10.1371/journal.pgen.1004680

The Chromosomal Association of the Smc5/6 Complex Depends on Cohesion and Predicts the Level of Sister Chromatid Entanglement
Cited by: 58
Author(s): Kristian Jeppsson, Kristian K. Carlborg, Ryuichiro Nakato, Davide G. Berta, Ingrid Lilienthal, Takaharu Kanno, Arne Lindqvist, Maartje C. Brink, Nico P. Dantuma, Yuki Katou, Katsuhiko Shirahige, Camilla Sjögren
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1004855

Systematic Cell-Based Phenotyping of Missense Alleles Empowers Rare Variant Association Studies: A Case for LDLR and Myocardial Infarction
Cited by: 48
Author(s): Aenne S. Thormaehlen, Christian Schuberth, Hong-Hee Won, Peter Blattmann, Brigitte Joggerst-Thomalla, Susanne Theiß, Rosanna Asselta, Stefano Duga, Pier Angelica Merlini, Diego Ardissino, Eric S. Lander, Stacey Gabriel, Daniel J. Rader, Gina M. Peloso, Rainer Pepperkok, Sekar Kathiresan, Heiko Runz
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1008351

Exocyst-mediated apical Wg secretion activates signaling in the Drosophila wing epithelium
Cited by: 12
Author(s): Varun Chaudhary, Michael Boutros
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.1008162

MNM and SNM maintain but do not establish achiasmate homolog conjunction during Drosophila male meiosis
Cited by: 14
Author(s): Michael Shoujie Sun, Joe Weber, Ariane C. Blattner, Soumya Chaurasia, Christian F. Lehner
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1005684

Stable Pseudohyphal Growth in Budding Yeast Induced by Synergism between Septin Defects and Altered MAP-kinase Signaling
Cited by: 19
Author(s): Jun Won Kim, Mark D. Rose
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1000994

Drosophila Genome-Wide RNAi Screen Identifies Multiple Regulators of HIF–Dependent Transcription in Hypoxia
Cited by: 47
Author(s): Andrés Dekanty, Nuria Romero, Agustina P. Bertolin, María Gabriela Thomas, Claudia C. Leishman, Joel I. Perez-Perri, Graciela Lidia Boccaccio, Pablo Wappner
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pgen.1005759

The Polymerase Activity of Mammalian DNA Pol ζ Is Specifically Required for Cell and Embryonic Viability
Cited by: 27
Author(s): Sabine S. Lange, Junya Tomida, Karen S. Boulware, Sarita Bhetawal, Richard D. Wood
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1007541

DNA replication stress triggers rapid DNA replication fork breakage by Artemis and XPF
Cited by: 24
Author(s): Rémy Bétous, Théo Goullet de Rugy, Alessandra Luíza Pelegrini, Sophie Queillé, Jean-Pierre de Villartay, Jean-Sébastien Hoffmann
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0007890

Repurposing the antimalarial pyronaridine tetraphosphate to protect against Ebola virus infection
Cited by: 41
Author(s): Thomas R. Lane, Christopher Massey, Jason E. Comer, Manu Anantpadma, Joel S. Freundlich, Robert A. Davey, Peter B. Madrid, Sean Ekins
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0007602

TGF-β inhibitor therapy decreases fibrosis and stimulates cardiac improvement in a pre-clinical study of chronic Chagas’ heart disease
Cited by: 52
Author(s): Roberto Rodrigues Ferreira, Rayane da Silva Abreu, Gláucia Vilar-Pereira, Wim Degrave, Marcelo Meuser-Batista, Nilma Valéria Caldeira Ferreira, Otacílio C. Moreira, Natália Lins da Silva Gomes, Elen Mello de Souza, Isalira Peroba Ramos, Sabine Bailly, Jean‐Jacques Feige, Joseli Lannes-Vieira, Tânia C. Araújo-Jorge, Mariana Caldas Waghabi
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0220807

Secretome profiling of PC3/nKR cells, a novel highly migrating prostate cancer subline derived from PC3 cells
Cited by: 2
Author(s): Ju Mi Jeon, Oh Kwang Kwon, Ann-Yae Na, Eun Ji Sung, Il Je Cho, Mirae Kim, Sung Su Yea, So Young Chun, Jun Hyung Lee, Yun‐Sok Ha, Tae Gyun Kwon, Sangkyu Lee
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0128975

Automated Analysis and Classification of Histological Tissue Features by Multi-Dimensional Microscopic Molecular Profiling
Cited by: 22
Author(s): Daniel P. Riordan, Sushama Varma, Robert B. West, Patrick O. Brown
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0085896

Monitoring Repair of UV-Induced 6-4-Photoproducts with a Purified DDB2 Protein Complex
Cited by: 10
Author(s): Matija Dreze, Anne S. Calkins, Judit Gálicza, Daniel J. Echelman, Mathew R. Schnorenberg, Gillian L. Fell, Shigenori Iwai, David E. Fisher, Dávid Szűts, J. Dirk Iglehart, Jean Bernard Lazaro
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0033755

A Chemical Screen Probing the Relationship between Mitochondrial Content and Cell Size
Cited by: 52
Author(s): Toshimori Kitami, David J. Logan, Joseph Negri, Thomas Hasaka, Nicola Tolliday, Anne E. Carpenter, Bruce M. Spiegelman, Vamsi K. Mootha
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0020143

Omeprazole Inhibits Proliferation and Modulates Autophagy in Pancreatic Cancer Cells
Cited by: 90
Author(s): Andrej Udelnow, Andreas Kreyes, Stefan Ellinger, Katharina Landfester, Paul Walther, T. Klapperstueck, Johannes Wohlrab, Doris Henne‐Bruns, Uwe Knippschild, Peter Würl
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0041688

MicroRNA Regulation of the Synaptic Plasticity-Related Gene Arc
Cited by: 82
Author(s): Karin Wibrand, Balagopal Pai, Taweeporn Siripornmongcolchai, Margarethe Bittins, Birgitte Berentsen, May Lillian Ofte, A A Janet Weigel, Kai Ove Skaftnesmo, Clive R. Bramham
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0092444

ColonyArea: An ImageJ Plugin to Automatically Quantify Colony Formation in Clonogenic Assays
Cited by: 454
Author(s): Camilo Guzmán, Manish Bagga, Amanpreet Kaur, Jukka Westermarck, Daniel Abankwa
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0188817

Cytotoxicity of portoamides in human cancer cells and analysis of the molecular mechanisms of action
Cited by: 20
Author(s): Tiago Ribeiro, Filipa Lemos, Marco Preto, Joana Azevedo, Maria Lígia Sousa, Pedro N. Leão, Alexandre Campos, Stig Linder, Rui Vitorino, Vı́tor Vasconcelos, Ralph Urbatzka
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0043263

Differential Effects of Two Fermentable Carbohydrates on Central Appetite Regulation and Body Composition
Cited by: 66
Author(s): Tulika Arora, Ruey Leng Loo, Jelena Anastasovska, Glenn R. Gibson, Kieran Tuohy, Raj Kumar Sharma, Jonathan R. Swann, E. R. Deaville, Michelle Sleeth, E. Louise Thomas, Elaine Holmes, Jimmy D. Bell, Gary Frost
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0051831

Identification of Drosophila Gene Products Required for Phagocytosis of Leishmania donovani
Cited by: 19
Author(s): Adam Peltan, Laura Briggs, Gareth Matthews, Sean T. Sweeney, Deborah F. Smith
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0244135

Quantitative determination of histone methylation via fluorescence resonance energy transfer (FRET) technology in immortalized bovine mammary alveolar epithelial cells supplemented with methionine
Cited by: 3
Author(s): Fernanda Rosa, J. S. Osorio
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0054962

Lack of the Matricellular Protein SPARC (Secreted Protein, Acidic and Rich in Cysteine) Attenuates Liver Fibrogenesis in Mice
Cited by: 42
Author(s): Catalina Atorrasagasti, Estanislao Peixoto, Jorge B. Aquino, Néstor Kippes, Mariana Malvicini, Laura Alaniz, Mariana Garcı́a, Flavia Piccioni, Esteban Fiore, Juan Bayo, Ramón Bataller, Elizabeth Guruceaga, Fernando J. Corrales, Osvaldo L. Podhajcer, Guillermo Mazzolini
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0054923

A Novel Angiopoietin-2 Selective Fully Human Antibody with Potent Anti-Tumoral and Anti-Angiogenic Efficacy and Superior Side Effect Profile Compared to Pan-Angiopoietin-1/-2 Inhibitors
Cited by: 61
Author(s): Markus Thomas, Yvonne Kienast, Werner Scheuer, Monika Bähner, Klaus Kaluza, Christian Gassner, Frank Herting, Ulrich Brinkmann, Stefan Seeber, Anita Kavlie, Martin Welschof, Stefan Ries, K. Michael Weidner, Jörg T. Regula, Christian Klein
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0140236

In Vivo Zonal Variation and Liver Cell-Type Specific NF-κB Localization after Chronic Adaptation to Ethanol and following Partial Hepatectomy
Cited by: 5
Author(s): Harshavardhan Nilakantan, Lakshmi Kuttippurathu, Austin Parrish, Jan B. Hoek, Rajanikanth Vadigepalli
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0193605

Development of image analysis software for quantification of viable cells in microchips
Cited by: 8
Author(s): Maximilian Georg, Tamara Fernández‐Cabada, Natalia Bourguignon, P. Karp, Ana Peñaherrera, Gustavo Helguera, Betiana Lerner, Maximiliano Pérez, Roland Mertelsmann
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0222946

Gene expression profiling of skeletal myogenesis in human embryonic stem cells reveals a potential cascade of transcription factors regulating stages of myogenesis, including quiescent/activated satellite cell-like gene expression
Cited by: 9
Author(s): Michael Shelton, Morten Ritso, Jun Li, Daniel O’Neil, Avetik Kocharyan, Michael A. Rudnicki, William L. Stanford, Ilona S. Skerjanc, Alexandre Blais
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0189433

Angiopoietin-1 deficiency increases renal capillary rarefaction and tubulointerstitial fibrosis in mice
Cited by: 24
Author(s): Krishnapriya Loganathan, Ebtisam Salem Said, Emily Winterrowd, Martina Orebrand, Liqun He, Michael Vanlandewijck, Christer Betsholtz, Susan E. Quaggin, Marie Jeansson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0144596

Ethanol Inhibits High-Affinity Immunoglobulin E Receptor (FcεRI) Signaling in Mast Cells by Suppressing the Function of FcεRI-Cholesterol Signalosome
Cited by: 12
Author(s): Lubica Dráberová, Tomáš Paulenda, Ivana Hálová, Lucie Potůčková, Monika Bambousková, Magda Tůmová, Petr Dráber
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0055799

Integrin-Mediated Signaling Induced by Simian Virus 40 Leads to Transient Uncoupling of Cortical Actin and the Plasma Membrane
Cited by: 23
Author(s): Lilli Stergiou, Manuel Bauer, Waltraud Mair, Damaris Bausch-Fluck, Nir Drayman, Bernd Wollscheid, Ariella Oppenheim, Lucas Pelkmans
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0124595

Repurposing Salicylanilide Anthelmintic Drugs to Combat Drug Resistant Staphylococcus aureus
Cited by: 119
Author(s): Rajmohan Rajaraman, Beth Burgwyn Fuchs, Annie L. Conery, Wooseong Kim, Elamparithi Jayamani, Bumsup Kwon, Frederick M. Ausubel, Eleftherios Mylonakis
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0188256

Age of heart disease presentation and dysmorphic nuclei in patients with LMNA mutations
Cited by: 9
Author(s): Jason Q. Core, Mehrsa Mehrabi, Zachery Robinson, Alexander Ochs, Linda A. McCarthy, Michael V. Zaragoza, Anna Grosberg
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0248183

Lumenato protects normal human dermal fibroblasts from neutrophil-induced collagen-3 damage in co-cultures
Cited by: 4
Author(s): Yulia Solomonov, Nurit Hadad, Oleg Pikovsky, Rachel Lévy
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0138748

Trypsin, Tryptase, and Thrombin Polarize Macrophages towards a Pro-Fibrotic M2a Phenotype
Cited by: 28
Author(s): Michael J. V. White, Richard H. Gomer
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0174893

Looking for ugly ducklings: The role of the stability of BrdU-antibody complex and the improved method of the detection of DNA replication
Cited by: 5
Author(s): Anna Ligasová, Petr Konečný, Ivo Frydrych, Karel Koberna
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0217524

ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data
Cited by: 14
Author(s): Jochem H. Smit, Yi‐Chen Li, Eliza M. Warszawik, Andreas Herrmann, Thorben Cordes
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0141966

Loss of CD24 in Mice Leads to Metabolic Dysfunctions and a Reduction in White Adipocyte Tissue
Cited by: 20
Author(s): Nicholas A. Fairbridge, Thomas M Southall, D. Craig Ayre, Yumiko Komatsu, Paula I. Raquet, Robert Brown, Edward Randell, Christopher S. Kovacs, Sherri L. Christian
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0233052

The influenza replication blocking inhibitor LASAG does not sensitize human epithelial cells for bacterial infections
Cited by: 2
Author(s): Janine Wilden, Andre van Krüchten, Lutz Gieselmann, Eike R. Hrincius, Stefanie Deinhardt‐Emmer, Karoline Frieda Haupt, Hannah F. Preugschas, Silke Niemann, Stephan Ludwig, Christina Ehrhardt
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0156312

Fluorogenic Substrates for Visualizing Acidic Organelle Enzyme Activities
Cited by: 10
Author(s): Fiona Karen Harlan, Jason S. Lusk, Breanna Michelle Mohr, Anthony P. Guzikowski, Robert H. Batchelor, Ying Jiang, John J. Naleway
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0220627

IA-Lab: A MATLAB framework for efficient microscopy image analysis development, applied to quantifying intracellular transport of internalized peptide-drug conjugate
Cited by: 0
Author(s): Adam Corrigan, Johan Karlsson, Jan Wildenhain, Laurent Knerr, Maria Ölwegård-Halvarsson, Maria Karlsson, Svenja Lünse, Yinhai Wang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0207872

Novel high–throughput myofibroblast assays identify agonists with therapeutic potential in pulmonary fibrosis that act via EP2 and EP4 receptors
Cited by: 20
Author(s): Patrick Sieber, Anny Schäfer, Raphael Lieberherr, François Le Goff, Manuel Stritt, Richard W. D. Welford, John Gatfield, Oliver Peter, Oliver Nayler, Urs Lüthi
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0007497

Bright Field Microscopy as an Alternative to Whole Cell Fluorescence in Automated Analysis of Macrophage Images
Cited by: 94
Author(s): Jyrki Selinummi, Pekka Ruusuvuori, Irina Podolsky, Adrian Ozinsky, Elizabeth S. Gold, Olli Yli‐Harja, Alan Aderem, Ilya Shmulevich
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0217819

Enhanced histamine-induced itch in diacylglycerol kinase iota knockout mice
Cited by: 9
Author(s): Victoria E. Brings, Jesse K. Niehaus, Bonnie Taylor-Blake, Mark J. Zylka
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0151267

When Phase Contrast Fails: ChainTracer and NucTracer, Two ImageJ Methods for Semi-Automated Single Cell Analysis Using Membrane or DNA Staining
Cited by: 17
Author(s): Simon Syvertsson, Norbert O. E. Vischer, Yongqiang Gao, Leendert W. Hamoen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0109688

Ultra High Content Image Analysis and Phenotype Profiling of 3D Cultured Micro-Tissues
Cited by: 38
Author(s): Zi Di, Maarten Klop, Vasiliki-Maria Rogkoti, Sylvia E. Le Dévédec, Bob van de Water, Fons J. Verbeek, Leo Price, John H.N. Meerman
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0128576

A Defensin from the Model Beetle Tribolium castaneum Acts Synergistically with Telavancin and Daptomycin against Multidrug Resistant Staphylococcus aureus
Cited by: 32
Author(s): Rajmohan Rajaraman, Elamparithi Jayamani, Annie L. Conery, Beth Burgwyn Fuchs, Wooseong Kim, Tatiana Johnston, Andreas Vilcinskas, Frederick M. Ausubel, Eleftherios Mylonakis
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0180540

SlideJ: An ImageJ plugin for automated processing of whole slide images
Cited by: 26
Author(s): Vincenzo Della Mea, Giulia L. Baroni, David Pilutti, Carla Di Loreto
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0115715

Oxidative DNA Damage in Kidneys and Heart of Hypertensive Mice Is Prevented by Blocking Angiotensin II and Aldosterone Receptors
Cited by: 17
Author(s): Susanne Brand, Kerstin Amann, Philipp Mandel, Anna Zimnol, Nicole Schupp
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0093590

Rapid Patterning of 1-D Collagenous Topography as an ECM Protein Fibril Platform for Image Cytometry
Cited by: 24
Author(s): Niannan Xue, Xia Li, Cristina Bertulli, Zhaoying Li, Atipat Patharagulpong, Amine Sadok, Yan Yan Shery Huang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0036438

International Network for Comparison of HIV Neutralization Assays: The NeutNet Report II
Cited by: 68
Author(s): Leo Heyndríckx, Alan Heath, Enas Sheik-Khalil, José Alcamí, Vera Bongertz, Marianne Jansson, Mauro S. Malnati, David C. Montefiori, Christiane Moog, Lynn Morris, Saladin Osmanov, Victoria R. Polonis, Meghna Ramaswamy, Quentin J. Sattentau, Monica Tolazzi, Hanneke Schuitemaker, Betty Willems, Terri Wrin, Éva Mária Fenyõ, Gabriella Scarlatti
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0164811

Targeting Epithelial-Mesenchymal Transition for Identification of Inhibitors for Pancreatic Cancer Cell Invasion and Tumor Spheres Formation
Cited by: 16
Author(s): Kishore Polireddy, Ruochen Dong, Peter R. McDonald, Tao Wang, B. Luke, Ping Chen, Melinda Broward, Anuradha Roy, Qi Chen
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0201747

Development of an automated image analysis protocol for quantification of intracellular forms of Leishmania spp.
Cited by: 19
Author(s): Ana G. Gomes‐Alves, André F. Maia, Tânia Cruz, Helena Carla Castro, Ana M. Tomás
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0207211

Controlling fluid flow to improve cell seeding uniformity
Cited by: 9
Author(s): Paul M. Reynolds, Camilla Holzmann Rasmussen, Mattias Hansson, Martin Dufva, Mathis O. Riehle, Nikolaj Gadegaard
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0162540

Passive Entrapment of Tumor Cells Determines Metastatic Dissemination to Spinal Bone and Other Osseous Tissues
Cited by: 9
Author(s): Thomas Broggini, Andras Piffko, Christian J. Hoffmann, Christoph Harms, Peter Vajkoczy, Marcus Czabanka
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0144404

Extending Ripley’s K-Function to Quantify Aggregation in 2-D Grayscale Images
Cited by: 15
Author(s): Mohamed Amgad, Anri Itoh, Marco Man Kin Tsui
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0088683

deltaNp63 Has a Role in Maintaining Epithelial Integrity in Airway Epithelium
Cited by: 44
Author(s): Ari Jón Arason, Hulda R. Jónsdóttir, Skarphéđinn Halldórsson, Berglind Eva Benediktsdóttir, Jón Þór Bergþórsson, Sævar Ingþórsson, Ólafur Baldursson, Satrajit Sinha, Thorarinn Gudjonsson, Magnús K. Magnússon
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0200342

Cardiac regenerative capacity is age- and disease-dependent in childhood heart disease
Cited by: 23
Author(s): Alexandra Traister, Rachana Patel, Anita Huang, Sarvatit Patel, Julia Plakhotnik, Jae Eun Lee, Maria Gonzalez Medina, Chris Welsh, Prutha Ruparel, Libo Zhang, Mark K. Friedberg, Jason T. Maynes, John G. Coles
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0148469

High-Throughput Method for Automated Colony and Cell Counting by Digital Image Analysis Based on Edge Detection
Cited by: 86
Author(s): Priya Choudhry
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0089136

Rac1 Participates in Thermally Induced Alterations of the Cytoskeleton, Cell Morphology and Lipid Rafts, and Regulates the Expression of Heat Shock Proteins in B16F10 Melanoma Cells
Cited by: 24
Author(s): Burçin Güngör, Imre Gombos, Tim Crul, Ferhan Ayaydin, László Szabó, Zsolt Török, Lajos Mátés, László Vı́gh, Ibolya Horváth
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0192463

Accurately tracking single-cell movement trajectories in microfluidic cell sorting devices
Cited by: 12
Author(s): Jenny Jeong, Nicholas J. Frohberg, Enlu Zhou, Todd Sulchek, Peng Qiu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0123912

The Non-Catalytic Domains of Drosophila Katanin Regulate Its Abundance and Microtubule-Disassembly Activity
Cited by: 12
Author(s): Kyle D. Grode, Stephen L. Rogers
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0161965

A Genome-Wide siRNA Screen Implicates Spire1/2 in SipA-Driven Salmonella Typhimurium Host Cell Invasion
Cited by: 16
Author(s): Daniel Andritschke, Sabrina Dilling, Mario Emmenlauer, Tobias Welz, Fabian Schmich, Benjamin Misselwitz, Pauli Rämö, Klemens Rottner, Eugen Kerkhoff, Teiji Wada, Josef Penninger, Niko Beerenwinkel, Péter Horváth, Christoph Dehio, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0103203

Dynamic Recruitment of Protein Tyrosine Phosphatase PTPD1 to EGF Stimulation Sites Potentiates EGFR Activation
Cited by: 18
Author(s): Pedro Roda-Navarro, Philippe I. H. Bastiaens
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0153487

The Timing of Raf/ERK and AKT Activation in Protecting PC12 Cells against Oxidative Stress
Cited by: 26
Author(s): Qunxiang Ong, Shunling Guo, Liting Duan, Kai Zhang, Eleanor Ann Collier, Bianxiao Cui
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0161813

The Neurite Outgrowth Inhibitory Nogo-A-Δ20 Region Is an Intrinsically Disordered Segment Harbouring Three Stretches with Helical Propensity
Cited by: 2
Author(s): Viviane Zelenay, Michael E. Arzt, Stefan Bibow, Martin E. Schwab, Roland Riek
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0012212

Filamin A Binds to CCR2B and Regulates Its Internalization
Cited by: 21
Author(s): Laura Minsaas, Jesús Planagumà, Michael T. Madziva, Beate F. Krakstad, Míriam Masià-Balagué, Arieh A. Katz, Anna M. Aragay
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0018189

A PiggyBac-Based Recessive Screening Method to Identify Pluripotency Regulators
Cited by: 64
Author(s): Ge Guo, Yue Huang, Peter Humphreys, Xiaozhong Wang, Austin Smith
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0003865

Robust Spatial Sensing of Mating Pheromone Gradients by Yeast Cells
Cited by: 105
Author(s): Travis I. Moore, Ching-Shan Chou, Qing Nie, Noo Li Jeon, Tongxun Yi
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0188343

Defining external factors that determine neuronal survival, apoptosis and necrosis during excitotoxic injury using a high content screening imaging platform
Cited by: 8
Author(s): Ujval Anilkumar, Petronela Weisová, Jasmin Schmid, Tytus Bernaś, Heinrich J. Huber, Heiko Düßmann, Niamh M. C. Connolly, Jochen H M Prehn
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0122992

High Expression of KCa3.1 in Patients with Clear Cell Renal Carcinoma Predicts High Metastatic Risk and Poor Survival
Cited by: 51
Author(s): Maj Rabjerg, Aida Oliván-Viguera, Lars Hansen, Line Jensen, Linda Sevelsted-Møller, Steen Walter, Boye L. Jensen, Niels Marcussen, Ralf Köhler
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0050730

Sonoporation Delivery of Monoclonal Antibodies against Human Papillomavirus 16 E6 Restores p53 Expression in Transformed Cervical Keratinocytes
Cited by: 38
Author(s): Melissa Togtema, Samuel Pichardo, Robert Jackson, Paul F. Lambert, Laura Curiel, Ingeborg Zehbe
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0164645

A High-Content Larval Zebrafish Brain Imaging Method for Small Molecule Drug Discovery
Cited by: 10
Author(s): Harrison Liu, Steven Chen, Kevin Huang, Jeffrey Kim, Han Mo, Raffael Iovine, Julie Gendre, P. Pascal, Qiang Li, Yaping Sun, Zhiqiang Dong, Michelle R. Arkin, Su Guo, Bo Huang
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0184973

Sevoflurane protects rat brain endothelial barrier structure and function after hypoxia-reoxygenation injury
Cited by: 19
Author(s): Tanja Restin, Marie-Elisabeth Kajdi, Martin Schläpfer, Birgit Roth Z’graggen, Christa Booy, Claudia Dumrese, Beatrice Beck‐Schimmer
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0054068

A Novel Dictionary Based Computer Vision Method for the Detection of Cell Nuclei
Cited by: 4
Author(s): Jonas De Vylder, Jan Aelterman, Trees Lepez, Mado Vandewoestyne, Koen Douterloigne, Dieter Deforce, Wilfried Philips
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0068450

High-Content Analysis of Sequential Events during the Early Phase of Influenza A Virus Infection
Cited by: 64
Author(s): Indranil Banerjee, Yohei Yamauchi, Ari Helenius, Péter Horváth
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0095171

Increased Migration of Human Mesenchymal Stromal Cells by Autocrine Motility Factor (AMF) Resulted in Enhanced Recruitment towards Hepatocellular Carcinoma
Cited by: 43
Author(s): Juan Bayo, Esteban Fiore, Jorge B. Aquino, Mariana Malvicini, Manglio Rizzo, Estanislao Peixoto, Oscar Andriani, Laura Alaniz, Flavia Piccioni, Marcela F. Bolontrade, Osvaldo L. Podhajcer, Mariana Garcı́a, Guillermo Mazzolini
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0191102

Ultrasound-mediated delivery and distribution of polymeric nanoparticles in the normal brain parenchyma of a metastatic brain tumour model
Cited by: 38
Author(s): Habib Baghirov, Sofie Snipstad, Einar Sulheim, Sigrid Berg, Rune Hansen, Frits Thorsen, Ýrr Mørch, Catharina de Lange Davies, Andreas Åslund
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0164919

Growth-altering microbial interactions are responsive to chemical context
Cited by: 15
Author(s): Angela Liu, Anne M. Archer, Matthew B. Biggs, Jason A. Papin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0075317

Hedgehog/GLI Signaling Activates Suppressor of Cytokine Signaling 1 (SOCS1) in Epidermal and Neural Tumor Cells
Cited by: 20
Author(s): Sandra Laner-Plamberger, Florian Wolff, Alexandra Kaser-Eichberger, Stefan Swierczynski, Cornelia Hauser‐Kronberger, Anna‐Maria Frischauf, Thomas Eichberger
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0170415

Metabolic Imaging of Head and Neck Cancer Organoids
Cited by: 47
Author(s): Amy T. Shah, Tiffany M. Heaster, Melissa C. Skala
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0178260

Delivery of the autofluorescent protein R-phycoerythrin by calcium phosphate nanoparticles into four different eukaryotic cell lines (HeLa, HEK293T, MG-63, MC3T3): Highly efficient, but leading to endolysosomal proteolysis in HeLa and MC3T3 cells
Cited by: 21
Author(s): Mathias Kopp, Olga Rotan, Chrisovalantis Papadopoulos, Nina Schulze, Hemmo Meyer, Matthias Epple
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0189903

Bicarbonate buffered peritoneal dialysis fluid upregulates angiopoietin-1 and promotes vessel maturation
Cited by: 12
Author(s): Gwendolyn Eich, Mária Bartošová, Christian Tischer, Tanja Wlodkowski, Silvia Betti, Sebastian Pichl, Nicole Kraewer, Bruno Ranchin, Karel Vondrák, Max C. Liebau, Thilo Hackert, Claus Peter Schmitt
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0175880

Cell cycle profiling by image and flow cytometry: The optimised protocol for the detection of replicational activity using 5-Bromo-2′-deoxyuridine, low concentration of hydrochloric acid and exonuclease III
Cited by: 7
Author(s): Anna Ligasová, Petr Konečný, Ivo Frydrych, Karel Koberna
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0180810

Vitamin D-deficient mice have more invasive urinary tract infection
Cited by: 14
Author(s): Olof Hertting, Petra Lüthje, Devin P. Sullivan, Pontus Aspenström, Annelie Brauner
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0022868

High-Throughput Screening of Australian Marine Organism Extracts for Bioactive Molecules Affecting the Cellular Storage of Neutral Lipids
Cited by: 9
Author(s): James Rae, Frank Fontaine, Angela A. Salim, Harriet P. Lo, Robert J. Capon, Robert G. Parton, Sally Martin
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0089189

Whole Animal Automated Platform for Drug Discovery against Multi-Drug Resistant Staphylococcus aureus
Cited by: 87
Author(s): Rajmohan Rajaraman, Beth Burgwyn Fuchs, Elamparithi Jayamani, Young-Hoon Kim, Jonah Larkins-Ford, Annie L. Conery, Frederick M. Ausubel, Eleftherios Mylonakis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0140730

Flow-Based Single Cell Deposition for High-Throughput Screening of Protein Libraries
Cited by: 3
Author(s): Cassandra Stowe, Arnold Pizzey, Tammy L. Kalber, Adam Badar, Mark F. Lythgoe, Martin Pulé
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0157644

AMP-Activated Kinase (AMPK) Activation by AICAR in Human White Adipocytes Derived from Pericardial White Adipose Tissue Stem Cells Induces a Partial Beige-Like Phenotype
Cited by: 28
Author(s): Omar Abdul‐Rahman, Endre Kristóf, Quang-Minh Doan-Xuan, András Vida, L Nagy, Ambrus Horváth, József Simon, T Marós, István Szentkirályi, Lehel Palotás, Tamás Debreceni, Péter Csizmadia, Tamás Szerafin, Tamás Fodor, Magdolna Szántó, Attila Tóth, Borbála Kiss, Zsolt Bacsó, Péter Bai
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0040002

Indirect Effects of Wnt3a/β-Catenin Signalling Support Mouse Spermatogonial Stem Cells In Vitro
Cited by: 54
Author(s): Jonathan R. Yeh, Xiangfan Zhang, Makoto Nagano
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0094032

Noninvasive Imaging of In Vivo MuRF1 Expression during Muscle Atrophy
Cited by: 2
Author(s): Wei Li, Mark D. Claypool, Annabelle M. Friera, John McLaughlin, Kristen A. Baltgalvis, Ira J. Smith, Taisei Kinoshita, Kathy White, Wayne Lang, Guillermo Godinez, Donald G. Payan, Todd M. Kinsella
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0027593

Cell Motility Dynamics: A Novel Segmentation Algorithm to Quantify Multi-Cellular Bright Field Microscopy Images
Cited by: 37
Author(s): Assaf Zaritsky, Sari Natan, Judith Horev, Inbal Hecht, Lior Wolf, Eshel Ben‐Jacob, Ilan Tsarfaty
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0224405

Tributyltin chloride (TBT) induces RXRA down-regulation and lipid accumulation in human liver cells
Cited by: 22
Author(s): Fabio Stossi, Radhika D. Dandekar, Hannah Johnson, Philip Lavere, Charles E. Foulds, Maureen G. Mancini, Michael A. Mancini
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0196529

A murine glaucoma model induced by rapid in vivo photopolymerization of hyaluronic acid glycidyl methacrylate
Cited by: 20
Author(s): Chin-Lin Guo, Xin Qu, Nalini Rangaswamy, Barrett Leehy, Chuanxi Xiang, Dennis S. Rice, Ganesh Prasanna
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0057142

WormSizer: High-throughput Analysis of Nematode Size and Shape
Cited by: 103
Author(s): Brad T. Moore, James M. Jordan, L. Ryan Baugh
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0009955

A Quantitative Image Cytometry Technique for Time Series or Population Analyses of Signaling Networks
Cited by: 28
Author(s): Yu Ichi Ozaki, Shinsuke Uda, Takeshi Saito, Jaehoon Chung, Hiroyuki Konishi, Shinya Kuroda
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0096426

Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis
Cited by: 68
Author(s): Ville Härmä, Hannu-Pekka Schukov, Antti P. Happonen, Ilmari Ahonen, Johannes Virtanen, Harri Siitari, Malin Åkerfelt, Jyrki Lötjönen, Matthias Nees
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0077053

A High-Content Small Molecule Screen Identifies Sensitivity of Glioblastoma Stem Cells to Inhibition of Polo-Like Kinase 1
Cited by: 53
Author(s): Davide Danovi, Amos Folarin, Sabine Gogolok, Christine Ender, Ahmed M.O. Elbatsh, Pär G. Engström, Stefan H. Stricker, Sladjana Gagrica, Ana Ruxandra Georgian, Yu Ding, Kin Pong U, Kevin J. Harvey, Patrizia Ferretti, Patrick J. Paddison, Jane E. Preston, N. Joan Abbott, Paul Bertone, Austin Smith, Steven M. Pollard
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0083882

TLR9 and RIG-I Signaling in Human Endocervical Epithelial Cells Modulates Inflammatory Responses of Macrophages and Dendritic Cells In Vitro
Cited by: 21
Author(s): Ameya Sathe, K. J. Reddy
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0190623

Conditional deletion of RB1 in the Tie2 lineage leads to aortic valve regurgitation
Cited by: 4
Author(s): Marina Freytsis, Lauren Baugh, Zhiyi Liu, Irene Georgakoudi, Philip W. Hinds, Lauren D. Black, Gordon S. Huggins
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0210706

Viable and necrotic tumor assessment from whole slide images of osteosarcoma using machine-learning and deep-learning models
Cited by: 72
Author(s): Harish Babu Arunachalam, Rashika Mishra, Ovidiu Daescu, Kevin B Cederberg, Dinesh Rakheja, Anita Sengupta, David Léonard, Rami R. Hallac, Patrick J. Leavey
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0078212

An Open Source Based High Content Screening Method for Cell Biology Laboratories Investigating Cell Spreading and Adhesion
Cited by: 5
Author(s): André Schmandke, Antonio Schmandke, Maurianne A. Pietro, Martin E. Schwab
Software Mentions: 1
Published: almost 12 years ago