pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0163453

Image-Based Single Cell Profiling: High-Throughput Processing of Mother Machine Experiments
Cited by: 31
Author(s): Christian Carsten Sachs, Alexander Grünberger, Stefan Helfrich, Christopher Probst, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh
Software Mentions: 3
Published: almost 10 years ago

10.7554/eLife.07759

Progerin reduces LAP2α-telomere association in Hutchinson-Gilford progeria
Cited by: 89
Author(s): Alexandre Chojnowski, P.P. Ong, Esther Wong, John Lim, Rafidah Mutalif, Raju Navasankari, Bamaprasad Dutta, Henry Yang, Yi Y. Liow, Siu Kwan Sze, Thomas Boudier, Alan Colman, Brian Burke, Colin L. Stewart, Oliver Dreesen
Software Mentions: 3
Published: almost 11 years ago

10.7717/peerj-cs.584

Machine learning analysis of TCGA cancer data
Cited by: 9
Author(s): José Liñares-Blanco, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 3
Published: about 5 years ago

10.3390/ph14030195

Inhibition of Intercellular Cytosolic Traffic via Gap Junctions Reinforces Lomustine-Induced Toxicity in Glioblastoma Independent of MGMT Promoter Methylation Status
Cited by: 7
Author(s): Matthias Schneider, Anna-Laura Potthoff, Bernd O. Evert, Marius Dicks, Denise Ehrentraut, Andreas Dolf, Elena N. C. Schmidt, Niklas Schäfer, Valeri Borger, Torsten Pietsch, Mike‐Andrew Westhoff, Erdem Güresir, Andreas Waha, Hartmut Vatter, Dieter Henrik Heiland, Patrick Schuss, Ulrich Herrlinger
Software Mentions: 3
Published: over 5 years ago

10.1007/s00497-020-00398-6

Quantitative methods in microscopy to assess pollen viability in different plant taxa
Cited by: 9
Author(s): Lorenzo Ascari, Cristina Novara, Virginia Dusio, Ludovica Oddi, Consolata Siniscalco
Software Mentions: 3
Published: almost 6 years ago

10.1128/mBio.01569-16

The Antiviral Mechanism of an Influenza A Virus Nucleoprotein-Specific Single-Domain Antibody Fragment
Cited by: 24
Author(s): Leo Hanke, Kevin E. Knockenhauer, R. Camille Brewer, Eline van Diest, Florian I. Schmidt, Thomas Schwartz, Hidde L. Ploegh
Software Mentions: 3
Published: over 9 years ago

10.15252/emmm.202012574

Cooperation of LIM domain‐binding 2 (LDB2) with EGR in the pathogenesis of schizophrenia
Cited by: 2
Author(s): Tetsuo Ohnishi, Yuji Kiyama, Fumiko Arima-Yoshida, Mitsutaka Kadota, Tomoe Ichikawa, Kazuyuki Yamada, Akïharu Watanabe, Hideki Ohba, Kaori Tanaka, Akihiro Nakaya, Yasue Horiuchi, Yoshimi Iwayama, Manabu Toyoshima, Itone Ogawa, Chie Shimamoto-Mitsuyama, Motoko Maekawa, Shabeesh Balan, Makoto Arai, Mitsuhiro Miyashita, Kazuya Toriumi, Yayoi Nozaki, Rumi Kurokawa, Kazuhiro Suzuki, Akane Yoshikawa, Tomoko Toyota, Toshihiko Hosoya, Hiroyuki Okuno, Haruhiko Bito, Masanari Itokawa, Shigehiro Kuraku, Toshiya Manabe, Takeo Yoshikawa
Software Mentions: 3
Published: over 5 years ago

10.1038/s41597-019-0331-z

Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media
Cited by: 7
Author(s): Abhishek Rajput, Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M. Monk, Pieter C. Dorrestein, Rob Knight, Victor Nizet, Bernhard Ø. Palsson, Adam M. Feist, Joe Pogliano
Software Mentions: 3
Published: over 6 years ago

10.1186/1751-0473-8-16

CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation
Cited by: 76
Author(s): Erlend Hodneland, Tanja Kögel, Dominik Frei, Hans‐Hermann Gerdes, Arvid Lundervold
Software Mentions: 3
Published: about 13 years ago

10.3389/fonc.2021.620989

Characterization of the Tumor Immune Microenvironment in Lung Squamous Cell Carcinoma Using Imaging Mass Cytometry
Cited by: 17
Author(s): Ran Li, Ying Lin, Yu Wang, Shaoyuan Wang, Yang Yang, Xinlin Mu, Yu‐Sheng Chen, Zhancheng Gao
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2021.636057

A Multi-Omics Analysis of Metastatic Melanoma Identifies a Germinal Center-Like Tumor Microenvironment in HLA-DR-Positive Tumor Areas
Cited by: 6
Author(s): Laura Gadeyne, Yannick Van Herck, Giorgia Milli, Zeynep Kalender Atak, Maddalena M. Bolognesi, Jasper Wouters, Lukas Marcelis, Angeliki Minia, Vaia Pliaka, Jan Roznac, Leonidas G. Alexopoulos, Giorgio Cattoretti, Oliver Bechter, Joost van den Oord, Frederik De Smet, Asier Antoranz, Francesca Maria Bosisio
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms22179595

Regulation of the Golgi Apparatus by p38 and JNK Kinases during Cellular Stress Responses
Cited by: 6
Author(s): Cathrine Nordgaard, Maxim A. X. Tollenaere, Ana Martinez Del Val, Dorte B. Bekker-Jensen, Melanie Blasius, Jesper V. Olsen, Simon Bekker‐Jensen
Software Mentions: 3
Published: almost 5 years ago

10.21307/jofnem-2020-108

Competitive fitness analysis using Convolutional Neural Network
Cited by: 1
Author(s): Joanna Palka, Krzysztof Fiok, Weronika Antoł, Zofia M. Prokop
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-19871-4

Dysregulated fibronectin trafficking by Hsp90 inhibition restricts prostate cancer cell invasion
Cited by: 29
Author(s): Heather Armstrong, Joanna L. Gillis, I. R. Johnson, Zeyad D. Nassar, Max Moldovan, Claire Levrier, Martin C. Sadowski, Mei Yieng Chin, Emma S. Tomlinson Guns, Gerard A. Tarulli, David J. Lynn, Doug A. Brooks, Luke A. Selth, Margaret M. Centenera, Lisa M. Butler
Software Mentions: 3
Published: over 8 years ago

10.1177/2472555218820805

Evaluation of Machine Learning Classifiers to Predict Compound Mechanism of Action When Transferred across Distinct Cell Lines
Cited by: 12
Author(s): Scott J. Warchal, John C. Dawson, Neil O. Carragher
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.36330

TFAP2 transcription factors are regulators of lipid droplet biogenesis
Cited by: 31
Author(s): Cameron C. Scott, Stefania Vossio, Jacques Rougemont, Jean Grüenberg
Software Mentions: 3
Published: almost 8 years ago

10.7554/eLife.23468

A lncRNA fine tunes the dynamics of a cell state transition involving Lin28, let-7 and de novo DNA methylation
Cited by: 29
Author(s): Meng Amy Li, Paulo Amaral, Priscilla Cheung, Jan H. Bergmann, Masaki Kinoshita, Tüzer Kalkan, Markus Ralser, Sam Robson, Ferdinand von Meyenn, Maike Paramor, Fengtang Yang, Caifu Chen, Jennifer Nichols, David L. Spector, Tony Kouzarides, Lin He, Austin Smith
Software Mentions: 3
Published: about 9 years ago

10.1177/2472555218818053

Unbiased Phenotype Detection Using Negative Controls
Cited by: 2
Author(s): Antje Janosch, Carolin Kaffka, Marc Bickle
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.12298

Case-specific potentiation of glioblastoma drugs by pterostilbene
Cited by: 16
Author(s): Linnéa Schmidt, Sathishkumar Baskaran, Patrik Johansson, Narendra Padhan, Damian J. Matuszewski, Lydia C. Green, Ludmila Elfineh, Shimei Wee, Maria Häggblad, Ulf Märtens, Bengt Westermark, Karin Forsberg-Nilsson, Lene Uhrbom, Lena Claesson‐Welsh, Michael Andäng, Ida‐Maria Sintorn, Bo Lundgren, Ingrid Lönnstedt, Cecilia Krona, Sven Nelander
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-018-37522-6

MITF has a central role in regulating starvation-induced autophagy in melanoma
Cited by: 60
Author(s): Katrín Möller, Sara Sigurbjörnsdóttir, Asgeir Ö. Arnthórsson, Vivian Pogenberg, Ramile Dilshat, Valerie Fock, Sólveig Hlín Brynjólfsdóttir, Christian Bindesbøll, M. Bessadóttir, Helga M. Ögmundsdóttir, Anne Simonsen, Lionel Larue, Matthias Wilmanns, Vésteinn Thórsson, Eiríkur Steingrimsson, Margrét H. Ögmundsdóttir
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2020.00548

Genomic and Phenotypic Analyses of Acinetobacter baumannii Isolates From Three Tertiary Care Hospitals in Thailand
Cited by: 24
Author(s): Jessica Loraine, Eva Heinz, Rosesathorn Soontarach, Grace A. Blackwell, Richard A. Stabler, Supayang Piyawan Voravuthikunchai, Potjanee Srimanote, Pattarachai Kiratisin, Nicholas R. Thomson, Peter W. Taylor
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2019.01144

Quantitative Spatial Analysis of Metabolic Heterogeneity Across in vivo and in vitro Tumor Models
Cited by: 18
Author(s): Tiffany M. Heaster, Bennett A. Landman, Melissa C. Skala
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-84887-2

Slc1a3-2A-CreERT2 mice reveal unique features of Bergmann glia and augment a growing collection of Cre drivers and effectors in the 129S4 genetic background
Cited by: 9
Author(s): Lech Kaczmarczyk, Nicole Reichenbach, Nelli Blank, Maria Jonson, Lars Dittrich, Gabor C. Petzold, Walker S. Jackson
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-86087-4

Microdroplet-based one-step RT-PCR for ultrahigh throughput single-cell multiplex gene expression analysis and rare cell detection
Cited by: 13
Author(s): Jennifer Ma, Gary Tran, Alwin M. D. Wan, Elton T. Young, Eugenia Kumacheva, Norman N. Iscove, Peter W. Zandstra
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-50010-9

Cell Type Classification and Unsupervised Morphological Phenotyping From Low-Resolution Images Using Deep Learning
Cited by: 30
Author(s): Kai Yao, Nash D. Rochman, Sean X. Sun
Software Mentions: 3
Published: almost 7 years ago

10.1016/j.stemcr.2021.01.013

Unraveling the Developmental Roadmap toward Human Brown Adipose Tissue
Cited by: 9
Author(s): Stefania Carobbio, Anne Claire Guenantin, Myriam Bahri, Sonia Rodríguez-Fdez, Floris Honig, Ioannis Kamzolas, Isabella Samuelson, Kathleen Long, Sherine Awad, Dunja Lukovic, Slaven Erceg, Andrew Bassett, Sasha Mendjan, Ludovic Vallier, Barry Rosen, Davide Chiarugi, António Vidal-Puig
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-59988-z

A salivary metabolite signature that reflects gingival host-microbe interactions: instability predicts gingivitis susceptibility
Cited by: 0
Author(s): Marcela M. Fernandez-Gutierrez, Sultan Imangaliyev, Andrei Prodan, Bruno G. Loos, Bart J. F. Keijser, Michiel Kleerebezem
Software Mentions: 3
Published: over 6 years ago

10.15252/embr.201745642

Negative feedback via <scp>RSK</scp> modulates Erk‐dependent progression from naïve pluripotency
Cited by: 25
Author(s): Isabelle Nett, Carla Mulas, Laurent Guy, Kathryn S. Lilley, Austin Smith
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-018-35383-7

Vasoinhibin comprises a three-helix bundle and its antiangiogenic domain is located within the first 79 residues
Cited by: 13
Author(s): Juan Pablo Robles, Magdalena Zamora, José Luis Velasco-Bolom, Miriam Tovar, Ramón Garduño‐Juárez, Thomas Bertsch, Gonzalo Martı́nez de la Escalera, Jakob Triebel, Carmen Clapp
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms21103672

Sonic Hedgehog and Triiodothyronine Pathway Interact in Mouse Embryonic Neural Stem Cells
Cited by: 1
Author(s): Pavel Ostašov, Jan Tůma, Pavel Pitule, Jiřı́ Moravec, Zbyněk Houdek, F Vožeh, Milena Králíčková, Jan Cendelín, Václav Babuška
Software Mentions: 3
Published: about 6 years ago

10.3389/fimmu.2019.00094

Sialyllactose and Galactooligosaccharides Promote Epithelial Barrier Functioning and Distinctly Modulate Microbiota Composition and Short Chain Fatty Acid Production In Vitro
Cited by: 70
Author(s): Olaf Perdijk, Peter van Baarlen, Marcela M. Fernandez-Gutierrez, Frank Schuren, Sylvia Brugman, H.F.J. Savelkoul, Michiel Kleerebezem, R. J. Joost van Neerven
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-12747-z

Role of autophagy in cell-penetrating peptide transfection model
Cited by: 23
Author(s): Moataz Dowaidar, Maxime Gestin, Carmine Pasquale Cerrato, Mohammed Hakim Jafferali, Helerin Margus, Paula Ann Kivistik, Kariem Ezzat, Einar Hallberg, Margus Pooga, Mattias Hällbrink, Ülo Langel
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-021-91846-4

High-resolution transcriptional landscape of xeno-free human induced pluripotent stem cell-derived cerebellar organoids
Cited by: 28
Author(s): Samuel Nayler, Devika Agarwal, Fabiola Curion, Rory Bowden, Esther B. E. Becker
Software Mentions: 3
Published: about 5 years ago

10.1186/s13014-015-0453-1

The Focinator - a new open-source tool for high-throughput foci evaluation of DNA damage
Cited by: 44
Author(s): Sebastian Oeck, Nathalie M. Malewicz, Sebastian Hurst, Justine Rudner, Verena Jendrossek
Software Mentions: 3
Published: about 11 years ago

10.1523/ENEURO.0202-20.2020

Sex-Specific Role for Dopamine Receptor D2 in Dorsal Raphe Serotonergic Neuron Modulation of Defensive Acoustic Startle and Dominance Behavior
Cited by: 6
Author(s): Krissy A Lyon, Benjamin D. Rood, Lorna Wu, Rebecca A. Senft, Lisa V. Goodrich, Susan M. Dymecki
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-53428-3

Immune cell type, cell activation, and single cell heterogeneity revealed by label-free optical methods
Cited by: 10
Author(s): Nicolas Pavillon, Nicholas I. Smith
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-31924-2

3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification
Cited by: 21
Author(s): Alexandr A. Kalinin, Ari Allyn-Feuer, Alex Ade, Gordon-Victor Fon, Walter Meixner, David S. Dilworth, Syed Sameed Husain, Jeffrey R. de Wet, Gerald A. Higgins, Gen Zheng, Amy L. Creekmore, John W. Wiley, James E. Verdone, Robert W. Veltri, Kenneth J. Pienta, Donald S. Coffey, Brian D. Athey, Ivo D. Dinov
Software Mentions: 3
Published: almost 8 years ago

10.3390/ijms22031167

Glutamine Uptake via SNAT6 and Caveolin Regulates Glutamine–Glutamate Cycle
Cited by: 14
Author(s): Nikhil R. Gandasi, Vasiliki Arapi, Michel‐Edwar Mickael, Prajakta A. Belekar, Louise Granlund, Lakshmi Kothegala, Robert Fredriksson, Sonchita Bagchi
Software Mentions: 3
Published: over 5 years ago

10.3390/nu12030624

Alliin, An Allium sativum Nutraceutical, Reduces Metaflammation Markers in DIO Mice
Cited by: 17
Author(s): Marina A. Sánchez-Sánchez, Adelaida Sara Minia Zepeda-Morales, Lucrecia Carrera-Quintanar, Juan Manuel Viveros–Paredes, Noel N Franco-Arroyo, Marisol Godínez-Rubí, Daniel Ortuño-Sahagún, Rocío Ivette López-Roa
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-28482-y

Environmental properties of cells improve machine learning-based phenotype recognition accuracy
Cited by: 12
Author(s): Tímea Tóth, Tamás Balassa, Norbert Bara, Ferenc Kovács, András Kriston, Csaba Molnár, Lajos Haracska, Farkas Sükösd, Péter Horváth
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-021-90569-w

Gene expression alterations in salivary gland epithelia of Sjögren’s syndrome patients are associated with clinical and histopathological manifestations
Cited by: 8
Author(s): Ariana Dela Cruz, Vinay K. Kartha, Andrew Tilston-Lünel, Ruifa Mi, Taylor L. Reynolds, Michaël Mingueneau, Stefano Monti, Janicke Liaaen Jensen, Kathrine Skarstein, Xaralabos Varelas, Maria A. Kukuruzinska
Software Mentions: 2
Published: about 5 years ago

10.3389/fnana.2015.00142

Crowdsourcing the creation of image segmentation algorithms for connectomics
Cited by: 273
Author(s): Ignacio Arganda‐Carreras, Srinivas C. Turaga, Daniel R. Berger, Dan Cireşan, Alessandro Giusti, Luca Maria Gambardella, Juergen Schmidhuber, Dmitry Laptev, Sarvesh Dwivedi, Joachim M. Buhmann, Ting Liu, Mojtaba Seyedhosseini, Tolga Taşdizen, Lee Kamentsky, Radim Bürget, Václav Uher, Xiao Tan, Changming Sun, Tuan D. Pham, Erhan Bas, Mustafa Gökhan Uzunbaş, Albert Cardona, Johannes Schindelin, H. Sebastian Seung
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-021-92830-8

Serine residues 726 and 780 have nonredundant roles regulating STAT5a activity in luminal breast cancer
Cited by: 6
Author(s): Alicia E. Woock, Jacqueline M Grible, Amy L. Olex, J. Chuck Harrell, Patricija Zot, Michael O. Idowu, Charles V. Clevenger
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2020.00493

Telomere Length Measurement by Molecular Combing
Cited by: 34
Author(s): Vívian Francília Silva Kahl, Joshua A. M. Allen, Christopher B. Nelson, Alexander P. Sobinoff, Michael Lee, Tatjana Kilo, Raja S. Vasireddy, Hilda A. Pickett
Software Mentions: 2
Published: about 6 years ago

10.3389/fnins.2021.629067

Recent Trends and Perspectives in Cerebral Organoids Imaging and Analysis
Cited by: 11
Author(s): Clara Brémond Martin, Camille Simon Chane, Cédric Clouchoux, Aymeric Histace
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-018-31726-6

High-Reynolds Microfluidic Sorting of Large Yeast Populations
Cited by: 7
Author(s): Eliezer Keinan, Ayelet Chen Abraham, Anna Cohen, Alexander I. Alexandrov, Reshef Mintz, Merav Cohen, Dana Reichmann, Daniel Kaganovich, Yaakov Nahmias
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-32364-8

Cell-based RNAi screening and high-content analysis in primary calvarian osteoblasts applied to identification of osteoblast differentiation regulators
Cited by: 7
Author(s): Mubashir Ahmad, Torsten Kroll, Jeanette Jakob, Alexander Rauch, Aspasia Ploubidou, Jan Tuckermann
Software Mentions: 2
Published: almost 8 years ago

10.3390/nu11102439

High Dose of Dietary Nicotinamide Riboside Induces Glucose Intolerance and White Adipose Tissue Dysfunction in Mice Fed a Mildly Obesogenic Diet
Cited by: 25
Author(s): Wenbiao Shi, Maria A. Hegeman, Atanaska Doncheva, Melissa Bekkenkamp‐Grovenstein, Vincent C.J. de Boer, Jaap Keijer
Software Mentions: 2
Published: almost 7 years ago

10.3389/fchem.2019.00791

Neuraminidase-3 Is a Negative Regulator of LFA-1 Adhesion
Cited by: 13
Author(s): Md. Amran Howlader, Caishun Li, Chunxia Zou, Radhika Chakraberty, Njuacha Ebesoh, Christopher W. Cairo
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-35001-6

Expression profiling and in situ screening of circular RNAs in human tissues
Cited by: 20
Author(s): Ammar Zaghlool, Adam Ameur, Chenglin Wu, Jakub Orzechowski Westholm, Adnan Niazi, Manimozhi Manivannan, Kelli Bramlett, Mats Nilsson, Lars Feuk
Software Mentions: 2
Published: almost 8 years ago

10.3389/fcell.2020.00579

Glucose Availability Alters Gene and Protein Expression of Several Newly Classified and Putative Solute Carriers in Mice Cortex Cell Culture and D. melanogaster
Cited by: 6
Author(s): Mikaela M. Ceder, Emilia Lekholm, Axel Klaesson, Rekha Tripathi, Nadine Schweizer, Lydia Weldai, Sourabh Patil, Robert Fredriksson
Software Mentions: 2
Published: about 6 years ago

10.1038/srep29752

A high-content image-based method for quantitatively studying context-dependent cell population dynamics
Cited by: 48
Author(s): Colleen M. Garvey, Erin Spiller, Danika Lindsay, Chun-Te Chiang, Nathan C. Choi, David B. Agus, Parag Mallick, Jasmine Foo, Shannon M. Mumenthaler
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-019-39854-3

A novel mutation tolerant padlock probe design for multiplexed detection of hypervariable RNA viruses
Cited by: 21
Author(s): Sibel Ciftci, Felix Neumann, Iván Hernandez-Neuta, Mikhayil Hakhverdyan, Ádám Bálint, David Holzmann, Narayanan Madaboosi, Mats Nilsson
Software Mentions: 2
Published: over 7 years ago

10.3389/fonc.2020.00292

Transcriptomic and Functional Screens Reveal MicroRNAs That Modulate Prostate Cancer Metastasis
Cited by: 6
Author(s): S. Madhusudana Rao, Alison Howarth, Patrick Krätschmer, Ann Snaith, Clarence Yapp, Daniel Ebner, Freddie C. Hamdy, Claire Edwards
Software Mentions: 2
Published: over 6 years ago

10.1016/j.stemcr.2016.11.014

Cytosine-5 RNA Methylation Regulates Neural Stem Cell Differentiation and Motility
Cited by: 118
Author(s): Joana V. Flores, Lucía Cordero-Espinoza, Feride Oeztuerk-Winder, Amanda Andersson-Rolf, Tommaso Selmi, Sandra Blanco, Jignesh Tailor, Sabine Dietmann, Michaela Frye
Software Mentions: 2
Published: over 9 years ago

10.1002/2211-5463.13036

Spatiotemporal immunolocalisation of REST in the brain of healthy ageing and Alzheimer’s disease rats
Cited by: 3
Author(s): Myrthe Mampay, María Velasco-Estévez, Sara O. Rolle, Aisling M. Chaney, Hervé Boutin, Kumlesh K. Dev, Emad Moeendarbary, Graham K. Sheridan
Software Mentions: 2
Published: over 5 years ago

10.1038/srep34785

Single cell dynamic phenotyping
Cited by: 16
Author(s): Katherin Patsch, Charles B. Chiu, Mark Engeln, David B. Agus, Parag Mallick, Shannon M. Mumenthaler, Daniel Ruderman
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13072-017-0157-x

H2A O-GlcNAcylation at serine 40 functions genomic protection in association with acetylated H2AZ or γH2AX
Cited by: 12
Author(s): Koji Hayakawa, Mitsuko Hirosawa, Ruiko Tani, Chikako Yoneda, Satoshi Tanaka, Kunio Shiota
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-45284-y

Dynamic adaptation of mesenchymal stem cell physiology upon exposure to surface micropatterns
Cited by: 31
Author(s): Nick R. M. Beijer, Zarina Nauryzgaliyeva, Estela M. Arteaga, Laurent Pieuchot, Karine Anselme, Jeroen van de Peppel, Aliaksei Vasilevich, Nathalie Gröen, Nadia Roumans, Dennie G. A. J. Hebels, Jan de Boer
Software Mentions: 2
Published: about 7 years ago

10.12688/f1000research.16802.1

An in vitro model for studying CNS white matter: functional properties and experimental approaches
Cited by: 12
Author(s): Silvia Bijland, Gemma Thomson, Matthew Euston, Kyriakos Michail, Katja Thümmler, Steve Mücklisch, Colin L. Crawford, Susan C. Barnett, Marκ McLaughlin, Thomas Anderson, Christopher Linington, Euan R. Brown, Eric R. Kalkman, Julia M. Edgar
Software Mentions: 2
Published: over 7 years ago

10.3389/fnagi.2021.704041

Poly (ADP-ribose) Interacts With Phosphorylated α-Synuclein in Post Mortem PD Samples
Cited by: 13
Author(s): Laura Puentes, Zsofia Lengyel‐Zhand, Ji Youn Lee, Chia-Ju Hsieh, Mark E. Schneider, Kimberly J. Edwards, Kelvin C. Luk, Virginia M.‐Y. Lee, John Q. Trojanowski, Robert H. Mach
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2021.671756

The 5-Phosphatase SHIP2 Promotes Neutrophil Chemotaxis and Recruitment
Cited by: 3
Author(s): Melina Michael, Barrett L. McCormick, Karen E. Anderson, Utsa Karmakar, Matthieu Vermeren, Stéphane Schurmans, Augustin Amour, Sonja Vermeren
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-47521-w

A principled strategy for mapping enhancers to genes
Cited by: 13
Author(s): Dongkyeong Kim, Hongjoo An, Randall S. Shearer, Mohamed Sharif, Chuandong Fan, Jinok Choi, Sun Hwa Ryu, Yungki Park
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-47659-7

Colorectal cancer cells respond differentially to autophagy inhibition in vivo
Cited by: 42
Author(s): Annie Lauzier, Josiann Normandeau-Guimond, Vanessa Vaillancourt-Lavigueur, Vincent Boivin, Martine Charbonneau, Nathalie Rivard, Michelle S. Scott, Claire M. Dubois, Steve Jean
Software Mentions: 2
Published: about 7 years ago

10.3389/fcell.2021.657192

Loss of stra8 Increases Germ Cell Apoptosis but Is Still Compatible With Sperm Production in Atlantic Salmon (Salmo salar)
Cited by: 5
Author(s): Kai Ove Skaftnesmo, Diego Crespo, Lene Kleppe, Eva Andersson, Rolf B. Edvardsen, Birgitta Norberg, Per Gunnar Fjelldal, Tom Hansen, Rüdiger Schulz, Anna Wargelius
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-48929-0

A high-throughput screen to identify novel synthetic lethal compounds for the treatment of E-cadherin-deficient cells
Cited by: 13
Author(s): Henry Beetham, Augustine Chen, Bryony J. Telford, Andrew Single, Kate E. Jarman, Kurt Lackovic, Andreas Luxenburger, Parry Guilford
Software Mentions: 2
Published: almost 7 years ago

10.1155/2017/8303959

Platelet Lysate: The Better Choice for Jaw Periosteal Cell Mineralization
Cited by: 4
Author(s): Yvonne Wanner, Felix Umrath, Marc Waidmann, Siegmar Reinert, Dorothea Alexander
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-019-50334-6

The human long non-coding RNA gene RMRP has pleiotropic effects and regulates cell-cycle progression at G2
Cited by: 20
Author(s): Svetlana Vakkilainen, Tiina Skoog, Elisabet Einarsdottir, Anna Middleton, Minna Pekkinen, Tiina Öhman, Shintaro Katayama, Kaarel Krjutškov, Panu E. Kovanen, Markku Varjosalo, Arne Lindqvist, Juha Kere, Outi Mäkitie
Software Mentions: 2
Published: almost 7 years ago

10.12688/f1000research.52531.1

Developing open-source software for bioimage analysis: opportunities and challenges
Cited by: 20
Author(s): Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase
Software Mentions: 2
Published: over 5 years ago

10.1038/srep46571

Excitability in the p53 network mediates robust signaling with tunable activation thresholds in single cells
Cited by: 33
Author(s): Gregor Mönke, Elena Cristiano, Ana Finzel, Dhana Friedrich, Hanspeter Herzel, Martin Falcke, Alexander Loewer
Software Mentions: 2
Published: over 9 years ago

10.1002/sctm.16-0343

Microfluidic Screening Reveals Heparan Sulfate Enhances Human Mesenchymal Stem Cell Growth by Modulating Fibroblast Growth Factor-2 Transport
Cited by: 24
Author(s): Drew M. Titmarsh, Clarissa Tan, Nick Glass, Victor Nurcombe, Justin J. Cooper-White, Simon M. Cool
Software Mentions: 2
Published: over 9 years ago

10.7150/thno.42134

Super-resolution observation of lysosomal dynamics with fluorescent gold nanoparticles
Cited by: 38
Author(s): Kangqiang Qiu, Yang Du, Jiyan Liu, Jun‐Lin Guan, Hui Chao, Jiajie Diao
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-017-03780-z

Image based Machine Learning for identification of macrophage subsets
Cited by: 103
Author(s): Hassan M. Rostam, Paul M. Reynolds, Morgan R. Alexander, Nikolaj Gadegaard, Amir M. Ghaemmaghami
Software Mentions: 2
Published: about 9 years ago

10.12688/f1000research.52569.1

Bioimage analysis workflows: community resources to navigate through a complex ecosystem
Cited by: 8
Author(s): Perrine Paul‐Gilloteaux, Sébastien Tosi, Jean-Karim Hèriché, Alban Gaignard, Hervé Ménager, Raphaël Marée, Volker Baecker, Anna H. Klemm, Matúš Kalaš, Chong Zhang, Kota Miura, Julien Colombelli
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2017.00475

Predictable, Tunable Protein Production in Salmonella for Studying Host-Pathogen Interactions
Cited by: 14
Author(s): Kendal G. Cooper, Audrey Chong, Tregei Starr, Ciaran E. Finn, Olivia Steele‐Mortimer
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-57691-7

A Multi-Omics Interpretable Machine Learning Model Reveals Modes of Action of Small Molecules
Cited by: 26
Author(s): Natasha L. Patel-Murray, Miriam Adam, Nhan Huynh, Brook T. Wassie, Pamela Milani, Ernest Fraenkel
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.51678

High-dimensional analysis of intestinal immune cells during helminth infection
Cited by: 21
Author(s): Laura Ferrer‐Font, Palak Mehta, Phoebe Harmos, Alfonso Schmidt, Sally Claire Chappell, Kylie M. Price, Ian F. Hermans, Franca Ronchese, Graham Le Gros, Johannes U Mayer
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms140815810

Highly Sensitive Automated Method for DNA Damage Assessment: Gamma-H2AX Foci Counting and Cell Cycle Sorting
Cited by: 34
Author(s): Laia Hernández, Mariona Terradas, Marga Martı́n, Laura Tusell, Anna Genescà
Software Mentions: 2
Published: about 13 years ago

10.1177/2472555218824280

The Academic Pill: How Academia Contributes to Curing Diseases
Cited by: 3
Author(s): Marc Bickle
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-07599-6

Automated Training of Deep Convolutional Neural Networks for Cell Segmentation
Cited by: 109
Author(s): Sajith Kecheril Sadanandan, Petter Ranefall, Sylvie Le Guyader, Carolina Wählby
Software Mentions: 2
Published: about 9 years ago

10.3389/fimmu.2017.00627

Measuring Leukocyte Adhesion to (Primary) Endothelial Cells after Photon and Charged Particle Exposure with a Dedicated Laminar Flow Chamber
Cited by: 11
Author(s): N. Erbeldinger, Felicitas Rapp, Svetlana Ktitareva, Philipp Wendel, Anna S. Bothe, Till Dettmering, Marco Durante, Thomas Friedrich, Bianca Bertulat, Steven De Meyer, M. C. Cardoso, Stephanie Hehlgans, Franz Rödel, Claudia Fournier
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-020-58397-6

Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins
Cited by: 19
Author(s): Matthew J. G. Eldridge, Jorge A. Pereira, Francis Impens, Mélanie Hamon
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21072323

Detection of Rare Objects by Flow Cytometry: Imaging, Cell Sorting, and Deep Learning Approaches
Cited by: 27
Author(s): Denis V. Voronin, Anastasiia Kozlova, Roman A. Verkhovskii, А. V. Ermakov, Mikhail A. Makarkin, Olga A. Inozemtseva, Daniil N. Bratashov
Software Mentions: 2
Published: over 6 years ago

10.15252/embr.201947845

Myc‐dependent endothelial proliferation is controlled by phosphotyrosine 1212 in <scp>VEGF</scp> receptor‐2
Cited by: 23
Author(s): Chiara Testini, Ross O Smith, Yi Jin, Pernilla Martinsson, Ying Sun, Mattias Hedlund, Miguel Sáinz‐Jaspeado, Masabumi Shibuya, Mats Hellström, Lena Claesson‐Welsh
Software Mentions: 2
Published: almost 7 years ago

10.1126/sciadv.aba4526

Esophageal extracellular matrix hydrogel mitigates metaplastic change in a dog model of Barrett’s esophagus
Cited by: 24
Author(s): Juan Diego Naranjo, Lindsey T. Saldin, Eric Sobieski, Lina M. Quijano, Ryan C. Hill, Patrick Chan, Crisanto M Torres, Jenna L. Dziki, Madeline C. Cramer, Yoojin C. Lee, Rohit Das, Anant K. Bajwa, Rania Nossair, Molly Klimak, Lucile Marchal, Shil Patel, Sachin Velankar, Kirk C. Hansen, Kevin McGrath, Stephen F. Badylak
Software Mentions: 2
Published: about 6 years ago

10.1038/sdata.2018.81

A multi-phenotypic imaging screen to identify bacterial effectors by exogenous expression in a HeLa cell line
Cited by: 3
Author(s): Adam Collins, Alan Huett
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-017-12608-9

Nucleosome stability measured in situ by automated quantitative imaging
Cited by: 16
Author(s): László Imre, Zoltán Simándi, Attila Horváth, György Fenyőfalvi, Péter P. Nánási, Erfaneh Firouzi Niaki, Éva Hegedüs, Zsolt Bacsó, Urbain Weyemi, Rebekka Mauser, Juan Ausió, Albert Jeltsch, William M. Bonner, László Nagy, Hiroshi Kimurâ, Gábor Szabó
Software Mentions: 2
Published: almost 9 years ago

10.3390/ijms21239332

Genomic Instability Is an Early Event in Aluminium-Induced Tumorigenesis
Cited by: 8
Author(s): Stefano J. Mandriota, Mirna Tenan, Adeline Nicolle, Julia Jankowska, Paolo Ferrari, Jean-Christophe Tille, Mary-Anne Durin, Catherine Green, Sébastien P. Tabruyn, Daniela Moralli, André‐Pascal Sappino
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms22073740

RAD51 Inhibition Induces R-Loop Formation in Early G1 Phase of the Cell Cycle
Cited by: 5
Author(s): Zuzana Naščáková, Barbora Boleslavska, Václav Urban, Anna Oravetzova, Edita Vlachova, Pavel Janscak, Jana Dobrovolná
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-68567-1

Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach
Cited by: 12
Author(s): Benedikt von der Heyde, Anastasia Emmanouilidou, Eugenia Mazzaferro, Silvia Vicenzi, Ida Höijer, Tiffany Klingström, Sitaf Jumaa, Olga Dethlefsen, Harold Snieder, Eco J. C. de Geus, Adam Ameur, Erik Ingelsson, Amin Allalou, Hannah L. Brooke, Marcel den Hoed
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22126323

Proteome Profiling of PMJ2-R and Primary Peritoneal Macrophages
Cited by: 5
Author(s): А. Л. Русанов, П. М. Кожин, Olga V. Tikhonova, Victor G. Zgoda, Dmitry S. Loginov, Adéla Chlastáková, Martin Selinger, Ján Štěrba, Libor Grubhoffer, Н. Г. Лузгина
Software Mentions: 2
Published: about 5 years ago

10.3389/fncel.2019.00535

Live-Cell Assays for Cell Stress Responses Reveal New Patterns of Cell Signaling Caused by Mutations in Rhodopsin, α-Synuclein and TDP-43
Cited by: 6
Author(s): Kevin Harlen, Elizabeth C. Roush, Joseph E. Clayton, Scott Martinka, Thom Hughes
Software Mentions: 2
Published: over 6 years ago

10.15252/embr.201744837

<scp>SNX</scp> 18 regulates <scp>ATG</scp> 9A trafficking from recycling endosomes by recruiting Dynamin‐2
Cited by: 66
Author(s): Kristiane Søreng, Michael J. Munson, Christopher R. Lamb, Gunnveig Toft Bjørndal, Serhiy Pankiv, Sven R. Carlsson, Sharon A. Tooze, Anne Simonsen
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms22189758

Perturbation of TM6SF2 Expression Alters Lipid Metabolism in a Human Liver Cell Line
Cited by: 2
Author(s): Asmita Pant, Yue Chen, Annapurna Kuppa, Xiaomeng Du, Brian D. Halligan, Elizabeth K. Speliotes
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-017-19024-z

Scaffold-free generation of uniform adipose spheroids for metabolism research and drug discovery
Cited by: 85
Author(s): Aloysius J. Klingelhutz, Françoise A. Gourronc, Anna L Chaly, David Wadkins, Anthony J. Burand, Kathleen R. Markan, Sharon O. Idiga, Meng Wu, Matthew J. Potthoff, James A. Ankrum
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-020-75835-7

A versatile toolbox for semi-automatic cell-by-cell object-based colocalization analysis
Cited by: 19
Author(s): Anders Lunde, Joel C. Glover
Software Mentions: 2
Published: almost 6 years ago

10.1038/srep13113

Human cell dedifferentiation in mesenchymal condensates through controlled autophagy
Cited by: 34
Author(s): Rebecca Rose Pennock, Elen Bray, Paul R. Pryor, Sally James, Paul J. McKeegan, Roger G. Sturmey, Paul G. Genever
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12974-021-02194-z

Phloretin suppresses neuroinflammation by autophagy-mediated Nrf2 activation in macrophages
Cited by: 22
Author(s): Tess Dierckx, Mansour Haidar, Elien Grajchen, Elien Wouters, Sam Vanherle, Melanie Loix, Annick Boeykens, D. Bylemans, Kévin Hardonnière, Saadia Kerdine-Römer, Jeroen F. J. Bogie, Jerome J. A. Hendriks
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-78764-7

Leaf proteome modulation and cytological features of seagrass Cymodocea nodosa in response to long-term high CO2 exposure in volcanic vents
Cited by: 2
Author(s): Amalia Piro, Letizia Bernardo, Ilia Anna Serra, Isabel Barrote, Irene Olivé, Monya M. Costa, Luigi Lucini, Rui Santos, Silvia Mazzuca, João Silva
Software Mentions: 2
Published: over 5 years ago

10.1186/s12974-016-0602-y

Reduction of cytosolic phospholipase A2α upregulation delays the onset of symptoms in SOD1G93A mouse model of amyotrophic lateral sclerosis
Cited by: 22
Author(s): Yulia Solomonov, Nurit Hadad, Rachel Lévy
Software Mentions: 2
Published: about 10 years ago

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