pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.1038/cddiscovery.2016.77

Global histone modification fingerprinting in human cells using epigenetic reverse phase protein array
Cited by: 12
Author(s): Marina Partolina, Hazel C. Thoms, Kenneth G. MacLeod, Giovanny Rodriguez Blanco, Matthew N. Clarke, Anuroop Venkateswaran Venkatasubramani, Rima Beesoo, Vladimir Larionov, Vidushi S. Neergheen-Bhujun, Bryan Serrels, Hiroshi Kimurâ, Neil O. Carragher, Alexander Kagansky
Software Mentions: 1
Published: over 9 years ago

10.1038/s41420-020-00342-7

MEKK3-MEK5-ERK5 signaling promotes mitochondrial degradation
Cited by: 4
Author(s): Jane E. Craig, Joseph N. Miller, Raju R. Rayavarapu, Zhenya Hong, Gamze B. Bulut, Wei Zhuang, Sadie Miki Sakurada, Jamshid Temirov, Jonathan Low, Taosheng Chen, Shondra M. Pruett-Miller, Lily Huang, Malia B. Potts
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13008-018-0039-z

Measuring DNA content in live cells by fluorescence microscopy
Cited by: 28
Author(s): Cecil J. Gomes, Michael W. Harman, Sara Centuori, Charles W. Wolgemuth, Jesse D. Martinez
Software Mentions: 1
Published: about 8 years ago

10.1016/j.cmet.2011.06.017

Pyruvate Kinase Triggers a Metabolic Feedback Loop that Controls Redox Metabolism in Respiring Cells
Cited by: 185
Author(s): Nana‐Maria Grüning, Mark Rinnerthaler, Katharina Bluemlein, Michael Mülleder, Mirjam M. C. Wamelink, Hans Lehrach, Cornelis Jakobs, Michael Breitenbach, Markus Ralser
Software Mentions: 1
Published: about 15 years ago

10.1007/s12195-018-0542-y

Systems Modeling Identifies Divergent Receptor Tyrosine Kinase Reprogramming to MAPK Pathway Inhibition
Cited by: 9
Author(s): Allison Claas, Lyla Atta, Simon Gordonov, Aaron S. Meyer, Douglas A. Lauffenburger
Software Mentions: 1
Published: about 8 years ago

10.1007/s00018-019-03010-x

A disease causing ATLASTIN 3 mutation affects multiple endoplasmic reticulum-related pathways
Cited by: 32
Author(s): Laura Behrendt, Ingo Kurth, Christoph Kaether
Software Mentions: 1
Published: over 7 years ago

10.1007/s00018-018-2989-3

Increases in cytosolic Ca2+ induce dynamin- and calcineurin-dependent internalisation of CFTR
Cited by: 12
Author(s): Waseema Patel, P. Hutton Moore, Maria F. Sassano, Miquéias Lopes‐Pacheco, A. N. Aleksandrov, Margarida D. Amaral, Robert Tarran, Michael A. Gray
Software Mentions: 1
Published: almost 8 years ago

10.1111/cpr.13013

Dermal papilla cells and melanocytes response to physiological oxygen levels depends on their interactions
Cited by: 7
Author(s): Carla M. Abreu, Rui L. Reis, A. P. Marques
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2015.08.066

APOBEC3B-Mediated Cytidine Deamination Is Required for Estrogen Receptor Action in Breast Cancer
Cited by: 91
Author(s): Manikandan Periyasamy, Hetal Patel, Chun‐Fui Lai, Van Nguyen, Ekaterina Nevedomskaya, Alison Harrod, Roslin Russell, Judit Reményi, Anna Maria Ochocka, Ross S Thomas, Frances V. Fuller-Pace, Balázs Győrffy, Carlos Caldas, Naveenan Navaratnam, Jason S. Carroll, Wilbert Zwart, R. Charles Coombes, Luca Magnani, Laki Buluwela, Simak Ali
Software Mentions: 1
Published: about 11 years ago

10.1016/j.celrep.2019.05.002

Human RIF1-Protein Phosphatase 1 Prevents Degradation and Breakage of Nascent DNA on Replication Stalling
Cited by: 52
Author(s): Javier Garzón, Sebastian Ursich, Massimo Lopes, Shin‐ichiro Hiraga, Anne Donaldson
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2018.11.064

IP3 Receptors Preferentially Associate with ER-Lysosome Contact Sites and Selectively Deliver Ca2+ to Lysosomes
Cited by: 116
Author(s): Peace Atakpa, Nagendra Babu Thillaiappan, Stefania Mataragka, David L. Prole, Colin W. Taylor
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.celrep.2019.11.001

Group A Streptococcal S Protein Utilizes Red Blood Cells as Immune Camouflage and Is a Critical Determinant for Immune Evasion
Cited by: 16
Author(s): Igor H. Wierzbicki, Anaamika Campeau, Diana Dehaini, Maya Holay, Xiaoli Wei, Trever T Greene, Man Ying, Jenna S. Sands, Anne Lamsa, Elina I. Zúñiga, Kit Pogliano, Ronnie H. Fang, Christopher N. LaRock, Liangfang Zhang, David J. Gonzalez
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.celrep.2019.12.076

Follicular Regulatory T Cells Can Access the Germinal Center Independently of CXCR5
Cited by: 41
Author(s): Ine Vanderleyden, Sigrid Fra‐Bido, Silvia Innocentin, Marisa Stebegg, Hanneke Okkenhaug, Nicola Evans-Bailey, Wim Pierson, Alice E. Denton, Michelle A. Linterman
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.crmeth.2021.100043

Highly efficient manipulation of nervous system gene expression with NEPTUNE
Cited by: 4
Author(s): Katrin Mangold, J. Mašek, Jiehua He, Urban Lendahl, Elaine Fuchs, Emma R. Andersson
Software Mentions: 1
Published: about 5 years ago

10.1016/j.cels.2018.06.006

Interdependence between EGFR and Phosphatases Spatially Established by Vesicular Dynamics Generates a Growth Factor Sensing and Responding Network
Cited by: 37
Author(s): Angel Stanoev, Amit Mhamane, Klaus C. Schuermann, Hernán E. Grecco, Wayne Stallaert, Martin Baumdick, Yannick Brüggemann, Maitreyi Sadanand Joshi, Pedro Roda-Navarro, Sven Fengler, Rabea Stockert, Lisaweta Roßmannek, Jutta Luig, Aneta Koseska, Philippe I. H. Bastiaens
Software Mentions: 1
Published: about 8 years ago

10.1016/j.cels.2016.11.014

Noise Induces Hopping between NF-κB Entrainment Modes
Cited by: 41
Author(s): Mathias L. Heltberg, Ryan Kellogg, Sandeep Krishna, Savaş Tay, Mogens H. Jensen
Software Mentions: 1
Published: almost 10 years ago

10.1007/s00441-018-2808-z

Neural crest stem cells protect spinal cord neurons from excitotoxic damage and inhibit glial activation by secretion of brain-derived neurotrophic factor
Cited by: 16
Author(s): Nikos Schizas, Niclas König, Bo Andersson, Svitlana Vasylovska, Jan Hoeber, Elena N. Kozlova, Nils P Hailer
Software Mentions: 1
Published: over 8 years ago

10.3390/cells10081975

Alkylaminophenol and GPR17 Agonist for Glioblastoma Therapy: A Combinational Approach for Enhanced Cell Death Activity
Cited by: 4
Author(s): Phuong L. Doan, Phung Kim Phi Nguyen, Akshaya Murugesan, Nuno R. Candeias, Olli Yli‐Harja, Meenakshisundaram Kandhavelu
Software Mentions: 1
Published: about 5 years ago

10.3390/cells9051089

RNA Interference Screening Identifies Novel Roles for RhoBTB1 and RhoBTB3 in Membrane Trafficking Events in Mammalian Cells
Cited by: 6
Author(s): Maeve Long, Tilen Kranjc, Margaritha M Mysior, Jeremy C. Simpson
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9030681

Glioblastoma Multiforme Stem Cell Cycle Arrest by Alkylaminophenol through the Modulation of EGFR and CSC Signaling Pathways
Cited by: 21
Author(s): Phuong L. Doan, Aliyu Musa, Akshaya Murugesan, Vili Sipilä, Nuno R. Candeias, Frank Emmert‐Streib, Pekka Ruusuvuori, Kirsi J. Granberg, Olli Yli‐Harja, Meenakshisundaram Kandhavelu
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10082108

Unraveling Human AQP5-PIP Molecular Interaction and Effect on AQP5 Salivary Glands Localization in SS Patients
Cited by: 14
Author(s): Clara Chivasso, Veronika Nešverová, Michael Järvå, Anne Blanchard, Kristie L. Rose, Fredrik Öberg, Zhen Wang, Maud Martin, Florent Lhotellerie, Egor Zindy, Bruna Rayane Teodoro Junqueira, Karelle Leroy, Benoît Vanhollebeke, Valérie Delforge, Nargis Bolaky, Jason Perret, Muhammad Shahnawaz Soyfoo, Stefania Moscato, Chiara Baldini, François Chaumont, Letizia Mattii, Kevin L. Schey, Yvonne Myal, Susanna Törnroth-Horsefield, Christine Delporte
Software Mentions: 1
Published: about 5 years ago

10.3390/cells9051129

Investigation of Ultrasound-Mediated Intracellular Ca2+ Oscillations in HIT-T15 Pancreatic β-Cell Line
Cited by: 7
Author(s): Chi Woo Yoon, Nan Sook Lee, Kweon Mo Koo, San Moon, Kyosuk Goo, Hayong Jung, Changhan Yoon, Hae Gyun Lim, K. Kirk Shung
Software Mentions: 1
Published: over 6 years ago

10.3390/cells8050475

ER-Targeted Beclin 1 Supports Autophagosome Biogenesis in the Absence of ULK1 and ULK2 Kinases
Cited by: 9
Author(s): Tahira Anwar, Xiaonan Liu, Taina Suntio, Annika Marjamäki, Joanna Biazik, Edmond Y W Chan, Markku Varjosalo, Eeva‐Liisa Eskelinen
Software Mentions: 1
Published: over 7 years ago

10.3390/cells9010163

Adipose Stem Cell-Derived Extracellular Vesicles Induce Proliferation of Schwann Cells via Internalization
Cited by: 32
Author(s): Maximilian Haertinger, Tamara Weiss, Anda Mann, Annette Tabi, Victoria Brandel, Christine Radtke
Software Mentions: 1
Published: over 6 years ago

10.3390/cells10092459

Weight Pulling: A Novel Mouse Model of Human Progressive Resistance Exercise
Cited by: 15
Author(s): Wenyuan G. Zhu, Jamie E. Hibbert, Kuan Hung Lin, Nathaniel D. Steinert, Jake L. Lemens, Kent W. Jorgenson, Sarah M. Newman, Dudley W. Lamming, Troy A. Hornberger
Software Mentions: 1
Published: about 5 years ago

10.3390/cells10030617

Genetic Deletion of Polo-Like Kinase 2 Induces a Pro-Fibrotic Pulmonary Phenotype
Cited by: 8
Author(s): Theresa A. Kant, Manja Newe, Luise Winter, Maximilian Hoffmann, Susanne Kämmerer, Erik Klapproth, Karolina Künzel, Mark Philipp Kühnel, Lavinia Neubert, Ali El‐Armouche, Stephan R. Künzel
Software Mentions: 1
Published: over 5 years ago

10.3390/cells10092474

P-Rex1 Controls Sphingosine 1-Phosphate Receptor Signalling, Morphology, and Cell-Cycle Progression in Neuronal Cells
Cited by: 2
Author(s): Elizabeth Hampson, Elpida Tsonou, Martin J. Baker, David C. Hornigold, Roderick E. Hubbard, Andrew E. Massey, Heidi C. E. Welch
Software Mentions: 1
Published: about 5 years ago

10.3390/cells8111417

Subversion of Host Cell Mitochondria by RSV to Favor Virus Production is Dependent on Inhibition of Mitochondrial Complex I and ROS Generation
Cited by: 25
Author(s): Mengjie Hu, Marie A. Bogoyevitch, David A. Jans
Software Mentions: 1
Published: almost 7 years ago

10.3390/cells9061405

Newcastle Disease Virus (NDV) Oncolytic Activity in Human Glioma Tumors Is Dependent on CDKN2A-Type I IFN Gene Cluster Codeletion
Cited by: 17
Author(s): Noemí García-Romero, Irina Palacín-Aliana, Susana Esteban-Rubio, Rodrigo Madurga, Sergio Ríus-Rocabert, Josefa Carrión-Navarro, Jesús Presa, Sara Cuadrado-Castano, Pilar Sánchez-Gómez, Adolfo García‐Sastre, Estanislao Nistal-Villán, Ángel Ayuso-Sacido
Software Mentions: 1
Published: over 6 years ago

10.3390/cells8121531

An Autophagy Modifier Screen Identifies Small Molecules Capable of Reducing Autophagosome Accumulation in a Model of CLN3-Mediated Neurodegeneration
Cited by: 13
Author(s): Anton Petcherski, Uma Chandrachud, Elisabeth Butz, Madeleine C Klein, Wen-Ning Zhao, Surya A. Reis, Stephen J. Haggarty, Mika O. Ruonala, Susan L. Cotman
Software Mentions: 1
Published: almost 7 years ago

10.3390/cells9071702

VPS72/YL1-Mediated H2A.Z Deposition Is Required for Nuclear Reassembly after Mitosis
Cited by: 12
Author(s): Daniel Moreno-Andrés, Hideki Yokoyama, Anja Scheufen, Guillaume Holzer, Hongqi Lue, Anna Katharina Schellhaus, Marion Weberruß, Motoki Takagi, Wolfram Antonin
Software Mentions: 1
Published: about 6 years ago

10.3390/cells8101144

The Role of Two-Pore Channels in Norepinephrine-Induced [Ca2+]i Rise in Rat Aortic Smooth Muscle Cells and Aorta Contraction
Cited by: 8
Author(s): Sergei K. Trufanov, E. Yu. Rybakova, P. P. Avdonin, Alexandra A. Tsitrina, Irina Zharkikh, Н. В. Гончаров, Richard O. Jenkins, П. В. Авдонин
Software Mentions: 1
Published: about 7 years ago

10.3390/cells2020284

A Checklist for Successful Quantitative Live Cell Imaging in Systems Biology
Cited by: 9
Author(s): Myong-Hee Sung
Software Mentions: 1
Published: over 13 years ago

10.3390/cells10030613

Hypoxia-Induced Reactivity of Tumor-Associated Astrocytes Affects Glioma Cell Properties
Cited by: 8
Author(s): Vasiliki Pantazopoulou, Pauline Jeannot, Rebecca Rosberg, Tracy J. Berg, Alexander Pietras
Software Mentions: 1
Published: over 5 years ago

10.1039/d0sc02154g

Enhancing the biocompatibility of rhodamine fluorescent probes by a neighbouring group effect
Cited by: 40
Author(s): Jonas Bucevičius, Georgij Kostiuk, Rūta Gerasimaitė, Tanja Gilat, Gražvydas Lukinavičius
Software Mentions: 1
Published: almost 7 years ago

10.1007/s00412-017-0631-z

The PRDM9 KRAB domain is required for meiosis and involved in protein interactions
Cited by: 58
Author(s): Yukiko Imai, Frédéric Baudat, Miguel Taillepierre, Marcello Stanzione, Attila Tóth, Bernard de Massy
Software Mentions: 1
Published: over 9 years ago

10.2174/13862073113166660062

Digital Holographic Microscopy: A Quantitative Label-Free Microscopy Technique for Phenotypic Screening
Cited by: 85
Author(s): Benjamin Rappaz, Billy Breton, Etienne Shaffer, Gerardo Turcatti
Software Mentions: 1
Published: over 12 years ago

10.1038/s42003-021-01862-3

Lin28, a major translation reprogramming factor, gains access to YB-1-packaged mRNA through its cold-shock domain
Cited by: 13
Author(s): Anastasiia Samsonova, Krystel El Hage, Bénédicte Desforges, Vandana Joshi, Marie‐Jeanne Clément, Guillaume Lambert, Hélène Henrie, Nicolas Babault, Pierrick Craveur, Rachid C. Maroun, Emilie Steiner, Ahmed Bouhss, Alexandre Maucuer, Dmitry N. Lyabin, Lev P. Ovchinnikov, Loïc Hamon, David Pastré
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-018-0244-y

Niclosamide activates the NLRP3 inflammasome by intracellular acidification and mitochondrial inhibition
Cited by: 18
Author(s): Uyen Tran, Toshimori Kitami
Software Mentions: 1
Published: almost 8 years ago

10.1038/s42003-021-02276-x

Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging
Cited by: 6
Author(s): Martin L. Tomov, Alison O’Neil, Hamdah Shafqat Abbasi, Beth A. Cimini, Anne E. Carpenter, Lee L. Rubin, Mark Bathe
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-020-1035-9

Mutation of LRP1 in cardiac neural crest cells causes congenital heart defects by perturbing outflow lengthening
Cited by: 12
Author(s): Jiuann-Huey Ivy Lin, Timothy N. Feinstein, Anupma Jha, Jacob T. McCleary, Juan Xu, Angelo B. Arrigo, Grace Rong, Lindsey M. Maclay, Taylor Ridge, Xinpeng Xu, Cecilia Lo
Software Mentions: 1
Published: over 6 years ago

10.1038/s42003-018-0218-0

RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples
Cited by: 22
Author(s): Chenglin Wu, Michele Simonetti, Carla Rossell, Marco Mignardi, Reza Mirzazadeh, Laura Annaratone, Caterina Marchiò, Anna Sapino, Magda Bienko, Nicola Crosetto, Mats Nilsson
Software Mentions: 1
Published: almost 8 years ago

10.1038/s42003-021-02136-8

Elevating CDCA3 levels in non-small cell lung cancer enhances sensitivity to platinum-based chemotherapy
Cited by: 10
Author(s): Katrina Kildey, Neha S. Gandhi, Katherine B. Sahin, Esha Shah, Eric D. Boittier, Pascal H.G. Duijf, Christopher J. Molloy, Joshua T. Burgess, Sam Beard, Emma Bolderson, Amila Suraweera, Derek J. Richard, Kenneth J. O’Byrne, Mark N. Adams
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02278-9

Genotoxic stress in constitutive trisomies induces autophagy and the innate immune response via the cGAS-STING pathway
Cited by: 18
Author(s): Maria Krivega, Clara M Stiefel, Sahar Karbassi, Line Lykke Andersen, Narendra Kumar Chunduri, Neysan Donnelly, Andreas Pichlmair, Zuzana Storchová
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02502-6

Developing ovine mammary terminal duct lobular units have a dynamic mucosal and stromal immune microenvironment
Cited by: 9
Author(s): Dorottya Nagy, Clare M. C. Gillis, Katie Davies, Abigail L. Fowden, Paul Rees, John W. Wills, Katherine Hughes
Software Mentions: 1
Published: about 5 years ago

10.1038/s42003-021-01744-8

High-throughput screening and validation of antibodies against synaptic proteins to explore opioid signaling dynamics
Cited by: 6
Author(s): Mariana Lemos Duarte, Nikita A. Trimbake, Achla Gupta, Christine Tumanut, Xiao Fan, C. G. Woods, Akila Ram, Ivone Gomes, Erin N. Bobeck, Deborah Schechtman, Lakshmi A. Devi
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02296-7

An integrated framework for quantifying immune-tumour interactions in a 3D co-culture model
Cited by: 5
Author(s): Gheed Al-Hity, Feng Yang, Eduard Campillo-Funollet, Andrew E. Greenstein, Hazel Hunt, Myrthe Mampay, Haya Intabli, Marta Falcinelli, Anotida Madzvamuse, Chandrasekhar Venkataraman, Melanie S. Flint
Software Mentions: 1
Published: over 5 years ago

10.1016/j.cmpb.2019.104991

CALIMA: The semi-automated open-source calcium imaging analyzer
Cited by: 22
Author(s): F.D.W. Radstake, Elles A. L. Raaijmakers, Regina Lüttge, Svitlana Zinger, Jean-Philippe Frimat
Software Mentions: 1
Published: about 7 years ago

10.1016/j.csbj.2020.08.018

DeepScratch: Single-cell based topological metrics of scratch wound assays
Cited by: 8
Author(s): Avelino Javer, Jens Rittscher, Heba Sailem
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.coisb.2018.05.004

Machine learning and image-based profiling in drug discovery
Cited by: 119
Author(s): Christian Scheeder, Florian Heigwer, Michael Boutros
Software Mentions: 1
Published: about 8 years ago

10.1002/cyto.a.23987

Label‐Free Leukemia Monitoring by Computer Vision
Cited by: 33
Author(s): Minh Doan, Marian Case, Dino Mašić, Holger Hennig, Claire McQuin, Juan C. Caicedo, Shantanu Singh, Allen Goodman, Olaf Wolkenhauer, Huw D. Summers, David Jamieson, Frederik W. van Delft, Andrew Filby, Anne E. Carpenter, Paul Rees, Julie Irving
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2020.105511

Single molecule mRNA fluorescent in situ hybridization combined with immunofluorescence in S. cerevisiae: Dataset and quantification
Cited by: 9
Author(s): Anna Maekiniemi, Robert H. Singer, Evelina Tutucci
Software Mentions: 1
Published: over 6 years ago

10.1242/dev.138271

mTORC1 signaling and primary cilia are required for brain ventricle morphogenesis
Cited by: 54
Author(s): Philippe Foerster, Marie Daclin, Asm Shihavuddin, Marion Faucourt, Alessandra Boletta, Auguste Genovesio, Nathalie Spassky
Software Mentions: 1
Published: almost 11 years ago

10.1242/dev.194555

The Arp2/3 complex is critical for colonisation of the mouse skin by melanoblasts
Cited by: 9
Author(s): Vasileios Papalazarou, Karthic Swaminathan, Farah Jaber-Hijazi, Heather J. Spence, Ines Lahmann, Colin Nixon, Manuel Salmerón-Sánchez, Hans-Henning Arnold, Klemens Rottner, Laura M. Machesky
Software Mentions: 1
Published: almost 7 years ago

10.1242/dev.170373

APETALA2 control of barley internode elongation
Cited by: 26
Author(s): Vrushali Patil, Hannah I. McDermott, Trisha McAllister, Michael Cummins, Joana Clara Silva, Ewan Mollison, Rowan Meikle, Jenny Morris, Pete E. Hedley, Robbie Waugh, Christoph Dockter, Mats Hansson, Sarah M. McKim
Software Mentions: 1
Published: almost 8 years ago

10.1242/dev.152975

Myostatin-like proteins regulate synaptic function and neuronal morphology
Cited by: 35
Author(s): Hrvoje Augustin, Kieran McGourty, Joern R. Steinert, Helena M. Cochemé, Jennifer Adcott, Melissa Cabecinha, Alec Vincent, Els F. Halff, Josef T. Kittler, Emmanuel Boucrot, Linda Partridge
Software Mentions: 1
Published: almost 10 years ago

10.1007/s00125-021-05387-6

Pancreatic beta cell autophagy is impaired in type 1 diabetes
Cited by: 49
Author(s): Charanya Muralidharan, Abass M. Conteh, Michelle Marasco, Justin J. Crowder, Jeroen Kuipers, Pascal de Boer, Amelia K. Linnemann
Software Mentions: 1
Published: over 5 years ago

10.3390/diagnostics8020024

Optimization of Stress-Based Microfluidic Testing for Methicillin Resistance in Staphylococcus aureus Strains
Cited by: 2
Author(s): Maxim Kalashnikov, Jean C. Lee, Alexis F. Sauer-Budge
Software Mentions: 1
Published: over 8 years ago

10.3390/diagnostics11060967

Investigating the Impact of the Bit Depth of Fluorescence-Stained Images on the Performance of Deep Learning-Based Nuclei Instance Segmentation
Cited by: 3
Author(s): Amirreza Mahbod, Gerald Schaefer, Christine Löw, Georg Dorffner, Rupert Ecker, Isabella Ellinger
Software Mentions: 1
Published: over 5 years ago

10.1242/dmm.034157

Use of 4-phenylbutyrate to define therapeutic parameters for reducing intracerebral hemorrhage and myopathy in Col4a1 mutant mice
Cited by: 21
Author(s): Genki Hayashi, Cassandre Labelle‐Dumais, Douglas B. Gould
Software Mentions: 1
Published: almost 9 years ago

10.1242/dmm.021972

A novel mouse model of Tuberous Sclerosis Complex (TSC): eye-specific Tsc1-ablation disrupts visual pathway development
Cited by: 10
Author(s): Iwan Jones, Anna-Carin Hägglund, Göran Törnqvist, Christoffer Nord, Ulf Ahlgren, Leif Carlsson
Software Mentions: 1
Published: almost 12 years ago

10.1242/dmm.028605

A novel mouse model of anterior segment dysgenesis (ASD): conditional deletion ofTsc1disrupts ciliary body and iris development
Cited by: 17
Author(s): Anna-Carin Hägglund, Iwan Jones, Leif Carlsson
Software Mentions: 1
Published: over 9 years ago

10.1016/j.ebiom.2015.05.021

Azithromycin Synergizes with Cationic Antimicrobial Peptides to Exert Bactericidal and Therapeutic Activity Against Highly Multidrug-Resistant Gram-Negative Bacterial Pathogens
Cited by: 203
Author(s): Leo Lin, Poochit Nonejuie, Jason Munguia, Andrew Hollands, Joshua Olson, Quang Dam, Monika Kumaraswamy, Heriberto Rivera, Ross Corriden, Manfred Rohde, Mary E. Hensler, Michael D. Burkart, Joe Pogliano, George Sakoulas, Victor Nizet
Software Mentions: 1
Published: over 11 years ago

10.1016/j.ebiom.2016.04.014

A Class of Diacylglycerol Acyltransferase 1 Inhibitors Identified by a Combination of Phenotypic High-throughput Screening, Genomics, and Genetics
Cited by: 14
Author(s): Kirsten Tschapalda, Yaqin Zhang, Li Liu, Kseniya Golovnina, Thomas Schlemper, Thomas O. Eichmann, Madhu Lal‐Nag, Urmila Sreenivasan, John C. McLenithan, Slava Ziegler, Carole Sztalryd, Achim Lass, Douglas S. Auld, Brian Oliver, Herbert Waldmann, Zhuyin Li, Min Shen, Matthew B. Boxer, Mathias Beller
Software Mentions: 1
Published: over 10 years ago

10.1186/s13550-020-00663-9

Radiobiological and dosimetric assessment of DNA-intercalated 99mTc-complexes bearing acridine orange derivatives
Cited by: 8
Author(s): A. Belchior, Salvatore Di Maria, Célia Fernandes, P. Vaz, António Paulo, Paula Raposinho
Software Mentions: 1
Published: about 6 years ago

10.1186/s13550-021-00802-w

In vitro proof of concept studies of radiotoxicity from Auger electron-emitter thallium-201
Cited by: 8
Author(s): Katarzyna M. Osytek, Philip J. Blower, Inês Costa, Gareth E. Smith, Vincenzo Abbate, Samantha Y.A. Terry
Software Mentions: 1
Published: over 5 years ago

10.15252/embj.201797677

<scp>HP</scp> 1α targets the chromosomal passenger complex for activation at heterochromatin before mitotic entry
Cited by: 36
Author(s): Jan Gustav Ruppert, Kumiko Samejima, Melpomeni Platani, Òscar Molina, Hiroshi Kimurâ, A. Arockia Jeyaprakash, Sachio Ohta
Software Mentions: 1
Published: over 8 years ago

10.15252/embj.2020105889

Reproducible image handling and analysis
Cited by: 26
Author(s): Kota Miura, Simon F. Nørrelykke
Software Mentions: 1
Published: over 5 years ago

10.1002/emmm.201303356

Defects in <scp>GABA</scp> metabolism affect selective autophagy pathways and are alleviated by m <scp>TOR</scp> inhibition
Cited by: 58
Author(s): Ronak Lakhani, Kara R. Vogel, Andreas Till, Jingjing Liu, Sarah F. Burnett, K. Michael Gibson, Suresh Subramani
Software Mentions: 1
Published: over 12 years ago

10.15252/emmm.201809034

Vulnerability of invasive glioblastoma cells to lysosomal membrane destabilization
Cited by: 35
Author(s): Vadim Le Joncour, Pauliina Filppu, Mervi T. Hyvönen, Minna Holopainen, S. Turunen, Harri Sihto, Isabel Burghardt, Heikki Joensuu, Olli Tynninen, Juha E. Jääskeläinen, Michael Weller, Kaisa Lehti, Reijo Käkelä, Pirjo Laakkonen
Software Mentions: 1
Published: over 7 years ago

10.15252/embr.201641983

Human <scp>RIF</scp> 1 and protein phosphatase 1 stimulate <scp>DNA</scp> replication origin licensing but suppress origin activation
Cited by: 117
Author(s): Shin‐ichiro Hiraga, Tony Ly, Javier Garzón, Zuzana Hořejšı́, Yoshinobu Ohkubo, Akinori Endo, Chikashi Obuse, Simon J. Boulton, Angus I. Lamond, Anne Donaldson
Software Mentions: 1
Published: over 9 years ago

10.1080/22221751.2018.1559709

The clinically licensed antifungal drug itraconazole inhibits influenza virus in vitro and in vivo
Cited by: 38
Author(s): Sebastian Schloer, Jonas Goretzko, Alexander Kühnl, Linda Brunotte, Stephan Ludwig, Ursula Rescher
Software Mentions: 1
Published: almost 8 years ago

10.1007/s10096-017-3089-2

In vitro antimicrobial susceptibility testing methods: agar dilution to 3D tissue-engineered models
Cited by: 77
Author(s): Anika Schumacher, T. Vranken, Abhishek Malhotra, Jacobus J. Arts, Pamela Habibović
Software Mentions: 1
Published: about 9 years ago

10.1111/ejn.14129

Implementation of deep neural networks to count dopamine neurons in substantia nigra
Cited by: 30
Author(s): Anna‐Maija Penttinen, Ilmari Parkkinen, Sami Blom, Jaakko Kopra, Jaan‐Olle Andressoo, Kari Pitkänen, Merja H. Voutilainen, Märt Saarma, Mikko Airavaara
Software Mentions: 1
Published: about 8 years ago

10.1007/s00259-018-4107-z

Region-by-region analysis of PET, MRI, and histology in en bloc-resected oligodendrogliomas reveals intra-tumoral heterogeneity
Cited by: 24
Author(s): Kenney Roy Roodakker, Ali Alhuseinalkhudhur, Mohammed Al-Jaff, Maria Georganaki, Maria Zetterling, Shala Ghaderi Berntsson, Torsten Danfors, Robin Strand, Per-Henrík Edqvist, Anna Dimberg, Elna‐Marie Larsson, Anja Smits
Software Mentions: 1
Published: about 8 years ago

10.1140/epje/s10189-021-00074-1

Light- and magnetically actuated FePt microswimmers
Cited by: 15
Author(s): Vincent Mauricio Kadiri, Jan-Philipp Günther, S. Nikhilesh Kottapalli, Rahul Goyal, Florian Peter, Mariana Alarcón‐Correa, Kwanghyo Son, Hannah‐Noa Barad, Michael Börsch, Peer Fischer
Software Mentions: 1
Published: over 5 years ago

10.1111/exd.13813

Patients with congenital ichthyosis and <scp>TGM</scp> 1 mutations overexpress other <scp>ARCI</scp> genes in the skin: Part of a barrier repair response?
Cited by: 10
Author(s): Hanqian Zhang, Maja Ericsson, Simone Weström, Anders Vahlquist, Marie Virtanen, Hans Törmä
Software Mentions: 1
Published: almost 8 years ago

10.1038/s12276-019-0303-6

Induced cardiac pacemaker cells survive metabolic stress owing to their low metabolic demand
Cited by: 8
Author(s): Jing Gu, Sandra I. Grijalva, Natasha Fernandez, Elizabeth Kim, D. Brian Foster, Hee Cheol Cho
Software Mentions: 1
Published: about 7 years ago

10.1016/j.expneurol.2020.113529

The spatiotemporal spread of cervical spinal cord contusion injury pathology revealed by 3D in-line phase contrast synchrotron X-ray microtomography
Cited by: 9
Author(s): Merrick C. Strotton, Andrew J. Bodey, Kaz Wanelik, Carl Hobbs, Christoph Rau, Elizabeth J. Bradbury
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.19037.1

Recent advances in tissue imaging for cancer research
Cited by: 11
Author(s): Óscar Maiques, Mirella Georgouli, Victoria Sanz-Moreno
Software Mentions: 1
Published: almost 7 years ago

10.12688/f1000research.25485.1

Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists
Cited by: 11
Author(s): Gabriel G. Martins, Fabrice P. Cordelières, Julien Colombelli, Rocco D’Antuono, Ofra Golani, Romain Guiet, Robert Haase, Anna H. Klemm, Marion Louveaux, Perrine Paul‐Gilloteaux, Jean-Yves Tinévez, Kota Miura
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.26977.2

TAPAS: Towards Automated Processing and Analysis of multi-dimensional bioimage data
Cited by: 1
Author(s): Jean-François Gilles, Thomas Boudier
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.7217.3

Machine learning models identify molecules active against the Ebola virus in vitro
Cited by: 44
Author(s): Sean Ekins, Joel S. Freundlich, Alex M. Clark, Manu Anantpadma, Robert A. Davey, Peter B. Madrid
Software Mentions: 1
Published: over 9 years ago

10.12688/f1000research.23580.2

Apolipoprotein E expression pattern in human induced pluripotent stem cells during in vitro neural induction
Cited by: 5
Author(s): Hyun Ah Lee, Paulina Nowosiad, Lucia M. Dutan Polit, Jack Price, Deepak Srivastava, Sandrine Thuret
Software Mentions: 1
Published: about 6 years ago

10.1096/fba.2018-00055

Bicaudal D1 impairs autophagosome maturation in chronic obstructive pulmonary disease
Cited by: 12
Author(s): Nicolas Mercado, Thomas Colley, Jonathan Baker, Chaitanya Vuppussetty, Yuta Kono, Colin Clarke, Sharon A. Tooze, Terje Johansen, Peter J. Barnes
Software Mentions: 1
Published: almost 7 years ago

10.1096/fj.13-240879

Genome‐wide protein QTL mapping identifies human plasma kallikrein as a post‐translational regulator of serum uPAR levels
Cited by: 28
Author(s): Michael A. Portelli, Mateusz Siedliński, Ceri E. Stewart, Dirkje S. Postma, Maartje A.E. Nieuwenhuis, Judith M. Vonk, Peter Nürnberg, Janine Altmüller, Miriam F. Moffatt, Andrew J. Wardlaw, Stuart G. Parker, Martin Connolly, Gerard H. Koppelman, Ian Sayers
Software Mentions: 1
Published: almost 13 years ago

10.1096/fj.13-244210

Inhibition of Janus kinase signaling during controlled mechanical ventilation prevents ventilation‐induced diaphragm dysfunction
Cited by: 36
Author(s): Ira J. Smith, Guillermo Godinez, Baljit Singh, Kelly McCaughey, Raniel Alcantara, Tarikere L. Gururaja, Melissa Ho, Hanh Nguyen, Annabelle M. Friera, Kathy White, John McLaughlin, David V. Hansen, Jason M. Romero, Kristen A. Baltgalvis, Mark D. Claypool, Wei Li, Wayne Lang, George Yam, Marina S. Gelman, Rongxian Ding, Stephanie Yung, Daniel P. Creger, Yan Chen, Rajinder Singh, Ashley J. Smuder, Michael P. Wiggs, Oh‐Sung Kwon, Kurt J. Sollanek, Scott K. Powers, Esteban S. Masuda, Vanessa Taylor, Donald G. Payan, Taisei Kinoshita, Todd M. Kinsella
Software Mentions: 1
Published: over 12 years ago

10.1002/2211-5463.13153

iPSC screening for drug repurposing identifies anti‐RNA virus agents modulating host cell susceptibility
Cited by: 16
Author(s): Keiko Imamura, Yoshio Sakurai, Takako Enami, Ran Shibukawa, Yoshimi Nishi, Akira Ohta, Tsugumine Shu, Jitsutaro Kawaguchi, Sayaka Okada, Thomas Hoenen, Jiro Yasuda, Haruhisa Inoue
Software Mentions: 1
Published: over 5 years ago

10.1186/s12987-017-0059-0

Accelerated differentiation of human induced pluripotent stem cells to blood–brain barrier endothelial cells
Cited by: 129
Author(s): Emma K. Hollmann, Alison L. Bailey, Archit V. Potharazu, M. Diana Neely, Aaron B. Bowman, Ethan S. Lippmann
Software Mentions: 1
Published: over 9 years ago

10.1080/19336934.2018.1502535

Sex-lethal in neurons controls female body growth inDrosophila
Cited by: 4
Author(s): Annick Sawala, Alex P. Gould
Software Mentions: 1
Published: over 8 years ago

10.3389/fbioe.2016.00041

Human Mesenchymal Stem Cell Morphology and Migration on Microtextured Titanium
Cited by: 19
Author(s): Brittany L. Banik, Thomas Riley, Christina J. Platt, Justin L. Brown
Software Mentions: 1
Published: over 10 years ago

10.3389/fbioe.2014.00025

Anima: Modular Workflow System for Comprehensive Image Data Analysis
Cited by: 12
Author(s): Ville Rantanen, Miko Valori, Sampsa Hautaniemi
Software Mentions: 1
Published: about 12 years ago

10.3389/fbioe.2020.604123

Electrospun PCL/PLA Scaffolds Are More Suitable Carriers of Placental Mesenchymal Stromal Cells Than Collagen/Elastin Scaffolds and Prevent Wound Contraction in a Mouse Model of Wound Healing
Cited by: 16
Author(s): Eva Vonbrunn, Marc Mueller, Melanie Pichlsberger, Monika Sundl, Alexander Helmer, Stefanie Angela Wallner, Beate Rinner, Alexandru‐Cristian Tuca, Lars‐Peter Kamolz, Dagmar Brislinger, Birgit Glasmacher, Ingrid Lang-Olip
Software Mentions: 1
Published: almost 6 years ago

10.3389/fbioe.2020.568092

Recapitulation of Human Embryonic Heartbeat to Promote Differentiation of Hepatic Endoderm to Hepatoblasts
Cited by: 2
Author(s): Koki Yoshimoto, Nicolas Minier, Jiandong Yang, Satoshi Imamura, Kaylene C. Stocking, Janmesh Patel, Shiho Terada, Yoshikazu Hirai, Ken‐ichiro Kamei
Software Mentions: 1
Published: about 6 years ago

10.3389/fbioe.2021.644648

Intravital Metabolic Autofluorescence Imaging Captures Macrophage Heterogeneity Across Normal and Cancerous Tissue
Cited by: 16
Author(s): Tiffany M. Heaster, Alexa R. Heaton, Paul M. Sondel, Melissa C. Skala
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2018.00087

Designed Surface Topographies Control ICAM-1 Expression in Tonsil-Derived Human Stromal Cells
Cited by: 10
Author(s): Aliaksei Vasilevich, Frédéric Mourcin, Anouk Mentink, Frits Hulshof, Nick R. M. Beijer, Yiping Zhao, Marloes Levers, Bernke J. Papenburg, Shantanu Singh, Anne E. Carpenter, Dimitrios Stamatialis, Clemens van Blitterswijk, Karin Tarte, Jan de Boer
Software Mentions: 1
Published: over 8 years ago

10.3389/fcell.2020.00506

A Nucleolar Isoform of the Drosophila Ubiquitin Specific Protease dUSP36 Regulates MYC-Dependent Cell Growth
Cited by: 7
Author(s): Dominique Thevenon, Ilham Seffouh, Catherine Pillet, Xènia Crespo-Yàñez, Marie-Odile Fauvarque, Emmanuel Taillebourg
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2021.626404

Akt Is S-Palmitoylated: A New Layer of Regulation for Akt
Cited by: 12
Author(s): Matı́as Blaustein, Estefanía Piegari, Camila Martínez Calejman, Antonella Vila, Analía Amante, María Victoria Manese, Ari Zeida, Laurence Abrami, Mariela Veggetti, David A. Guertin, F. Gisou van der Goot, María M. Corvi, Alejandro Colman‐Lerner
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.604030

The Olfactory Organ Is Populated by Neutrophils and Macrophages During Early Development
Cited by: 6
Author(s): M. Fernanda Palominos, Kathleen E. Whitlock
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2020.00504

Focused Ultrasound Stimulates ER Localized Mechanosensitive PANNEXIN-1 to Mediate Intracellular Calcium Release in Invasive Cancer Cells
Cited by: 20
Author(s): Nan Sook Lee, Chi Woo Yoon, Qing Wang, San Moon, Kweon Mo Koo, Hayong Jung, Ruimin Chen, Laiming Jiang, Guoxing Lu, Antony Fernandez, Robert H. Chow, Andrew C. Weitz, Paul M. Salvaterra, Fabien Pinaud, K. Kirk Shung
Software Mentions: 1
Published: over 6 years ago

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