pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.3390/ijms22126323

Proteome Profiling of PMJ2-R and Primary Peritoneal Macrophages
Cited by: 5
Author(s): А. Л. Русанов, П. М. Кожин, Olga V. Tikhonova, Victor G. Zgoda, Dmitry S. Loginov, Adéla Chlastáková, Martin Selinger, Ján Štěrba, Libor Grubhoffer, Н. Г. Лузгина
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms22189758

Perturbation of TM6SF2 Expression Alters Lipid Metabolism in a Human Liver Cell Line
Cited by: 2
Author(s): Asmita Pant, Yue Chen, Annapurna Kuppa, Xiaomeng Du, Brian D. Halligan, Elizabeth K. Speliotes
Software Mentions: 2
Published: about 4 years ago

10.1016/j.isci.2020.101601

MitoSegNet: Easy-to-use Deep Learning Segmentation for Analyzing Mitochondrial Morphology
Cited by: 31
Author(s): Christian Fischer, Laura Besora-Casals, Stéphane G. Rolland, Simon Haeussler, Kritarth Singh, Michael R. Duchen, Barbara Conradt, Carsten Marr
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2105-11-248

Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
Cited by: 73
Author(s): Pekka Ruusuvuori, Tarmo Äijö, Sharif Chowdhury, Cecilia Garmendia-Torres, Jyrki Selinummi, Mirko Birbaumer, Andrew T. Dudley, Lucas Pelkmans, Olli Yli‐Harja
Software Mentions: 2
Published: over 15 years ago

10.3390/ijms21072323

Detection of Rare Objects by Flow Cytometry: Imaging, Cell Sorting, and Deep Learning Approaches
Cited by: 27
Author(s): Denis V. Voronin, Anastasiia Kozlova, Roman A. Verkhovskii, А. V. Ermakov, Mikhail A. Makarkin, Olga A. Inozemtseva, Daniil N. Bratashov
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21239332

Genomic Instability Is an Early Event in Aluminium-Induced Tumorigenesis
Cited by: 8
Author(s): Stefano J. Mandriota, Mirna Tenan, Adeline Nicolle, Julia Jankowska, Paolo Ferrari, Jean-Christophe Tille, Mary-Anne Durin, Catherine Green, Sébastien P. Tabruyn, Daniela Moralli, André‐Pascal Sappino
Software Mentions: 2
Published: almost 5 years ago

10.7554/eLife.51678

High-dimensional analysis of intestinal immune cells during helminth infection
Cited by: 21
Author(s): Laura Ferrer‐Font, Palak Mehta, Phoebe Harmos, Alfonso Schmidt, Sally Claire Chappell, Kylie M. Price, Ian F. Hermans, Franca Ronchese, Graham Le Gros, Johannes U Mayer
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms140815810

Highly Sensitive Automated Method for DNA Damage Assessment: Gamma-H2AX Foci Counting and Cell Cycle Sorting
Cited by: 34
Author(s): Laia Hernández, Mariona Terradas, Marga Martı́n, Laura Tusell, Anna Genescà
Software Mentions: 2
Published: over 12 years ago

10.1186/s40168-020-00818-9

Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts
Cited by: 26
Author(s): Alba Cortés, John W. Wills, Xiaopei Su, Rachel E. Hewitt, Jack Robertson, Riccardo Scotti, Daniel D. Price, Yvonne Bartley, Tom N. McNeilly, Lutz Krause, Jonathan J. Powell, Alasdair J. Nisbet, Cinzia Cantacessi
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-11-30

Enhanced CellClassifier: a multi-class classification tool for microscopy images
Cited by: 80
Author(s): Benjamin Misselwitz, Gerhard Strittmatter, Balamurugan Periaswamy, Markus C. Schlumberger, Rout Samuel, Péter Horváth, Karol Kozak, Wolf‐Dietrich Hardt
Software Mentions: 2
Published: almost 16 years ago

10.1016/j.ymeth.2020.05.017

An integrated pipeline for high-throughput screening and profiling of spheroids using simple live image analysis of frame to frame variations
Cited by: 12
Author(s): Haneen Alsehli, Fuad Mosis, Christopher Thompson, Eva Hamrud, Erika Wiseman, Eileen Gentleman, Davide Danovi
Software Mentions: 2
Published: over 4 years ago

10.1002/sctm.16-0343

Microfluidic Screening Reveals Heparan Sulfate Enhances Human Mesenchymal Stem Cell Growth by Modulating Fibroblast Growth Factor-2 Transport
Cited by: 24
Author(s): Drew M. Titmarsh, Clarissa Tan, Nick Glass, Victor Nurcombe, Justin J. Cooper-White, Simon M. Cool
Software Mentions: 2
Published: over 8 years ago

10.1186/s12885-020-07533-6

5-aminoimidazole-4-carboxamide ribonucleoside induces differentiation in a subset of primary acute myeloid leukemia blasts
Cited by: 4
Author(s): Vilma Dembitz, Hrvoje Lalić, Ivan Kodvanj, Barbara Tomić, Josip Batinić, Klara Dubravčić, Drago Batinić, Antonio Bedalov, Dora Višnjić
Software Mentions: 2
Published: almost 5 years ago

10.1155/2017/8303959

Platelet Lysate: The Better Choice for Jaw Periosteal Cell Mineralization
Cited by: 4
Author(s): Yvonne Wanner, Felix Umrath, Marc Waidmann, Siegmar Reinert, Dorothea Alexander
Software Mentions: 2
Published: almost 9 years ago

10.7150/thno.42134

Super-resolution observation of lysosomal dynamics with fluorescent gold nanoparticles
Cited by: 38
Author(s): Kangqiang Qiu, Yang Du, Jiyan Liu, Jun‐Lin Guan, Hui Chao, Jiajie Diao
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22073740

RAD51 Inhibition Induces R-Loop Formation in Early G1 Phase of the Cell Cycle
Cited by: 5
Author(s): Zuzana Naščáková, Barbora Boleslavska, Václav Urban, Anna Oravetzova, Edita Vlachova, Pavel Janscak, Jana Dobrovolná
Software Mentions: 2
Published: over 4 years ago

10.1186/s12885-017-3453-8

CpG promoter methylation of the ALKBH3 alkylation repair gene in breast cancer
Cited by: 30
Author(s): Olafur A. Stefansson, Stefan Hermanowicz, Jasper van der Horst, Hólmfríður Hilmarsdóttir, Zuzanna Staszczak, Jón G. Jonasson, Laufey Tryggvadóttír, Thorkell Gudjonsson, Stefan Sigurdsson
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-90569-w

Gene expression alterations in salivary gland epithelia of Sjögren’s syndrome patients are associated with clinical and histopathological manifestations
Cited by: 8
Author(s): Ariana Dela Cruz, Vinay K. Kartha, Andrew Tilston-Lünel, Ruifa Mi, Taylor L. Reynolds, Michaël Mingueneau, Stefano Monti, Janicke Liaaen Jensen, Kathrine Skarstein, Xaralabos Varelas, Maria A. Kukuruzinska
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-92830-8

Serine residues 726 and 780 have nonredundant roles regulating STAT5a activity in luminal breast cancer
Cited by: 6
Author(s): Alicia E. Woock, Jacqueline M Grible, Amy L. Olex, J. Chuck Harrell, Patricija Zot, Michael O. Idowu, Charles V. Clevenger
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-021-87494-3

Lymphedema alters lipolytic, lipogenic, immune and angiogenic properties of adipose tissue: a hypothesis-generating study in breast cancer survivors
Cited by: 12
Author(s): Michal Koc, Martin Wald, Zuzana Varaliová, Barbora Ondrůjová, Terezie Čížková, Milan Brychta, Jana Kračmerová, Lenka Beranová, Jan Pala, Veronika Šrámková, Michaela Šiklová, Jan Gojda, Lenka Rossmeislová
Software Mentions: 2
Published: over 4 years ago

10.18632/aging.202755

Aging and pathological aging signatures of the brain: through the focusing lens of SIRT6
Cited by: 10
Author(s): Daniel Stein, Amir Mizrahi, Anastasia V. Golova, Adam Saretzky, Alfredo Garcia Venzor, Zeev Slobodnik, Shai Kaluski, Monica Einav, Ekaterina E. Khrameeva, Debra Toiber
Software Mentions: 2
Published: over 4 years ago

10.26508/lsa.202101084

Quantitative proteomics identifies PTP1B as modulator of B cell antigen receptor signaling
Cited by: 0
Author(s): Jennifer Schwarz, Lorenz Grundmann, Thomas Kokot, Kathrin Kläsener, Sandra Fotteler, Dávid Medgyesi, Maja Köhn, Michael Reth, Bettina Warscheid
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-88382-6

Aggressive and recurrent ovarian cancers upregulate ephrinA5, a non-canonical effector of EphA2 signaling duality
Cited by: 10
Author(s): Joonas Jukonen, Lidia Moyano‐Galceran, Katrin Höpfner, Elina Pietilä, Laura Lehtinen, Kaisa Huhtinen, Erika Gucciardo, Johanna Hynninen, Sakari Hietanen, Seija Grénman, Päivi M. Ojala, Olli Carpén, Kaisa Lehti
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-78764-7

Leaf proteome modulation and cytological features of seagrass Cymodocea nodosa in response to long-term high CO2 exposure in volcanic vents
Cited by: 2
Author(s): Amalia Piro, Letizia Bernardo, Ilia Anna Serra, Isabel Barrote, Irene Olivé, Monya M. Costa, Luigi Lucini, Rui Santos, Silvia Mazzuca, João Silva
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-80178-4

A role for orphan nuclear receptor liver receptor homolog-1 (LRH-1, NR5A2) in primordial follicle activation
Cited by: 11
Author(s): Marie-Charlotte Meinsohn, Camilla H K Hughes, Anthony Estienne, Hatice D. Saatcioglu, David Pépin, Raj Duggavathi, Bruce D. Murphy
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-68567-1

Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach
Cited by: 12
Author(s): Benedikt von der Heyde, Anastasia Emmanouilidou, Eugenia Mazzaferro, Silvia Vicenzi, Ida Höijer, Tiffany Klingström, Sitaf Jumaa, Olga Dethlefsen, Harold Snieder, Eco J. C. de Geus, Adam Ameur, Erik Ingelsson, Amin Allalou, Hannah L. Brooke, Marcel den Hoed
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-75835-7

A versatile toolbox for semi-automatic cell-by-cell object-based colocalization analysis
Cited by: 19
Author(s): Anders Lunde, Joel C. Glover
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12885-019-5813-z

Master regulator analysis of paragangliomas carrying SDHx, VHL, or MAML3 genetic alterations
Cited by: 6
Author(s): John A. Smestad, Jim Maher
Software Mentions: 2
Published: over 6 years ago

10.1016/j.ymeth.2016.08.018

An open-source solution for advanced imaging flow cytometry data analysis using machine learning
Cited by: 77
Author(s): Holger Hennig, Paul Rees, Thomas Blasi, Lee Kamentsky, Jia‐Jang Hung, David Dao, Anne E. Carpenter, Andrew Filby
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-021-82752-w

Integrins mediate placental extracellular vesicle trafficking to lung and liver in vivo
Cited by: 27
Author(s): Sean L. Nguyen, Soo Hyun Ahn, Jacob W. Greenberg, Benjamin W. Collaer, Dalen Agnew, Ritu Arora, Margaret G. Petroff
Software Mentions: 2
Published: over 4 years ago

10.1016/j.stemcr.2016.11.014

Cytosine-5 RNA Methylation Regulates Neural Stem Cell Differentiation and Motility
Cited by: 118
Author(s): Joana V. Flores, Lucía Cordero-Espinoza, Feride Oeztuerk-Winder, Amanda Andersson-Rolf, Tommaso Selmi, Sandra Blanco, Jignesh Tailor, Sabine Dietmann, Michaela Frye
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-50334-6

The human long non-coding RNA gene RMRP has pleiotropic effects and regulates cell-cycle progression at G2
Cited by: 20
Author(s): Svetlana Vakkilainen, Tiina Skoog, Elisabet Einarsdottir, Anna Middleton, Minna Pekkinen, Tiina Öhman, Shintaro Katayama, Kaarel Krjutškov, Panu E. Kovanen, Markku Varjosalo, Arne Lindqvist, Juha Kere, Outi Mäkitie
Software Mentions: 2
Published: about 6 years ago

10.1186/s40478-020-01011-7

Lipid-specific IgMs induce antiviral responses in the CNS: implications for progressive multifocal leukoencephalopathy in multiple sclerosis
Cited by: 5
Author(s): Lorna Hayden, Tiia Semenoff, Verena Schultz, Simon F. Merz, Katie J. Chapple, Moses Rodriguez, Arthur E. Warrington, Xia Shi, Clive S. McKimmie, Julia M. Edgar, Katja Thümmler, Christopher Linington, Marieke Pingen
Software Mentions: 2
Published: about 5 years ago

10.1186/1741-7007-10-1

Detailed interrogation of trypanosome cell biology via differential organelle staining and automated image analysis
Cited by: 45
Author(s): Richard J. Wheeler, Keith Gull, Eva Gluenz
Software Mentions: 2
Published: almost 14 years ago

10.1002/cam4.3965

Histopathological image and gene expression pattern analysis for predicting molecular features and prognosis of head and neck squamous cell carcinoma
Cited by: 8
Author(s): Linyan Chen, Hao Zeng, Mingxuan Zhang, Yuling Luo, Xuelei Ma
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-48929-0

A high-throughput screen to identify novel synthetic lethal compounds for the treatment of E-cadherin-deficient cells
Cited by: 13
Author(s): Henry Beetham, Augustine Chen, Bryony J. Telford, Andrew Single, Kate E. Jarman, Kurt Lackovic, Andreas Luxenburger, Parry Guilford
Software Mentions: 2
Published: about 6 years ago

10.1186/1741-7007-11-114

The p53 response in single cells is linearly correlated to the number of DNA breaks without a distinct threshold
Cited by: 65
Author(s): Alexander Loewer, Ketki Karanam, Charles Mock, Galit Lahav
Software Mentions: 2
Published: almost 12 years ago

10.1038/micronano.2016.79

Subcellular western blotting of single cells
Cited by: 46
Author(s): Kevin A. Yamauchi, Amy E. Herr
Software Mentions: 2
Published: over 8 years ago

10.1186/s12860-018-0166-z

Novel roles for scleraxis in regulating adult tenocyte function
Cited by: 35
Author(s): Anne E. C. Nichols, Robert E. Settlage, Stephen R. Werre, Linda A. Dahlgren
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-47659-7

Colorectal cancer cells respond differentially to autophagy inhibition in vivo
Cited by: 42
Author(s): Annie Lauzier, Josiann Normandeau-Guimond, Vanessa Vaillancourt-Lavigueur, Vincent Boivin, Martine Charbonneau, Nathalie Rivard, Michelle S. Scott, Claire M. Dubois, Steve Jean
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-57691-7

A Multi-Omics Interpretable Machine Learning Model Reveals Modes of Action of Small Molecules
Cited by: 26
Author(s): Natasha L. Patel-Murray, Miriam Adam, Nhan Huynh, Brook T. Wassie, Pamela Milani, Ernest Fraenkel
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13058-021-01457-0

Sensitivity to targeted therapy differs between HER2-amplified breast cancer cells harboring kinase and helical domain mutations in PIK3CA
Cited by: 5
Author(s): Joseph P. Garay, Rebecca Smith, Kaylyn L. Devlin, Daniel P. Hollern, Tiera Liby, Moqing Liu, Shanta Boddapati, Spencer S. Watson, Amanda Esch, Ting Zheng, Wallace Thompson, Darcie Babcock, Sunjong Kwon, Koei Chin, Laura M. Heiser, Joe W. Gray, James E. Korkola
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-35001-6

Expression profiling and in situ screening of circular RNAs in human tissues
Cited by: 20
Author(s): Ammar Zaghlool, Adam Ameur, Chenglin Wu, Jakub Orzechowski Westholm, Adnan Niazi, Manimozhi Manivannan, Kelli Bramlett, Mats Nilsson, Lars Feuk
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-39854-3

A novel mutation tolerant padlock probe design for multiplexed detection of hypervariable RNA viruses
Cited by: 21
Author(s): Sibel Ciftci, Felix Neumann, Iván Hernandez-Neuta, Mikhayil Hakhverdyan, Ádám Bálint, David Holzmann, Narayanan Madaboosi, Mats Nilsson
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-28482-y

Environmental properties of cells improve machine learning-based phenotype recognition accuracy
Cited by: 12
Author(s): Tímea Tóth, Tamás Balassa, Norbert Bara, Ferenc Kovács, András Kriston, Csaba Molnár, Lajos Haracska, Farkas Sükösd, Péter Horváth
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-25571-w

Propyl-5-hydroxy-3-methyl-1-phenyl-1H-pyrazole-4-carbodithioate (HMPC): a new bacteriostatic agent against methicillin—resistant Staphylococcus aureus
Cited by: 6
Author(s): Tatiana Johnston, Daria Van Tyne, Roy Fangxing Chen, Nicolas L. Fawzi, Bumsup Kwon, Michael J. Kelso, Michael S. Gilmore, Eleftherios Mylonakis
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-31726-6

High-Reynolds Microfluidic Sorting of Large Yeast Populations
Cited by: 7
Author(s): Eliezer Keinan, Ayelet Chen Abraham, Anna Cohen, Alexander I. Alexandrov, Reshef Mintz, Merav Cohen, Dana Reichmann, Daniel Kaganovich, Yaakov Nahmias
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-45284-y

Dynamic adaptation of mesenchymal stem cell physiology upon exposure to surface micropatterns
Cited by: 31
Author(s): Nick R. M. Beijer, Zarina Nauryzgaliyeva, Estela M. Arteaga, Laurent Pieuchot, Karine Anselme, Jeroen van de Peppel, Aliaksei Vasilevich, Nathalie Gröen, Nadia Roumans, Dennie G. A. J. Hebels, Jan de Boer
Software Mentions: 2
Published: over 6 years ago

10.1016/j.molcel.2019.08.005

Polyamines Control eIF5A Hypusination, TFEB Translation, and Autophagy to Reverse B Cell Senescence
Cited by: 189
Author(s): Hanlin Zhang, Ghada Alsaleh, Jack Feltham, Yizhe Sun, Gennaro Napolitano, Thomas Riffelmacher, P. David Charles, Lisa Frau, Philip Hublitz, Zhanru Yu, Shabaz Mohammed, Andrea Ballabio, Stefan Balabanov, Jane Mellor, Anna Katharina Simon
Software Mentions: 2
Published: about 6 years ago

10.1186/s13058-021-01418-7

High IRF8 expression correlates with CD8 T cell infiltration and is a predictive biomarker of therapy response in ER-negative breast cancer
Cited by: 16
Author(s): Gerardo Gatti, Courtney B. Betts, Darío Rocha, Maribel Nicola, Verónica Grupe, Cecilia Ditada, Nicolás Núñez, Emiliano Roselli, Paula Araya, Jeremías Dutto, Lucia Boffelli, Elmer Fernández, Lisa M. Coussens, Mariana Maccioni
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-017-19024-z

Scaffold-free generation of uniform adipose spheroids for metabolism research and drug discovery
Cited by: 85
Author(s): Aloysius J. Klingelhutz, Françoise A. Gourronc, Anna L Chaly, David Wadkins, Anthony J. Burand, Kathleen R. Markan, Sharon O. Idiga, Meng Wu, Matthew J. Potthoff, James A. Ankrum
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-017-18815-8

Automated brightfield morphometry of 3D organoid populations by OrganoSeg
Cited by: 84
Author(s): Michael A. Borten, Sameer S. Bajikar, Nobuo Sasaki, Hans Clevers, Kevin A. Janes
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0138760

Plaque2.0—A High-Throughput Analysis Framework to Score Virus-Cell Transmission and Clonal Cell Expansion
Cited by: 43
Author(s): Artur Yakimovich, Vardan Andriasyan, Robert Witte, I-Hsuan Wang, Ralf Bartenschlager, Maarit Suomalainen, Urs F. Greber
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-017-07599-6

Automated Training of Deep Convolutional Neural Networks for Cell Segmentation
Cited by: 109
Author(s): Sajith Kecheril Sadanandan, Petter Ranefall, Sylvie Le Guyader, Carolina Wählby
Software Mentions: 2
Published: about 8 years ago

10.1038/srep46571

Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells
Cited by: 33
Author(s): Gregor Mönke, Elena Cristiano, Ana Finzel, Dhana Friedrich, Hanspeter Herzel, Martin Falcke, Alexander Loewer
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.23639

Characterization and metabolic synthetic lethal testing in a new model of SDH-loss familial pheochromocytoma and paraganglioma
Cited by: 13
Author(s): John A. Smestad, Oksana Hamidi, Lin Wang, Molly Nelson Holte, Fatimah Al Khazal, Luke Erber, Yue Chen, L. James Maher
Software Mentions: 2
Published: almost 8 years ago

10.18632/oncotarget.25433

BCL2 and BCL(X)L selective inhibitors decrease mitochondrial ATP production in breast cancer cells and are synthetically lethal when combined with 2-deoxy-D-glucose
Cited by: 36
Author(s): Federico Lucantoni, Heiko Düßmann, Irene Llorente‐Folch, Jochen H M Prehn
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-03780-z

Image based Machine Learning for identification of macrophage subsets
Cited by: 103
Author(s): Hassan M. Rostam, Paul M. Reynolds, Morgan R. Alexander, Nikolaj Gadegaard, Amir M. Ghaemmaghami
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-23582-1

Improved efficiency of in situ protein analysis by proximity ligation using UnFold probes
Cited by: 27
Author(s): Axel Klaesson, Karin Grannas, Tonge Ebai, Johan Heldin, Björn Koos, Mattias Leino, Doroteya Raykova, Johan Oelrich, Linda Arngården, Ola Söderberg, Ulf Landegren
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-47521-w

A principled strategy for mapping enhancers to genes
Cited by: 13
Author(s): Dongkyeong Kim, Hongjoo An, Randall S. Shearer, Mohamed Sharif, Chuandong Fan, Jinok Choi, Sun Hwa Ryu, Yungki Park
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-58397-6

Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins
Cited by: 19
Author(s): Matthew J. G. Eldridge, Jorge A. Pereira, Francis Impens, Mélanie Hamon
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pgen.1008967

Paired Box 9 (PAX9), the RNA polymerase II transcription factor, regulates human ribosome biogenesis and craniofacial development
Cited by: 8
Author(s): Katherine I Farley-Barnes, Engin Deniz, Maya M Overton, Mustafa K. Khokha, Susan J. Baserga
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2105-15-S16-S6

FMAj: a tool for high content analysis of muscle dynamics in Drosophila metamorphosis
Cited by: 9
Author(s): Yadav Kuleesha, Wee Choo Puah, Feng Lin, Martin Wasser
Software Mentions: 2
Published: almost 11 years ago

10.1038/sdata.2018.81

A multi-phenotypic imaging screen to identify bacterial effectors by exogenous expression in a HeLa cell line
Cited by: 3
Author(s): Adam Collins, Alan Huett
Software Mentions: 2
Published: over 7 years ago

10.1177/2472555218824280

The Academic Pill: How Academia Contributes to Curing Diseases
Cited by: 3
Author(s): Marc Bickle
Software Mentions: 2
Published: over 6 years ago

10.1038/srep13113

Human cell dedifferentiation in mesenchymal condensates through controlled autophagy
Cited by: 34
Author(s): Rebecca Rose Pennock, Elen Bray, Paul R. Pryor, Sally James, Paul J. McKeegan, Roger G. Sturmey, Paul G. Genever
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pgen.1009736

Genes in human obesity loci are causal obesity genes in C. elegans
Cited by: 14
Author(s): Wenfan Ke, Jordan N. Reed, Clayton S.-C. Yang, Noel Higgason, Leila Rayyan, Carolina Wählby, Anne E. Carpenter, Mete Civelek, Eyleen J. O’Rourke
Software Mentions: 2
Published: about 4 years ago

10.1186/s13068-016-0687-7

A molecular genetic toolbox for Yarrowia lipolytica
Cited by: 52
Author(s): Erin L. Bredeweg, Kyle R. Pomraning, Ziyu Dai, Jens Nielsen, Eduard J. Kerkhoven, Scott E. Baker
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pgen.1006353

A Multistate Toggle Switch Defines Fungal Cell Fates and Is Regulated by Synergistic Genetic Cues
Cited by: 24
Author(s): Matthew Anderson, Allison M. Porman, Na Wang, Eugenio Mancera, Denis Huang, Christina A. Cuomo, Richard J. Bennett
Software Mentions: 2
Published: about 9 years ago

10.3389/fonc.2020.00292

Transcriptomic and Functional Screens Reveal MicroRNAs That Modulate Prostate Cancer Metastasis
Cited by: 6
Author(s): S. Madhusudana Rao, Alison Howarth, Patrick Krätschmer, Ann Snaith, Clarence Yapp, Daniel Ebner, Freddie C. Hamdy, Claire Edwards
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2017.00627

Measuring Leukocyte Adhesion to (Primary) Endothelial Cells after Photon and Charged Particle Exposure with a Dedicated Laminar Flow Chamber
Cited by: 11
Author(s): N. Erbeldinger, Felicitas Rapp, Svetlana Ktitareva, Philipp Wendel, Anna S. Bothe, Till Dettmering, Marco Durante, Thomas Friedrich, Bianca Bertulat, Steven De Meyer, M. C. Cardoso, Stephanie Hehlgans, Franz Rödel, Claudia Fournier
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.578669

Environmental Factors Driving Spatial Heterogeneity in Desert Halophile Microbial Communities
Cited by: 9
Author(s): Gherman Uritskiy, Adam Munn, Micah Dailey, Diego Rivera Gelsinger, Samantha Getsin, Alfonso F. Dávila, Peter McCullough, James Taylor, Jocelyne DiRuggiero
Software Mentions: 2
Published: about 5 years ago

10.3389/fchem.2019.00791

Neuraminidase-3 Is a Negative Regulator of LFA-1 Adhesion
Cited by: 13
Author(s): Md. Amran Howlader, Caishun Li, Chunxia Zou, Radhika Chakraberty, Njuacha Ebesoh, Christopher W. Cairo
Software Mentions: 2
Published: almost 6 years ago

10.3389/fncel.2019.00535

Live-Cell Assays for Cell Stress Responses Reveal New Patterns of Cell Signaling Caused by Mutations in Rhodopsin, α-Synuclein and TDP-43
Cited by: 6
Author(s): Kevin Harlen, Elizabeth C. Roush, Joseph E. Clayton, Scott Martinka, Thom Hughes
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2021.671756

The 5-Phosphatase SHIP2 Promotes Neutrophil Chemotaxis and Recruitment
Cited by: 3
Author(s): Melina Michael, Barrett L. McCormick, Karen E. Anderson, Utsa Karmakar, Matthieu Vermeren, Stéphane Schurmans, Augustin Amour, Sonja Vermeren
Software Mentions: 2
Published: over 4 years ago

10.3389/fnana.2015.00142

Crowdsourcing the creation of image segmentation algorithms for connectomics
Cited by: 273
Author(s): Ignacio Arganda‐Carreras, Srinivas C. Turaga, Daniel R. Berger, Dan Cireşan, Alessandro Giusti, Luca Maria Gambardella, Juergen Schmidhuber, Dmitry Laptev, Sarvesh Dwivedi, Joachim M. Buhmann, Ting Liu, Mojtaba Seyedhosseini, Tolga Taşdizen, Lee Kamentsky, Radim Bürget, Václav Uher, Xiao Tan, Changming Sun, Tuan D. Pham, Erhan Bas, Mustafa Gökhan Uzunbaş, Albert Cardona, Johannes Schindelin, H. Sebastian Seung
Software Mentions: 2
Published: almost 10 years ago

10.3389/fcimb.2017.00475

Predictable, Tunable Protein Production in Salmonella for Studying Host-Pathogen Interactions
Cited by: 14
Author(s): Kendal G. Cooper, Audrey Chong, Tregei Starr, Ciaran E. Finn, Olivia Steele‐Mortimer
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pcbi.1008974

The hierarchical packing of euchromatin domains can be described as multiplicative cascades
Cited by: 3
Author(s): Amra Noa, Hui-Shun Kuan, Vera Aschmann, Vasily Zaburdaev, Lennart Hilbert
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2020.00579

Glucose Availability Alters Gene and Protein Expression of Several Newly Classified and Putative Solute Carriers in Mice Cortex Cell Culture and D. melanogaster
Cited by: 6
Author(s): Mikaela M. Ceder, Emilia Lekholm, Axel Klaesson, Rekha Tripathi, Nadine Schweizer, Lydia Weldai, Sourabh Patil, Robert Fredriksson
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2020.584314

Transcriptome Response and Spatial Pattern of Gene Expression in the Primate Subventricular Zone Neurogenic Niche After Cerebral Ischemia
Cited by: 6
Author(s): Monika C Chongtham, Haifang Wang, Christina Thaller, Nai–Hua Hsiao, Ivan H. Vachkov, Stoyan Pavlov, Lorenz H Williamson, Tetsumori Yamashima, Anastassia Stoykova, Jun Yan, Gregor Eichele, Anton B. Tonchev
Software Mentions: 2
Published: almost 5 years ago

10.3389/fcell.2020.00493

Telomere Length Measurement by Molecular Combing
Cited by: 34
Author(s): Vívian Francília Silva Kahl, Joshua A. M. Allen, Christopher B. Nelson, Alexander P. Sobinoff, Michael Lee, Tatjana Kilo, Raja S. Vasireddy, Hilda A. Pickett
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.657192

Loss of stra8 Increases Germ Cell Apoptosis but Is Still Compatible With Sperm Production in Atlantic Salmon (Salmo salar)
Cited by: 5
Author(s): Kai Ove Skaftnesmo, Diego Crespo, Lene Kleppe, Eva Andersson, Rolf B. Edvardsen, Birgitta Norberg, Per Gunnar Fjelldal, Tom Hansen, Rüdiger Schulz, Anna Wargelius
Software Mentions: 2
Published: over 4 years ago

10.3389/fnins.2021.629067

Recent Trends and Perspectives in Cerebral Organoids Imaging and Analysis
Cited by: 11
Author(s): Clara Brémond Martin, Camille Simon Chane, Cédric Clouchoux, Aymeric Histace
Software Mentions: 2
Published: over 4 years ago

10.12688/f1000research.52569.1

Bioimage analysis workflows: community resources to navigate through a complex ecosystem
Cited by: 8
Author(s): Perrine Paul‐Gilloteaux, Sébastien Tosi, Jean-Karim Hèriché, Alban Gaignard, Hervé Ménager, Raphaël Marée, Volker Baecker, Anna H. Klemm, Matúš Kalaš, Chong Zhang, Kota Miura, Julien Colombelli
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1003670

A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis
Cited by: 25
Author(s): Carlos Castro-González, Miguel Luengo-Oroz, Louise Duloquin, Thierry Savy, B Rizzi, Sophie Desnoulez, René Doursat, Yannick Kergosien, María J. Ledesma-Carbayo, Paul Bourgine, Nadine Peyriéras, A. Santos
Software Mentions: 2
Published: over 11 years ago

10.1002/2211-5463.13036

Spatiotemporal immunolocalisation of REST in the brain of healthy ageing and Alzheimer’s disease rats
Cited by: 3
Author(s): Myrthe Mampay, María Velasco-Estévez, Sara O. Rolle, Aisling M. Chaney, Hervé Boutin, Kumlesh K. Dev, Emad Moeendarbary, Graham K. Sheridan
Software Mentions: 2
Published: almost 5 years ago

10.12688/f1000research.16802.1

An in vitro model for studying CNS white matter: functional properties and experimental approaches
Cited by: 12
Author(s): Silvia Bijland, Gemma Thomson, Matthew Euston, Kyriakos Michail, Katja Thümmler, Steve Mücklisch, Colin L. Crawford, Susan C. Barnett, Marκ McLaughlin, Thomas Anderson, Christopher Linington, Euan R. Brown, Eric R. Kalkman, Julia M. Edgar
Software Mentions: 2
Published: almost 7 years ago

10.1128/AAC.01002-20

The FDA-Approved Drug Nelfinavir Inhibits Lytic Cell-Free but Not Cell-Associated Nonlytic Transmission of Human Adenovirus
Cited by: 16
Author(s): Fanny Georgi, Vardan Andriasyan, Robert Witte, Luca Murer, Silvio Hemmi, Lisa Yu, Melanie Grove, Nicole Meili, Fabien Kuttler, Artur Yakimovich, Gerardo Turcatti, Urs F. Greber
Software Mentions: 2
Published: about 5 years ago

10.12688/f1000research.52531.1

Developing open-source software for bioimage analysis: opportunities and challenges
Cited by: 20
Author(s): Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase
Software Mentions: 2
Published: over 4 years ago

10.3389/fnagi.2021.704041

Poly (ADP-ribose) Interacts With Phosphorylated α-Synuclein in Post Mortem PD Samples
Cited by: 13
Author(s): Laura Puentes, Zsofia Lengyel‐Zhand, Ji Youn Lee, Chia-Ju Hsieh, Mark E. Schneider, Kimberly J. Edwards, Kelvin C. Luk, Virginia M.‐Y. Lee, John Q. Trojanowski, Robert H. Mach
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pcbi.1007688

Phenotype-based probabilistic analysis of heterogeneous responses to cancer drugs and their combination efficacy
Cited by: 10
Author(s): Natacha Comandante-Lou, Mehwish Khaliq, Divya Venkat, Mohan Manikkam, Mohammad Fallahi-Sichani
Software Mentions: 2
Published: over 5 years ago

10.15252/embr.201744837

<scp>SNX</scp> 18 regulates <scp>ATG</scp> 9A trafficking from recycling endosomes by recruiting Dynamin‐2
Cited by: 66
Author(s): Kristiane Søreng, Michael J. Munson, Christopher R. Lamb, Gunnveig Toft Bjørndal, Serhiy Pankiv, Sven R. Carlsson, Sharon A. Tooze, Anne Simonsen
Software Mentions: 2
Published: over 7 years ago

10.1042/ETLS20160025

Computational biology: deep learning
Cited by: 60
Author(s): William Jones, Kaur Alasoo, Dmytro Fishman, Leopold Parts
Software Mentions: 2
Published: almost 8 years ago

10.15252/emmm.201910852

A thiol‐bound drug reservoir enhances APR‐246‐induced mutant p53 tumor cell death
Cited by: 20
Author(s): Sophia Ceder, Sofi Eriksson, Emarndeena H Cheteh, Swati Dawar, Mariana Corrales Benitez, Vladimir J. N. Bykov, Kenji M. Fujihara, Mélodie Grandin, Xiaodun Li, Susanne Ramm, Corina Behrenbruch, Kaylene J. Simpson, Frédéric Hollande, Lars Abrahmsén, Nicholas J. Clemons, Klas G. Wiman
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pbio.2003998

Stable centrosomal roots disentangle to allow interphase centriole independence
Cited by: 13
Author(s): Robert Mahen
Software Mentions: 2
Published: over 7 years ago

10.15252/embr.201947845

Myc‐dependent endothelial proliferation is controlled by phosphotyrosine 1212 in <scp>VEGF</scp> receptor‐2
Cited by: 23
Author(s): Chiara Testini, Ross O Smith, Yi Jin, Pernilla Martinsson, Ying Sun, Mattias Hedlund, Miguel Sáinz‐Jaspeado, Masabumi Shibuya, Mats Hellström, Lena Claesson‐Welsh
Software Mentions: 2
Published: about 6 years ago

10.1186/s13072-017-0157-x

H2A O-GlcNAcylation at serine 40 functions genomic protection in association with acetylated H2AZ or γH2AX
Cited by: 12
Author(s): Koji Hayakawa, Mitsuko Hirosawa, Ruiko Tani, Chikako Yoneda, Satoshi Tanaka, Kunio Shiota
Software Mentions: 2
Published: about 8 years ago

10.15252/embj.201798714

Evidence for the nuclear import of histones H3.1 and H4 as monomers
Cited by: 39
Author(s): Michael James Apta‐Smith, Juan R. Hernández-Fernaud, Andrew Bowman
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pbio.2005970

CellProfiler 3.0: Next-generation image processing for biology
Cited by: 1,445
Author(s): Claire McQuin, Allen Goodman, Vasiliy S. Chernyshev, Lee Kamentsky, Beth A. Cimini, Kyle W. Karhohs, Minh Doan, Liya Ding, Susanne M. Rafelski, Derek Thirstrup, Winfried Wiegraebe, Shantanu Singh, Tim Becker, Juan C. Caicedo, Anne E. Carpenter
Software Mentions: 2
Published: over 7 years ago

10.15252/embj.2019103889

Proteasomal degradation induced by DPP9‐mediated processing competes with mitochondrial protein import
Cited by: 21
Author(s): Yannik Finger, Markus Habich, Sarah Gerlich, Sophia Urbanczyk, Erik van de Logt, Julian Koch, Laura Schu, Kim Jasmin Lapacz, Muna Ali, Carmelina Petrungaro, Silja Lucia Salscheider, C. Pichlo, Ulrich Baumann, Dirk Mielenz, Jörn Dengjel, Bent Brachvogel, Kay Hofmann, Jan Riemer
Software Mentions: 2
Published: about 5 years ago

Projects: pypi: CellProfiler

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Papers Mentioning CellProfiler 1,504