Ecosyste.ms: Papers

10.1371/journal.pone.0196529

A murine glaucoma model induced by rapid in vivo photopolymerization of hyaluronic acid glycidyl methacrylate
Cited by: 20
Author(s): Chin-Lin Guo, Xin Qu, Nalini Rangaswamy, Barrett Leehy, Chuanxi Xiang, Dennis S. Rice, Ganesh Prasanna
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0057142

WormSizer: High-throughput Analysis of Nematode Size and Shape
Cited by: 103
Author(s): Brad T. Moore, James M. Jordan, L. Ryan Baugh
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0009955

A Quantitative Image Cytometry Technique for Time Series or Population Analyses of Signaling Networks
Cited by: 28
Author(s): Yu Ichi Ozaki, Shinsuke Uda, Takeshi Saito, Jaehoon Chung, Hiroyuki Konishi, Shinya Kuroda
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0096426

Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis
Cited by: 68
Author(s): Ville Härmä, Hannu-Pekka Schukov, Antti P. Happonen, Ilmari Ahonen, Johannes Virtanen, Harri Siitari, Malin Åkerfelt, Jyrki Lötjönen, Matthias Nees
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0077053

A High-Content Small Molecule Screen Identifies Sensitivity of Glioblastoma Stem Cells to Inhibition of Polo-Like Kinase 1
Cited by: 53
Author(s): Davide Danovi, Amos Folarin, Sabine Gogolok, Christine Ender, Ahmed M.O. Elbatsh, Pär G. Engström, Stefan H. Stricker, Sladjana Gagrica, Ana Ruxandra Georgian, Yu Ding, Kin Pong U, Kevin J. Harvey, Patrizia Ferretti, Patrick J. Paddison, Jane E. Preston, N. Joan Abbott, Paul Bertone, Austin Smith, Steven M. Pollard
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0083882

TLR9 and RIG-I Signaling in Human Endocervical Epithelial Cells Modulates Inflammatory Responses of Macrophages and Dendritic Cells In Vitro
Cited by: 21
Author(s): Ameya Sathe, K. J. Reddy
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0190623

Conditional deletion of RB1 in the Tie2 lineage leads to aortic valve regurgitation
Cited by: 4
Author(s): Marina Freytsis, Lauren Baugh, Zhiyi Liu, Irene Georgakoudi, Philip W. Hinds, Lauren D. Black, Gordon S. Huggins
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0210706

Viable and necrotic tumor assessment from whole slide images of osteosarcoma using machine-learning and deep-learning models
Cited by: 72
Author(s): Harish Babu Arunachalam, Rashika Mishra, Ovidiu Daescu, Kevin B Cederberg, Dinesh Rakheja, Anita Sengupta, David Léonard, Rami R. Hallac, Patrick J. Leavey
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0078212

An Open Source Based High Content Screening Method for Cell Biology Laboratories Investigating Cell Spreading and Adhesion
Cited by: 5
Author(s): André Schmandke, Antonio Schmandke, Maurianne A. Pietro, Martin E. Schwab
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0101718

Functional Characterization of Friedreich Ataxia iPS-Derived Neuronal Progenitors and Their Integration in the Adult Brain
Cited by: 24
Author(s): Matthew Bird, Karina Needham, Ann E. Frazier, Jorien van Rooijen, Joseph Y.-T. Leung, Shelley R. Hough, Mark Denham, Matthew E. Thornton, Clare L. Parish, Bryony A Nayagam, Martín F. Pera, David R. Thorburn, Lachlan H. Thompson, Mirella Dottori
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0194716

A Rac1-FMNL2 signaling module affects cell-cell contact formation independent of Cdc42 and membrane protrusions
Cited by: 15
Author(s): Hanna Grobe, Andrea Wüstenhagen, Christian Baarlink, Robert Grosse, Katharina Grikscheit
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0177921

Evidence for pleural epithelial-mesenchymal transition in murine compensatory lung growth
Cited by: 11
Author(s): Alexandra B. Ysasi, Willi L. Wagner, Cristian D. Valenzuela, Arne Kienzle, Andrew B. Servais, Robert D. Bennett, Akira Tsuda, Maximilian Ackermann, Steven J. Mentzer
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0092649

Interleukin-6 Secretion by Astrocytes Is Dynamically Regulated by PI3K-mTOR-Calcium Signaling
Cited by: 32
Author(s): Simone Codeluppi, Teresa Fernández-Zafra, Katalin Sándor, Jacob Kjell, Qingsong Liu, Mathew Abrams, Lar̀s Olson, Nathanael S. Gray, Camilla I. Svensson, Per Uhlén
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0069488

Substrate-Dependent Assembly of the Tat Translocase as Observed in Live Escherichia coli Cells
Cited by: 53
Author(s): Patrick P. Rose, Julia Fröbel, Peter L. Graumann, Matthias Müller
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0023972

Intradermal Indocyanine Green for In Vivo Fluorescence Laser Scanning Microscopy of Human Skin: A Pilot Study
Cited by: 27
Author(s): Constanze Jonak, Hans Skvara, Rainer Kunstfeld, Franz Trautinger, Johannes A. Schmid
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0041633

Local Oxidative Stress Expansion through Endothelial Cells – A Key Role for Gap Junction Intercellular Communication
Cited by: 35
Author(s): Ilan Feine, Iddo Pinkas, Yoram Salomon, Avigdor Scherz
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0082982

Comparative Analysis of Radiosensitizers for K-RAS Mutant Rectal Cancers
Cited by: 26
Author(s): Laura B. Kleiman, Angela M. Krebs, Stephen Y. Kim, Theodore S. Hong, Kevin M. Haigis
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0178547

Alcohol-dysregulated microRNAs in hepatitis B virus-related hepatocellular carcinoma
Cited by: 16
Author(s): Hao Zheng, Angela E. Zou, Maarouf A. Saad, Xiao Qi Wang, James G. Kwok, Avinaash Korrapati, Pinxue Li, Tatiana Kisseleva, Jessica Wang‐Rodriguez, Weg M. Ongkeko
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0062070

A Texture Based Pattern Recognition Approach to Distinguish Melanoma from Non-Melanoma Cells in Histopathological Tissue Microarray Sections
Cited by: 19
Author(s): Elton Rexhepaj, Margrét Agnarsdóttir, Julia Bergman, Per-Henrík Edqvist, Michael Bergqvist, Mathias Uhlén, William M. Gallagher, Emma Lundberg, Fredrik Pontén
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0213678

Media composition modulates human embryonic stem cell morphology and may influence preferential lineage differentiation potential
Cited by: 10
Author(s): Linda Harkness, Xiaoli Chen, Marianne Gillard, Peter P. Gray, Anthony M. Davies
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0109372

Septin6 and Septin7 GTP Binding Proteins Regulate AP-3- and ESCRT-Dependent Multivesicular Body Biogenesis
Cited by: 21
Author(s): Sofia Traikov, Christoph Stange, Thomas Wassmer, Perrine Paul‐Gilloteaux, Jean Salamero, Graça Raposo, Bernard Hoflack
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0184330

A microfluidic renal proximal tubule with active reabsorptive function
Cited by: 54
Author(s): Else M. Vedula, José L. Alonso, M. Amin Arnaout, Joe Charest
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0080999

Multiplex Cytological Profiling Assay to Measure Diverse Cellular States
Cited by: 200
Author(s): Sigrún M. Gústafsdóttir, Vebjorn Ljosa, Katherine L Sokolnicki, Joshua Wilson, Deepika Walpita, Melissa M. Kemp, Kathleen Petri Seiler, Hyman A. Carrel, Todd R. Golub, Stuart L. Schreiber, Paul A. Clemons, Anne E. Carpenter, Alykhan F. Shamji
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0064946

RNAi Screening in Primary Human Hepatocytes of Genes Implicated in Genome-Wide Association Studies for Roles in Type 2 Diabetes Identifies Roles for CAMK1D and CDKAL1, among Others, in Hepatic Glucose Regulation
Cited by: 17
Author(s): Steven Haney, Juan Zhao, Shiwani Tiwari, Kurt Eng, Lin T. Guey, Eric Tien
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0145081

Tools for Single-Cell Kinetic Analysis of Virus-Host Interactions
Cited by: 34
Author(s): Jay W. Warrick, Andrea C. Timm, Adam D. Swick, John Yin
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0126088

DNA Damage Signaling Is Induced in the Absence of Epstein—Barr Virus (EBV) Lytic DNA Replication and in Response to Expression of ZEBRA
Cited by: 20
Author(s): Ruth Wang’ondu, Stuart Teal, Richard Park, Lee Heston, Henri Jacques Delecluse, George Miller
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0091744

High Content Image Analysis Identifies Novel Regulators of Synaptogenesis in a High-Throughput RNAi Screen of Primary Neurons
Cited by: 38
Author(s): Thomas J.F. Nieland, David J. Logan, Jessica L. Saulnier, Daniel D. Lam, Clarence Dan Johnson, David E. Root, Anne E. Carpenter, Bernardo L. Sabatini
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0233647

Automated image analysis of stained cytospins to quantify Schwann cell purity and proliferation
Cited by: 4
Author(s): Tamara Weiss, Lorenz Semmler, Flavia Millesi, Anda Mann, Maximilian Haertinger, Manuel Salzmann, Christine Radtke
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0132186

Protection by the NO-Donor SNAP and BNP against Hypoxia/Reoxygenation in Rat Engineered Heart Tissue
Cited by: 6
Author(s): Anikó Görbe, Alexandra Eder, Zoltán V. Varga, János Pálóczi, Arne Hansen, Péter Ferdinándy, Thomas Eschenhagen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0131370

Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects
Cited by: 32
Author(s): Shantanu Singh, Xiaoyun Wu, Vebjorn Ljosa, Mark‐Anthony Bray, Federica Piccioni, David E. Root, John G. Doench, Jesse S. Boehm, Anne E. Carpenter
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0108777

An Image-Based Genetic Assay Identifies Genes in T1D Susceptibility Loci Controlling Cellular Antiviral Immunity in Mouse
Cited by: 6
Author(s): Juan Liao, Humberto Jijon, Ira R. Kim, Gautam Goel, Aivi Doan, Harry Sokol, Hermann Bauer, Bernhard G. Herrmann, Kara G. Lassen, Ramnik J. Xavier
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0121653

The Effects of 1α, 25-dihydroxyvitamin D3 and Transforming Growth Factor-β3 on Bone Development in an Ex Vivo Organotypic Culture System of Embryonic Chick Femora
Cited by: 10
Author(s): Emma L. Smith, Hassan Rashidi, Janos M. Kanczler, Kevin M. Shakesheff, Richard O.C. Oreffo
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0035157

Protein Signature of Lung Cancer Tissues
Cited by: 79
Author(s): Michael R. Mehan, Deborah Ayers, Derek Thirstrup, Wei Xiong, Rachel Ostroff, Edward N. Brody, Jeffrey J. Walker, Larry Gold, Thale C. Jarvis, Nebojša Janjić, Geoffrey S. Baird, Sheri K. Wilcox
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0161466

Controlling Growth and Osteogenic Differentiation of Osteoblasts on Microgrooved Polystyrene Surfaces
Cited by: 30
Author(s): Lingyun Sun, Daniel de Melo Pereira, Qibao Wang, David Barata, Roman Truckenmüller, Zhaoyuan Li, Xin Xu, Pamela Habibović
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0013111

Xenopus Egg Extracts Increase Dynamics of Histone H1 on Sperm Chromatin
Cited by: 5
Author(s): Benjamin Freedman, Kelly E. Miller, Rebecca Heald
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0055242

Effect of Gum Arabic on Oxidative Stress and Inflammation in Adenine–Induced Chronic Renal Failure in Rats
Cited by: 108
Author(s): Badreldin H. Ali, Isehaq Al-Husseni, Sumyia Beegam, Ahmed Al-Shukaili, Abderrahim Nemmar, Simone Schierling, Nina Queisser, Nicole Schupp
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0223110

Interocular symmetry, intraobserver repeatability, and interobserver reliability of cone density measurements in the 13-lined ground squirrel
Cited by: 2
Author(s): Benjamin S. Sajdak, Alexander E Salmon, Rachel E Linderman, Jenna Cava, Heather Heitkotter, Joseph Carroll
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0226757

Autofluorescence spectroscopy in redox monitoring across cell confluencies
Cited by: 12
Author(s): Derrick Yong, Ahmad Amirul Abdul Rahim, Chaw Su Thwin, Sixun Chen, Weichao Zhai, May Win Naing
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0134714

SPARC Controls Melanoma Cell Plasticity through Rac1
Cited by: 14
Author(s): Edgardo Salvatierra, Mariano J. Alvarez, Claudia C. Leishman, Elvia Rivas Baquero, Viviana P. Lutzky, Eduardo Chuluyan, Osvaldo L. Podhajcer
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0236397

A high-throughput imaging and quantification pipeline for the EVOS imaging platform
Cited by: 4
Author(s): Stefan D. Klimaj, Yamhilette Licon-Munoz, Katelyn Del Toro, William C. Hines
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0028694

Multi-Parametric Analysis and Modeling of Relationships between Mitochondrial Morphology and Apoptosis
Cited by: 44
Author(s): Y. Reis, Martí Bernardo-Faura, Daniela Richter, Thomas Wolf, Benedikt Brors, Anne Hamacher-Brady, Roland Eils, Nathan R. Brady
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0007339

An Intermittent Live Cell Imaging Screen for siRNA Enhancers and Suppressors of a Kinesin-5 Inhibitor
Cited by: 22
Author(s): Melody Tsui, Tiao Xie, James D. Orth, Anne E. Carpenter, Stewart Rudnicki, Suejong Kim, Caroline E. Shamu, Timothy J. Mitchison
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0006822

Image-Based Assessment of Growth and Signaling Changes in Cancer Cells Mediated by Direct Cell-Cell Contact
Cited by: 7
Author(s): Peter LaPan, Jing Zhang, Andrew Hill, Ying Zhang, Robert J. Martinez, Steven Haney
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0198262

Enterobacter cloacae administration induces hepatic damage and subcutaneous fat accumulation in high-fat diet fed mice
Cited by: 19
Author(s): Anniina Keskitalo, Eveliina Munukka, Raine Toivonen, Maija Hollmén, Heikki Kainulainen, Pentti Huovinen, Sirpa Jalkanen, Satu Pekkala
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0006946

Synthetic Morphology Using Alternative Inputs
Cited by: 11
Author(s): Hiromasa Tanaka, Tongxun Yi
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0213452

Emergent heterogeneity in putative mesenchymal stem cell colonies: Single-cell time lapsed analysis
Cited by: 24
Author(s): Deena A. Rennerfeldt, Joana S. Raminhos, Samantha M Leff, Pristinavae Manning, Krystyn J. Van Vliet
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0141300

Morphological Heterogeneity and Attachment of Phaeobacter inhibens
Cited by: 23
Author(s): Einat Segev, Adèle Tellez, Hera Vlamakis, Roberto Kolter
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0203956

SYBR Gold dye enables preferential labelling of mitochondrial nucleoids and their time-lapse imaging by structured illumination microscopy
Cited by: 17
Author(s): Visnja Jevtic, Petra Kindle, Sergiy V. Avilov
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0048943

Lentiviral Transduction of CD34+ Cells Induces Genome-Wide Epigenetic Modifications
Cited by: 20
Author(s): Yuriko Yamagata, Véronique Parietti, Daniel Stockholm, Guillaume Corre, Catherine Poinsignon, Nizar Touleimat, Damien Delafoy, Céline Besse, Jörg Tost, Anne Galy, Andràs Páldi
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0065196

Cell-Autonomous Defects in Thymic Epithelial Cells Disrupt Endothelial-Perivascular Cell Interactions in the Mouse Thymus
Cited by: 26
Author(s): Jerrod L. Bryson, Ann V. Griffith, Bernard M. Hughes, Fumi Saito, Yousuke Takahama, Ellen R. Richie, Nancy R. Manley
Software Mentions: 1
Published: over 11 years ago

10.3390/cancers13143604

PFKFB3 Inhibition Sensitizes DNA Crosslinking Chemotherapies by Suppressing Fanconi Anemia Repair
Cited by: 5
Author(s): Anna Huguet Ninou, Jemina Lehto, Dimitrios Chioureas, Hannah Stigsdotter, Korbinian Schelzig, Emma Åkerlund, Greta Gudoitytė, Ulrika Joneborg, Joseph W. Carlson, Jos Jonkers, Brinton Seashore‐Ludlow, Nina Gustafsson
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers12051065

Nelfinavir Inhibits the TCF11/Nrf1-Mediated Proteasome Recovery Pathway in Multiple Myeloma
Cited by: 23
Author(s): Dominika Fassmannová, František Sedlák, J Sedláček, Ivan Špıčka, Klára Grantz Šašková
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12082138

Extracellular Vesicle Transfer from Endothelial Cells Drives VE-Cadherin Expression in Breast Cancer Cells, Thereby Causing Heterotypic Cell Contacts
Cited by: 17
Author(s): Maryam Rezaei, Ana M. Cavaco, Martin Stehling, Astrid F. Nottebaum, Katrin Brockhaus, Michele F. Caliandro, Sonja Schelhaas, Felix Schmalbein, Dietmar Vestweber, Johannes A. Eble
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12082247

A Multi-Analyte Approach for Improved Sensitivity of Liquid Biopsies in Prostate Cancer
Cited by: 15
Author(s): Lilli Hofmann, Katja Sallinger, Christoph Haudum, Maria Anna Smolle, Ellen Heitzer, Tina Moser, Michael Novy, Kevin Gesson, Thomas Kroneis, Thomas Bauernhofer, Amin El‐Heliebi
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers11030361

Examination of Independent Prognostic Power of Gene Expressions and Histopathological Imaging Features in Cancer
Cited by: 15
Author(s): Tingyan Zhong, Mengyun Wu, Shuangge Ma
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers12092449

Deciphering the Immune Microenvironment on A Single Archival Formalin-Fixed Paraffin-Embedded Tissue Section by An Immediately Implementable Multiplex Fluorescence Immunostaining Protocol
Cited by: 17
Author(s): Adrien Guillot, Marlene Kohlhepp, Alix Bruneau, Felix Heymann, Frank Tacke
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers13133308

DeepRePath: Identifying the Prognostic Features of Early-Stage Lung Adenocarcinoma Using Multi-Scale Pathology Images and Deep Convolutional Neural Networks
Cited by: 18
Author(s): Won Sang Shim, Kwangil Yim, Taejung Kim, Yeoun Eun Sung, Gyeongyun Lee, Ji Hyung Hong, Sang Hoon Chun, Seoree Kim, Ho Jung An, Sae Jung Na, Jae Jun Kim, Myung Sang Moon, Seok Whan Moon, Sung Soo Park, Soon Auck Hong, Yoon Ho Ko
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers11122012

Breast-Associated Adipocytes Secretome Induce Fatty Acid Uptake and Invasiveness in Breast Cancer Cells via CD36 Independently of Body Mass Index, Menopausal Status and Mammary Density
Cited by: 30
Author(s): Maurice Zaoui, Mehdi Morel, Nathalie Ferrand, Soraya Fellahi, Jean‐Philippe Bastard, Antonin Lamazière, Annette K. Larsen, Véronique Béréziat, Michaël Atlan, Michèle Sabbah
Software Mentions: 1
Published: almost 5 years ago

10.3390/cancers13061442

Targeting CX3CR1 Suppresses the Fanconi Anemia DNA Repair Pathway and Synergizes with Platinum
Cited by: 4
Author(s): Jemina Lehto, Anna Huguet Ninou, Dimitrios Chioureas, Jos Jonkers, Nina Gustafsson
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers12082114

Oncogenic Serine 45-Deleted β-Catenin Remains Susceptible to Wnt Stimulation and APC Regulation in Human Colonocytes
Cited by: 6
Author(s): Taybor W. Parker, Aaron J. Rudeen, Kristi L. Neufeld
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12061352

Liquid Biopsy Serial Monitoring of Treatment Responses and Relapse in Advanced Esophageal Squamous Cell Carcinoma
Cited by: 11
Author(s): Josephine Mun Yee Ko, Hoi Yan Ng, Ka On Lam, K.W. Chiu, Dora Lai Wan Kwong, Anthony W.I. Lo, John Wong, Roger Lin, Henry Chun Hung Fong, Jason Ying Ki Li, Wei Dai, Simon Law, Maria Li Lung
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12113288

In Situ Detection of Complex DNA Damage Using Microscopy: A Rough Road Ahead
Cited by: 12
Author(s): Zacharenia Nikitaki, Eloïse Pariset, Damir Sudar, Sylvain V. Costes, Alexandros G. Georgakilas
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers12040877

Prognostic Impact of Tumor-Associated Macrophages on Survival Is Checkpoint Dependent in Classical Hodgkin Lymphoma
Cited by: 25
Author(s): Kristiina Karihtala, Suvi‐Katri Leivonen, Oscar Brück, Marja‐Liisa Karjalainen‐Lindsberg, Satu Mustjoki, Teijo Pellinen, Sirpa Leppä
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12061427

The Recombinant Fragment of Human κ-Casein Induces Cell Death by Targeting the Proteins of Mitochondrial Import in Breast Cancer Cells
Cited by: 8
Author(s): M. Richter, Fabian Wohlfromm, Thilo Kähne, Hannes Bongartz, Kamil Seyrek, Yu. Ya. Kit, Olga Chinak, Vladimír Richter, Olga Koval, Inna N. Lavrik
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers11040579

Histopathological Imaging–Environment Interactions in Cancer Modeling
Cited by: 8
Author(s): Yaqing Xu, Tingyan Zhong, Mengyun Wu, Shuangge Ma
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13184651

Elevating CDCA3 Levels Enhances Tyrosine Kinase Inhibitor Sensitivity in TKI-Resistant EGFR Mutant Non-Small-Cell Lung Cancer
Cited by: 4
Author(s): Katherine B. Sahin, Esha Shah, Genevieve P. Ferguson, Christopher J. Molloy, Priyakshi Kalita-de Croft, Sarah A. Hayes, Amanda L. Hudson, Emily K. Colvin, Hannah Kamitakahara, Rozelle Harvie, Csilla Hasovits, Tashbib Khan, Pascal H.G. Duijf, Viive M. Howell, Yaowu He, Emma Bolderson, John D. Hooper, Sunil R. Lakhani, Derek J. Richard, Kenneth J. O’Byrne, Mark N. Adams
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers11121985

Crosstalk between SHH and FGFR Signaling Pathways Controls Tissue Invasion in Medulloblastoma
Cited by: 11
Author(s): Anuja Neve, Jessica Migliavacca, Charles Capdeville, Marc Thomas Schönholzer, Alexandre Gries, Min Ma, Karthiga Santhana Kumar, Michael A. Grotzer, Martin Baumgärtner
Software Mentions: 1
Published: almost 5 years ago

10.3390/cancers10090313

Non-Invasive Assessment of Lactate Production and Compartmentalization in Renal Cell Carcinomas Using Hyperpolarized 13C Pyruvate MRI
Cited by: 19
Author(s): Renuka Sriram, Jeremy W. Gordon, Céline Baligand, Fayyaz Ahamed, Justin Delos Santos, Hecong Qin, Robert Bok, Daniel B. Vigneron, John Kurhanewicz, Peder E. Z. Larson, Zhen J. Wang
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cell.2020.12.027

Compromised SARS-CoV-2-specific placental antibody transfer
Cited by: 154
Author(s): Caroline Atyeo, Krista M. Pullen, Evan A. Bordt, Stephanie Fischinger, John S. Burke, Ashlin Michell, Matthew D. Slein, Carolin Loos, Lydia L. Shook, Adeline A. Boatin, Laura J. Yockey, David Pépin, Marie Charlotte Meinsohn, Ngoc Minh Nguyen, Maëva Chauvin, Drucilla J. Roberts, Ilona T. Goldfarb, Juan D. Matute, Kaitlyn James, Lael M. Yonker, Lisa M. Bebell, Anjali J Kaimal, Kathryn J. Gray, Douglas A. Lauffenburger, Andrea G. Edlow, Galit Alter
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.cell.2011.11.064

Local Translation of Extranuclear Lamin B Promotes Axon Maintenance
Cited by: 227
Author(s): Byung Chul Yoon, Hosung Jung, Asha Dwivedy, Catherine M. O'Hare, Krishna H. Zivraj, Christine E. Holt
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.cell.2015.08.069

Lack of Neuronal IFN-β-IFNAR Causes Lewy Body- and Parkinson’s Disease-like Dementia
Cited by: 145
Author(s): Patrick Ejlerskov, Jeanette Göransdotter Hultberg, Jun-Yang Wang, Robert Carlsson, Malene Ambjørn, Martin Kuss, Yawei Liu, Giovanna Porcu, Kateryna Kolkova, Carsten Friis Rundsten, Karsten Ruscher, Bente Pakkenberg, Tobias Goldmann, Desirée Loreth, Marco Prinz, David C. Rubinsztein, Shohreh Issazadeh‐Navikas
Software Mentions: 1
Published: about 9 years ago

10.1186/s12964-015-0083-0

TNF-α and IGF1 modify the microRNA signature in skeletal muscle cell differentiation
Cited by: 36
Author(s): Swanhild U. Meyer, Christian Thirion, Anna Polesskaya, Stefan Bauersachs, Sebastian Kaiser, Sabine Krause, Michael W. Pfaffl
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12964-020-00583-0

Heat shock response regulates stimulus-specificity and sensitivity of the pro-inflammatory NF-κB signalling
Cited by: 10
Author(s): Anna Paszek, Małgorzata Kardyńska, James Bagnall, Jarosław Śmieja, David G. Spiller, Piotr Widłak, Marek Kimmel, Wiesława Widłak, Pawel Paszek
Software Mentions: 1
Published: over 4 years ago

10.1186/s12964-018-0264-8

Chemotherapy induced PRL3 expression promotes cancer growth via plasma membrane remodeling and specific alterations of caveolae-associated signaling
Cited by: 7
Author(s): Bálint Csoboz, Imre Gombos, Erika Tátrai, József Tóvári, Anna L. Kiss, Ibolya Horváth, László Vı́gh
Software Mentions: 1
Published: about 6 years ago

10.1186/s12964-020-00550-9

A cancer stem cell-like phenotype is associated with miR-10b expression in aggressive squamous cell carcinomas
Cited by: 19
Author(s): Monika Wimmer, Roland Zauner, Michael Ablinger, Josefina Piñón-Hofbauer, Christina Guttmann‐Gruber, Manuela Reisenberger, Thomas Lettner, Norbert Niklas, Johannes Proell, Mila Sajinovic, Paul de Souza, Stefan Hainzl, Thomas Köcher, Eva M. Murauer, Johann Bauer, Dirk Strunk, Julia Reichelt, Albert S. Mellick, Verena Wally
Software Mentions: 1
Published: over 4 years ago

10.1186/s12964-018-0284-4

Macrophage migration inhibitory factor contributes to the pathogenesis of benign lymphoepithelial lesion of the lacrimal gland
Cited by: 4
Author(s): Yao Mawulikplimi Adzavon, Pengxiang Zhao, Jianmin Ma, Xujuan Zhang, Xin Zhang, Mingzi Zhang, Mengyu Liu, Limin Wang, Danying Chen, Tarekegn Gebreyesus Abisso, Baobei Lv, Lei Wang, Fei Xie, Xuemei Ma
Software Mentions: 1
Published: about 6 years ago

10.1038/s41418-019-0397-3

JMJD6 modulates DNA damage response through downregulating H4K16ac independently of its enzymatic activity
Cited by: 13
Author(s): Dawei Huo, Hao Chen, Yiming Cheng, Xin Song, Kai Zhang, Dariusz Plewczynski, Chenghao Xuan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-2560-7

LGR5+ epithelial tumor stem-like cells generate a 3D-organoid model for ameloblastoma
Cited by: 13
Author(s): Ting Han Chang, Rabie M. Shanti, Yuanxin Liang, Jincheng Zeng, Shihong Shi, Faizan Alawi, Lee Carrasco, Qunzhou Zhang, Anh D. Le
Software Mentions: 1
Published: over 4 years ago

10.1038/s41419-021-03513-1

Inhibition of HECT E3 ligases as potential therapy for COVID-19
Cited by: 27
Author(s): Giuseppe Novelli, Jing Liu, Michela Biancolella, Tonino Alonzi, Antonio Novelli, J.J. Patten, Dario Cocciadiferro, Emanuele Agolini, Vito Luigi Colona, Barbara Rizzacasa, Rosalinda Giannini, Benedetta Bigio, Delia Goletti, Maria Rosaria Capobianchi, Sandro Grelli, Justin David Mann, Trevor D. McKee, Ke Cheng, Fatima Amanat, Florian Krammer, Andrea Guarracino, Gerardo Pepe, Carlo Tomino, Yacine Tandjaoui-Lambiotte, Y. Uzunhan, Sarah Tubiana, Jade Ghosn, Luigi D. Notarangelo, Helen C. Su, Laurent Abel, Aurélie Cobat, Gai Elhanan, Joseph J. Grzymski, Andrea Latini, Sachdev S. Sidhu, Suresh Jain, Robert A. Davey, Jean‐Laurent Casanova, Wenyi Wei, Pier Paolo Pandolfi
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-020-03159-5

Raloxifene prevents stress granule dissolution, impairs translational control and promotes cell death during hypoxia in glioblastoma cells
Cited by: 14
Author(s): Kathleen M. Attwood, Aaron Robichaud, Lauren P. Westhaver, Elizabeth L. Castle, David M. Brandman, Aruna D. Balgi, Michel Roberge, Patricia Colp, Sidney Croul, Inhwa Kim, Craig McCormick, Jennifer A. Corcoran, Adrienne Weeks
Software Mentions: 1
Published: about 4 years ago

10.1038/cddis.2014.579

Interaction of differentiated human adipocytes with macrophages leads to trogocytosis and selective IL-6 secretion
Cited by: 44
Author(s): Anitta Kinga Sárvári, Quang-Minh Doan-Xuan, Zsolt Bacsó, István Csomós, Zoltán Balajthy, László Fésüs
Software Mentions: 1
Published: almost 10 years ago

10.1038/cddis.2015.66

NF-κB inhibition reveals a novel role for HGF during skeletal muscle repair
Cited by: 37
Author(s): Jonathan D. Proto, Ying Tang, Aiping Lü, W. C W Chen, Elizabeth C. Stahl, Minakshi Poddar, Sarah Beckman, Paul D. Robbins, L. J. Nidernhofer, Kayla Imbrogno, Timothy Hannigan, Wendy M. Mars, B. Wang, Johnny Huard
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-019-1307-9

sPIF promotes myoblast differentiation and utrophin expression while inhibiting fibrosis in Duchenne muscular dystrophy via the H19/miR-675/let-7 and miR-21 pathways
Cited by: 28
Author(s): Daria Morgoulis, Peter Berenstein, Simona Cazacu, Gila Kazimirsky, Amir Dori, Eytan R. Barnea, Chaya Brodie
Software Mentions: 1
Published: almost 6 years ago

10.1038/cddis.2017.214

Dicer and microRNAs protect adult dopamine neurons
Cited by: 75
Author(s): Piotr Chmielarz, Julia Konovalova, Syeda Sadia Najam, Heike Alter, Petteri Piepponen, Holger Erfle, Kai‐Christian Sonntag, Günther Schütz, Ilya A. Vinnikov, Andrii Domanskyi
Software Mentions: 1
Published: over 7 years ago

10.1038/cddis.2016.141

Myt3 suppression sensitizes islet cells to high glucose-induced cell death via Bim induction
Cited by: 5
Author(s): Bryan Tennant, Ben Vanderkruk, Jaspreet Dhillon, Derek L. Dai, C. Bruce Verchere, Brad G. Hoffman
Software Mentions: 1
Published: over 8 years ago

10.1038/cddiscovery.2016.77

Global histone modification fingerprinting in human cells using epigenetic reverse phase protein array
Cited by: 12
Author(s): Marina Partolina, Hazel C. Thoms, Kenneth G. MacLeod, Giovanny Rodriguez Blanco, Matthew N. Clarke, Anuroop Venkateswaran Venkatasubramani, Rima Beesoo, Vladimir Larionov, Vidushi S. Neergheen-Bhujun, Bryan Serrels, Hiroshi Kimurâ, Neil O. Carragher, Alexander Kagansky
Software Mentions: 1
Published: over 7 years ago

10.1038/s41420-020-00342-7

MEKK3-MEK5-ERK5 signaling promotes mitochondrial degradation
Cited by: 4
Author(s): Jane E. Craig, Joseph N. Miller, Raju R. Rayavarapu, Zhenya Hong, Gamze B. Bulut, Wei Zhuang, Sadie Miki Sakurada, Jamshid Temirov, Jonathan Low, Taosheng Chen, Shondra M. Pruett-Miller, Lily Huang, Malia B. Potts
Software Mentions: 1
Published: about 4 years ago

10.1186/s13008-018-0039-z

Measuring DNA content in live cells by fluorescence microscopy
Cited by: 28
Author(s): Cecil J. Gomes, Michael W. Harman, Sara Centuori, Charles W. Wolgemuth, Jesse D. Martinez
Software Mentions: 1
Published: about 6 years ago

10.1016/j.cmet.2011.06.017

Pyruvate Kinase Triggers a Metabolic Feedback Loop that Controls Redox Metabolism in Respiring Cells
Cited by: 185
Author(s): Nana‐Maria Grüning, Mark Rinnerthaler, Katharina Bluemlein, Michael Mülleder, Mirjam M. C. Wamelink, Hans Lehrach, Cornelis Jakobs, Michael Breitenbach, Markus Ralser
Software Mentions: 1
Published: about 13 years ago

10.1007/s12195-018-0542-y

Systems Modeling Identifies Divergent Receptor Tyrosine Kinase Reprogramming to MAPK Pathway Inhibition
Cited by: 9
Author(s): Allison Claas, Lyla Atta, Simon Gordonov, Aaron S. Meyer, Douglas A. Lauffenburger
Software Mentions: 1
Published: over 6 years ago

10.1007/s00018-019-03010-x

A disease causing ATLASTIN 3 mutation affects multiple endoplasmic reticulum-related pathways
Cited by: 32
Author(s): Laura Behrendt, Ingo Kurth, Christoph Kaether
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00018-018-2989-3

Increases in cytosolic Ca2+ induce dynamin- and calcineurin-dependent internalisation of CFTR
Cited by: 12
Author(s): Waseema Patel, P. Hutton Moore, Maria F. Sassano, Miquéias Lopes‐Pacheco, A. N. Aleksandrov, Margarida D. Amaral, Robert Tarran, Michael A. Gray
Software Mentions: 1
Published: almost 6 years ago

10.1111/cpr.13013

Dermal papilla cells and melanocytes response to physiological oxygen levels depends on their interactions
Cited by: 7
Author(s): Carla M. Abreu, Rui L. Reis, A. P. Marques
Software Mentions: 1
Published: over 3 years ago

10.1016/j.celrep.2015.08.066

APOBEC3B-Mediated Cytidine Deamination Is Required for Estrogen Receptor Action in Breast Cancer
Cited by: 91
Author(s): Manikandan Periyasamy, Hetal Patel, Chun‐Fui Lai, Van Nguyen, Ekaterina Nevedomskaya, Alison Harrod, Roslin Russell, Judit Reményi, Anna Maria Ochocka, Ross S Thomas, Frances V. Fuller-Pace, Balázs Győrffy, Carlos Caldas, Naveenan Navaratnam, Jason S. Carroll, Wilbert Zwart, R. Charles Coombes, Luca Magnani, Laki Buluwela, Simak Ali
Software Mentions: 1
Published: about 9 years ago

10.1016/j.celrep.2019.05.002

Human RIF1-Protein Phosphatase 1 Prevents Degradation and Breakage of Nascent DNA on Replication Stalling
Cited by: 52
Author(s): Javier Garzón, Sebastian Ursich, Massimo Lopes, Shin‐ichiro Hiraga, Anne Donaldson
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2018.11.064

IP3 Receptors Preferentially Associate with ER-Lysosome Contact Sites and Selectively Deliver Ca2+ to Lysosomes
Cited by: 116
Author(s): Peace Atakpa, Nagendra Babu Thillaiappan, Stefania Mataragka, David L. Prole, Colin W. Taylor
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.celrep.2019.11.001

Group A Streptococcal S Protein Utilizes Red Blood Cells as Immune Camouflage and Is a Critical Determinant for Immune Evasion
Cited by: 16
Author(s): Igor H. Wierzbicki, Anaamika Campeau, Diana Dehaini, Maya Holay, Xiaoli Wei, Trever T Greene, Man Ying, Jenna S. Sands, Anne Lamsa, Elina I. Zúñiga, Kit Pogliano, Ronnie H. Fang, Christopher N. LaRock, Liangfang Zhang, David J. Gonzalez
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.celrep.2019.12.076

Follicular Regulatory T Cells Can Access the Germinal Center Independently of CXCR5
Cited by: 41
Author(s): Ine Vanderleyden, Sigrid Fra‐Bido, Silvia Innocentin, Marisa Stebegg, Hanneke Okkenhaug, Nicola Evans-Bailey, Wim Pierson, Alice E. Denton, Michelle A. Linterman
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.crmeth.2021.100043

Highly efficient manipulation of nervous system gene expression with NEPTUNE
Cited by: 4
Author(s): Katrin Mangold, J. Mašek, Jiehua He, Urban Lendahl, Elaine Fuchs, Emma R. Andersson
Software Mentions: 1
Published: over 3 years ago

10.1016/j.cels.2018.06.006

Interdependence between EGFR and Phosphatases Spatially Established by Vesicular Dynamics Generates a Growth Factor Sensing and Responding Network
Cited by: 37
Author(s): Angel Stanoev, Amit Mhamane, Klaus C. Schuermann, Hernán E. Grecco, Wayne Stallaert, Martin Baumdick, Yannick Brüggemann, Maitreyi Sadanand Joshi, Pedro Roda-Navarro, Sven Fengler, Rabea Stockert, Lisaweta Roßmannek, Jutta Luig, Aneta Koseska, Philippe I. H. Bastiaens
Software Mentions: 1
Published: about 6 years ago