10.1371/journal.pone.0007497

Bright Field Microscopy as an Alternative to Whole Cell Fluorescence in Automated Analysis of Macrophage Images
Cited by: 94
Author(s): Jyrki Selinummi, Pekka Ruusuvuori, Irina Podolsky, Adrian Ozinsky, Elizabeth S. Gold, Olli Yli‐Harja, Alan Aderem, Ilya Shmulevich
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0217819

Enhanced histamine-induced itch in diacylglycerol kinase iota knockout mice
Cited by: 9
Author(s): Victoria E. Brings, Jesse K. Niehaus, Bonnie Taylor-Blake, Mark J. Zylka
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0151267

When Phase Contrast Fails: ChainTracer and NucTracer, Two ImageJ Methods for Semi-Automated Single Cell Analysis Using Membrane or DNA Staining
Cited by: 17
Author(s): Simon Syvertsson, Norbert O. E. Vischer, Yongqiang Gao, Leendert W. Hamoen
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0109688

Ultra High Content Image Analysis and Phenotype Profiling of 3D Cultured Micro-Tissues
Cited by: 38
Author(s): Zi Di, Maarten Klop, Vasiliki-Maria Rogkoti, Sylvia E. Le Dévédec, Bob van de Water, Fons J. Verbeek, Leo Price, John H.N. Meerman
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0128576

A Defensin from the Model Beetle Tribolium castaneum Acts Synergistically with Telavancin and Daptomycin against Multidrug Resistant Staphylococcus aureus
Cited by: 32
Author(s): Rajmohan Rajaraman, Elamparithi Jayamani, Annie L. Conery, Beth Burgwyn Fuchs, Wooseong Kim, Tatiana Johnston, Andreas Vilcinskas, Frederick M. Ausubel, Eleftherios Mylonakis
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0180540

SlideJ: An ImageJ plugin for automated processing of whole slide images
Cited by: 26
Author(s): Vincenzo Della Mea, Giulia L. Baroni, David Pilutti, Carla Di Loreto
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0115715

Oxidative DNA Damage in Kidneys and Heart of Hypertensive Mice Is Prevented by Blocking Angiotensin II and Aldosterone Receptors
Cited by: 17
Author(s): Susanne Brand, Kerstin Amann, Philipp Mandel, Anna Zimnol, Nicole Schupp
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0093590

Rapid Patterning of 1-D Collagenous Topography as an ECM Protein Fibril Platform for Image Cytometry
Cited by: 24
Author(s): Niannan Xue, Xia Li, Cristina Bertulli, Zhaoying Li, Atipat Patharagulpong, Amine Sadok, Yan Yan Shery Huang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0036438

International Network for Comparison of HIV Neutralization Assays: The NeutNet Report II
Cited by: 68
Author(s): Leo Heyndríckx, Alan Heath, Enas Sheik-Khalil, José Alcamí, Vera Bongertz, Marianne Jansson, Mauro S. Malnati, David C. Montefiori, Christiane Moog, Lynn Morris, Saladin Osmanov, Victoria R. Polonis, Meghna Ramaswamy, Quentin J. Sattentau, Monica Tolazzi, Hanneke Schuitemaker, Betty Willems, Terri Wrin, Éva Mária Fenyõ, Gabriella Scarlatti
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0164811

Targeting Epithelial-Mesenchymal Transition for Identification of Inhibitors for Pancreatic Cancer Cell Invasion and Tumor Spheres Formation
Cited by: 16
Author(s): Kishore Polireddy, Ruochen Dong, Peter R. McDonald, Tao Wang, B. Luke, Ping Chen, Melinda Broward, Anuradha Roy, Qi Chen
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0201747

Development of an automated image analysis protocol for quantification of intracellular forms of Leishmania spp.
Cited by: 19
Author(s): Ana G. Gomes‐Alves, André F. Maia, Tânia Cruz, Helena Carla Castro, Ana M. Tomás
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0207211

Controlling fluid flow to improve cell seeding uniformity
Cited by: 9
Author(s): Paul M. Reynolds, Camilla Holzmann Rasmussen, Mattias Hansson, Martin Dufva, Mathis O. Riehle, Nikolaj Gadegaard
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0162540

Passive Entrapment of Tumor Cells Determines Metastatic Dissemination to Spinal Bone and Other Osseous Tissues
Cited by: 9
Author(s): Thomas Broggini, Andras Piffko, Christian J. Hoffmann, Christoph Harms, Peter Vajkoczy, Marcus Czabanka
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0144404

Extending Ripley’s K-Function to Quantify Aggregation in 2-D Grayscale Images
Cited by: 15
Author(s): Mohamed Amgad, Anri Itoh, Marco Man Kin Tsui
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0088683

deltaNp63 Has a Role in Maintaining Epithelial Integrity in Airway Epithelium
Cited by: 44
Author(s): Ari Jón Arason, Hulda R. Jónsdóttir, Skarphéđinn Halldórsson, Berglind Eva Benediktsdóttir, Jón Þór Bergþórsson, Sævar Ingþórsson, Ólafur Baldursson, Satrajit Sinha, Thorarinn Gudjonsson, Magnús K. Magnússon
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0200342

Cardiac regenerative capacity is age- and disease-dependent in childhood heart disease
Cited by: 23
Author(s): Alexandra Traister, Rachana Patel, Anita Huang, Sarvatit Patel, Julia Plakhotnik, Jae Eun Lee, Maria Gonzalez Medina, Chris Welsh, Prutha Ruparel, Libo Zhang, Mark K. Friedberg, Jason T. Maynes, John G. Coles
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0148469

High-Throughput Method for Automated Colony and Cell Counting by Digital Image Analysis Based on Edge Detection
Cited by: 86
Author(s): Priya Choudhry
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0089136

Rac1 Participates in Thermally Induced Alterations of the Cytoskeleton, Cell Morphology and Lipid Rafts, and Regulates the Expression of Heat Shock Proteins in B16F10 Melanoma Cells
Cited by: 24
Author(s): Burçin Güngör, Imre Gombos, Tim Crul, Ferhan Ayaydin, László Szabó, Zsolt Török, Lajos Mátés, László Vı́gh, Ibolya Horváth
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0192463

Accurately tracking single-cell movement trajectories in microfluidic cell sorting devices
Cited by: 12
Author(s): Jenny Jeong, Nicholas J. Frohberg, Enlu Zhou, Todd Sulchek, Peng Qiu
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0123912

The Non-Catalytic Domains of Drosophila Katanin Regulate Its Abundance and Microtubule-Disassembly Activity
Cited by: 12
Author(s): Kyle D. Grode, Stephen L. Rogers
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0161965

A Genome-Wide siRNA Screen Implicates Spire1/2 in SipA-Driven Salmonella Typhimurium Host Cell Invasion
Cited by: 16
Author(s): Daniel Andritschke, Sabrina Dilling, Mario Emmenlauer, Tobias Welz, Fabian Schmich, Benjamin Misselwitz, Pauli Rämö, Klemens Rottner, Eugen Kerkhoff, Teiji Wada, Josef Penninger, Niko Beerenwinkel, Péter Horváth, Christoph Dehio, Wolf‐Dietrich Hardt
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0103203

Dynamic Recruitment of Protein Tyrosine Phosphatase PTPD1 to EGF Stimulation Sites Potentiates EGFR Activation
Cited by: 18
Author(s): Pedro Roda-Navarro, Philippe I. H. Bastiaens
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0153487

The Timing of Raf/ERK and AKT Activation in Protecting PC12 Cells against Oxidative Stress
Cited by: 26
Author(s): Qunxiang Ong, Shunling Guo, Liting Duan, Kai Zhang, Eleanor Ann Collier, Bianxiao Cui
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0161813

The Neurite Outgrowth Inhibitory Nogo-A-Δ20 Region Is an Intrinsically Disordered Segment Harbouring Three Stretches with Helical Propensity
Cited by: 2
Author(s): Viviane Zelenay, Michael E. Arzt, Stefan Bibow, Martin E. Schwab, Roland Riek
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0012212

Filamin A Binds to CCR2B and Regulates Its Internalization
Cited by: 21
Author(s): Laura Minsaas, Jesús Planagumà, Michael T. Madziva, Beate F. Krakstad, Míriam Masià-Balagué, Arieh A. Katz, Anna M. Aragay
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0018189

A PiggyBac-Based Recessive Screening Method to Identify Pluripotency Regulators
Cited by: 64
Author(s): Ge Guo, Yue Huang, Peter Humphreys, Xiaozhong Wang, Austin Smith
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0003865

Robust Spatial Sensing of Mating Pheromone Gradients by Yeast Cells
Cited by: 105
Author(s): Travis I. Moore, Ching-Shan Chou, Qing Nie, Noo Li Jeon, Tongxun Yi
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0188343

Defining external factors that determine neuronal survival, apoptosis and necrosis during excitotoxic injury using a high content screening imaging platform
Cited by: 8
Author(s): Ujval Anilkumar, Petronela Weisová, Jasmin Schmid, Tytus Bernaś, Heinrich J. Huber, Heiko Düßmann, Niamh M. C. Connolly, Jochen H M Prehn
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0122992

High Expression of KCa3.1 in Patients with Clear Cell Renal Carcinoma Predicts High Metastatic Risk and Poor Survival
Cited by: 51
Author(s): Maj Rabjerg, Aida Oliván-Viguera, Lars Hansen, Line Jensen, Linda Sevelsted-Møller, Steen Walter, Boye L. Jensen, Niels Marcussen, Ralf Köhler
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0050730

Sonoporation Delivery of Monoclonal Antibodies against Human Papillomavirus 16 E6 Restores p53 Expression in Transformed Cervical Keratinocytes
Cited by: 38
Author(s): Melissa Togtema, Samuel Pichardo, Robert Jackson, Paul F. Lambert, Laura Curiel, Ingeborg Zehbe
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0164645

A High-Content Larval Zebrafish Brain Imaging Method for Small Molecule Drug Discovery
Cited by: 10
Author(s): Harrison Liu, Steven Chen, Kevin Huang, Jeffrey Kim, Han Mo, Raffael Iovine, Julie Gendre, P. Pascal, Qiang Li, Yaping Sun, Zhiqiang Dong, Michelle R. Arkin, Su Guo, Bo Huang
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0184973

Sevoflurane protects rat brain endothelial barrier structure and function after hypoxia-reoxygenation injury
Cited by: 19
Author(s): Tanja Restin, Marie-Elisabeth Kajdi, Martin Schläpfer, Birgit Roth Z’graggen, Christa Booy, Claudia Dumrese, Beatrice Beck‐Schimmer
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0054068

A Novel Dictionary Based Computer Vision Method for the Detection of Cell Nuclei
Cited by: 4
Author(s): Jonas De Vylder, Jan Aelterman, Trees Lepez, Mado Vandewoestyne, Koen Douterloigne, Dieter Deforce, Wilfried Philips
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0068450

High-Content Analysis of Sequential Events during the Early Phase of Influenza A Virus Infection
Cited by: 64
Author(s): Indranil Banerjee, Yohei Yamauchi, Ari Helenius, Péter Horváth
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0095171

Increased Migration of Human Mesenchymal Stromal Cells by Autocrine Motility Factor (AMF) Resulted in Enhanced Recruitment towards Hepatocellular Carcinoma
Cited by: 43
Author(s): Juan Bayo, Esteban Fiore, Jorge B. Aquino, Mariana Malvicini, Manglio Rizzo, Estanislao Peixoto, Oscar Andriani, Laura Alaniz, Flavia Piccioni, Marcela F. Bolontrade, Osvaldo L. Podhajcer, Mariana Garcı́a, Guillermo Mazzolini
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0191102

Ultrasound-mediated delivery and distribution of polymeric nanoparticles in the normal brain parenchyma of a metastatic brain tumour model
Cited by: 38
Author(s): Habib Baghirov, Sofie Snipstad, Einar Sulheim, Sigrid Berg, Rune Hansen, Frits Thorsen, Ýrr Mørch, Catharina de Lange Davies, Andreas Åslund
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0164919

Growth-altering microbial interactions are responsive to chemical context
Cited by: 15
Author(s): Angela Liu, Anne M. Archer, Matthew B. Biggs, Jason A. Papin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0075317

Hedgehog/GLI Signaling Activates Suppressor of Cytokine Signaling 1 (SOCS1) in Epidermal and Neural Tumor Cells
Cited by: 20
Author(s): Sandra Laner-Plamberger, Florian Wolff, Alexandra Kaser-Eichberger, Stefan Swierczynski, Cornelia Hauser‐Kronberger, Anna‐Maria Frischauf, Thomas Eichberger
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0170415

Metabolic Imaging of Head and Neck Cancer Organoids
Cited by: 47
Author(s): Amy T. Shah, Tiffany M. Heaster, Melissa C. Skala
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0178260

Delivery of the autofluorescent protein R-phycoerythrin by calcium phosphate nanoparticles into four different eukaryotic cell lines (HeLa, HEK293T, MG-63, MC3T3): Highly efficient, but leading to endolysosomal proteolysis in HeLa and MC3T3 cells
Cited by: 21
Author(s): Mathias Kopp, Olga Rotan, Chrisovalantis Papadopoulos, Nina Schulze, Hemmo Meyer, Matthias Epple
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0189903

Bicarbonate buffered peritoneal dialysis fluid upregulates angiopoietin-1 and promotes vessel maturation
Cited by: 12
Author(s): Gwendolyn Eich, Mária Bartošová, Christian Tischer, Tanja Wlodkowski, Silvia Betti, Sebastian Pichl, Nicole Kraewer, Bruno Ranchin, Karel Vondrák, Max C. Liebau, Thilo Hackert, Claus Peter Schmitt
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0175880

Cell cycle profiling by image and flow cytometry: The optimised protocol for the detection of replicational activity using 5-Bromo-2′-deoxyuridine, low concentration of hydrochloric acid and exonuclease III
Cited by: 7
Author(s): Anna Ligasová, Petr Konečný, Ivo Frydrych, Karel Koberna
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0180810

Vitamin D-deficient mice have more invasive urinary tract infection
Cited by: 14
Author(s): Olof Hertting, Petra Lüthje, Devin P. Sullivan, Pontus Aspenström, Annelie Brauner
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0022868

High-Throughput Screening of Australian Marine Organism Extracts for Bioactive Molecules Affecting the Cellular Storage of Neutral Lipids
Cited by: 9
Author(s): James Rae, Frank Fontaine, Angela A. Salim, Harriet P. Lo, Robert J. Capon, Robert G. Parton, Sally Martin
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0089189

Whole Animal Automated Platform for Drug Discovery against Multi-Drug Resistant Staphylococcus aureus
Cited by: 87
Author(s): Rajmohan Rajaraman, Beth Burgwyn Fuchs, Elamparithi Jayamani, Young-Hoon Kim, Jonah Larkins-Ford, Annie L. Conery, Frederick M. Ausubel, Eleftherios Mylonakis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0140730

Flow-Based Single Cell Deposition for High-Throughput Screening of Protein Libraries
Cited by: 3
Author(s): Cassandra Stowe, Arnold Pizzey, Tammy L. Kalber, Adam Badar, Mark F. Lythgoe, Martin Pulé
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0157644

AMP-Activated Kinase (AMPK) Activation by AICAR in Human White Adipocytes Derived from Pericardial White Adipose Tissue Stem Cells Induces a Partial Beige-Like Phenotype
Cited by: 28
Author(s): Omar Abdul‐Rahman, Endre Kristóf, Quang-Minh Doan-Xuan, András Vida, L Nagy, Ambrus Horváth, József Simon, T Marós, István Szentkirályi, Lehel Palotás, Tamás Debreceni, Péter Csizmadia, Tamás Szerafin, Tamás Fodor, Magdolna Szántó, Attila Tóth, Borbála Kiss, Zsolt Bacsó, Péter Bai
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0040002

Indirect Effects of Wnt3a/β-Catenin Signalling Support Mouse Spermatogonial Stem Cells In Vitro
Cited by: 54
Author(s): Jonathan R. Yeh, Xiangfan Zhang, Makoto Nagano
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0094032

Noninvasive Imaging of In Vivo MuRF1 Expression during Muscle Atrophy
Cited by: 2
Author(s): Wei Li, Mark D. Claypool, Annabelle M. Friera, John McLaughlin, Kristen A. Baltgalvis, Ira J. Smith, Taisei Kinoshita, Kathy White, Wayne Lang, Guillermo Godinez, Donald G. Payan, Todd M. Kinsella
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0027593

Cell Motility Dynamics: A Novel Segmentation Algorithm to Quantify Multi-Cellular Bright Field Microscopy Images
Cited by: 37
Author(s): Assaf Zaritsky, Sari Natan, Judith Horev, Inbal Hecht, Lior Wolf, Eshel Ben‐Jacob, Ilan Tsarfaty
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0224405

Tributyltin chloride (TBT) induces RXRA down-regulation and lipid accumulation in human liver cells
Cited by: 22
Author(s): Fabio Stossi, Radhika D. Dandekar, Hannah Johnson, Philip Lavere, Charles E. Foulds, Maureen G. Mancini, Michael A. Mancini
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0196529

A murine glaucoma model induced by rapid in vivo photopolymerization of hyaluronic acid glycidyl methacrylate
Cited by: 20
Author(s): Chin-Lin Guo, Xin Qu, Nalini Rangaswamy, Barrett Leehy, Chuanxi Xiang, Dennis S. Rice, Ganesh Prasanna
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0057142

WormSizer: High-throughput Analysis of Nematode Size and Shape
Cited by: 103
Author(s): Brad T. Moore, James M. Jordan, L. Ryan Baugh
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0009955

A Quantitative Image Cytometry Technique for Time Series or Population Analyses of Signaling Networks
Cited by: 28
Author(s): Yu Ichi Ozaki, Shinsuke Uda, Takeshi Saito, Jaehoon Chung, Hiroyuki Konishi, Shinya Kuroda
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0096426

Quantification of Dynamic Morphological Drug Responses in 3D Organotypic Cell Cultures by Automated Image Analysis
Cited by: 68
Author(s): Ville Härmä, Hannu-Pekka Schukov, Antti P. Happonen, Ilmari Ahonen, Johannes Virtanen, Harri Siitari, Malin Åkerfelt, Jyrki Lötjönen, Matthias Nees
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0077053

A High-Content Small Molecule Screen Identifies Sensitivity of Glioblastoma Stem Cells to Inhibition of Polo-Like Kinase 1
Cited by: 53
Author(s): Davide Danovi, Amos Folarin, Sabine Gogolok, Christine Ender, Ahmed M.O. Elbatsh, Pär G. Engström, Stefan H. Stricker, Sladjana Gagrica, Ana Ruxandra Georgian, Yu Ding, Kin Pong U, Kevin J. Harvey, Patrizia Ferretti, Patrick J. Paddison, Jane E. Preston, N. Joan Abbott, Paul Bertone, Austin Smith, Steven M. Pollard
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0083882

TLR9 and RIG-I Signaling in Human Endocervical Epithelial Cells Modulates Inflammatory Responses of Macrophages and Dendritic Cells In Vitro
Cited by: 21
Author(s): Ameya Sathe, K. J. Reddy
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0190623

Conditional deletion of RB1 in the Tie2 lineage leads to aortic valve regurgitation
Cited by: 4
Author(s): Marina Freytsis, Lauren Baugh, Zhiyi Liu, Irene Georgakoudi, Philip W. Hinds, Lauren D. Black, Gordon S. Huggins
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0210706

Viable and necrotic tumor assessment from whole slide images of osteosarcoma using machine-learning and deep-learning models
Cited by: 72
Author(s): Harish Babu Arunachalam, Rashika Mishra, Ovidiu Daescu, Kevin B Cederberg, Dinesh Rakheja, Anita Sengupta, David Léonard, Rami R. Hallac, Patrick J. Leavey
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0078212

An Open Source Based High Content Screening Method for Cell Biology Laboratories Investigating Cell Spreading and Adhesion
Cited by: 5
Author(s): André Schmandke, Antonio Schmandke, Maurianne A. Pietro, Martin E. Schwab
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0101718

Functional Characterization of Friedreich Ataxia iPS-Derived Neuronal Progenitors and Their Integration in the Adult Brain
Cited by: 24
Author(s): Matthew Bird, Karina Needham, Ann E. Frazier, Jorien van Rooijen, Joseph Y.-T. Leung, Shelley R. Hough, Mark Denham, Matthew E. Thornton, Clare L. Parish, Bryony A Nayagam, Martín F. Pera, David R. Thorburn, Lachlan H. Thompson, Mirella Dottori
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0194716

A Rac1-FMNL2 signaling module affects cell-cell contact formation independent of Cdc42 and membrane protrusions
Cited by: 15
Author(s): Hanna Grobe, Andrea Wüstenhagen, Christian Baarlink, Robert Grosse, Katharina Grikscheit
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0177921

Evidence for pleural epithelial-mesenchymal transition in murine compensatory lung growth
Cited by: 11
Author(s): Alexandra B. Ysasi, Willi L. Wagner, Cristian D. Valenzuela, Arne Kienzle, Andrew B. Servais, Robert D. Bennett, Akira Tsuda, Maximilian Ackermann, Steven J. Mentzer
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0092649

Interleukin-6 Secretion by Astrocytes Is Dynamically Regulated by PI3K-mTOR-Calcium Signaling
Cited by: 32
Author(s): Simone Codeluppi, Teresa Fernández-Zafra, Katalin Sándor, Jacob Kjell, Qingsong Liu, Mathew Abrams, Lar̀s Olson, Nathanael S. Gray, Camilla I. Svensson, Per Uhlén
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0069488

Substrate-Dependent Assembly of the Tat Translocase as Observed in Live Escherichia coli Cells
Cited by: 53
Author(s): Patrick P. Rose, Julia Fröbel, Peter L. Graumann, Matthias Müller
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0023972

Intradermal Indocyanine Green for In Vivo Fluorescence Laser Scanning Microscopy of Human Skin: A Pilot Study
Cited by: 27
Author(s): Constanze Jonak, Hans Skvara, Rainer Kunstfeld, Franz Trautinger, Johannes A. Schmid
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0041633

Local Oxidative Stress Expansion through Endothelial Cells – A Key Role for Gap Junction Intercellular Communication
Cited by: 35
Author(s): Ilan Feine, Iddo Pinkas, Yoram Salomon, Avigdor Scherz
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0082982

Comparative Analysis of Radiosensitizers for K-RAS Mutant Rectal Cancers
Cited by: 26
Author(s): Laura B. Kleiman, Angela M. Krebs, Stephen Y. Kim, Theodore S. Hong, Kevin M. Haigis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0178547

Alcohol-dysregulated microRNAs in hepatitis B virus-related hepatocellular carcinoma
Cited by: 16
Author(s): Hao Zheng, Angela E. Zou, Maarouf A. Saad, Xiao Qi Wang, James G. Kwok, Avinaash Korrapati, Pinxue Li, Tatiana Kisseleva, Jessica Wang‐Rodriguez, Weg M. Ongkeko
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0062070

A Texture Based Pattern Recognition Approach to Distinguish Melanoma from Non-Melanoma Cells in Histopathological Tissue Microarray Sections
Cited by: 19
Author(s): Elton Rexhepaj, Margrét Agnarsdóttir, Julia Bergman, Per-Henrík Edqvist, Michael Bergqvist, Mathias Uhlén, William M. Gallagher, Emma Lundberg, Fredrik Pontén
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0213678

Media composition modulates human embryonic stem cell morphology and may influence preferential lineage differentiation potential
Cited by: 10
Author(s): Linda Harkness, Xiaoli Chen, Marianne Gillard, Peter P. Gray, Anthony M. Davies
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0109372

Septin6 and Septin7 GTP Binding Proteins Regulate AP-3- and ESCRT-Dependent Multivesicular Body Biogenesis
Cited by: 21
Author(s): Sofia Traikov, Christoph Stange, Thomas Wassmer, Perrine Paul‐Gilloteaux, Jean Salamero, Graça Raposo, Bernard Hoflack
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0184330

A microfluidic renal proximal tubule with active reabsorptive function
Cited by: 54
Author(s): Else M. Vedula, José L. Alonso, M. Amin Arnaout, Joe Charest
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0080999

Multiplex Cytological Profiling Assay to Measure Diverse Cellular States
Cited by: 200
Author(s): Sigrún M. Gústafsdóttir, Vebjorn Ljosa, Katherine L Sokolnicki, Joshua Wilson, Deepika Walpita, Melissa M. Kemp, Kathleen Petri Seiler, Hyman A. Carrel, Todd R. Golub, Stuart L. Schreiber, Paul A. Clemons, Anne E. Carpenter, Alykhan F. Shamji
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0064946

RNAi Screening in Primary Human Hepatocytes of Genes Implicated in Genome-Wide Association Studies for Roles in Type 2 Diabetes Identifies Roles for CAMK1D and CDKAL1, among Others, in Hepatic Glucose Regulation
Cited by: 17
Author(s): Steven Haney, Juan Zhao, Shiwani Tiwari, Kurt Eng, Lin T. Guey, Eric Tien
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0145081

Tools for Single-Cell Kinetic Analysis of Virus-Host Interactions
Cited by: 34
Author(s): Jay W. Warrick, Andrea C. Timm, Adam D. Swick, John Yin
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0126088

DNA Damage Signaling Is Induced in the Absence of Epstein—Barr Virus (EBV) Lytic DNA Replication and in Response to Expression of ZEBRA
Cited by: 20
Author(s): Ruth Wang’ondu, Stuart Teal, Richard Park, Lee Heston, Henri Jacques Delecluse, George Miller
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0091744

High Content Image Analysis Identifies Novel Regulators of Synaptogenesis in a High-Throughput RNAi Screen of Primary Neurons
Cited by: 38
Author(s): Thomas J.F. Nieland, David J. Logan, Jessica L. Saulnier, Daniel D. Lam, Clarence Dan Johnson, David E. Root, Anne E. Carpenter, Bernardo L. Sabatini
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0233647

Automated image analysis of stained cytospins to quantify Schwann cell purity and proliferation
Cited by: 4
Author(s): Tamara Weiss, Lorenz Semmler, Flavia Millesi, Anda Mann, Maximilian Haertinger, Manuel Salzmann, Christine Radtke
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0132186

Protection by the NO-Donor SNAP and BNP against Hypoxia/Reoxygenation in Rat Engineered Heart Tissue
Cited by: 6
Author(s): Anikó Görbe, Alexandra Eder, Zoltán V. Varga, János Pálóczi, Arne Hansen, Péter Ferdinándy, Thomas Eschenhagen
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0131370

Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects
Cited by: 32
Author(s): Shantanu Singh, Xiaoyun Wu, Vebjorn Ljosa, Mark‐Anthony Bray, Federica Piccioni, David E. Root, John G. Doench, Jesse S. Boehm, Anne E. Carpenter
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0108777

An Image-Based Genetic Assay Identifies Genes in T1D Susceptibility Loci Controlling Cellular Antiviral Immunity in Mouse
Cited by: 6
Author(s): Juan Liao, Humberto Jijon, Ira R. Kim, Gautam Goel, Aivi Doan, Harry Sokol, Hermann Bauer, Bernhard G. Herrmann, Kara G. Lassen, Ramnik J. Xavier
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0121653

The Effects of 1α, 25-dihydroxyvitamin D3 and Transforming Growth Factor-β3 on Bone Development in an Ex Vivo Organotypic Culture System of Embryonic Chick Femora
Cited by: 10
Author(s): Emma L. Smith, Hassan Rashidi, Janos M. Kanczler, Kevin M. Shakesheff, Richard O.C. Oreffo
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0035157

Protein Signature of Lung Cancer Tissues
Cited by: 79
Author(s): Michael R. Mehan, Deborah Ayers, Derek Thirstrup, Wei Xiong, Rachel Ostroff, Edward N. Brody, Jeffrey J. Walker, Larry Gold, Thale C. Jarvis, Nebojša Janjić, Geoffrey S. Baird, Sheri K. Wilcox
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0161466

Controlling Growth and Osteogenic Differentiation of Osteoblasts on Microgrooved Polystyrene Surfaces
Cited by: 30
Author(s): Lingyun Sun, Daniel de Melo Pereira, Qibao Wang, David Barata, Roman Truckenmüller, Zhaoyuan Li, Xin Xu, Pamela Habibović
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0013111

Xenopus Egg Extracts Increase Dynamics of Histone H1 on Sperm Chromatin
Cited by: 5
Author(s): Benjamin Freedman, Kelly E. Miller, Rebecca Heald
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0055242

Effect of Gum Arabic on Oxidative Stress and Inflammation in Adenine–Induced Chronic Renal Failure in Rats
Cited by: 108
Author(s): Badreldin H. Ali, Isehaq Al-Husseni, Sumyia Beegam, Ahmed Al-Shukaili, Abderrahim Nemmar, Simone Schierling, Nina Queisser, Nicole Schupp
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0223110

Interocular symmetry, intraobserver repeatability, and interobserver reliability of cone density measurements in the 13-lined ground squirrel
Cited by: 2
Author(s): Benjamin S. Sajdak, Alexander E Salmon, Rachel E Linderman, Jenna Cava, Heather Heitkotter, Joseph Carroll
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0226757

Autofluorescence spectroscopy in redox monitoring across cell confluencies
Cited by: 12
Author(s): Derrick Yong, Ahmad Amirul Abdul Rahim, Chaw Su Thwin, Sixun Chen, Weichao Zhai, May Win Naing
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0134714

SPARC Controls Melanoma Cell Plasticity through Rac1
Cited by: 14
Author(s): Edgardo Salvatierra, Mariano J. Alvarez, Claudia C. Leishman, Elvia Rivas Baquero, Viviana P. Lutzky, Eduardo Chuluyan, Osvaldo L. Podhajcer
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0236397

A high-throughput imaging and quantification pipeline for the EVOS imaging platform
Cited by: 4
Author(s): Stefan D. Klimaj, Yamhilette Licon-Munoz, Katelyn Del Toro, William C. Hines
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0028694

Multi-Parametric Analysis and Modeling of Relationships between Mitochondrial Morphology and Apoptosis
Cited by: 44
Author(s): Y. Reis, Martí Bernardo-Faura, Daniela Richter, Thomas Wolf, Benedikt Brors, Anne Hamacher-Brady, Roland Eils, Nathan R. Brady
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0007339

An Intermittent Live Cell Imaging Screen for siRNA Enhancers and Suppressors of a Kinesin-5 Inhibitor
Cited by: 22
Author(s): Melody Tsui, Tiao Xie, James D. Orth, Anne E. Carpenter, Stewart Rudnicki, Suejong Kim, Caroline E. Shamu, Timothy J. Mitchison
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0006822

Image-Based Assessment of Growth and Signaling Changes in Cancer Cells Mediated by Direct Cell-Cell Contact
Cited by: 7
Author(s): Peter LaPan, Jing Zhang, Andrew Hill, Ying Zhang, Robert J. Martinez, Steven Haney
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0198262

Enterobacter cloacae administration induces hepatic damage and subcutaneous fat accumulation in high-fat diet fed mice
Cited by: 19
Author(s): Anniina Keskitalo, Eveliina Munukka, Raine Toivonen, Maija Hollmén, Heikki Kainulainen, Pentti Huovinen, Sirpa Jalkanen, Satu Pekkala
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0006946

Synthetic Morphology Using Alternative Inputs
Cited by: 11
Author(s): Hiromasa Tanaka, Tongxun Yi
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0213452

Emergent heterogeneity in putative mesenchymal stem cell colonies: Single-cell time lapsed analysis
Cited by: 24
Author(s): Deena A. Rennerfeldt, Joana S. Raminhos, Samantha M Leff, Pristinavae Manning, Krystyn J. Van Vliet
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0141300

Morphological Heterogeneity and Attachment of Phaeobacter inhibens
Cited by: 23
Author(s): Einat Segev, Adèle Tellez, Hera Vlamakis, Roberto Kolter
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0203956

SYBR Gold dye enables preferential labelling of mitochondrial nucleoids and their time-lapse imaging by structured illumination microscopy
Cited by: 17
Author(s): Visnja Jevtic, Petra Kindle, Sergiy V. Avilov
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0048943

Lentiviral Transduction of CD34+ Cells Induces Genome-Wide Epigenetic Modifications
Cited by: 20
Author(s): Yuriko Yamagata, Véronique Parietti, Daniel Stockholm, Guillaume Corre, Catherine Poinsignon, Nizar Touleimat, Damien Delafoy, Céline Besse, Jörg Tost, Anne Galy, Andràs Páldi
Software Mentions: 1
Published: over 12 years ago