Ecosyste.ms: Papers

10.3390/ijms22073740

RAD51 Inhibition Induces R-Loop Formation in Early G1 Phase of the Cell Cycle
Cited by: 5
Author(s): Zuzana Naščáková, Barbora Boleslavska, Václav Urban, Anna Oravetzova, Edita Vlachova, Pavel Janscak, Jana Dobrovolná
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-018-31726-6

High-Reynolds Microfluidic Sorting of Large Yeast Populations
Cited by: 7
Author(s): Eliezer Keinan, Ayelet Chen Abraham, Anna Cohen, Alexander I. Alexandrov, Reshef Mintz, Merav Cohen, Dana Reichmann, Daniel Kaganovich, Yaakov Nahmias
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms140815810

Highly Sensitive Automated Method for DNA Damage Assessment: Gamma-H2AX Foci Counting and Cell Cycle Sorting
Cited by: 34
Author(s): Laia Hernández, Mariona Terradas, Marga Martı́n, Laura Tusell, Anna Genescà
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-017-15092-3

Interactive phenotyping of large-scale histology imaging data with HistomicsML
Cited by: 43
Author(s): Michael Nalisnik, Mohamed Amgad, Sanghoon Lee, Sameer H. Halani, José E. Velázquez Vega, Daniel J. Brat, David Gutman, Lee Cooper
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15466-7

ABMA, a small molecule that inhibits intracellular toxins and pathogens by interfering with late endosomal compartments
Cited by: 14
Author(s): Yu Wu, Véronique Pons, Amélie Goudet, Laetitia Panigai, Annette Fischer, Jo-Ana Herweg, Sabrina Kali, Robert A. Davey, Jérôme Laporte, Céline Bouclier, Rahima Yousfi, Céline Aubenque, Goulven Merer, Emilie Gobbo, Roman Lopez, Cynthia Gillet, Sandrine Cojean, Michel R. Popoff, Pascal Clayette, Roger Le Grand, Claire Boulogne, Noël Tordo, Emmanuel Lemichez, Philippe M. Loiseau, Thomas Rudel, D. Sauvaire, Jean‐Christophe Cintrat, Daniel Gillet, Julien Barbier
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15798-4

Systems pathology by multiplexed immunohistochemistry and whole-slide digital image analysis
Cited by: 119
Author(s): Sami Blom, Lassi Paavolainen, Dmitrii Bychkov, Riku Turkki, Petra Mäki-Teeri, Annabrita Hemmes, Katja Välimäki, Johan Lundin, Olli Kallioniemi, Teijo Pellinen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15901-9

Loss of lamin B1 is a biomarker to quantify cellular senescence in photoaged skin
Cited by: 68
Author(s): Audrey S. Wang, P.P. Ong, Alexandre Chojnowski, Carlos Clavel, Oliver Dreesen
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-15885-6

Andy’s Algorithms: new automated digital image analysis pipelines for FIJI
Cited by: 40
Author(s): Andrew M. K. Law, Julia Yin, Lesley Castillo, Alex Young, Catherine Piggin, Samuel Rogers, C. Elizabeth Caldon, Andrew Burgess, Ewan K.A. Millar, Sandra A. O’Toole, David Gallego‐Ortega, Christopher J. Ormandy, Samantha Oakes
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-17012-x

Construction of a system using a deep learning algorithm to count cell numbers in nanoliter wells for viable single-cell experiments
Cited by: 7
Author(s): Takashi Kamatani, Koichi Fukunaga, Keizo Miyata, Yoshitaka Shirasaki, Junji Tanaka, Rie Baba, Masako Matsusaka, Naoyuki Kamatani, Kazuyo Moro, Tomoko Betsuyaku, Shunsuke Uemura
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17204-5

QuPath: Open source software for digital pathology image analysis
Cited by: 3,202
Author(s): Peter Bankhead, Maurice B. Loughrey, José A Fernández, Yvonne Dombrowski, Darragh G. McArt, Philip D. Dunne, Stephen McQuaid, Ronan T. Gray, Liam Murray, Helen Coleman, Jacqueline James, Manuel Salto-Tellez, Peter Hamilton
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-017-17832-x

Leveraging ectopic Hsp90 expression to assay the presence of tumor cells and aggressive tumor phenotypes in breast specimens
Cited by: 14
Author(s): Brian T. Crouch, Helen Murphy, Stella Belonwu, Amy F. Martinez, Jennifer E. Gallagher, Allison Hall, Mary Scott Soo, Marianne Lee, Philip F. Hughes, Timothy Haystead, Nirmala Ramanujam
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-018-19539-z

High content analysis identifies unique morphological features of reprogrammed cardiomyocytes
Cited by: 23
Author(s): Matthew D. Sutcliffe, Philip M. Tan, Antonio Fernandez-Perez, Young Nam, Nikhil V. Munshi, Jeffrey J. Saucerman
Software Mentions: 1
Published: almost 7 years ago

10.1523/ENEURO.0477-19.2019

MANF Ablation Causes Prolonged Activation of the UPR without Neurodegeneration in the Mouse Midbrain Dopamine System
Cited by: 23
Author(s): Emmi Pakarinen, Tatiana Danilova, Vootele Võikar, Piotr Chmielarz, Petteri Piepponen, Mikko Airavaara, Märt Saarma, Maria Lindahl
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep09038

Protein Traffic Disorders: an Effective High-Throughput Fluorescence Microscopy Pipeline for Drug Discovery
Cited by: 51
Author(s): Hugo M. Botelho, Inna Uliyakina, Nikhil T Awatade, Maria da Conceição Proença, Christian Tischer, Lalida Sirianant, Karl Kunzelmann, Rainer Pepperkok, Margarida D. Amaral
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-018-23691-x

Protein-bound NAD(P)H Lifetime is Sensitive to Multiple Fates of Glucose Carbon
Cited by: 74
Author(s): Joe T. Sharick, Peter F. Favreau, Amani A. Gillette, Sophia M. Sdao, Matthew J. Merrins, Melissa C. Skala
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24194-5

IL23 and TGF-ß diminish macrophage associated metastasis in pancreatic carcinoma
Cited by: 15
Author(s): Syed M. Hussain, Leighton Reed, Bradley A. Krasnick, Gustavo A. Miranda-Carboni, Ryan C. Fields, Ye Bi, Abul Elahi, Abidemi Ajidahun, Paxton V. Dickson, Jeremiah L. Deneve, William G. Hawkins, David Shibata, Evan S. Glazer
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24916-9

AutoCellSeg: robust automatic colony forming unit (CFU)/cell analysis using adaptive image segmentation and easy-to-use post-editing techniques
Cited by: 33
Author(s): Arif ul Maula Khan, Angelo Torelli, Ivo Wolf, Norbert Gretz
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-24119-2

Super-resolution imaging reveals the sub-diffraction phenotype of Zellweger Syndrome ghosts and wild-type peroxisomes
Cited by: 27
Author(s): Kareem Soliman, Fabian Göttfert, Hendrik Rosewich, Sven Thoms, Jutta Gärtner
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-26701-0

Glucose challenge metabolomics implicates medium-chain acylcarnitines in insulin resistance
Cited by: 42
Author(s): Christoph Nowak, Susanne Hetty, Samira Salihović, Casimiro Castillejo-López, Andrea Ganna, Naomi L. Cook, Corey D. Broeckling, Jessica E. Prenni, Xia Shen, Vilmantas Giedraitis, Johan Ärnlöv, Lars Lind, Christian Berne, Johan Sundström, Erik Ingelsson
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-27346-9

An immortalised mesenchymal stem cell line maintains mechano-responsive behaviour and can be used as a reporter of substrate stiffness
Cited by: 28
Author(s): Asier Galarza Torre, Joshua E Shaw, A.K. Wood, Hamish T. J. Gilbert, Oana Dobre, Paul G. Genever, Keith Brennan, Stephen M. Richardson, Joe Swift
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-27058-0

A single cell high content assay detects mitochondrial dysfunction in iPSC-derived neurons with mutations in SNCA
Cited by: 44
Author(s): Daniel Little, Christin Luft, Olukunbi Mosaku, Maëlle Lorvellec, Zhi Yao, Sébastien Paillusson, János Kriston-Vizi, Sonia Gandhi, Andrey Y. Abramov, Robin Ketteler, Michael J. Devine, Paul Gissen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-28090-w

Maternal Vitamin D Prevents Abnormal Dopaminergic Development and Function in a Mouse Model of Prenatal Immune Activation
Cited by: 41
Author(s): Weiling Luan, Luke A. Hammond, Stéphanie Vuillermot, Urs Meyer, Darryl W. Eyles
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29060-y

Dynamic Loading and Tendon Healing Affect Multiscale Tendon Properties and ECM Stress Transmission
Cited by: 52
Author(s): Benjamin R. Freedman, Ashley B. Rodriguez, Ryan J. Leiphart, Joseph B. Newton, Ehsan Ban, Joseph J. Sarver, Robert L. Mauck, Vivek B. Shenoy
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-29817-5

Dysregulation in Actin Cytoskeletal Organization Drives Increased Stiffness and Migratory Persistence in Polyploidal Giant Cancer Cells
Cited by: 42
Author(s): Botai Xuan, Deepraj Ghosh, Emily Cheney, Elizabeth M. Clifton, Michelle Dawson
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30682-5

MicroRNA-224 down-regulates Glycine N-methyltransferase gene expression in Hepatocellular Carcinoma
Cited by: 18
Author(s): Jan Jong Hung, Chung Hsien Li, Ching‐Hua Yeh, Pin Cheng Huang, Cheng Fang, Yen-Fu Chen, Kuo Jui Lee, Chih‐Hung Chou, Hsin Yun Cheng, Hsien Da Huang, Marcelo Chen, Ting Fen Tsai, Anya Maan Yuh Lin, Chia-Hung Yen, Ann-Ping Tsou, Yu‐Chang Tyan, Yi Ming Arthur Chen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30776-0

Image-Assisted Microvessel-on-a-Chip Platform for Studying Cancer Cell Transendothelial Migration Dynamics
Cited by: 24
Author(s): Cristina Bertulli, Magda Gerigk, Nicholas Piano, Ye Liu, Duo Zhang, Thomas Müller, Tuomas P. J. Knowles, Yan Yan Shery Huang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-31253-4

Graves’ orbitopathy occurs sex-independently in an autoimmune hyperthyroid mouse model
Cited by: 24
Author(s): A Schlüter, Ulrich Flögel, Salvador Díaz‐Cano, Gina-Eva Görtz, Kerstin Stähr, Michael Oeverhaus, Svenja Plöhn, Stefan Mattheis, Lars C. Moeller, Stephan Lang, Nikolaos E. Bechrakis, J. Paul Banga, Anja Eckstein, Utta Berchner‐Pfannschmidt
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-31408-3

Histamine causes endothelial barrier disruption via Ca2+-mediated RhoA activation and tension at adherens junctions
Cited by: 39
Author(s): Daniela Kugelmann, Lukas T. Rotkopf, Mariya Y. Radeva, Alexander García‐Ponce, Elias Walter, Jens Waschke
Software Mentions: 1
Published: about 6 years ago

10.1523/ENEURO.0370-20.2020

κ Opioid Receptor-Dynorphin Signaling in the Central Amygdala Regulates Conditioned Threat Discrimination and Anxiety
Cited by: 10
Author(s): Madison A. Baird, TingTing Y. Hsu, Rachel Wang, Barbara Juarez, Larry S. Zweifel
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-018-32722-6

Human hepatic 3D spheroids as a model for steatosis and insulin resistance
Cited by: 102
Author(s): Mikael Kozyra, Inger Johansson, Åsa Nordling, Shahid Ullah, Volker M. Lauschke, Magnus Ingelman‐Sundberg
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32694-7

A short isoform of ATG7 fails to lipidate LC3/GABARAP
Cited by: 9
Author(s): Margrét H. Ögmundsdóttir, Valerie Fock, L. Sooman, Vivian Pogenberg, Ramile Dilshat, Christian Bindesbøll, Helga M. Ögmundsdóttir, Anne Simonsen, Matthias Wilmanns, Eiríkur Steingrímsson
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34455-y

Deep Analysis of Mitochondria and Cell Health Using Machine Learning
Cited by: 31
Author(s): Atena Zahedi, Vincent On, Rattapol Phandthong, Angela Chaili, Guadalupe Remark, Bir Bhanu, Prue Talbot
Software Mentions: 1
Published: about 6 years ago

10.1523/ENEURO.0462-19.2019

A New Mouse Line Reporting the Translation of Brain-Derived Neurotrophic Factor Using Green Fluorescent Protein
Cited by: 9
Author(s): Erin Wosnitzka, Xinsheng Nan, Jeff Nan, Pedro Chacón-Fernández, Lothar Kußmaul, Michael Schuler, Bastian Hengerer, Yves‐Alain Barde
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-018-37251-w

BLNCR is a long non-coding RNA adjacent to integrin beta-1 that is rapidly lost during epidermal progenitor cell differentiation
Cited by: 11
Author(s): Sabine E.J. Tanis, Elif Senem Köksal, Jessie A.G.L. van Buggenum, Klaas W. Mulder
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-37554-y

Identification of Key Signaling Pathways Orchestrating Substrate Topography Directed Osteogenic Differentiation Through High-Throughput siRNA Screening
Cited by: 11
Author(s): Tuğba Özdemir, Daniel T. Bowers, Xiang Zhan, Debashis Ghosh, Justin L. Brown
Software Mentions: 1
Published: almost 6 years ago

10.1523/ENEURO.0367-18.2018

Zic4-Lineage Cells Increase Their Contribution to Visual Thalamic Nuclei during Murine Embryogenesis If They Are Homozygous or Heterozygous for Loss of Pax6 Function
Cited by: 1
Author(s): Ziwen Li, Thomas Pratt, David J. Price
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-39376-y

Disruption of APOL1-miR193a Axis Induces Disorganization of Podocyte Actin Cytoskeleton
Cited by: 20
Author(s): Vinod Kumar, Nitpriya Paliwal, Kamesh Ayasolla, Himanshu Vashistha, Alok Jha, Nirupama Chandel, Sheetal Chowdhary, Moin A. Saleem, Ashwani Malhotra, Praveen N. Chander, Karl Skorecki, Pravin C. Singhal
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41061-z

HNF4α is a novel regulator of intestinal glucose-dependent insulinotropic polypeptide
Cited by: 6
Author(s): Romain Girard, Mathieu Darsigny, Christine M. Jones, Faïza Maloum-Rami, Yves Gélinas, André C. Carpentier, Mathieu Laplante, Nathalie Perreault, François Boudreau
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-39538-y

The immunosuppressant drug azathioprine restrains adipogenesis of muscle Fibro/Adipogenic Progenitors from dystrophic mice by affecting AKT signaling
Cited by: 17
Author(s): Alessio Reggio, Filomena Spada, Marco Rosina, Giorgia Massacci, Alessandro Zuccotti, Claudia Fuoco, Cesare Gargioli, Luisa Castagnoli, Gianni Cesareni
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-40852-8

Clathrin Adaptor Complex-interacting Protein Irc6 Functions through the Conserved C-Terminal Domain
Cited by: 4
Author(s): Huajun Zhou, Giancarlo Costaguta, Grégory S. Payne
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41057-9

TLP-mediated global transcriptional repression after double-strand DNA breaks slows down DNA repair and induces apoptosis
Cited by: 9
Author(s): Haruo Suzuki, Mayumi Okamoto-Katsuyama, Tetsufumi Suwa, Ryo Maeda, Tomohiro Tamura, Yuki Yamaguchi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-42131-y

High Skp2 expression is associated with a mesenchymal phenotype and increased tumorigenic potential of prostate cancer cells
Cited by: 20
Author(s): Šárka Šimečková, Zuzana Kahounová, Radek Fedr, Ján Remšík, Eva Slabáková, Tereza Suchánková, Jiřina Procházková, Jan Bouchal, Gvantsa Kharaishvili, Milan Král, Petr Beneš, Karel Souček
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-42892-6

Pharmacological boost of DNA damage response and repair by enhanced biogenesis of DNA damage response RNAs
Cited by: 42
Author(s): Ubaldo Gioia, Sofia Francia, Matteo Cabrini, Silvia Brambillasca, Flavia Michelini, Corey Winston Jones-Weinert, Fabrizio d’Adda di Fagagna
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43137-2

Automated Segmentation of Fluorescence Microscopy Images for 3D Cell Detection in human-derived Cardiospheres
Cited by: 39
Author(s): Massimo Salvi, Umberto Morbiducci, Francesco Amadeo, Rosaria Santoro, Francesco Angelini, Isotta Chimenti, Diana Nada Caterina Massai, Elisa Messina, Alessandro Giacomello, Maurizio Pesce, Filippo Molinari
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-42845-z

Development and Validation of a Pathology Image Analysis-based Predictive Model for Lung Adenocarcinoma Prognosis - A Multi-cohort Study
Cited by: 6
Author(s): Xin Luo, Yin Shen, Lin Yang, Junya Fujimoto, Yikun Yang, César A. Moran, Neda Kalhor, Annikka Weissferdt, Yang Xie, Adi F. Gazdar, John D. Minna, Ignacio I. Wistuba, Yousheng Mao, Guanghua Xiao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45217-9

Quantification of fixed adherent cells using a strong enhancer of the fluorescence of DNA dyes
Cited by: 19
Author(s): Anna Ligasová, Karel Koberna
Software Mentions: 1
Published: over 5 years ago

10.1038/sdata.2018.116

High content screen for identifying small-molecule LC3B-localization modulators in a renal cancer cell line
Cited by: 6
Author(s): Likhitha Kolla, David Heo, Daniel P. Rosenberg, Sara A. Barlow, Anna A. Maximova, Emily E. Cassio, William J. Buchser
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.46595

Ceapins block the unfolded protein response sensor ATF6α by inducing a neomorphic inter-organelle tether
Cited by: 42
Author(s): Sandra E. Torres, Ciara M Gallagher, Lars Plate, Meghna Gupta, Christina R Liem, Xiaoyan Guo, Ruilin Tian, Robert M. Stroud, Martin Kampmann, Jonathan S. Weissman, Peter Walter
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.58020

The RIF1-long splice variant promotes G1 phase 53BP1 nuclear bodies to protect against replication stress
Cited by: 14
Author(s): Lotte P. Watts, Toyoaki Natsume, Yuichiro Saito, Javier Garzón, Qianqian Dong, Lora Boteva, Nick Gilbert, Masato T. Kanemaki, Shin‐ichiro Hiraga, Anne Donaldson
Software Mentions: 1
Published: about 4 years ago

10.1038/sdata.2017.170

Protocols and characterization data for 2D, 3D, and slice-based tumor models from the PREDECT project
Cited by: 26
Author(s): Ronald de Hoogt, Marta Estrada, Suzana Vidic, Emma Davies, Annika Oßwald, Michaël Barbier, Vítor E. Santo, Kjersti Gjerde, Hanneke J. A. A. van Zoggel, Sami Blom, Di Meng, Katja Närhi, Erwin R. Boghaert, Catarina Brito, Yolanda T. Chong, Wolfgang Sommergruber, Heiko van der Kuip, Wytske M. van Weerden, Emmy W. Verschuren, John A. Hickman, Ralph Graeser
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.38536

Spatial patterning of liver progenitor cell differentiation mediated by cellular contractility and Notch signaling
Cited by: 30
Author(s): Kerim B. Kaylan, Ian C. Berg, Matthew J. Biehl, Aidan Brougham-Cook, Ishita Jain, Sameed M Jamil, Lauren H Sargeant, Nicholas J Cornell, Lori T. Raetzman, Gregory H. Underhill
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.28377

Initial elevations in glutamate and dopamine neurotransmission decline with age, as does exploratory behavior, in LRRK2 G2019S knock-in mice
Cited by: 66
Author(s): Mattia Volta, Dayne Beccano-Kelly, Sarah A. Paschall, Stefano Cataldi, Sarah E MacIsaac, Naila Kuhlmann, Chelsie Kadgien, Igor Tatarnikov, Jesse Fox, Jaskaran Khinda, Emma Mitchell, Sabrina Bergeron, Heather L. Melrose, Matthew J. Farrer, Austen J. Milnerwood
Software Mentions: 1
Published: about 7 years ago

10.1186/s40340-015-0010-9

Mesenchymal stromal cells support endothelial cell interactions in an intramuscular islet transplantation model
Cited by: 17
Author(s): Moa Fransson, Johan Brännström, Ida Rasmusson Duprez, Magnus Essand, Katarina Le Blanc, Olle Korsgren, Peetra U. Magnusson
Software Mentions: 1
Published: about 9 years ago

10.1523/ENEURO.0335-17.2018

Susceptibility to Oxidative Stress Is Determined by Genetic Background in Neuronal Cell Cultures
Cited by: 7
Author(s): Mattias Günther, Faiez Al Nimer, Fredrik Piehl, Mårten Risling, Tiit Mathiesen
Software Mentions: 1
Published: over 6 years ago

10.1126/sciadv.aat3775

<i>Plasmodium</i> gametocytes display homing and vascular transmigration in the host bone marrow
Cited by: 68
Author(s): Mariana De Niz, Elamaran Meibalan, Pedro Mejia, Siyuan Ma, Nicolas M. B. Brancucci, Carolina Agop‐Nersesian, Rebecca Mandt, Priscilla Ngotho, Katie R. Hughes, Andrew P. Waters, Curtis Huttenhower, James R. Mitchell, Roberta Martinelli, Friedrich Frischknecht, Karl B. Seydel, Terrie E. Taylor, Danny A. Milner, Volker Heussler, Matthias Marti
Software Mentions: 1
Published: over 6 years ago

10.1016/j.xpro.2021.100502

Protocol for automated production of human stem cell derived liver spheres
Cited by: 6
Author(s): Jose Meseguer-Ripolles, Alvile Kasarinaite, Baltasar Lucendo‐Villarin, David C. Hay
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.31922

Combinatorial programming of human neuronal progenitors using magnetically-guided stoichiometric mRNA delivery
Cited by: 6
Author(s): Shiva Azimi, Steven D. Sheridan, Mostafa Ghannad-Rezaie, Peter M. Eimon, Mehmet Fatih Yanik
Software Mentions: 1
Published: over 6 years ago

10.1016/j.xpro.2021.100463

High-throughput generation of midbrain dopaminergic neuron organoids from reporter human pluripotent stem cells
Cited by: 10
Author(s): Lily Sarrafha, Gustavo M. Parfitt, Ricardo Reyes, Camille Goldman, Elena Coccia, Tatyana Kareva, Tim Ahfeldt
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms160921658

A Novel Nanoprobe for Multimodal Imaging Is Effectively Incorporated into Human Melanoma Metastatic Cell Lines
Cited by: 10
Author(s): Synnøve Nymark Aasen, Aneta Pospíšilová, Tilo Wolf Eichler, Jiří Pánek, Martin Hrubý, Petr Štěpánek, Endy Spriet, Daniel Jirák, Kai Ove Skaftnesmo, Frits Thorsen
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms18112491

Nitric Oxide Mediates Crosstalk between Interleukin 1β and WNT Signaling in Primary Human Chondrocytes by Reducing DKK1 and FRZB Expression
Cited by: 27
Author(s): Leilei Zhong, Stefano Schivo, Xiaobin Huang, Jeroen Leijten, Marcel Karperien, Janine N. Post
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms19082233

Restraining Akt1 Phosphorylation Attenuates the Repair of Radiation-Induced DNA Double-Strand Breaks and Reduces the Survival of Irradiated Cancer Cells
Cited by: 11
Author(s): Klaudia Szymonowicz, Sebastian Oeck, A. Krysztofiak, Jansje van der Linden, George Iliakis, Verena Jendrossek
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19082376

The ATR-Activation Domain of TopBP1 Is Required for the Suppression of Origin Firing during the S Phase
Cited by: 13
Author(s): Miiko Sokka, Dennis Koalick, Peter Hemmerich, Juhani E. Syväoja, Helmut Pospiech
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms20051244

Ginsenoside Rh2 Ameliorates Doxorubicin-Induced Senescence Bystander Effect in Breast Carcinoma Cell MDA-MB-231 and Normal Epithelial Cell MCF-10A
Cited by: 26
Author(s): Jingang Hou, Byeong Min Jeon, Yeejin Yun, Chang-Hao Cui, Sun Chang Kim
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20174266

Glomerular Collagen Deposition and Lipocalin-2 Expression Are Early Signs of Renal Injury in Prediabetic Obese Rats
Cited by: 7
Author(s): Éva Nóra Bukosza, Tamás Kaucsár, Mária Godó, Enikő Lajtár, Pál Tod, Gábor Koncsos, Zoltán V. Varga, Tamás Baranyai, Minh Tú Nguyen, Helga Schachner, Csaba Söti, Péter Ferdinándy, Zoltán Giricz, Gábor Szénási, Péter Hamar
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20215337

Insight into Mechanobiology: How Stem Cells Feel Mechanical Forces and Orchestrate Biological Functions
Cited by: 73
Author(s): Chiara Argentati, Francesco Morena, Ilaria Tortorella, Martina Bazzucchi, Serena Porcellati, Carla Emiliani, Sabata Martino
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms20246265

SLC38A10 (SNAT10) is Located in ER and Golgi Compartments and Has a Role in Regulating Nascent Protein Synthesis
Cited by: 12
Author(s): Rekha Tripathi, Kimia Hosseini, Vasiliki Arapi, Robert Fredriksson, Sonchita Bagchi
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms21072588

Healthspan Maintenance and Prevention of Parkinson’s-like Phenotypes with Hydroxytyrosol and Oleuropein Aglycone in C. elegans
Cited by: 101
Author(s): Giovanni Brunetti, Gabriele Di Rosa, Maria Scuto, Manuela Leri, Massimo Stefani, Christian Schmitz‐Linneweber, Vittorio Calabrese, Nadine Saul
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21082949

Crocetin Prevents RPE Cells from Oxidative Stress through Protection of Cellular Metabolic Function and Activation of ERK1/2
Cited by: 15
Author(s): Padideh Karimi, Ali Gheisari, Sylvia J. Gasparini, Hossein Baharvand, Faezeh Shekari, Leila Satarian, Marius Ader
Software Mentions: 1
Published: over 4 years ago

10.1523/ENEURO.0214-17.2017

MANF Is Essential for Neurite Extension and Neuronal Migration in the Developing Cortex
Cited by: 46
Author(s): Kuan-Yin Tseng, Tatiana Danilova, Andrii Domanskyi, Märt Saarma, Maria Lindahl, Mikko Airavaara
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms21114127

Large-Scale Image Analysis for Investigating Spatio-Temporal Changes in Nuclear DNA Damage Caused by Nitrogen Atmospheric Pressure Plasma Jets
Cited by: 6
Author(s): Xu Han, James Kapaldo, Yueying Liu, M. Sharon Stack, Elahe Alizadeh, Sylwia Ptasińska
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21113893

Healthspan Enhancement by Olive Polyphenols in C. elegans Wild Type and Parkinson’s Models
Cited by: 71
Author(s): Gabriele Di Rosa, Giovanni Brunetti, Maria Scuto, Angela Trovato Salinaro, Edward J. Calabrese, Roberto Crea, Christian Schmitz‐Linneweber, Vittorio Calabrese, Nadine Saul
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21145004

Genetically Encoded Fluorescent Sensor for Poly-ADP-Ribose
Cited by: 6
Author(s): Ekaterina O. Serebrovskaya, Nadezda M Podvalnaya, Varvara V. Dudenkova, А. Ефремова, Nadya G. Gurskaya, D.A. Gorbachev, Artem V. Luzhin, Omar L. Kantidze, Elena V. Zagaynova, С. И. Шрам, Konstantin A. Lukyanov
Software Mentions: 1
Published: over 4 years ago

10.1177/2472555220917115

High-Content Phenotypic Profiling in Esophageal Adenocarcinoma Identifies Selectively Active Pharmacological Classes of Drugs for Repurposing and Chemical Starting Points for Novel Drug Discovery
Cited by: 15
Author(s): Rebecca E. Hughes, Richard Elliott, Alison F. Munro, Ashraff Makda, J. Robert O’Neill, Ted R. Hupp, Neil O. Carragher
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21228656

Tissue Printing and Dual Excitation Flow Cytometry for Oxidative Stress—New Tools for Reactive Oxygen Species Research in Seed Biology
Cited by: 5
Author(s): Danuta Cembrowska-Lech
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22031375

Extracellular Vesicles Do Not Mediate the Anti-Inflammatory Actions of Mouse-Derived Adipose Tissue Mesenchymal Stem Cells Secretome
Cited by: 8
Author(s): María Carmen Carceller, Marı́a Isabel Guillén, M. Luisa Gil, Marı́a José Alcaraz
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22041813

Human Islet Microtissues as an In Vitro and an In Vivo Model System for Diabetes
Cited by: 12
Author(s): Joan Mir-Coll, Tilo Moede, Meike Paschen, Aparna Neelakandhan, Ismael Valladolid‐Acebes, Barbara Leibiger, Adelinn Biernath, Carina Ämmälä, Ingo B. Leibiger, Burçak Yesildag, Per Olof Berggren
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22052365

A Role for Human DNA Polymerase λ in Alternative Lengthening of Telomeres
Cited by: 3
Author(s): Elisa Mentegari, Federica Bertoletti, Miroslava Kiššová, Elisa Zucca, S. Galli, Giulia Tagliavini, Anna Garbelli, Antonio Maffia, Silvia Bione, Elena Ferrari, Fabrizio d’Adda di Fagagna, Sofia Francia, Simone Sabbioneda, Liuh‐Yow Chen, Joachim Lingner, Valérie Bergoglio, Jean-Sébastien Hoffmann, Ulrich Hübscher, Emmanuele Crespan, Giovanni Maga
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22094436

Radiation Enhancer Effect of Platinum Nanoparticles in Breast Cancer Cell Lines: In Vitro and In Silico Analyses
Cited by: 20
Author(s): Marie Hullo, Romain Grall, Y. Perrot, Cécile Mathé, Véronique Ménard, Xingsheng Yang, S. Lacombe, Erika Porcel, C. Villagrasa, Sylvie Chevillard, Emmanuelle Bourneuf
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22094537

Small-Molecule Inhibitors of the RNA M6A Demethylases FTO Potently Support the Survival of Dopamine Neurons
Cited by: 18
Author(s): Simona Selberg, Li-Ying Yu, Olesja Bondarenko, Esko Kankuri, Neinar Seli, Vera Kovaleva, Koit Herodes, Märt Saarma, Mati Karelson
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22115588

Bioactive Nanofiber-Based Conduits in a Peripheral Nerve Gap Management—An Animal Model Study
Cited by: 12
Author(s): Tomasz Dębski, Ewa Kijeńska‐Gawrońska, Aleksandra Zołocińska, Katarzyna Siennicka, Anna Słysz, Wiktor Paskal, Paweł Włodarski, Wojciech Święszkowski, Zygmunt Pojda
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22126236

TNFα-Induced LDL Cholesterol Accumulation Involve Elevated LDLR Cell Surface Levels and SR-B1 Downregulation in Human Arterial Endothelial Cells
Cited by: 5
Author(s): Emmanuel U. Okoro
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22126553

In Vitro and In Vivo Efficacies of the Linear and the Cyclic Version of an All-d-Enantiomeric Peptide Developed for the Treatment of Alzheimer’s Disease
Cited by: 5
Author(s): Sarah Schemmert, Luana Cristina Camargo, Dominik Honold, Ian Gering, Janine Kutzsche, Antje Willuweit, Dieter Willbold
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22137098

New Concept and Apparatus for Cytocentrifugation and Cell Processing for Microscopy Analysis
Cited by: 1
Author(s): Anna Ligasová, Karel Koberna
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22168644

Ultrasensitive and Multiplexed Protein Imaging with Cleavable Fluorescent Tyramide and Antibody Stripping
Cited by: 2
Author(s): Thai H. Pham, Christopher D. Nazaroff, Joshua LaBaer, Jia Guo
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22168853

Cell Stress Induces Mislocalization of Transcription Factors with Mitochondrial Enrichment
Cited by: 3
Author(s): Chiara Rossi, Anna Fernàndez, Pascual Torres, Omar Ramírez‐Núñez, Ana Belén Granado-Serrano, Laia Fontdevila, Mònica Povedano, Reinald Pamplona, Isidró Ferrer, Manuel Portero‐Otín
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms22179387

Drebrin Regulates Acetylcholine Receptor Clustering and Organization of Microtubules at the Postsynaptic Machinery
Cited by: 2
Author(s): Paloma Álvarez-Suárez, Natalia Nowak, Anna Protasiuk-Filipunas, Hiroyuki Yamazaki, Tomasz J. Prószyński, Marta Gawor
Software Mentions: 1
Published: about 3 years ago

10.1523/ENEURO.0239-19.2019

Loss of Tiparp Results in Aberrant Layering of the Cerebral Cortex
Cited by: 8
Author(s): Giulia Grimaldi, Barbora Vagaská, Oleksandr Ievglevskyi, Elena Kondratskaya, Joel C. Glover, Jason Matthews
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms221910730

Molecular Mechanism of the Anti-Inflammatory Action of Heparin
Cited by: 17
Author(s): L. Litov, P. Petkov, Miroslav Rangelov, Nevena Ilieva, Elena Lilkova, Nadezhda Todorova, Elena Krachmarova, Kristina Malinova, Anastas Gospodinov, Rumyana Hristova, Iván Ivanov, Genoveva Nacheva
Software Mentions: 1
Published: about 3 years ago

10.1177/2472555219879053

High-Content Imaging for Large-Scale Detection of Low-Affinity Extracellular Protein Interactions
Cited by: 10
Author(s): Laura D. Wood, Gavin J. Wright
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12951-017-0258-5

Optimizing conditions for labeling of mesenchymal stromal cells (MSCs) with gold nanoparticles: a prerequisite for in vivo tracking of MSCs
Cited by: 32
Author(s): Philipp Nold, Raimo Hartmann, Neus Feliu, Karsten Kantner, Mahmoud Gamal, Beatriz Pelaz, Jonas Hühn, Xing Sun, Philipp Jungebluth, Pablo del Pino, Holger Hackstein, Paolo Macchiarini, Wolfgang J. Parak, Cornelia Brendel
Software Mentions: 1
Published: over 7 years ago

10.3390/nu10111788

Direct and Long-Term Metabolic Consequences of Lowly vs. Highly-Digestible Starch in the Early Post-Weaning Diet of Mice
Cited by: 8
Author(s): José M. S. Fernández-Calleja, Lex Bouwman, Hans J. M. Swarts, Annemarie Oosting, Jaap Keijer, Evert M. van Schothorst
Software Mentions: 1
Published: about 6 years ago

10.1186/s11689-020-09332-3

A small-molecule screen reveals novel modulators of MeCP2 and X-chromosome inactivation maintenance
Cited by: 15
Author(s): Hyeong-Min Lee, M. Bram Kuijer, Nerea Ruiz Blanes, Ellen P. Clark, Megumi Aita, Lorena Galiano Arjona, Agnieszka Kokot, Noah Sciaky, Jeremy M. Simon, Sanchita Bhatnagar, Benjamin D. Philpot, Andrea Cerase
Software Mentions: 1
Published: about 4 years ago

10.1186/s12974-019-1647-5

HSV-1 triggers paracrine fibroblast growth factor response from cortical brain cells via immediate-early protein ICP0
Cited by: 13
Author(s): Niko Hensel, Verena Raker, Benjamin Förthmann, Nora Tula Detering, Sabrina Kubinski, Anna Buch, Georgios Katzilieris-Petras, Julia Spanier, Viktoria Gudi, Sylvia Wagenknecht, Verena Kopfnagel, Thomas Werfel, Martin Stangel, Andreas Beineke, Ulrich Kalinke, Søren R. Paludan, Beate Sodeik, Peter Claus
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12974-017-0813-x

Aprepitant limits in vivo neuroinflammatory responses in a rhesus model of Lyme neuroborreliosis
Cited by: 11
Author(s): Alejandra N. Martínez, Amanda R. Burmeister, Geeta Ramesh, Lara A. Doyle-Meyers, Ian Marriott, Mario T. Philipp
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12974-016-0666-8

High-fat diet feeding differentially affects the development of inflammation in the central nervous system
Cited by: 116
Author(s): Owein Guillemot-Legris, Julien Masquelier, Amandine Everard, Patrice D. Cani, Mireille Alhouayek, Giulio G. Muccioli
Software Mentions: 1
Published: about 8 years ago

10.1186/s12974-019-1576-3

A small peptide antagonist of the Fas receptor inhibits neuroinflammation and prevents axon degeneration and retinal ganglion cell death in an inducible mouse model of glaucoma
Cited by: 75
Author(s): Anitha Krishnan, Andrew J. Kocab, David N. Zacks, Ann Marshak‐Rothstein, Meredith Gregory-Ksander
Software Mentions: 1
Published: about 5 years ago

10.1523/JNEUROSCI.0772-16.2017

TARP γ-2 Is Required for Inflammation-Associated AMPA Receptor Plasticity within Lamina II of the Spinal Cord Dorsal Horn
Cited by: 21
Author(s): Steve J. Sullivan, M Farrant, SG Cull-Candy
Software Mentions: 1
Published: over 7 years ago

10.1523/JNEUROSCI.3619-17.2018

mTORC1 Is Transiently Reactivated in Injured Nerves to Promote c-Jun Elevation and Schwann Cell Dedifferentiation
Cited by: 43
Author(s): Camilla Norrmén, Gianluca Figlia, Patrick Pfistner, Jorge A. Pereira, Sven Bachofner, Ueli Suter
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/7604396

Repressed Wnt Signaling Accelerates the Aging Process in Mouse Eyes
Cited by: 4
Author(s): Yujin Zhang, Joseph Jeffrey, Fei Dong, Jianhua Zhang, Winston W.‐Y. Kao, Chia-Yang Liu, Yong Yuan
Software Mentions: 1
Published: over 5 years ago

10.1186/1757-2215-7-12

Sequence variation among members of the miR-200 microRNA family is correlated with variation in the ability to induce hallmarks of mesenchymal-epithelial transition in ovarian cancer cells
Cited by: 21
Author(s): Neda Jabbari, Ashley N Reavis, John F. McDonald
Software Mentions: 1
Published: almost 11 years ago