pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.3390/cells9061405

Newcastle Disease Virus (NDV) Oncolytic Activity in Human Glioma Tumors Is Dependent on CDKN2A-Type I IFN Gene Cluster Codeletion
Cited by: 17
Author(s): Noemí García-Romero, Irina Palacín-Aliana, Susana Esteban-Rubio, Rodrigo Madurga, Sergio Ríus-Rocabert, Josefa Carrión-Navarro, Jesús Presa, Sara Cuadrado-Castano, Pilar Sánchez-Gómez, Adolfo García‐Sastre, Estanislao Nistal-Villán, Ángel Ayuso-Sacido
Software Mentions: 1
Published: over 5 years ago

10.3390/cells8121531

An Autophagy Modifier Screen Identifies Small Molecules Capable of Reducing Autophagosome Accumulation in a Model of CLN3-Mediated Neurodegeneration
Cited by: 13
Author(s): Anton Petcherski, Uma Chandrachud, Elisabeth Butz, Madeleine C Klein, Wen-Ning Zhao, Surya A. Reis, Stephen J. Haggarty, Mika O. Ruonala, Susan L. Cotman
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9071702

VPS72/YL1-Mediated H2A.Z Deposition Is Required for Nuclear Reassembly after Mitosis
Cited by: 12
Author(s): Daniel Moreno-Andrés, Hideki Yokoyama, Anja Scheufen, Guillaume Holzer, Hongqi Lue, Anna Katharina Schellhaus, Marion Weberruß, Motoki Takagi, Wolfram Antonin
Software Mentions: 1
Published: over 5 years ago

10.3390/cells8101144

The Role of Two-Pore Channels in Norepinephrine-Induced [Ca2+]i Rise in Rat Aortic Smooth Muscle Cells and Aorta Contraction
Cited by: 8
Author(s): Sergei K. Trufanov, E. Yu. Rybakova, P. P. Avdonin, Alexandra A. Tsitrina, Irina Zharkikh, Н. В. Гончаров, Richard O. Jenkins, П. В. Авдонин
Software Mentions: 1
Published: about 6 years ago

10.3390/cells2020284

A Checklist for Successful Quantitative Live Cell Imaging in Systems Biology
Cited by: 9
Author(s): Myong-Hee Sung
Software Mentions: 1
Published: over 12 years ago

10.3390/cells10030613

Hypoxia-Induced Reactivity of Tumor-Associated Astrocytes Affects Glioma Cell Properties
Cited by: 8
Author(s): Vasiliki Pantazopoulou, Pauline Jeannot, Rebecca Rosberg, Tracy J. Berg, Alexander Pietras
Software Mentions: 1
Published: over 4 years ago

10.1039/d0sc02154g

Enhancing the biocompatibility of rhodamine fluorescent probes by a neighbouring group effect
Cited by: 40
Author(s): Jonas Bucevičius, Georgij Kostiuk, Rūta Gerasimaitė, Tanja Gilat, Gražvydas Lukinavičius
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00412-017-0631-z

The PRDM9 KRAB domain is required for meiosis and involved in protein interactions
Cited by: 58
Author(s): Yukiko Imai, Frédéric Baudat, Miguel Taillepierre, Marcello Stanzione, Attila Tóth, Bernard de Massy
Software Mentions: 1
Published: over 8 years ago

10.2174/13862073113166660062

Digital Holographic Microscopy: A Quantitative Label-Free Microscopy Technique for Phenotypic Screening
Cited by: 85
Author(s): Benjamin Rappaz, Billy Breton, Etienne Shaffer, Gerardo Turcatti
Software Mentions: 1
Published: almost 12 years ago

10.1038/s42003-021-01862-3

Lin28, a major translation reprogramming factor, gains access to YB-1-packaged mRNA through its cold-shock domain
Cited by: 13
Author(s): Anastasiia Samsonova, Krystel El Hage, Bénédicte Desforges, Vandana Joshi, Marie‐Jeanne Clément, Guillaume Lambert, Hélène Henrie, Nicolas Babault, Pierrick Craveur, Rachid C. Maroun, Emilie Steiner, Ahmed Bouhss, Alexandre Maucuer, Dmitry N. Lyabin, Lev P. Ovchinnikov, Loïc Hamon, David Pastré
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-018-0244-y

Niclosamide activates the NLRP3 inflammasome by intracellular acidification and mitochondrial inhibition
Cited by: 18
Author(s): Uyen Tran, Toshimori Kitami
Software Mentions: 1
Published: almost 7 years ago

10.1038/s42003-021-02276-x

Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging
Cited by: 6
Author(s): Martin L. Tomov, Alison O’Neil, Hamdah Shafqat Abbasi, Beth A. Cimini, Anne E. Carpenter, Lee L. Rubin, Mark Bathe
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-020-1035-9

Mutation of LRP1 in cardiac neural crest cells causes congenital heart defects by perturbing outflow lengthening
Cited by: 12
Author(s): Jiuann-Huey Ivy Lin, Timothy N. Feinstein, Anupma Jha, Jacob T. McCleary, Juan Xu, Angelo B. Arrigo, Grace Rong, Lindsey M. Maclay, Taylor Ridge, Xinpeng Xu, Cecilia Lo
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-018-0218-0

RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples
Cited by: 22
Author(s): Chenglin Wu, Michele Simonetti, Carla Rossell, Marco Mignardi, Reza Mirzazadeh, Laura Annaratone, Caterina Marchiò, Anna Sapino, Magda Bienko, Nicola Crosetto, Mats Nilsson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s42003-021-02136-8

Elevating CDCA3 levels in non-small cell lung cancer enhances sensitivity to platinum-based chemotherapy
Cited by: 10
Author(s): Katrina Kildey, Neha S. Gandhi, Katherine B. Sahin, Esha Shah, Eric D. Boittier, Pascal H.G. Duijf, Christopher J. Molloy, Joshua T. Burgess, Sam Beard, Emma Bolderson, Amila Suraweera, Derek J. Richard, Kenneth J. O’Byrne, Mark N. Adams
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-021-02278-9

Genotoxic stress in constitutive trisomies induces autophagy and the innate immune response via the cGAS-STING pathway
Cited by: 18
Author(s): Maria Krivega, Clara M Stiefel, Sahar Karbassi, Line Lykke Andersen, Narendra Kumar Chunduri, Neysan Donnelly, Andreas Pichlmair, Zuzana Storchová
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-021-02502-6

Developing ovine mammary terminal duct lobular units have a dynamic mucosal and stromal immune microenvironment
Cited by: 9
Author(s): Dorottya Nagy, Clare M. C. Gillis, Katie Davies, Abigail L. Fowden, Paul Rees, John W. Wills, Katherine Hughes
Software Mentions: 1
Published: about 4 years ago

10.1038/s42003-021-01744-8

High-throughput screening and validation of antibodies against synaptic proteins to explore opioid signaling dynamics
Cited by: 6
Author(s): Mariana Lemos Duarte, Nikita A. Trimbake, Achla Gupta, Christine Tumanut, Xiao Fan, C. G. Woods, Akila Ram, Ivone Gomes, Erin N. Bobeck, Deborah Schechtman, Lakshmi A. Devi
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-021-02296-7

An integrated framework for quantifying immune-tumour interactions in a 3D co-culture model
Cited by: 5
Author(s): Gheed Al-Hity, Feng Yang, Eduard Campillo-Funollet, Andrew E. Greenstein, Hazel Hunt, Myrthe Mampay, Haya Intabli, Marta Falcinelli, Anotida Madzvamuse, Chandrasekhar Venkataraman, Melanie S. Flint
Software Mentions: 1
Published: over 4 years ago

10.1016/j.cmpb.2019.104991

CALIMA: The semi-automated open-source calcium imaging analyzer
Cited by: 22
Author(s): F.D.W. Radstake, Elles A. L. Raaijmakers, Regina Lüttge, Svitlana Zinger, Jean-Philippe Frimat
Software Mentions: 1
Published: about 6 years ago

10.1016/j.csbj.2020.08.018

DeepScratch: Single-cell based topological metrics of scratch wound assays
Cited by: 8
Author(s): Avelino Javer, Jens Rittscher, Heba Sailem
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.32490

Lymphatic endothelium stimulates melanoma metastasis and invasion via MMP14-dependent Notch3 and β1-integrin activation
Cited by: 29
Author(s): Pirita Pekkonen, Sanni Alve, Giuseppe Balistreri, Silvia Gramolelli, Olga Tatti-Bugaeva, Ilkka Paatero, Otso Niiranen, Krista Tuohinto, Nina Perälä, Adewale Taiwo, Nadezhda Zinovkina, Pauliina Repo, Katherine Icay, Johanna Ivaska, Pipsa Saharinen, Sampsa Hautaniemi, Kaisa Lehti, Päivi M. Ojala
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.03939

Kinetic competition during the transcription cycle results in stochastic RNA processing
Cited by: 177
Author(s): Antoine Coulon, Matthew L. Ferguson, Valeria de Turris, Murali Palangat, Carson C. Chow, Daniel R. Larson
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.11880

Ceapins inhibit ATF6α signaling by selectively preventing transport of ATF6α to the Golgi apparatus during ER stress
Cited by: 104
Author(s): Ciara M Gallagher, Peter Walter
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.11878

Ceapins are a new class of unfolded protein response inhibitors, selectively targeting the ATF6α branch
Cited by: 136
Author(s): Ciara M Gallagher, Carolina Garri, Erica L. Cain, Kenny Kean‐Hooi Ang, Christopher G. Wilson, Steven Chen, Brian R. Hearn, Priyadarshini Jaishankar, Andrés Aranda-Díaz, Michelle R. Arkin, Adam R. Renslo, Peter Walter
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.46997

TLR induces reorganization of the IgM-BCR complex regulating murine B-1 cell responses to infections
Cited by: 32
Author(s): Hannah P Savage, Kathrin Kläsener, Fauna Leah Smith, Zheng Luo, Michael Reth, Nicole Baumgarth
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.59770

Alpha-satellite RNA transcripts are repressed by centromere–nucleolus associations
Cited by: 43
Author(s): Leah Bury, Brittania Moodie, Jimmy Ly, Liliana S. McKay, Karen H. Miga, Iain M. Cheeseman
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.67926

Role of BRCA2 DNA-binding and C-terminal domain in its mobility and conformation in DNA repair
Cited by: 15
Author(s): Maarten W. Paul, Arshdeep Sidhu, Yongxin Liang, Sarah E van Rossum-Fikkert, Hanny Odijk, Alex N. Zelensky, Roland Kanaar, Claire Wyman
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.31037

YAP and TAZ regulate adherens junction dynamics and endothelial cell distribution during vascular development
Cited by: 168
Author(s): Filipa Neto, Alexandra Klaus-Bergmann, Yu Ting Ong, Silvanus Alt, Anne-Clémence Vion, Anna Szymborska, Joana Rita Carvalho, Irene Hollfinger, Eireen Bartels-Klein, Cláudio A. Franco, Michael Potente, Holger Gerhardt
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.25681

Elastic force restricts growth of the murine utricle
Cited by: 26
Author(s): Ksenia Gnedeva, Adrián Jacobo, Joshua D. Salvi, Aleksandra A. Petelski, A. J. Hudspeth
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.55013

Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit
Cited by: 25
Author(s): Brian Tenner, Michael Getz, Brian Ross, Donya Ohadi, Christopher H. Bohrer, Eric C. Greenwald, Sohum Mehta, Jie Xiao, Padmini Rangamani, Jin Zhang
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.64251

Time-resolved phosphoproteomics reveals scaffolding and catalysis-responsive patterns of SHP2-dependent signaling
Cited by: 13
Author(s): Vidyasiri Vemulapalli, Lily A. Chylek, Alison R. Erickson, Anamarija Pfeiffer, Khal-Hentz Gabriel, Jonathan R. LaRochelle, Kartik Subramanian, Ruili Cao, Kimberley Stegmaier, Morvarid Mohseni, Matthew J. LaMarche, Michael G. Acker, Peter K. Sorger, Steven P. Gygi, Stephen C. Blacklow
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.52687

Squalene emulsion-based vaccine adjuvants stimulate CD8 T cell, but not antibody responses, through a RIPK3-dependent pathway
Cited by: 39
Author(s): Eui Ho Kim, Matthew C. Woodruff, L. A. Grigoryan, Bárbara Maier, Song Hee Lee, Pratyusha Mandal, Mario Cortese, Muktha S. Natrajan, Rajesh Ravindran, Huailiang Ma, Miriam Mérad, Alexander D. Gitlin, Edward S. Mocarski, Joshy Jacob, Bali Pulendran
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.23268

Copy-number and gene dependency analysis reveals partial copy loss of wild-type SF3B1 as a novel cancer vulnerability
Cited by: 63
Author(s): Brenton R. Paolella, William J. Gibson, Laura M. Urbanski, John A. Alberta, Travis I. Zack, Pratiti Bandopadhayay, Caitlin A. Nichols, Pankaj K. Agarwalla, Meredith S. Brown, Rebecca Lamothe, Yanke Yu, Peter S. Choi, Esther A. Obeng, Dirk Heckl, Guo Wei, Belinda Wang, Aviad Tsherniak, Francisca Vázquez, Barbara A. Weir, David E. Root, Glenn S. Cowley, Sara J. Buhrlage, Charles D. Stiles, Benjamin L. Ebert, William C. Hahn, Robin Reed, Rameen Beroukhim
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.08931

Digital signaling decouples activation probability and population heterogeneity
Cited by: 58
Author(s): Ryan Kellogg, Chengzhe Tian, Tomasz Lipniacki, Stephen R. Quake, Savaş Tay
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.49683

Improving drug discovery using image-based multiparametric analysis of the epigenetic landscape
Cited by: 16
Author(s): Chen Farhy, Santosh Hariharan, Jarkko Ylanko, Luis Orozco, Fu‐Yue Zeng, Ian Pass, Fernando Ugarte, Erik Forsberg, Chun-Teng Huang, David W. Andrews, Alexey V. Terskikh
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.51539

An efficient CRISPR-based strategy to insert small and large fragments of DNA using short homology arms
Cited by: 91
Author(s): Oguz Kanca, Jonathan Zirin, Jorge García-Marqués, Shannon M. Knight, Donghui Yang‐Zhou, Gabriel Amador, Hyunglok Chung, Zhuang Zuo, Liwen Ma, Yuchun He, Wen‐Jen Lin, Ying Fang, Ming Ge, Shinya Yamamoto, Karen L. Schulze, Yanhui Hu, Allan C. Spradling, Stephanie E. Mohr, Norbert Perrimon, Hugo J. Bellen
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.38187

Body size-dependent energy storage causes Kleiber’s law scaling of the metabolic rate in planarians
Cited by: 51
Author(s): Albert Thommen, Steffen Werner, Olga Frank, Patrick Jenny, Oskar Knittelfelder, Yihui Quek, Karim Fahmy, Andrej Shevchenko, Benjamin M. Friedrich, Frank Jülicher, Jochen C. Rink
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.10851

Cohesin-interacting protein WAPL-1 regulates meiotic chromosome structure and cohesion by antagonizing specific cohesin complexes
Cited by: 59
Author(s): Oliver Crawley, Consuelo Barroso, Sarah Testori, Nuria Ferrándiz, Nicola Silva, Maikel Castellano‐Pozo, Angel Luis Jaso-Tamame, Enrique Martínez-Pérez
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.40314

Translation attenuation by minocycline enhances longevity and proteostasis in old post-stress-responsive organisms
Cited by: 40
Author(s): Gregory M. Solis, Rozina Kardakaris, Elizabeth R. Valentine, Liron Bar-Peled, Alice L Chen, Megan M. Blewett, Mark McCormick, James R. Williamson, Brian K. Kennedy, Benjamin F. Cravatt, Michael Petrascheck
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.03708

Juxtaposition of heterozygous and homozygous regions causes reciprocal crossover remodelling via interference during Arabidopsis meiosis
Cited by: 88
Author(s): Piotr A Ziolkowski, Luke E. Berchowitz, Christophe Lambing, Nataliya E. Yelina, Xiaohui Zhao, Krystyna A. Kelly, Kyuha Choi, Liliana Ziolkowska, Viviana June, Eugenio Sánchez-Morán, F. Christopher H. Franklin, Gregory P. Copenhaver, Ian Henderson
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.61432

Cytoneme delivery of Sonic Hedgehog from ligand-producing cells requires Myosin 10 and a Dispatched-BOC/CDON co-receptor complex
Cited by: 38
Author(s): Eric T. Hall, Miriam E. Dillard, Daniel P. Stewart, Yan Zhang, Ben Wagner, Rachel M. Levine, Shondra M. Pruett-Miller, April Sykes, Jamshid Temirov, Richard E. Cheney, Motomi Mori, Camenzind G. Robinson, Stacey K. Ogden
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.15550

Small molecule proteostasis regulators that reprogram the ER to reduce extracellular protein aggregation
Cited by: 174
Author(s): Lars Plate, Christina B Cooley, John J. Chen, Ryan J Paxman, Ciara M Gallagher, Franck Madoux, Joseph C. Genereux, Wesley Dobbs, Dan Garza, Timothy Spicer, Louis Scampavia, Steven J Brown, Hugh Rosen, Evan T. Powers, Peter Walter, Peter Hodder, R. Luke Wiseman, Jeffery W. Kelly
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.66440

Quantitative live-cell imaging and computational modeling shed new light on endogenous WNT/CTNNB1 signaling dynamics
Cited by: 19
Author(s): Saskia Madelon Ada de Man, G. Zwanenburg, Tanne van der Wal, Mark A. Hink, Renée van Amerongen
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.40033

FGF2-FGFR1 signaling regulates release of Leukemia-Protective exosomes from bone marrow stromal cells
Cited by: 38
Author(s): Nathalie Javidi-Sharifi, Jacqueline Martinez, Isabel English, Sunil Kumar Joshi, Renata Scopim-Ribeiro, Shelton K Viola, David K. Edwards, Anupriya Agarwal, Clàudia López, Danielle Jorgens, Jeffrey W. Tyner, Brian J. Druker, Elie Traer
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.37549

Engineering induction of singular neural rosette emergence within hPSC-derived tissues
Cited by: 70
Author(s): Gavin Knight, Brady F Lundin, Nisha Iyer, Lydia Ashton, William A. Sethares, Rebecca Willett, Randolph S. Ashton
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.57894

PTEN and DNA-PK determine sensitivity and recovery in response to WEE1 inhibition in human breast cancer
Cited by: 14
Author(s): Andrä Brunner, Aldwin Suryo Rahmanto, Henrik J. Johansson, Marcela Franco, Johanna Viiliäinen, Mohiuddin Gazi, Oliver Frings, Erik Fredlund, Charles Spruck, Janne Lehtiö, Juha Rantala, Lars‐Gunnar Larsson, Olle Sangfelt
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.12552

Sequestration of host metabolism by an intracellular pathogen
Cited by: 62
Author(s): Lena Gehre, Olivier Gorgette, Stéphanie Perrinet, Marie‐Christine Prévost, Mathieu Ducatez, Amanda M. Giebel, David E. Nelson, Steven Ball, Agathe Subtil
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.20813

Acetylated tubulin is essential for touch sensation in mice
Cited by: 74
Author(s): Shane J. Morley, Yanmei Qi, Loredana Iovino, Laura Andolfi, Da Guo, Nereo Kalebic, Laura Castaldi, Christian Tischer, Carla Portulano, Giulia Bolasco, Kalyanee Shirlekar, Claudia M Fusco, Antonino Asaro, Federica Fermani, Mayya Sundukova, Ulf Matti, Luc Reymond, Adele De Ninno, Luca Businaro, Kai Johnsson, Marco Lazzarino, Jonas Ries, Yannick Schwab, Jing Hu, Paul A. Heppenstall
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.12790

Protein flexibility is required for vesicle tethering at the Golgi
Cited by: 58
Author(s): Pak-yan Patricia Cheung, Charles Limouse, Hideo Mabuchi, Suzanne R Pfeffer
Software Mentions: 1
Published: almost 10 years ago

10.3390/toxins9010041

Above and beyond C5a Receptor Targeting by Staphylococcal Leucotoxins: Retrograde Transport of Panton–Valentine Leucocidin and γ-Hemolysin
Cited by: 2
Author(s): Gaëlle Zimmermann‐Meisse, Gilles Prévost, Emmanuel Jover
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.tranon.2021.101149

Anti-tumor effects of rigosertib in high-risk neuroblastoma
Cited by: 5
Author(s): Katarzyna Radke, Karin Hansson, Jonas Sjölund, Magdalena Wolska, Jenny Karlsson, Javanshir Esfandyari, Kristian Pietras, Kristina Aaltonen, David Gisselsson, Daniel Bexell
Software Mentions: 1
Published: over 4 years ago

10.1038/tp.2016.230

Clozapine modifies the differentiation program of human adipocytes inducing browning
Cited by: 31
Author(s): Endre Kristóf, Quang-Minh Doan-Xuan, Anitta Kinga Sárvári, Ágnes Klusóczki, Pamela Fischer‐Posovszky, Martin Wabitsch, Zsolt Bacsó, Péter Bai, Zoltán Balajthy, László Fésüs
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41398-021-01287-w

Umbilical cord blood-derived microglia-like cells to model COVID-19 exposure
Cited by: 10
Author(s): Steven D. Sheridan, Jessica M. Thanos, Rose M. De Guzman, Liam McCrea, Joy E. Horng, Ting Fu, Carl M. Sellgren, Roy H. Perlis, Andrea G. Edlow
Software Mentions: 1
Published: over 4 years ago

10.1097/TXD.0000000000001168

Tubular Cell Dropout in Preimplantation Deceased Donor Biopsies as a Predictor of Delayed Graft Function
Cited by: 5
Author(s): Zachary M. Avigan, Nikhil Singh, Judith A. Kliegel, Marlene Weiß, Gilbert Moeckel, Lloyd G. Cantley
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.00903-16

JC Polyomavirus Infection of Primary Human Renal Epithelial Cells Is Controlled by a Type I IFN-Induced Response
Cited by: 41
Author(s): Benedetta Assetta, Marco De Cecco, Bethany A. O’Hara, Walter J. Atwood
Software Mentions: 1
Published: about 9 years ago

10.1128/mBio.01453-17

Spatiotemporally Heterogeneous Population Dynamics of Gut Bacteria Inferred from Fecal Time Series Data
Cited by: 27
Author(s): Hidetoshi Inamine, Stephen P. Ellner, Peter D. Newell, Yuan Luo, Nicolas Buchon, Angela E. Douglas
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01548-19

The Cervicovaginal Microbiota-Host Interaction Modulates Chlamydia trachomatis Infection
Cited by: 87
Author(s): Vonetta L. Edwards, Steven B. Smith, Elias McComb, Jeanne Tamarelle, Bing Ma, Michael S. Humphrys, Pawel Gajer, Kathleen Gwilliam, Antje Schaefer, Samuel K. Lai, Mishka Terplan, Katrina Mark, Rebecca M. Brotman, Larry J. Forney, Patrik M. Bavoil, Jacques Ravel
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.01951-19

Type VII Secretion Substrates of Pathogenic Mycobacteria Are Processed by a Surface Protease
Cited by: 19
Author(s): Maroeska J. Burggraaf, Alexander Speer, Aniek S. Meijers, Roy Ummels, Astrid M. van der Sar, Konstantin V. Korotkov, Wilbert Bitter, Coenraad Kuijl
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.02983-20

Mycobacterium tuberculosis Toxin CpnT Is an ESX-5 Substrate and Requires Three Type VII Secretion Systems for Intracellular Secretion
Cited by: 13
Author(s): B. Izquierdo Lafuente, Roy Ummels, Coenraad Kuijl, Wilbert Bitter, Alexander Speer
Software Mentions: 1
Published: over 4 years ago

10.1128/mSphere.00078-15

Infectio: a Generic Framework for Computational Simulation of Virus Transmission between Cells
Cited by: 8
Author(s): Artur Yakimovich, Yauhen Yakimovich, Michael Schmid, Jason Mercer, Ivo F. Sbalzarini, Urs F. Greber
Software Mentions: 1
Published: over 9 years ago

10.1128/mSphere.00384-16

Drug-Free Approach To Study the Unusual Cell Cycle of Giardia intestinalis
Cited by: 25
Author(s): Kathleen Horlock-Roberts, Chase Reaume, Guillem Dayer, Christine Ouellet, Nicholas Cook, Janet Yee
Software Mentions: 1
Published: about 8 years ago

10.1128/mSphereDirect.00131-18

The Heteroaryldihydropyrimidine Bay 38-7690 Induces Hepatitis B Virus Core Protein Aggregates Associated with Promyelocytic Leukemia Nuclear Bodies in Infected Cells
Cited by: 19
Author(s): Andrew D. Huber, Jennifer J. Wolf, Dandan Liu, A.T. Gres, Jing Tang, Kelsey N. Boschert, Maritza Puray-Chavez, Dallas L. Pineda, Thomas G. Laughlin, Emily Coonrod, Qiongying Yang, Juan Ji, Karen A. Kirby, Zhengqiang Wang, Stefan G. Sarafianos
Software Mentions: 1
Published: over 7 years ago

10.1128/mSphere.00537-18

Complement Susceptibility in Relation to Genome Sequence of Recent Klebsiella pneumoniae Isolates from Thai Hospitals
Cited by: 17
Author(s): Jessica Loraine, Eva Heinz, Jessica De Sousa Almeida, Oleksandr Milevskyy, Supayang Piyawan Voravuthikunchai, Potjanee Srimanote, Pattarachai Kiratisin, Nicholas R. Thomson, Peter W. Taylor
Software Mentions: 1
Published: almost 7 years ago

10.1128/mSphere.00536-19

A Metabolic Dependency for Host Isoprenoids in the Obligate Intracellular Pathogen Rickettsia parkeri Underlies a Sensitivity to the Statin Class of Host-Targeted Therapeutics
Cited by: 8
Author(s): Vida Ahyong, Charles A. Berdan, Thomas Burke, Daniel K. Nomura, Matthew Welch
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSphere.00950-20

Novel Immune Modulators Enhance <i>Caenorhabditis elegans</i> Resistance to Multiple Pathogens
Cited by: 15
Author(s): Nicholas A. Hummell, Alexey V. Revtovich, Natalia V. Kirienko
Software Mentions: 1
Published: over 4 years ago

10.1128/mSphere.00217-21

Cold Atmospheric Plasma Promotes Killing of Staphylococcus aureus by Macrophages
Cited by: 8
Author(s): Constance Duchesne, Nadira Frescaline, Océane Blaise, Jean‐Jacques Lataillade, Sébastien Banzet, Olivier Dussurget, Antoine Rousseau
Software Mentions: 1
Published: over 4 years ago

10.1186/s13046-021-01863-4

Splicing factors control triple-negative breast cancer cell mitosis through SUN2 interaction and sororin intron retention
Cited by: 16
Author(s): Esmee Koedoot, Eline van Steijn, Marjolein Vermeer, Román González-Prieto, Alfred C.O. Vertegaal, John W.M. Martens, Sylvia E. Le Dévédec, Bob van de Water
Software Mentions: 1
Published: over 4 years ago

10.1002/jev2.12071

Human milk extracellular vesicles target nodes in interconnected signalling pathways that enhance oral epithelial barrier function and dampen immune responses
Cited by: 43
Author(s): Marijke I. Zonneveld, Martijn J. C. van Herwijnen, Marcela M. Fernandez-Gutierrez, Alberta Giovanazzi, Anne Marit de Groot, Marije Kleinjan, Toni M.M. van Capel, Alice J.A.M. Sijts, Leonie S. Taams, Johan Garssen, Esther C. de Jong, Michiel Kleerebezem, Esther N. M. Nolte‐‘t Hoen, Frank A. Redegeld, Marca H. M. Wauben
Software Mentions: 1
Published: over 4 years ago

10.1155/2012/508294

Effects of Substrate Mechanics on Contractility of Cardiomyocytes Generated from Human Pluripotent Stem Cells
Cited by: 143
Author(s): Laurie B. Hazeltine, Chelsey S. Simmons, Max R. Salick, Xiaojun Lian, Mehmet G. Badur, Wenqing Han, Stephanie M. Delgado, Toshiyuki Wakatsuki, Wendy C. Crone, Beth L. Pruitt, Sean P. Palecek
Software Mentions: 1
Published: almost 14 years ago

10.1155/2019/5191630

Towards Fine Whole-Slide Skeletal Muscle Image Segmentation through Deep Hierarchically Connected Networks
Cited by: 1
Author(s): Lei Cui, Jufu Feng, Lin Yang
Software Mentions: 1
Published: over 6 years ago

10.1155/2021/6656080

The Effect of Suppression Taurine on Relocation and Epithelial-Mesenchymal Transition in Mankind Lung Cancer Cells
Cited by: 5
Author(s): Yongyan Deng, Hongjin Li, Yujiao Tang
Software Mentions: 1
Published: over 4 years ago

10.3390/jimaging2040031

3D Clumped Cell Segmentation Using Curvature Based Seeded Watershed
Cited by: 22
Author(s): Thomas Atta-Fosu, Weihong Guo, Dana Jeter, Claudia Mieko Mizutani, Nathan Stopczynski, Rui Sousa‐Neves
Software Mentions: 1
Published: about 9 years ago

10.4049/jimmunol.1801618

SSB1/SSB2 Proteins Safeguard B Cell Development by Protecting the Genomes of B Cell Precursors
Cited by: 5
Author(s): Matthias Pfeifer, Reto Brem, Timothy P. Lippert, Bryant Boulianne, Howin Ng Ho, Mark E. Robinson, Justin Stebbing, Niklas Feldhahn
Software Mentions: 1
Published: over 6 years ago

10.1016/j.jim.2014.11.004

Integrative analysis of T cell motility from multi-channel microscopy data using TIAM
Cited by: 10
Author(s): Viveka Mayya, Willie Neiswanger, Ricardo Medina, Chris H. Wiggins, Michael L. Dustin
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.ijrobp.2020.08.037

Biophysical Characterization of the Leukemic Bone Marrow Vasculature Reveals Benefits of Neoadjuvant Low-Dose Radiation Therapy
Cited by: 6
Author(s): Jamison Brooks, Bijender Kumar, Darren Zuro, Jonathan D. Raybuck, Srideshikan Sargur Madabushi, Paresh Vishwasrao, Liliana Echavarria Parra, Marcin Kortylewski, Brian Armstrong, Jerry W. Froelich, Hui Song
Software Mentions: 1
Published: almost 5 years ago

10.1007/s11255-018-1872-3

Differences in peritoneal response after exposure to low-GDP bicarbonate/lactate-buffered dialysis solution compared to conventional dialysis solution in a uremic mouse model
Cited by: 9
Author(s): Marc Vila Cuenca, Eelco D. Keuning, Wendy Talhout, Nanne J. Paauw, Frans J. van Ittersum, Piet M. ter Wee, Robert H.J. Beelen, Marc G. Vervloet, Evelina Ferrantelli
Software Mentions: 1
Published: over 7 years ago

10.1167/iovs.61.5.10

Dopamine 2 Receptor Signaling Controls the Daily Burst in Phagocytic Activity in the Mouse Retinal Pigment Epithelium
Cited by: 19
Author(s): Varunika Goyal, Christopher DeVera, Virginie Laurent, Jana T Sellers, Micah A Chrenek, David Hicks, Kenkichi Baba, P. Michael Iuvone, Gianluca Tosini
Software Mentions: 1
Published: over 5 years ago

10.1093/infdis/jiw313

Relationship Between HIV Coinfection, Interleukin 10 Production, and<i>Mycobacterium tuberculosis</i>in Human Lymph Node Granulomas
Cited by: 24
Author(s): Collin R. Diedrich, Jennifer A O’Hern, Maximiliano G. Gutierrez, Nafiesa Allie, Patricia Papier, Graeme Meintjes, Anna K. Coussens, Helen Wainwright, Robert J. Wilkinson
Software Mentions: 1
Published: over 9 years ago

10.1007/s10545-017-0025-7

Mutations in SLC25A22: hyperprolinaemia, vacuolated fibroblasts and presentation with developmental delay
Cited by: 15
Author(s): Emma S. Reid, Williams Hj, Glenn Anderson, Malika Benatti, Kling Chong, Chela James, Louise Ocaka, GOSgene, Cheryl Hemingway, Daniel Little, R. Malcolm Brown, Alasdair Parker, Simon Holden, Emma Footitt, Shamima Rahman, Paul Gissen, Philippa B. Mills, Peter T. Clayton
Software Mentions: 1
Published: over 8 years ago

10.1038/s41388-018-0313-1

Shared and independent functions of aPKCλ and Par3 in skin tumorigenesis
Cited by: 17
Author(s): Susanne Vorhagen, Dominik Kleefisch, Oana‐Diana Persa, Annika Graband, Alexandra Schwickert, Michael Saynisch, Michael Leitges, Carien M. Niessen, Sandra Iden
Software Mentions: 1
Published: over 7 years ago

10.1038/s41388-019-0850-2

Signalling involving MET and FAK supports cell division independent of the activity of the cell cycle-regulating CDK4/6 kinases
Cited by: 23
Author(s): Chi Zhang, S. Stockwell, May Elbanna, Robin Ketteler, Jamie Freeman, Bissan Al‐Lazikani, Suzanne A. Eccles, Alexis de Haven Brandon, Florence I. Raynaud, Angela Hayes, Paul A. Clarke, Paul Workman, Sibylle Mittnacht
Software Mentions: 1
Published: over 6 years ago

10.1038/s41388-020-1187-6

Mitotic slippage is determined by p31comet and the weakening of the spindle-assembly checkpoint
Cited by: 17
Author(s): Tsun Ming Lok, Yang Wang, Wendy Kaichun Xu, Siwei Xie, Hoi Tang, Randy Y. C. Poon
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41388-020-01621-4

Inhibition of PFKFB3 induces cell death and synergistically enhances chemosensitivity in endometrial cancer
Cited by: 25
Author(s): Yu Xiao, Ling Jin, Chaolin Deng, Yalin Guan, Eleftheria Kalogera, Upasana Ray, Prabhu Thirusangu, Julie Staub, Sayantani Sarkar Bhattacharya, Haotian Xu, Xiaoling Fang, Viji Shridhar
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41389-021-00329-8

Dysregulated G2 phase checkpoint recovery pathway reduces DNA repair efficiency and increases chromosomal instability in a wide range of tumours
Cited by: 2
Author(s): Madushan Fernando, Pascal H.G. Duijf, Martina Proctor, Alexander J. Stevenson, Anna Ehmann, Shivam Vora, Dubravka Škalamera, Mark N. Adams, Brian Gabrielli
Software Mentions: 1
Published: over 4 years ago

10.1016/j.jid.2018.04.015

Fractional Sunburn Threshold UVR Doses Generate Equivalent Vitamin D and DNA Damage in Skin Types I–VI but with Epidermal DNA Damage Gradient Correlated to Skin Darkness
Cited by: 43
Author(s): Barbara Shih, Mark D. Farrar, Marcus S. Cooke, Joanne E. Osman, Abigail K. Langton, Richard Kift, Ann R. Webb, Jacqueline Berry, Rachel Watson, Andy Vail, Frank R. de Gruijl, Lesley E. Rhodes
Software Mentions: 1
Published: about 7 years ago

10.1194/jlr.P075119

Identification and characterization of a novel DGAT1 missense mutation associated with congenital diarrhea
Cited by: 42
Author(s): Nina L. Gluchowski, Chandramohan Chitraju, Joseph A. Picoraro, Niklas Mejhert, Shirly Pinto, Winnie Xin, Daniel Kamin, Harland S. Winter, Wendy K. Chung, Tobias C. Walther, Robert V. Farese
Software Mentions: 1
Published: over 8 years ago

10.1194/jlr.D085217

High-throughput, nonperturbing quantification of lipid droplets with digital holographic microscopy
Cited by: 14
Author(s): Vasco Campos, Benjamin Rappaz, Fabien Kuttler, Gerardo Turcatti, Olaia Naveiras
Software Mentions: 1
Published: almost 8 years ago

10.1007/s10856-018-6102-0

An important step towards a prevascularized islet macroencapsulation device—effect of micropatterned membranes on development of endothelial cell network
Cited by: 21
Author(s): Katarzyna Skrzypek, Milou Groot Nibbelink, Lisanne Karbaat, Marcel Karperien, Aart van Apeldoorn, Dimitrios Stamatialis
Software Mentions: 1
Published: over 7 years ago

10.1007/s10856-018-6178-6

An important step towards a prevascularized islet microencapsulation device: in vivo prevascularization by combination of mesenchymal stem cells on micropatterned membranes
Cited by: 10
Author(s): Milou Groot Nibbelink, Katarzyna Skrzypek, Lisanne Karbaat, Sanne K. Both, Jacqueline R. M. Plass, Bettie Klomphaar, Jéré van Lente, Sieger Henke, Marcel Karperien, Dimitrios Stamatialis, Aart van Apeldoorn
Software Mentions: 1
Published: about 7 years ago

10.1111/jmi.12178

Pipeline for illumination correction of images for high‐throughput microscopy
Cited by: 84
Author(s): Shantanu Singh, Mark-Anthony Bray, Thouis R. Jones, Anne E. Carpenter
Software Mentions: 1
Published: about 11 years ago

10.1111/jmi.12700

Automated detection of fluorescent cells in in-resin fluorescence sections for integrated light and electron microscopy
Cited by: 14
Author(s): José Delpiano, Luis Pizarro, Christopher J. Peddie, Martin L. Jones, Lewis D. Griffin, Lucy M. Collinson
Software Mentions: 1
Published: over 7 years ago

10.1111/jmi.12853

Application of automated electron microscopy imaging and machine learning to characterise and quantify nanoparticle dispersion in aqueous media
Cited by: 20
Author(s): Martha Ilett, John W. Wills, Paul Rees, Sandeep Sharma, Stuart Micklethwaite, Andy Brown, Rik Brydson, Nicole Hondow
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.41460

Genome-wide interrogation of extracellular vesicle biology using barcoded miRNAs
Cited by: 22
Author(s): Albert Lu, Paulina S. Wawro, David W. Morgens, Fernando Gutiérrez Pórtela, Michael C. Bassik, Suzanne R Pfeffer
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.57297

Eater cooperates with Multiplexin to drive the formation of hematopoietic compartments
Cited by: 9
Author(s): Gábor Csordás, Ferdi Grawe, Mirka Uhlířová
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.30510

Automated cell-type classification in intact tissues by single-cell molecular profiling
Cited by: 91
Author(s): Monica Nagendran, Daniel P. Riordan, Pehr B. Harbury, Tushar J. Desai
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.06029

The Rab6-regulated KIF1C kinesin motor domain contributes to Golgi organization
Cited by: 50
Author(s): Peter L. Lee, Maikke B. Ohlson, Suzanne R Pfeffer
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.60917

A prion accelerates proliferation at the expense of lifespan
Cited by: 10
Author(s): David M Garcia, E. Campbell, Christopher M. Jakobson, Mitsuhiro Tsuchiya, Ethan A Shaw, Acadia DiNardo, Matt Kaeberlein, Daniel F. Jarosz
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.07068

Phosphodiesterase 4D acts downstream of Neuropilin to control Hedgehog signal transduction and the growth of medulloblastoma
Cited by: 33
Author(s): Xuecai Ge, Ljiljana Milenković, Kaye Suyama, Tom A. Hartl, Teresa Purzner, Amy Winans, Tobias Meyer, Matthew P. Scott
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.37963

SLC6A14, an amino acid transporter, modifies the primary CF defect in fluid secretion
Cited by: 23
Author(s): Saumel Ahmadi, Sunny Xia, Yu‐Sheng Wu, Michelle Di Paola, Randolph Kissoon, Catherine Luk, Lin Fan, Kai Du, Johanna M. Rommens, Christine E. Bear
Software Mentions: 1
Published: over 7 years ago

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