pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.3390/ijms21103672

Sonic Hedgehog and Triiodothyronine Pathway Interact in Mouse Embryonic Neural Stem Cells
Cited by: 1
Author(s): Pavel Ostašov, Jan Tůma, Pavel Pitule, Jiřı́ Moravec, Zbyněk Houdek, F Vožeh, Milena Králíčková, Jan Cendelín, Václav Babuška
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.07759

Progerin reduces LAP2α-telomere association in Hutchinson-Gilford progeria
Cited by: 89
Author(s): Alexandre Chojnowski, P.P. Ong, Esther Wong, John Lim, Rafidah Mutalif, Raju Navasankari, Bamaprasad Dutta, Henry Yang, Yi Y. Liow, Siu Kwan Sze, Thomas Boudier, Alan Colman, Brian Burke, Colin L. Stewart, Oliver Dreesen
Software Mentions: 3
Published: almost 11 years ago

10.7554/eLife.70560

Processing of the ribosomal ubiquitin-like fusion protein FUBI-eS30/FAU is required for 40S maturation and depends on USP36
Cited by: 5
Author(s): Jasmin van den Heuvel, Caroline Ashiono, Ludovic Gillet, Kerstin Dörner, Emanuel Wyler, Ivo Zemp, Ulrike Kutay
Software Mentions: 3
Published: about 5 years ago

10.15252/msb.202010026

CODEX, a neural network approach to explore signaling dynamics landscapes
Cited by: 10
Author(s): Marc‐Antoine Jacques, Maciej Dobrzyński, Paolo Armando Gagliardi, Raphael Sznitman, Olivier Pertz
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1008630

Rapid 3D phenotypic analysis of neurons and organoids using data-driven cell segmentation-free machine learning
Cited by: 11
Author(s): Philipp Mergenthaler, Santosh Hariharan, James M Pemberton, Corey Lourenco, Linda Z. Penn, David W. Andrews
Software Mentions: 3
Published: over 5 years ago

10.1155/2021/9975423

Hyperion Image Analysis Depicts a Preliminary Landscape of Tumor Immune Microenvironment in OSCC with Lymph Node Metastasis
Cited by: 7
Author(s): Shang Xie, Mengjie Zhang, Xiaofeng Shan, Vicky Yau, Jianyun Zhang, Wei Wang, Yongpan Yan, Zhigang Cai
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.22693

The vacuolar-ATPase complex and assembly factors, TMEM199 and CCDC115, control HIF1α prolyl hydroxylation by regulating cellular iron levels
Cited by: 77
Author(s): A. J. Miles, Stephen P. Burr, GL Grice, James A. Nathan
Software Mentions: 3
Published: over 9 years ago

10.1101/2021.08.11.455959

Multiplexed detection of SARS-CoV-2 genomic and subgenomic RNA using in situ hybridization
Cited by: 3
Author(s): Kofi Acheampong, Dylan L. Schaff, Benjamin Emert, Jonathan I. Lake, Sam Reffsin, Emily Shea, Courtney E Comar, Leslie A. Litzky, Nigar Khurram, Rebecca L. Linn, Michael D. Feldman, Susan R. Weiss, Kathleen T. Montone, Sara Cherry, Sydney M. Shaffer
Software Mentions: 3
Published: about 5 years ago

10.15252/msb.202010135

The circadian oscillator analysed at the single‐transcript level
Cited by: 6
Author(s): Nicholas E. Phillips, Alice Hugues, Jake Yeung, Eric Durandau, Damien Nicolas, Félix Naef
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1005075

Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency
Cited by: 22
Author(s): Max Schelker, Caroline Mair, Fabian Jolmes, Robert-William Welke, Edda Klipp, Andreas Herrmann, Max Flöttmann, Christian Sieben
Software Mentions: 3
Published: almost 10 years ago

10.1016/j.celrep.2019.03.108

PAD2-Mediated Citrullination Contributes to Efficient Oligodendrocyte Differentiation and Myelination
Cited by: 53
Author(s): Ana Mendanha Falcão, Mandy Meijer, Antonella Scaglione, Puneet Rinwa, Eneritz Agirre, Jialiang Liang, Sara C. Buch-Larsen, Abeer Heskol, Rebecca Frawley, Michael Klingener, Manuel Varas-Godoy, Alexandre A.S.F. Raposo, Patrik Ernfors, Diogo S. Castro, Michael L. Nielsen, Patrizia Casaccia, Gonçalo Castelo‐Branco
Software Mentions: 3
Published: over 7 years ago

10.1128/mBio.01569-16

The Antiviral Mechanism of an Influenza A Virus Nucleoprotein-Specific Single-Domain Antibody Fragment
Cited by: 24
Author(s): Leo Hanke, Kevin E. Knockenhauer, R. Camille Brewer, Eline van Diest, Florian I. Schmidt, Thomas Schwartz, Hidde L. Ploegh
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-018-19871-4

Dysregulated fibronectin trafficking by Hsp90 inhibition restricts prostate cancer cell invasion
Cited by: 29
Author(s): Heather Armstrong, Joanna L. Gillis, I. R. Johnson, Zeyad D. Nassar, Max Moldovan, Claire Levrier, Martin C. Sadowski, Mei Yieng Chin, Emma S. Tomlinson Guns, Gerard A. Tarulli, David J. Lynn, Doug A. Brooks, Luke A. Selth, Margaret M. Centenera, Lisa M. Butler
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pbio.3000580

12-h clock regulation of genetic information flow by XBP1s
Cited by: 34
Author(s): Yinghong Pan, Heather Ballance, Huan Meng, Naomi Gonzalez, Sam-Moon Kim, Leymaan Abdurehman, Brian York, Xi Chen, Yisrael Schnytzer, Oren Levy, Clifford C. Dacso, Colleen A. McClung, Bert W. O’Malley, Silvia Liu, Bokai Zhu
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-31924-2

3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification
Cited by: 21
Author(s): Alexandr A. Kalinin, Ari Allyn-Feuer, Alex Ade, Gordon-Victor Fon, Walter Meixner, David S. Dilworth, Syed Sameed Husain, Jeffrey R. de Wet, Gerald A. Higgins, Gen Zheng, Amy L. Creekmore, John W. Wiley, James E. Verdone, Robert W. Veltri, Kenneth J. Pienta, Donald S. Coffey, Brian D. Athey, Ivo D. Dinov
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pbio.2005086

Cell-nonautonomous local and systemic responses to cell arrest enable long-bone catch-up growth in developing mice
Cited by: 35
Author(s): Alberto Roselló-Díez, Linda Madisen, Sébastien Bastide, Hongkui Zeng, Alexandra L. Joyner
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-017-12747-z

Role of autophagy in cell-penetrating peptide transfection model
Cited by: 23
Author(s): Moataz Dowaidar, Maxime Gestin, Carmine Pasquale Cerrato, Mohammed Hakim Jafferali, Helerin Margus, Paula Ann Kivistik, Kariem Ezzat, Einar Hallberg, Margus Pooga, Mattias Hällbrink, Ülo Langel
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-018-35383-7

Vasoinhibin comprises a three-helix bundle and its antiangiogenic domain is located within the first 79 residues
Cited by: 13
Author(s): Juan Pablo Robles, Magdalena Zamora, José Luis Velasco-Bolom, Miriam Tovar, Ramón Garduño‐Juárez, Thomas Bertsch, Gonzalo Martı́nez de la Escalera, Jakob Triebel, Carmen Clapp
Software Mentions: 3
Published: over 7 years ago

10.1038/s41597-019-0331-z

Profiling the effect of nafcillin on HA-MRSA D712 using bacteriological and physiological media
Cited by: 7
Author(s): Abhishek Rajput, Saugat Poudel, Hannah Tsunemoto, Michael J. Meehan, Richard Szubin, Connor A. Olson, Anne Lamsa, Yara Seif, Nicholas Dillon, Alison Vrbanac, Joseph Sugie, Samira Dahesh, Jonathan M. Monk, Pieter C. Dorrestein, Rob Knight, Victor Nizet, Bernhard Ø. Palsson, Adam M. Feist, Joe Pogliano
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0163453

Image-Based Single Cell Profiling: High-Throughput Processing of Mother Machine Experiments
Cited by: 31
Author(s): Christian Carsten Sachs, Alexander Grünberger, Stefan Helfrich, Christopher Probst, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh
Software Mentions: 3
Published: almost 10 years ago

10.7717/peerj-cs.584

Machine learning analysis of TCGA cancer data
Cited by: 9
Author(s): José Liñares-Blanco, Alejandro Pazos, Carlos Fernández-Lozano
Software Mentions: 3
Published: about 5 years ago

10.3390/ph14030195

Inhibition of Intercellular Cytosolic Traffic via Gap Junctions Reinforces Lomustine-Induced Toxicity in Glioblastoma Independent of MGMT Promoter Methylation Status
Cited by: 7
Author(s): Matthias Schneider, Anna-Laura Potthoff, Bernd O. Evert, Marius Dicks, Denise Ehrentraut, Andreas Dolf, Elena N. C. Schmidt, Niklas Schäfer, Valeri Borger, Torsten Pietsch, Mike‐Andrew Westhoff, Erdem Güresir, Andreas Waha, Hartmut Vatter, Dieter Henrik Heiland, Patrick Schuss, Ulrich Herrlinger
Software Mentions: 3
Published: over 5 years ago

10.1007/s00497-020-00398-6

Quantitative methods in microscopy to assess pollen viability in different plant taxa
Cited by: 9
Author(s): Lorenzo Ascari, Cristina Novara, Virginia Dusio, Ludovica Oddi, Consolata Siniscalco
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-018-37522-6

MITF has a central role in regulating starvation-induced autophagy in melanoma
Cited by: 60
Author(s): Katrín Möller, Sara Sigurbjörnsdóttir, Asgeir Ö. Arnthórsson, Vivian Pogenberg, Ramile Dilshat, Valerie Fock, Sólveig Hlín Brynjólfsdóttir, Christian Bindesbøll, M. Bessadóttir, Helga M. Ögmundsdóttir, Anne Simonsen, Lionel Larue, Matthias Wilmanns, Vésteinn Thórsson, Eiríkur Steingrimsson, Margrét H. Ögmundsdóttir
Software Mentions: 3
Published: over 7 years ago

10.15252/emmm.202012574

Cooperation of LIM domain‐binding 2 (LDB2) with EGR in the pathogenesis of schizophrenia
Cited by: 2
Author(s): Tetsuo Ohnishi, Yuji Kiyama, Fumiko Arima-Yoshida, Mitsutaka Kadota, Tomoe Ichikawa, Kazuyuki Yamada, Akïharu Watanabe, Hideki Ohba, Kaori Tanaka, Akihiro Nakaya, Yasue Horiuchi, Yoshimi Iwayama, Manabu Toyoshima, Itone Ogawa, Chie Shimamoto-Mitsuyama, Motoko Maekawa, Shabeesh Balan, Makoto Arai, Mitsuhiro Miyashita, Kazuya Toriumi, Yayoi Nozaki, Rumi Kurokawa, Kazuhiro Suzuki, Akane Yoshikawa, Tomoko Toyota, Toshihiko Hosoya, Hiroyuki Okuno, Haruhiko Bito, Masanari Itokawa, Shigehiro Kuraku, Toshiya Manabe, Takeo Yoshikawa
Software Mentions: 3
Published: over 5 years ago

10.1016/j.stemcr.2021.01.013

Unraveling the Developmental Roadmap toward Human Brown Adipose Tissue
Cited by: 9
Author(s): Stefania Carobbio, Anne Claire Guenantin, Myriam Bahri, Sonia Rodríguez-Fdez, Floris Honig, Ioannis Kamzolas, Isabella Samuelson, Kathleen Long, Sherine Awad, Dunja Lukovic, Slaven Erceg, Andrew Bassett, Sasha Mendjan, Ludovic Vallier, Barry Rosen, Davide Chiarugi, António Vidal-Puig
Software Mentions: 3
Published: over 5 years ago

10.3389/fonc.2019.01144

Quantitative Spatial Analysis of Metabolic Heterogeneity Across in vivo and in vitro Tumor Models
Cited by: 18
Author(s): Tiffany M. Heaster, Bennett A. Landman, Melissa C. Skala
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-91846-4

High-resolution transcriptional landscape of xeno-free human induced pluripotent stem cell-derived cerebellar organoids
Cited by: 28
Author(s): Samuel Nayler, Devika Agarwal, Fabiola Curion, Rory Bowden, Esther B. E. Becker
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-84887-2

Slc1a3-2A-CreERT2 mice reveal unique features of Bergmann glia and augment a growing collection of Cre drivers and effectors in the 129S4 genetic background
Cited by: 9
Author(s): Lech Kaczmarczyk, Nicole Reichenbach, Nelli Blank, Maria Jonson, Lars Dittrich, Gabor C. Petzold, Walker S. Jackson
Software Mentions: 3
Published: over 5 years ago

10.1186/1751-0473-8-16

CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation
Cited by: 76
Author(s): Erlend Hodneland, Tanja Kögel, Dominik Frei, Hans‐Hermann Gerdes, Arvid Lundervold
Software Mentions: 3
Published: about 13 years ago

10.3389/fonc.2021.636057

A Multi-Omics Analysis of Metastatic Melanoma Identifies a Germinal Center-Like Tumor Microenvironment in HLA-DR-Positive Tumor Areas
Cited by: 6
Author(s): Laura Gadeyne, Yannick Van Herck, Giorgia Milli, Zeynep Kalender Atak, Maddalena M. Bolognesi, Jasper Wouters, Lukas Marcelis, Angeliki Minia, Vaia Pliaka, Jan Roznac, Leonidas G. Alexopoulos, Giorgio Cattoretti, Oliver Bechter, Joost van den Oord, Frederik De Smet, Asier Antoranz, Francesca Maria Bosisio
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-53428-3

Immune cell type, cell activation, and single cell heterogeneity revealed by label-free optical methods
Cited by: 10
Author(s): Nicolas Pavillon, Nicholas I. Smith
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-59988-z

A salivary metabolite signature that reflects gingival host-microbe interactions: instability predicts gingivitis susceptibility
Cited by: 0
Author(s): Marcela M. Fernandez-Gutierrez, Sultan Imangaliyev, Andrei Prodan, Bruno G. Loos, Bart J. F. Keijser, Michiel Kleerebezem
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.620989

Characterization of the Tumor Immune Microenvironment in Lung Squamous Cell Carcinoma Using Imaging Mass Cytometry
Cited by: 17
Author(s): Ran Li, Ying Lin, Yu Wang, Shaoyuan Wang, Yang Yang, Xinlin Mu, Yu‐Sheng Chen, Zhancheng Gao
Software Mentions: 3
Published: over 5 years ago

10.3389/fimmu.2019.00094

Sialyllactose and Galactooligosaccharides Promote Epithelial Barrier Functioning and Distinctly Modulate Microbiota Composition and Short Chain Fatty Acid Production In Vitro
Cited by: 70
Author(s): Olaf Perdijk, Peter van Baarlen, Marcela M. Fernandez-Gutierrez, Frank Schuren, Sylvia Brugman, H.F.J. Savelkoul, Michiel Kleerebezem, R. J. Joost van Neerven
Software Mentions: 3
Published: over 7 years ago

10.3389/fmicb.2020.00548

Genomic and Phenotypic Analyses of Acinetobacter baumannii Isolates From Three Tertiary Care Hospitals in Thailand
Cited by: 24
Author(s): Jessica Loraine, Eva Heinz, Rosesathorn Soontarach, Grace A. Blackwell, Richard A. Stabler, Supayang Piyawan Voravuthikunchai, Potjanee Srimanote, Pattarachai Kiratisin, Nicholas R. Thomson, Peter W. Taylor
Software Mentions: 3
Published: over 6 years ago

10.15252/embr.201745642

Negative feedback via <scp>RSK</scp> modulates Erk‐dependent progression from naïve pluripotency
Cited by: 25
Author(s): Isabelle Nett, Carla Mulas, Laurent Guy, Kathryn S. Lilley, Austin Smith
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-021-86087-4

Microdroplet-based one-step RT-PCR for ultrahigh throughput single-cell multiplex gene expression analysis and rare cell detection
Cited by: 13
Author(s): Jennifer Ma, Gary Tran, Alwin M. D. Wan, Elton T. Young, Eugenia Kumacheva, Norman N. Iscove, Peter W. Zandstra
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-50010-9

Cell Type Classification and Unsupervised Morphological Phenotyping From Low-Resolution Images Using Deep Learning
Cited by: 30
Author(s): Kai Yao, Nash D. Rochman, Sean X. Sun
Software Mentions: 3
Published: almost 7 years ago

10.1111/febs.14857

Two Nimrod receptors, NimC1 and Eater, synergistically contribute to bacterial phagocytosis in Drosophila melanogaster
Cited by: 32
Author(s): Claudia Melcarne, Elodie Ramond, Jan Paul Dudzic, Andrew J. Bretscher, Éva Kurucz, István Andó, Bruno Lemaître
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-58397-6

Active nuclear import of the deacetylase Sirtuin-2 is controlled by its C-terminus and importins
Cited by: 19
Author(s): Matthew J. G. Eldridge, Jorge A. Pereira, Francis Impens, Mélanie Hamon
Software Mentions: 2
Published: over 6 years ago

10.1016/j.stemcr.2016.11.014

Cytosine-5 RNA Methylation Regulates Neural Stem Cell Differentiation and Motility
Cited by: 118
Author(s): Joana V. Flores, Lucía Cordero-Espinoza, Feride Oeztuerk-Winder, Amanda Andersson-Rolf, Tommaso Selmi, Sandra Blanco, Jignesh Tailor, Sabine Dietmann, Michaela Frye
Software Mentions: 2
Published: over 9 years ago

10.3389/fnana.2015.00142

Crowdsourcing the creation of image segmentation algorithms for connectomics
Cited by: 273
Author(s): Ignacio Arganda‐Carreras, Srinivas C. Turaga, Daniel R. Berger, Dan Cireşan, Alessandro Giusti, Luca Maria Gambardella, Juergen Schmidhuber, Dmitry Laptev, Sarvesh Dwivedi, Joachim M. Buhmann, Ting Liu, Mojtaba Seyedhosseini, Tolga Taşdizen, Lee Kamentsky, Radim Bürget, Václav Uher, Xiao Tan, Changming Sun, Tuan D. Pham, Erhan Bas, Mustafa Gökhan Uzunbaş, Albert Cardona, Johannes Schindelin, H. Sebastian Seung
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-019-47521-w

A principled strategy for mapping enhancers to genes
Cited by: 13
Author(s): Dongkyeong Kim, Hongjoo An, Randall S. Shearer, Mohamed Sharif, Chuandong Fan, Jinok Choi, Sun Hwa Ryu, Yungki Park
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-021-82752-w

Integrins mediate placental extracellular vesicle trafficking to lung and liver in vivo
Cited by: 27
Author(s): Sean L. Nguyen, Soo Hyun Ahn, Jacob W. Greenberg, Benjamin W. Collaer, Dalen Agnew, Ritu Arora, Margaret G. Petroff
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2020.00493

Telomere Length Measurement by Molecular Combing
Cited by: 34
Author(s): Vívian Francília Silva Kahl, Joshua A. M. Allen, Christopher B. Nelson, Alexander P. Sobinoff, Michael Lee, Tatjana Kilo, Raja S. Vasireddy, Hilda A. Pickett
Software Mentions: 2
Published: about 6 years ago

10.3389/fnins.2021.629067

Recent Trends and Perspectives in Cerebral Organoids Imaging and Analysis
Cited by: 11
Author(s): Clara Brémond Martin, Camille Simon Chane, Cédric Clouchoux, Aymeric Histace
Software Mentions: 2
Published: about 5 years ago

10.3389/fchem.2019.00791

Neuraminidase-3 Is a Negative Regulator of LFA-1 Adhesion
Cited by: 13
Author(s): Md. Amran Howlader, Caishun Li, Chunxia Zou, Radhika Chakraberty, Njuacha Ebesoh, Christopher W. Cairo
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2017.00475

Predictable, Tunable Protein Production in Salmonella for Studying Host-Pathogen Interactions
Cited by: 14
Author(s): Kendal G. Cooper, Audrey Chong, Tregei Starr, Ciaran E. Finn, Olivia Steele‐Mortimer
Software Mentions: 2
Published: over 8 years ago

10.3389/fcell.2020.00579

Glucose Availability Alters Gene and Protein Expression of Several Newly Classified and Putative Solute Carriers in Mice Cortex Cell Culture and D. melanogaster
Cited by: 6
Author(s): Mikaela M. Ceder, Emilia Lekholm, Axel Klaesson, Rekha Tripathi, Nadine Schweizer, Lydia Weldai, Sourabh Patil, Robert Fredriksson
Software Mentions: 2
Published: about 6 years ago

10.3389/fcell.2021.657192

Loss of stra8 Increases Germ Cell Apoptosis but Is Still Compatible With Sperm Production in Atlantic Salmon (Salmo salar)
Cited by: 5
Author(s): Kai Ove Skaftnesmo, Diego Crespo, Lene Kleppe, Eva Andersson, Rolf B. Edvardsen, Birgitta Norberg, Per Gunnar Fjelldal, Tom Hansen, Rüdiger Schulz, Anna Wargelius
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.00292

Transcriptomic and Functional Screens Reveal MicroRNAs That Modulate Prostate Cancer Metastasis
Cited by: 6
Author(s): S. Madhusudana Rao, Alison Howarth, Patrick Krätschmer, Ann Snaith, Clarence Yapp, Daniel Ebner, Freddie C. Hamdy, Claire Edwards
Software Mentions: 2
Published: over 6 years ago

10.12688/f1000research.52569.1

Bioimage analysis workflows: community resources to navigate through a complex ecosystem
Cited by: 8
Author(s): Perrine Paul‐Gilloteaux, Sébastien Tosi, Jean-Karim Hèriché, Alban Gaignard, Hervé Ménager, Raphaël Marée, Volker Baecker, Anna H. Klemm, Matúš Kalaš, Chong Zhang, Kota Miura, Julien Colombelli
Software Mentions: 2
Published: over 5 years ago

10.12688/f1000research.52531.1

Developing open-source software for bioimage analysis: opportunities and challenges
Cited by: 20
Author(s): Florian Levet, Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-68567-1

Translating GWAS-identified loci for cardiac rhythm and rate using an in vivo image- and CRISPR/Cas9-based approach
Cited by: 12
Author(s): Benedikt von der Heyde, Anastasia Emmanouilidou, Eugenia Mazzaferro, Silvia Vicenzi, Ida Höijer, Tiffany Klingström, Sitaf Jumaa, Olga Dethlefsen, Harold Snieder, Eco J. C. de Geus, Adam Ameur, Erik Ingelsson, Amin Allalou, Hannah L. Brooke, Marcel den Hoed
Software Mentions: 2
Published: about 6 years ago

10.7150/thno.42134

Super-resolution observation of lysosomal dynamics with fluorescent gold nanoparticles
Cited by: 38
Author(s): Kangqiang Qiu, Yang Du, Jiyan Liu, Jun‐Lin Guan, Hui Chao, Jiajie Diao
Software Mentions: 2
Published: over 6 years ago

10.1002/2211-5463.13036

Spatiotemporal immunolocalisation of REST in the brain of healthy ageing and Alzheimer’s disease rats
Cited by: 3
Author(s): Myrthe Mampay, María Velasco-Estévez, Sara O. Rolle, Aisling M. Chaney, Hervé Boutin, Kumlesh K. Dev, Emad Moeendarbary, Graham K. Sheridan
Software Mentions: 2
Published: over 5 years ago

10.1155/2017/8303959

Platelet Lysate: The Better Choice for Jaw Periosteal Cell Mineralization
Cited by: 4
Author(s): Yvonne Wanner, Felix Umrath, Marc Waidmann, Siegmar Reinert, Dorothea Alexander
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2021.671756

The 5-Phosphatase SHIP2 Promotes Neutrophil Chemotaxis and Recruitment
Cited by: 3
Author(s): Melina Michael, Barrett L. McCormick, Karen E. Anderson, Utsa Karmakar, Matthieu Vermeren, Stéphane Schurmans, Augustin Amour, Sonja Vermeren
Software Mentions: 2
Published: over 5 years ago

10.1186/s13072-017-0157-x

H2A O-GlcNAcylation at serine 40 functions genomic protection in association with acetylated H2AZ or γH2AX
Cited by: 12
Author(s): Koji Hayakawa, Mitsuko Hirosawa, Ruiko Tani, Chikako Yoneda, Satoshi Tanaka, Kunio Shiota
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-80178-4

A role for orphan nuclear receptor liver receptor homolog-1 (LRH-1, NR5A2) in primordial follicle activation
Cited by: 11
Author(s): Marie-Charlotte Meinsohn, Camilla H K Hughes, Anthony Estienne, Hatice D. Saatcioglu, David Pépin, Raj Duggavathi, Bruce D. Murphy
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-50334-6

The human long non-coding RNA gene RMRP has pleiotropic effects and regulates cell-cycle progression at G2
Cited by: 20
Author(s): Svetlana Vakkilainen, Tiina Skoog, Elisabet Einarsdottir, Anna Middleton, Minna Pekkinen, Tiina Öhman, Shintaro Katayama, Kaarel Krjutškov, Panu E. Kovanen, Markku Varjosalo, Arne Lindqvist, Juha Kere, Outi Mäkitie
Software Mentions: 2
Published: almost 7 years ago

10.12688/f1000research.16802.1

An in vitro model for studying CNS white matter: functional properties and experimental approaches
Cited by: 12
Author(s): Silvia Bijland, Gemma Thomson, Matthew Euston, Kyriakos Michail, Katja Thümmler, Steve Mücklisch, Colin L. Crawford, Susan C. Barnett, Marκ McLaughlin, Thomas Anderson, Christopher Linington, Euan R. Brown, Eric R. Kalkman, Julia M. Edgar
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-78764-7

Leaf proteome modulation and cytological features of seagrass Cymodocea nodosa in response to long-term high CO2 exposure in volcanic vents
Cited by: 2
Author(s): Amalia Piro, Letizia Bernardo, Ilia Anna Serra, Isabel Barrote, Irene Olivé, Monya M. Costa, Luigi Lucini, Rui Santos, Silvia Mazzuca, João Silva
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-87494-3

Lymphedema alters lipolytic, lipogenic, immune and angiogenic properties of adipose tissue: a hypothesis-generating study in breast cancer survivors
Cited by: 12
Author(s): Michal Koc, Martin Wald, Zuzana Varaliová, Barbora Ondrůjová, Terezie Čížková, Milan Brychta, Jana Kračmerová, Lenka Beranová, Jan Pala, Veronika Šrámková, Michaela Šiklová, Jan Gojda, Lenka Rossmeislová
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-88382-6

Aggressive and recurrent ovarian cancers upregulate ephrinA5, a non-canonical effector of EphA2 signaling duality
Cited by: 10
Author(s): Joonas Jukonen, Lidia Moyano‐Galceran, Katrin Höpfner, Elina Pietilä, Laura Lehtinen, Kaisa Huhtinen, Erika Gucciardo, Johanna Hynninen, Sakari Hietanen, Seija Grénman, Päivi M. Ojala, Olli Carpén, Kaisa Lehti
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-48929-0

A high-throughput screen to identify novel synthetic lethal compounds for the treatment of E-cadherin-deficient cells
Cited by: 13
Author(s): Henry Beetham, Augustine Chen, Bryony J. Telford, Andrew Single, Kate E. Jarman, Kurt Lackovic, Andreas Luxenburger, Parry Guilford
Software Mentions: 2
Published: almost 7 years ago

10.1002/sctm.16-0343

Microfluidic Screening Reveals Heparan Sulfate Enhances Human Mesenchymal Stem Cell Growth by Modulating Fibroblast Growth Factor-2 Transport
Cited by: 24
Author(s): Drew M. Titmarsh, Clarissa Tan, Nick Glass, Victor Nurcombe, Justin J. Cooper-White, Simon M. Cool
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-75835-7

A versatile toolbox for semi-automatic cell-by-cell object-based colocalization analysis
Cited by: 19
Author(s): Anders Lunde, Joel C. Glover
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-90569-w

Gene expression alterations in salivary gland epithelia of Sjögren’s syndrome patients are associated with clinical and histopathological manifestations
Cited by: 8
Author(s): Ariana Dela Cruz, Vinay K. Kartha, Andrew Tilston-Lünel, Ruifa Mi, Taylor L. Reynolds, Michaël Mingueneau, Stefano Monti, Janicke Liaaen Jensen, Kathrine Skarstein, Xaralabos Varelas, Maria A. Kukuruzinska
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-92830-8

Serine residues 726 and 780 have nonredundant roles regulating STAT5a activity in luminal breast cancer
Cited by: 6
Author(s): Alicia E. Woock, Jacqueline M Grible, Amy L. Olex, J. Chuck Harrell, Patricija Zot, Michael O. Idowu, Charles V. Clevenger
Software Mentions: 2
Published: about 5 years ago

10.15252/embr.201947845

Myc‐dependent endothelial proliferation is controlled by phosphotyrosine 1212 in <scp>VEGF</scp> receptor‐2
Cited by: 23
Author(s): Chiara Testini, Ross O Smith, Yi Jin, Pernilla Martinsson, Ying Sun, Mattias Hedlund, Miguel Sáinz‐Jaspeado, Masabumi Shibuya, Mats Hellström, Lena Claesson‐Welsh
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2017.00627

Measuring Leukocyte Adhesion to (Primary) Endothelial Cells after Photon and Charged Particle Exposure with a Dedicated Laminar Flow Chamber
Cited by: 11
Author(s): N. Erbeldinger, Felicitas Rapp, Svetlana Ktitareva, Philipp Wendel, Anna S. Bothe, Till Dettmering, Marco Durante, Thomas Friedrich, Bianca Bertulat, Steven De Meyer, M. C. Cardoso, Stephanie Hehlgans, Franz Rödel, Claudia Fournier
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-019-47659-7

Colorectal cancer cells respond differentially to autophagy inhibition in vivo
Cited by: 42
Author(s): Annie Lauzier, Josiann Normandeau-Guimond, Vanessa Vaillancourt-Lavigueur, Vincent Boivin, Martine Charbonneau, Nathalie Rivard, Michelle S. Scott, Claire M. Dubois, Steve Jean
Software Mentions: 2
Published: about 7 years ago

10.3389/fncel.2019.00535

Live-Cell Assays for Cell Stress Responses Reveal New Patterns of Cell Signaling Caused by Mutations in Rhodopsin, α-Synuclein and TDP-43
Cited by: 6
Author(s): Kevin Harlen, Elizabeth C. Roush, Joseph E. Clayton, Scott Martinka, Thom Hughes
Software Mentions: 2
Published: over 6 years ago

10.15252/embr.201744837

<scp>SNX</scp> 18 regulates <scp>ATG</scp> 9A trafficking from recycling endosomes by recruiting Dynamin‐2
Cited by: 66
Author(s): Kristiane Søreng, Michael J. Munson, Christopher R. Lamb, Gunnveig Toft Bjørndal, Serhiy Pankiv, Sven R. Carlsson, Sharon A. Tooze, Anne Simonsen
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.578669

Environmental Factors Driving Spatial Heterogeneity in Desert Halophile Microbial Communities
Cited by: 9
Author(s): Gherman Uritskiy, Adam Munn, Micah Dailey, Diego Rivera Gelsinger, Samantha Getsin, Alfonso F. Dávila, Peter McCullough, James Taylor, Jocelyne DiRuggiero
Software Mentions: 2
Published: almost 6 years ago

10.3389/fnagi.2021.704041

Poly (ADP-ribose) Interacts With Phosphorylated α-Synuclein in Post Mortem PD Samples
Cited by: 13
Author(s): Laura Puentes, Zsofia Lengyel‐Zhand, Ji Youn Lee, Chia-Ju Hsieh, Mark E. Schneider, Kimberly J. Edwards, Kelvin C. Luk, Virginia M.‐Y. Lee, John Q. Trojanowski, Robert H. Mach
Software Mentions: 2
Published: about 5 years ago

10.3389/fcell.2020.00570

ABHD11 Is Critical for Embryonic Stem Cell Expansion, Differentiation and Lipid Metabolic Homeostasis
Cited by: 4
Author(s): Gaoke Liu, Yan Ruan, Junlei Zhang, Xueyue Wang, Wei Wu, Ping He, Jiali Wang, Jiaxiang Xiong, Yuda Cheng, Lianlian Liu, Yi Yang, Yanping Tian, Rui Jian
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-57691-7

A Multi-Omics Interpretable Machine Learning Model Reveals Modes of Action of Small Molecules
Cited by: 26
Author(s): Natasha L. Patel-Murray, Miriam Adam, Nhan Huynh, Brook T. Wassie, Pamela Milani, Ernest Fraenkel
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2020.584314

Transcriptome Response and Spatial Pattern of Gene Expression in the Primate Subventricular Zone Neurogenic Niche After Cerebral Ischemia
Cited by: 6
Author(s): Monika C Chongtham, Haifang Wang, Christina Thaller, Nai–Hua Hsiao, Ivan H. Vachkov, Stoyan Pavlov, Lorenz H Williamson, Tetsumori Yamashima, Anastassia Stoykova, Jun Yan, Gregor Eichele, Anton B. Tonchev
Software Mentions: 2
Published: over 5 years ago

10.15252/emmm.201910852

A thiol‐bound drug reservoir enhances APR‐246‐induced mutant p53 tumor cell death
Cited by: 20
Author(s): Sophia Ceder, Sofi Eriksson, Emarndeena H Cheteh, Swati Dawar, Mariana Corrales Benitez, Vladimir J. N. Bykov, Kenji M. Fujihara, Mélodie Grandin, Xiaodun Li, Susanne Ramm, Corina Behrenbruch, Kaylene J. Simpson, Frédéric Hollande, Lars Abrahmsén, Nicholas J. Clemons, Klas G. Wiman
Software Mentions: 2
Published: over 5 years ago

10.1042/ETLS20160025

Computational biology: deep learning
Cited by: 60
Author(s): William Jones, Kaur Alasoo, Dmytro Fishman, Leopold Parts
Software Mentions: 2
Published: almost 9 years ago

10.1073/pnas.2021450118

Targeting transcriptional regulation of SARS-CoV-2 entry factors ACE2 and TMPRSS2
Cited by: 133
Author(s): Yuanyuan Qiao, Xiaoming Wang, Rahul Mannan, Sethuramasundaram Pitchiaya, Yuping Zhang, Jesse W Wotring, Lanbo Xiao, Dan R. Robinson, Yi-Mi Wu, Jean C. Tien, Xuhong Cao, Stephanie A. Simko, Ingrid J. Apel, Pushpinder Bawa, Steven Kregel, Sathiya Pandi Narayanan, Gregory Raskind, Stephanie J. Ellison, Abhijit Parolia, Sylvia Zelenka-Wang, Lisa McMurry, Fengyun Su, Rui Wang, Yunhui Cheng, Andrew Delekta, Zejie Mei, Carla D. Pretto, Shaomeng Wang, Rohit Mehra, Jonathan Z. Sexton, Arul M. Chinnaiyan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.ppat.1009580

A Ran-binding protein facilitates nuclear import of human papillomavirus type 16
Cited by: 10
Author(s): Kun-Yi Lai, Matteo Rizzato, Inci Aydin, Ruth Villalonga-Planells, Hannes C.A. Drexler, Mario Schelhaas
Software Mentions: 2
Published: over 5 years ago

10.1016/j.molcel.2018.02.023

Discovery and Characterization of ZUFSP/ZUP1, a Distinct Deubiquitinase Class Important for Genome Stability
Cited by: 130
Author(s): Dominika Kwaśna, S.A. Abdul Rehman, N. Jayaprakash, S. Matthews, Ross Madden, Virginia De Cesare, Simone Weidlich, Satpal Virdee, Ivan Ahel, Ian Gibbs-Seymour, Yogesh Kulathu
Software Mentions: 2
Published: over 8 years ago

10.1111/acel.13468

Inhibition of the cGAS‐STING pathway ameliorates the premature senescence hallmarks of Ataxia‐Telangiectasia brain organoids
Cited by: 28
Author(s): Julio Aguado, Harman Chaggar, Cecilia Gómez-Inclán, Mohammed R. Shaker, Hannah C Leeson, Alan Mackay‐Sim, Ernst J. Wolvetang
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1008554

The ATGL lipase cooperates with ABHD5 to mobilize lipids for hepatitis C virus assembly
Cited by: 21
Author(s): Gabrielle Vièyres, I. Reichert, Arnaud Carpentier, Florian W. R. Vondran, Thomas Pietschmann
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1007698

Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites
Cited by: 24
Author(s): Mary S Dickinson, Lindsey Anderson, Bobbie-Jo M. Webb-Robertson, Joshua Hansen, Richard Smith, Aaron Wright, Kevin Hybiske
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.ppat.1008656

Influenza A viruses use multivalent sialic acid clusters for cell binding and receptor activation
Cited by: 34
Author(s): Christian Sieben, Erdinç Sezgin, Christian Eggeling, Suliana Manley
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.ppat.1003640

A Structural Basis for BRD2/4-Mediated Host Chromatin Interaction and Oligomer Assembly of Kaposi Sarcoma-Associated Herpesvirus and Murine Gammaherpesvirus LANA Proteins
Cited by: 75
Author(s): Jan Hellert, Magdalena Weidner-Glunde, J. Krausze, Ulrike Richter, Heiko Adler, Roman Fedorov, Marcel Pietrek, Jessica Rückert, Christiane Ritter, Thomas F. Schulz, Thorsten Lührs
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.ppat.1005263

Interferon-γ Inhibits Ebola Virus Infection
Cited by: 69
Author(s): Bethany A. Rhein, Linda S. Powers, Kai J. Rogers, Manu Anantpadma, Brajesh K. Singh, Yoshio Sakurai, Thomas B. Bair, Catherine L. Miller-Hunt, Patrick L. Sinn, Robert A. Davey, Martha M. Monick, Wendy Maury
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.ppat.1006354

A second wave of Salmonella T3SS1 activity prolongs the lifespan of infected epithelial cells
Cited by: 42
Author(s): Ciaran E. Finn, Audrey Chong, Kendal G. Cooper, Tregei Starr, Olivia Steele‐Mortimer
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.ppat.1008690

Inhibition of anti-viral stress granule formation by coronavirus endoribonuclease nsp15 ensures efficient virus replication
Cited by: 68
Author(s): Bo Gao, Xiaoyi Gong, Shouguo Fang, Wenlian Weng, Huan Wang, Hongyan Chu, Yingjie Sun, Meng Chen, Lei Tan, Song Chen, Xusheng Qiu, Weiwei Liu, Maria Forlenza, Chan Ding, Ying Liao
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-11-248

Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
Cited by: 73
Author(s): Pekka Ruusuvuori, Tarmo Äijö, Sharif Chowdhury, Cecilia Garmendia-Torres, Jyrki Selinummi, Mirko Birbaumer, Andrew T. Dudley, Lucas Pelkmans, Olli Yli‐Harja
Software Mentions: 2
Published: over 16 years ago

10.1083/jcb.201908132

LUZP1 and the tumor suppressor EPLIN modulate actin stability to restrict primary cilia formation
Cited by: 22
Author(s): João Gonçalves, Amit Sharma, Étienne Coyaud, Estelle Laurent, Brian Raught, Laurence Pelletier
Software Mentions: 2
Published: about 6 years ago

10.1242/jcs.249706

DROSHA is recruited to DNA damage sites by the MRN complex to promote non-homologous end joining
Cited by: 9
Author(s): Matteo Cabrini, Marco Roncador, Alessandro Galbiati, Lina Cipolla, Antonio Maffia, Fabio Iannelli, Simone Sabbioneda, Fabrizio d’Adda di Fagagna, Sofia Francia
Software Mentions: 2
Published: over 5 years ago

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