, Dorota Radecka, Riccardo Pravisani, Antonio Guadagno, Carla Di Loreto, Umberto Baccarani, Carlo Vascotto
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0161813

The Neurite Outgrowth Inhibitory Nogo-A-Δ20 Region Is an Intrinsically Disordered Segment Harbouring Three Stretches with Helical Propensity
Cited by: 2
Author(s): Viviane Zelenay, Michael E. Arzt, Stefan Bibow, Martin E. Schwab, Roland Riek
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0153487

The Timing of Raf/ERK and AKT Activation in Protecting PC12 Cells against Oxidative Stress
Cited by: 26
Author(s): Qunxiang Ong, Shunling Guo, Liting Duan, Kai Zhang, Eleanor Ann Collier, Bianxiao Cui
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0103203

Dynamic Recruitment of Protein Tyrosine Phosphatase PTPD1 to EGF Stimulation Sites Potentiates EGFR Activation
Cited by: 18
Author(s): Pedro Roda-Navarro, Philippe I. H. Bastiaens
Software Mentions: 1
Published: over 11 years ago

10.3390/metabo11060344

Hyperosmolarity Triggers the Warburg Effect in Chinese Hamster Ovary Cells and Reveals a Reduced Mitochondria Horsepower
Cited by: 6
Author(s): Jorgelindo da Veiga Moreira, Lenny De Staercke, Pablo César Martínez-Basilio, Sandrine Gauthier-Thibodeau, Léa Montégut, Laurent Schwartz, Mario Jolicœur
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0161965

A Genome-Wide siRNA Screen Implicates Spire1/2 in SipA-Driven Salmonella Typhimurium Host Cell Invasion
Cited by: 16
Author(s): Daniel Andritschke, Sabrina Dilling, Mario Emmenlauer, Tobias Welz, Fabian Schmich, Benjamin Misselwitz, Pauli Rämö, Klemens Rottner, Eugen Kerkhoff, Teiji Wada, Josef Penninger, Niko Beerenwinkel, Péter Horváth, Christoph Dehio, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0123912

The Non-Catalytic Domains of Drosophila Katanin Regulate Its Abundance and Microtubule-Disassembly Activity
Cited by: 12
Author(s): Kyle D. Grode, Stephen L. Rogers
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0192463

Accurately tracking single-cell movement trajectories in microfluidic cell sorting devices
Cited by: 12
Author(s): Jenny Jeong, Nicholas J. Frohberg, Enlu Zhou, Todd Sulchek, Peng Qiu
Software Mentions: 1
Published: almost 8 years ago

10.3390/metabo10060226

Restoration of Physiological Levels of Uric Acid and Ascorbic Acid Reroutes the Metabolism of Stored Red Blood Cells
Cited by: 12
Author(s): Manon Bardyn, Jingkui Chen, Michaël Dussiot, David Crettaz, L Schmid, Emmanuel Längst, Pascal Amireault, Jean‐Daniel Tissot, Mario Jolicœur, Michel Prudent
Software Mentions: 1
Published: over 5 years ago

10.1118/1.4966032

A preclinical microbeam facility with a conventional x-ray tube
Cited by: 19
Author(s): Stefan Bartzsch, Craig Cummings, Stephan Eismann, Uwe Oelfke
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2105-10-75

Edge detection in microscopy images using curvelets
Cited by: 66
Author(s): Tobias Gebäck, Petros Koumoutsakos
Software Mentions: 1
Published: over 16 years ago

10.18632/aging.102941

Peroxisomal abnormalities and catalase deficiency in Hutchinson-Gilford Progeria Syndrome
Cited by: 9
Author(s): Xiaojing Mao, Pratima Bharti, Abhirami Thaivalappil, Kan Cao
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-019-0864-6

Polarizing receptor activation dissociates fibroblast growth factor 2 mediated inhibition of myelination from its neuroprotective potential
Cited by: 13
Author(s): Katja Thümmler, Eran Rom, Thomas Zeis, Maren Lindner, Sarah Brunner, John Cole, Diana Arseni, Steve Mücklisch, Julia M. Edgar, Nicole Schaeren‐Wiemers, Avner Yayon, Christopher Linington
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0089136

Rac1 Participates in Thermally Induced Alterations of the Cytoskeleton, Cell Morphology and Lipid Rafts, and Regulates the Expression of Heat Shock Proteins in B16F10 Melanoma Cells
Cited by: 24
Author(s): Burçin Güngör, Imre Gombos, Tim Crul, Ferhan Ayaydin, László Szabó, Zsolt Török, Lajos Mátés, László Vı́gh, Ibolya Horváth
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0148469

High-Throughput Method for Automated Colony and Cell Counting by Digital Image Analysis Based on Edge Detection
Cited by: 86
Author(s): Priya Choudhry
Software Mentions: 1
Published: almost 10 years ago

10.3390/medicina56010024

Challenges and Opportunities in Preclinical Research of Synthetic Cannabinoids for Pain Therapy
Cited by: 16
Author(s): Bogdan Ionel Tamba, Gabriela Dumitrița Stanciu, Cristina M. Uritu, Elena Rezuş, Raluca Ştefănescu, Cosmin Teodor Mihai, Andrei Luca, Gabriela Rusu-Zota, Maria‐Magdalena Leon‐Constantin, Elena Cojocaru, Bogdan Gafton, Teodora Alexa-Stratulat
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0200342

Cardiac regenerative capacity is age- and disease-dependent in childhood heart disease
Cited by: 23
Author(s): Alexandra Traister, Rachana Patel, Anita Huang, Sarvatit Patel, Julia Plakhotnik, Jae Eun Lee, Maria Gonzalez Medina, Chris Welsh, Prutha Ruparel, Libo Zhang, Mark K. Friedberg, Jason T. Maynes, John G. Coles
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0088683

deltaNp63 Has a Role in Maintaining Epithelial Integrity in Airway Epithelium
Cited by: 44
Author(s): Ari Jón Arason, Hulda R. Jónsdóttir, Skarphéđinn Halldórsson, Berglind Eva Benediktsdóttir, Jón Þór Bergþórsson, Sævar Ingþórsson, Ólafur Baldursson, Satrajit Sinha, Thorarinn Gudjonsson, Magnús K. Magnússon
Software Mentions: 1
Published: almost 12 years ago

10.1016/j.mtbio.2020.100051

Additive manufactured, highly resilient, elastic, and biodegradable poly(ester)urethane scaffolds with chondroinductive properties for cartilage tissue engineering
Cited by: 18
Author(s): Sandra Camarero‐Espinosa, Clarissa Tomasina, Andrea Roberto Calore, Lorenzo Moroni
Software Mentions: 1
Published: over 5 years ago

10.3390/md18020088

The Marine Seagrass Halophila stipulacea as a Source of Bioactive Metabolites against Obesity and Biofouling
Cited by: 15
Author(s): Sawssen Bel Mabrouk, Mariana Reis, Maria Lígia Sousa, Tiago Ribeiro, Joana R. Almeida, Sandra Pereira, Jorge T. Antunes, Filipa Rosa, Vı́tor Vasconcelos, Lotfi Achour, Adnane Kacem, Ralph Urbatzka
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0144404

Extending Ripley’s K-Function to Quantify Aggregation in 2-D Grayscale Images
Cited by: 15
Author(s): Mohamed Amgad, Anri Itoh, Marco Man Kin Tsui
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0162540

Passive Entrapment of Tumor Cells Determines Metastatic Dissemination to Spinal Bone and Other Osseous Tissues
Cited by: 9
Author(s): Thomas Broggini, Andras Piffko, Christian J. Hoffmann, Christoph Harms, Peter Vajkoczy, Marcus Czabanka
Software Mentions: 1
Published: about 9 years ago

10.3390/md17040243

Broad-Spectrum Anti-Adhesive Coating Based on an Extracellular Polymer from a Marine Cyanobacterium
Cited by: 13
Author(s): Bruna Costa, Rita Mota, Paula Parreira, Paula Tamagnini, M. Cristina L. Martins, Fabíola Costa
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-015-1540-2

Monitoring therapeutic efficacy of sunitinib using [18F]FDG and [18F]FMISO PET in an immunocompetent model of luminal B (HER2-positive)-type mammary carcinoma
Cited by: 15
Author(s): Benoît Thézé, Nicholas Bernards, Audrey Beynel, Stéphan Bouet, Bertrand Kühnast, Irène Buvat, Bertrand Tavitian, Raphaël Boisgard
Software Mentions: 1
Published: over 10 years ago