Ecosyste.ms: Papers

10.1016/j.bpj.2018.03.037

Collective Cell Behavior in Mechanosensing of Substrate Thickness
Cited by: 33
Author(s): Camelia G. Tusan, Yu Hin Man, Hoda Zarkoob, D. Johnston, Orestis G. Andriotis, Philipp J. Thurner, Shoufeng Yang, Edward A. Sander, Eileen Gentleman, Bram G. Sengers, Nicholas D. Evans
Software Mentions: 1
Published: over 6 years ago

10.1089/biores.2019.0054

<i>In Vitro</i> Regeneration of Decellularized Pig Esophagus Using Human Amniotic Stem Cells
Cited by: 9
Author(s): Nikhil B. Nayakawde, Ketaki Methe, Debashish Banerjee, Malin Berg, Goditha U. Premaratne, Michael Olausson
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41408-021-00531-2

High-throughput drug screening identifies the ATR-CHK1 pathway as a therapeutic vulnerability of CALR mutated hematopoietic cells
Cited by: 1
Author(s): Ruochen Jia, Leon Kutzner, Anna Koren, Kathrin Runggatscher, Peter Marynen, André C. Müller, Michael Schuster, Christoph Bock, Joanna I. Loizou, Stefan Kubicek, Róbert Královics
Software Mentions: 1
Published: over 3 years ago

10.1038/bcj.2014.37

Notch pathway inhibition controls myeloma bone disease in the murine MOPC315.BM model
Cited by: 38
Author(s): Rolf Schwarzer, Nils Nickel, Julia Godau, Bettina M. Willie, Georg N. Duda, Rolf Schwarzer, Branko Cirovic, Achim Leutz, Rudolf A. Manz, Bjarne Bogen, Bernd Dörken, Franziska Jundt
Software Mentions: 1
Published: over 10 years ago

10.1038/s41416-020-1018-0

Suppressive myeloid cells are expanded by biliary tract cancer-derived cytokines in vitro and associate with aggressive disease
Cited by: 4
Author(s): Michael B. Ware, Mohammad Y. Zaidi, Jennifer Yang, Michael K. Turgeon, Alyssa M. Krasinskas, Thomas A. Mace, Kaitlin Keenan, Matthew R. Farren, Amanda N. Ruggieri, Yiman Li, Chao Zhang, Zhengjia Chen, Gregory S. Young, Omar Elnaggar, Zheng Che, Shishir K. Maithel, Tanios Bekaii‐Saab, Bassel F. El‐Rayes, Gregory B. Lesinski
Software Mentions: 1
Published: over 4 years ago

10.1038/s41416-020-0871-1

Clinical utility of serial analysis of circulating tumour cells for detection of minimal residual disease of metastatic nasopharyngeal carcinoma
Cited by: 13
Author(s): Josephine Mun‐Yee Ko, Varut Vardhanabhuti, Wai-Tong Ng, Ka-On Lam, Roger K.C. Ngan, Dora Lai-Wan Kwong, Victor Lee, Y H Lui, C. C. Yau, Chung-Kong Kwan, Wing-Sum Li, Stephen S.-T. Yau, Cheng Guo, Sheyne Sta Ana Choi, Lisa Chan Lei, Kenneth Chun-Ho Chan, Candy Chi-Shan Lam, Candy King-Chi Chan, Wei Dai, Pek‐Lan Khong, Maria Li Lung
Software Mentions: 1
Published: over 4 years ago

10.1038/s41416-020-01158-z

The RNA polymerase I transcription inhibitor CX-5461 cooperates with topoisomerase 1 inhibition by enhancing the DNA damage response in homologous recombination-proficient high-grade serous ovarian cancer
Cited by: 23
Author(s): Shunfei Yan, Jiachen Xuan, Natalie Brajanovski, Madeleine R. C. Tancock, Piyush B. Madhamshettiwar, Kaylene J. Simpson, Sarah Ellis, Jian Kang, Carleen Cullinane, Karen E. Sheppard, Katherine M. Hannan, Ross D. Hannan, Elaine Sanij, Richard B. Pearson, Keefe T. Chan
Software Mentions: 1
Published: about 4 years ago

10.1093/braincomms/fcab166

TDP-43 and FUS mislocalization in VCP mutant motor neurons is reversed by pharmacological inhibition of the VCP D2 ATPase domain
Cited by: 12
Author(s): Jasmine Harley, Cathleen Hagemann, Andrea Serio, Rickie Patani
Software Mentions: 1
Published: almost 4 years ago

10.1111/bpa.12937

Automated and unbiased discrimination of ALS from control tissue at single cell resolution
Cited by: 8
Author(s): Cathleen Hagemann, Giulia E. Tyzack, Doaa Taha, Helen Devine, Linda Greensmith, Jia Newcombe, Rickie Patani, Andrea Serio, Raphaëlle Luisier
Software Mentions: 1
Published: almost 4 years ago

10.3390/brainsci11020209

Generation of the Human Pluripotent Stem-Cell-Derived Astrocyte Model with Forebrain Identity
Cited by: 7
Author(s): Ulla Kaisa Peteri, Juho Pitkonen, Kagistia Hana Utami, Jere Paavola, Laurent Roybon, Mahmoud A. Pouladi, Maija Castrén
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00429-014-0787-8

Development of the blood–brain barrier within the paraventricular nucleus of the hypothalamus: influence of fetal glucocorticoid excess
Cited by: 20
Author(s): K. Frahm, Stuart A. Tobet
Software Mentions: 1
Published: over 10 years ago

10.1590/1414-431X20175692

Long-term effects of human amniotic membrane in a rat model of biliary fibrosis
Cited by: 10
Author(s): Luciana Barros Sant’Anna, Fábio Sândoli de Brito, Paulo Roxo Barja, Mariana C. Nicodemo
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13058-014-0510-y

A co-culture genome-wide RNAi screen with mammary epithelial cells reveals transmembrane signals required for growth and differentiation
Cited by: 25
Author(s): Angela Burleigh, Steven McKinney, Jazmine Brimhall, Damian Yap, Peter Eirew, Steven S.S. Poon, Viola Ng, Adrian Wan, Leah M Prentice, Lois A. Annab, J. Carl Barrett, Carlos Caldas, Connie J. Eaves, Samuel Aparicio
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13058-017-0815-8

Zoledronic acid alters hematopoiesis and generates breast tumor-suppressive bone marrow cells
Cited by: 35
Author(s): Jessalyn M. Ubellacker, Marie-Therese Haider, Molly J. DeCristo, Gloria Allocca, Nicola J. Brown, Daniel P. Silver, Ingunn Holen, Sandra S. McAllister
Software Mentions: 1
Published: over 7 years ago

10.1007/s00223-021-00852-1

Quantitative Evaluation of Osteocyte Morphology and Bone Anisotropic Extracellular Matrix in Rat Femur
Cited by: 24
Author(s): Takuya Ishimoto, Keita Kawahara, Aira Matsugaki, Hiroshi Kamioka, Takayoshi Nakano
Software Mentions: 1
Published: over 3 years ago

10.1002/cam4.2802

Deep learning pathological microscopic features in endemic nasopharyngeal cancer: Prognostic value and protentional role for individual induction chemotherapy
Cited by: 15
Author(s): Kuiyuan Liu, Wei‐Xiong Xia, Meng‐Yun Qiang, Xi Chen, Jia Liu, Xiang Guo, Xing Lv
Software Mentions: 1
Published: almost 5 years ago

10.1016/S2352-3026(17)30208-9

Image-based ex-vivo drug screening for patients with aggressive haematological malignancies: interim results from a single-arm, open-label, pilot study
Cited by: 124
Author(s): Berend Snijder, Gregory I. Vladimer, Nikolaus Krall, Katsuhiro Miura, Ann-Sofie Schmolke, Christoph Kornauth, Oscar Lopez de la Fuente, Hye-Soo Choi, Emiel van der Kouwe, Sinan Gültekin, Lukas Kazianka, Johannes W. Bigenzahn, Gregor Hoermann, Nicole Prutsch, Olaf Merkel, Anna Ringler, Monika Sabler, Georg Jeryczynski, Marius E. Mayerhoefer, Ingrid Simonitsch‐Klupp, Katharina Ocko, F. X. Felberbauer, Leonhard Müllauer, Gerald W. Prager, Belgin Korkmaz, Lukas Kenner, Wolfgang R. Sperr, Róbert Královics, Heinz Gisslinger, Peter Valent, Stefan Kubicek, Ulrich Jäger, Philipp B. Staber, Giulio Superti‐Furga
Software Mentions: 1
Published: almost 7 years ago

10.1021/acs.langmuir.1c00693

Process Window for Seeded Growth of Arrays of Quasi-Spherical Substrate-Supported Au Nanoparticles
Cited by: 2
Author(s): Björn Landeke-Wilsmark, Leif Nyholm, Carl Hägglund
Software Mentions: 1
Published: over 3 years ago

10.26508/lsa.201800218

Location-dependent maintenance of intrinsic susceptibility to mTORC1-driven tumorigenesis
Cited by: 8
Author(s): Gabrielle V. Rushing, Asa Brockman, Madelyn K. Bollig, Nalin Leelatian, Bret C. Mobley, Jonathan M. Irish, Kevin C. Ess, Changlin Fu, Rebecca A. Ihrie
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000980

Cyclin A2 localises in the cytoplasm at the S/G2 transition to activate PLK1
Cited by: 24
Author(s): Helena Silva Cascales, Kamila Burdová, Anna Middleton, Vladislav Kuzin, Erik Müllers, Henriette Stoy, Laura Baranello, Libor Macůrek, Arne Lindqvist
Software Mentions: 1
Published: almost 4 years ago

10.26508/lsa.201800255

The hypoxia-response pathway modulates RAS/MAPK–mediated cell fate decisions in<i>Caenorhabditis elegans</i>
Cited by: 12
Author(s): Sabrina Maxeiner, Janine Grolleman, Tobias Schmid, J.E. Kammenga, Alex Hajnal
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.201900601

Oncogenic <i>ALK</i>^{<i>F1174L</i>} drives tumorigenesis in cutaneous squamous cell carcinoma
Cited by: 4
Author(s): Marco Gualandi, Maria Iorio, Olivia Engeler, André Serra-Roma, Giuseppe Gasparre, Johannes H. Schulte, Daniel Hohl, Olga Shakhova
Software Mentions: 1
Published: over 4 years ago

10.26508/lsa.201800059

β-Tubulin carboxy-terminal tails exhibit isotype-specific effects on microtubule dynamics in human gene-edited cells
Cited by: 16
Author(s): Amelia L. Parker, Wee Siang Teo, Elvis Pandžić, Juan Jesus Vicente, Joshua A. McCarroll, Linda Wordeman, Maria Kavallaris
Software Mentions: 1
Published: over 6 years ago

10.1007/s00335-014-9522-2

3-Dimensional histological reconstruction and imaging of the murine pancreas
Cited by: 4
Author(s): Steven L. Ciciotte, Mark D. Lessard, Ellen C. Akeson, Elizabeth M. Cameron, Timothy M. Stearns, James M. Denegre, Jesús Ruberte, Karen L. Svenson
Software Mentions: 1
Published: over 10 years ago

10.3390/md14090158

Hierridin B Isolated from a Marine Cyanobacterium Alters VDAC1, Mitochondrial Activity, and Cell Cycle Genes on HT-29 Colon Adenocarcinoma Cells
Cited by: 28
Author(s): Sara Freitas, Rosário Martíns, Margarida Costa, Pedro N. Leão, Rui Vitorino, Vı́tor Vasconcelos, Ralph Urbatzka
Software Mentions: 1
Published: about 8 years ago

10.3390/md17040229

Chlorophyll Derivatives from Marine Cyanobacteria with Lipid-Reducing Activities
Cited by: 26
Author(s): Sara Freitas, Natália Gonçalves Silva, Maria Lígia Sousa, Tiago Ribeiro, Filipa Rosa, Pedro N. Leão, Vı́tor Vasconcelos, Mariana Reis, Ralph Urbatzka
Software Mentions: 1
Published: over 5 years ago

10.3390/md17040243

Broad-Spectrum Anti-Adhesive Coating Based on an Extracellular Polymer from a Marine Cyanobacterium
Cited by: 13
Author(s): Bruna Costa, Rita Mota, Paula Parreira, Paula Tamagnini, M. Cristina L. Martins, Fabíola Costa
Software Mentions: 1
Published: over 5 years ago

10.3390/md18020088

The Marine Seagrass Halophila stipulacea as a Source of Bioactive Metabolites against Obesity and Biofouling
Cited by: 15
Author(s): Sawssen Bel Mabrouk, Mariana Reis, Maria Lígia Sousa, Tiago Ribeiro, Joana R. Almeida, Sandra Pereira, Jorge T. Antunes, Filipa Rosa, Vı́tor Vasconcelos, Lotfi Achour, Adnane Kacem, Ralph Urbatzka
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.mtbio.2020.100051

Additive manufactured, highly resilient, elastic, and biodegradable poly(ester)urethane scaffolds with chondroinductive properties for cartilage tissue engineering
Cited by: 18
Author(s): Sandra Camarero‐Espinosa, Clarissa Tomasina, Andrea Roberto Calore, Lorenzo Moroni
Software Mentions: 1
Published: over 4 years ago

10.3390/medicina56010024

Challenges and Opportunities in Preclinical Research of Synthetic Cannabinoids for Pain Therapy
Cited by: 16
Author(s): Bogdan Ionel Tamba, Gabriela Dumitrița Stanciu, Cristina M. Uritu, Elena Rezuş, Raluca Ştefănescu, Cosmin Teodor Mihai, Andrei Luca, Gabriela Rusu-Zota, Maria‐Magdalena Leon‐Constantin, Elena Cojocaru, Bogdan Gafton, Teodora Alexa-Stratulat
Software Mentions: 1
Published: almost 5 years ago

10.1118/1.4966032

A preclinical microbeam facility with a conventional x-ray tube
Cited by: 19
Author(s): Stefan Bartzsch, Craig Cummings, Stephan Eismann, Uwe Oelfke
Software Mentions: 1
Published: about 8 years ago

10.3390/metabo10060226

Restoration of Physiological Levels of Uric Acid and Ascorbic Acid Reroutes the Metabolism of Stored Red Blood Cells
Cited by: 12
Author(s): Manon Bardyn, Jingkui Chen, Michaël Dussiot, David Crettaz, L Schmid, Emmanuel Längst, Pascal Amireault, Jean‐Daniel Tissot, Mario Jolicœur, Michel Prudent
Software Mentions: 1
Published: over 4 years ago

10.3390/metabo11060344

Hyperosmolarity Triggers the Warburg Effect in Chinese Hamster Ovary Cells and Reveals a Reduced Mitochondria Horsepower
Cited by: 6
Author(s): Jorgelindo da Veiga Moreira, Lenny De Staercke, Pablo César Martínez-Basilio, Sandrine Gauthier-Thibodeau, Léa Montégut, Laurent Schwartz, Mario Jolicœur
Software Mentions: 1
Published: over 3 years ago

10.1088/2050-6120/aae6f8

Development of a fluorescence-based cellular apoptosis reporter
Cited by: 4
Author(s): Lucy A Balderstone, John C. Dawson, Arkadiusz Welman, Alan Serrels, Stephen R. Wedge, Valerie G. Brunton
Software Mentions: 1
Published: about 6 years ago

10.1016/j.mex.2015.02.007

Determination of collagen content within picrosirius red stained paraffin-embedded tissue sections using fluorescence microscopy
Cited by: 122
Author(s): Benjamin Vogel, Hanna Siebert, Ulrich Hofmann, Stefan Frantz
Software Mentions: 1
Published: almost 10 years ago

10.3390/mi10110781

Automated Analysis of Platelet Aggregation on Cultured Endothelium in a Microfluidic Chip Perfused with Human Whole Blood
Cited by: 9
Author(s): Hugo J. Albers, Robert Passier, Albert van den Berg, Andries D. van der Meer
Software Mentions: 1
Published: about 5 years ago

10.3390/mi12050550

Evaluation of the Effects of Solvents Used in the Fabrication of Microfluidic Devices on Cell Cultures
Cited by: 6
Author(s): Xiaopeng Wen, Seiichiro Takahashi, Kenji Hatakeyama, Ken‐ichiro Kamei
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms9020366

Streptococcus suis Induces Expression of Cyclooxygenase-2 in Porcine Lung Tissue
Cited by: 2
Author(s): Muriel Dresen, Josephine Schenk, Yenehiwot Berhanu Weldearegay, Désirée Vötsch, Wolfgang Baumgärtner, Peter Valentin‐Weigand, Andreas Nerlich
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms9010156

Automation of Infectious Focus Assay for Determination of Filovirus Titers and Direct Comparison to Plaque and TCID50 Assays
Cited by: 16
Author(s): Patrick T. Keiser, Manu Anantpadma, Hilary Staples, Ricardo Carrión, Robert A. Davey
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41378-018-0020-7

Shaped 3D microcarriers for adherent cell culture and analysis
Cited by: 42
Author(s): Chueh‐Yu Wu, Daniel Stoecklein, Aditya Kommajosula, Jonathan Lin, Keegan Owsley, Baskar Ganapathysubramanian, Dino Di Carlo
Software Mentions: 1
Published: over 6 years ago

10.1186/1759-8753-1-13

Creation of a novel telomere-cutting endonuclease based on the EN domain of telomere-specific non-long terminal repeat retrotransposon, TRAS1
Cited by: 11
Author(s): Kazutoshi Yoshitake, Hideyuki Aoyagi, Haruhiko Fujiwara
Software Mentions: 1
Published: over 14 years ago

10.1186/s13229-018-0228-2

Characterization and structure-activity relationships of indenoisoquinoline-derived topoisomerase I inhibitors in unsilencing the dormant Ube3a gene associated with Angelman syndrome
Cited by: 26
Author(s): Hyeong-Min Lee, Ellen P. Clark, M. Bram Kuijer, Mary Cushman, Yves Pommier, Benjamin D. Philpot
Software Mentions: 1
Published: over 6 years ago

10.1186/s13041-021-00848-w

Endosomal traffic and glutamate synapse activity are increased in VPS35 D620N mutant knock-in mouse neurons, and resistant to LRRK2 kinase inhibition
Cited by: 3
Author(s): Chelsie Kadgien, Anusha Kamesh, Austen J. Milnerwood
Software Mentions: 1
Published: about 3 years ago

10.1186/s13041-021-00845-z

GDF11 expressed in the adult brain negatively regulates hippocampal neurogenesis
Cited by: 13
Author(s): Brittany A Mayweather, Sean M. Buchanan, Lee L. Rubin
Software Mentions: 1
Published: about 3 years ago

10.1186/s13041-020-00641-1

A microscopy-based small molecule screen in primary neurons reveals neuroprotective properties of the FDA-approved anti-viral drug Elvitegravir
Cited by: 3
Author(s): Simon F. Merz, C. Peter Bengtson, Clara Tepohl, Anna M. Hagenston, Hilmar Bading, Carlos Bas‐Orth
Software Mentions: 1
Published: about 4 years ago

10.1186/s12943-018-0764-6

Nischarin regulates focal adhesion and Invadopodia formation in breast cancer cells
Cited by: 26
Author(s): Mazvita Maziveyi, Shaohong Dong, Somesh Baranwal, Suresh K. Alahari
Software Mentions: 1
Published: almost 7 years ago

10.1186/1476-4598-13-208

Induction of integrin α2 in a highly bone metastatic human prostate cancer cell line: roles of RANKL and AR under three-dimensional suspension culture
Cited by: 22
Author(s): Shabnam Ziaee, Leland W.K. Chung
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.molcel.2018.08.043

POLE3-POLE4 Is a Histone H3-H4 Chaperone that Maintains Chromatin Integrity during DNA Replication
Cited by: 82
Author(s): Roberto Bellelli, Ondrej Beláň, V.E. Pye, Camille Clément, Sarah Maslen, J. Mark Skehel, Peter Cherepanov, Geneviève Almouzni, Simon J. Boulton
Software Mentions: 1
Published: about 6 years ago

10.3390/molecules22091516

Ginsenoside Rg3 Prevents Oxidative Stress-Induced Astrocytic Senescence and Ameliorates Senescence Paracrine Effects on Glioblastoma
Cited by: 25
Author(s): Jingang Hou, Sun Chang Kim, Chang‐Keun Sung, Chulhee Choi
Software Mentions: 1
Published: about 7 years ago

10.3390/molecules26185442

Uptake of Cell-Penetrating Peptide RL2 by Human Lung Cancer Cells: Monitoring by Electron Paramagnetic Resonance and Confocal Laser Scanning Microscopy
Cited by: 9
Author(s): Sergey S Ovcherenko, Olga Chinak, А. В. Чечушков, Sergey A. Dobrynin, Igor A. Kirilyuk, Olesya A. Krumkacheva, Vladimír Richter, Elena G. Bagryanskaya
Software Mentions: 1
Published: about 3 years ago

10.3390/molecules24183244

A Secreted Phospholipase A2 Induces Formation of Smooth Muscle Foam Cells Which Transdifferentiate to Macrophage-Like State
Cited by: 16
Author(s): Karina Cristina Giannotti, Sönke Weinert, Mariana Nascimento Viana, Elbio Leiguez, Thaís L.S. Araujo, Francisco Rafael Martins Laurindo, Bruno Lomonte, Ruediger C. Braun‐Dullaeus, Catarina Teixeira
Software Mentions: 1
Published: about 5 years ago

10.3390/molecules25040836

Rosmarinic Acid as a Candidate in a Phenotypic Profiling Cardio-/Cytotoxicity Cell Model Induced by Doxorubicin
Cited by: 7
Author(s): Qiao Zhang, Jing Li, Sha Peng, Yanling Zhang, Yanjiang Qiao
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.molmet.2018.11.004

Hypothalamic POMC or MC4R deficiency impairs counterregulatory responses to hypoglycemia in mice
Cited by: 14
Author(s): Benjamin P. Tooke, Hui Yu, Jeffrey Adams, Graham L. Jones, Talisha Sutton-Kennedy, Lakshmi Mundada, Nathan Qi, Malcolm J. Low, Kavaljit H. Chhabra
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.molmet.2015.02.003

Mice lacking neutral amino acid transporter B0AT1 (Slc6a19) have elevated levels of FGF21 and GLP-1 and improved glycaemic control
Cited by: 67
Author(s): Yang Jiang, Adam J. Rose, Tjeerd Sijmonsma, Angelika Bröer, Anja Pfenninger, Stephan Herzig, Dieter Schmoll, Stefan Bröer
Software Mentions: 1
Published: over 9 years ago

10.1007/s12035-017-0834-6

A Novel Ultrasensitive In Situ Hybridization Approach to Detect Short Sequences and Splice Variants with Cellular Resolution
Cited by: 49
Author(s): Larissa Erben, Min He, Annelies Laeremans, Emily Park, Andrés Buonanno
Software Mentions: 1
Published: almost 7 years ago

10.1002/1878-0261.12780

Distribution and prognostic significance of gluconeogenesis and glycolysis in lung cancer
Cited by: 47
Author(s): Elisabeth Smolle, Petra Leko, Elvira Stacher‐Priehse, Luka Brčić, Amin El‐Heliebi, Lilli Hofmann, Franz Quehenberger, Andelko Hrzenjak, Helmut Popper, Horst Olschewski, Katharina Leithner
Software Mentions: 1
Published: about 4 years ago

10.15252/msb.20198983

A solid‐phase transfection platform for arrayed <scp>CRISPR</scp> screens
Cited by: 7
Author(s): Özdemirhan Serçin, Sabine Reither, Paris Roidos, Nadja Ballin, Spyridon Palikyras, Anna Baginska, Katrin Rein, Marı́a Llamazares, Aliaksandr Halavatyi, Hauke Winter, Thomas Muley, Renata Z. Jurkowska, Amir Abdollahi, Frank T. Zenke, Beate Neumann, Balca R. Mardin
Software Mentions: 1
Published: almost 5 years ago

10.15252/msb.20188322

Tumor‐stroma interactions differentially alter drug sensitivity based on the origin of stromal cells
Cited by: 26
Author(s): Benjamin Landry, Thomas Leete, Ryan Richards, Peter Cruz‐Gordillo, Hannah Schwartz, Megan E. Honeywell, Gary Ren, Alyssa D. Schwartz, Shelly R. Peyton, Michael J. Lee
Software Mentions: 1
Published: over 6 years ago

10.15252/msb.20156458

Frequency modulation of <scp>ERK</scp> activation dynamics rewires cell fate
Cited by: 174
Author(s): Hyunryul Ryu, Minhwa Chung, Maciej Dobrzyński, Dirk Fey, Yannick Blum, Sung Sik Lee, Matthias Peter, Boris N. Kholodenko, Noo Li Jeon, Olivier Pertz
Software Mentions: 1
Published: about 9 years ago

10.15252/msb.20177551

Automated analysis of high‐content microscopy data with deep learning
Cited by: 212
Author(s): Oren Kraus, Ben T. Grys, Jimmy Ba, Yolanda T. Chong, Brendan J. Frey, Charles Boone, Brenda Andrews
Software Mentions: 1
Published: over 7 years ago

10.15252/msb.20177733

Cell‐specific responses to the cytokine <scp>TGF</scp> β are determined by variability in protein levels
Cited by: 51
Author(s): Jette Strasen, Uddipan Sarma, Marcel Jentsch, Stefan Bohn, Caibin Sheng, Daniel Horbelt, Petra Knaus, Stefan Legewie, Alexander Loewer
Software Mentions: 1
Published: almost 7 years ago

10.15252/msb.20198947

Temporal perturbation of ERK dynamics reveals network architecture of FGF2/MAPK signaling
Cited by: 28
Author(s): Yannick Blum, Jan Mikelson, Maciej Dobrzyński, Hyunryul Ryu, Marc‐Antoine Jacques, Noo Li Jeon, Mustafa Khammash, Olivier Pertz
Software Mentions: 1
Published: about 5 years ago

10.1038/s41385-021-00437-z

Human small intestinal infection by SARS-CoV-2 is characterized by a mucosal infiltration with activated CD8+ T cells
Cited by: 48
Author(s): Malte Lehmann, Kristina Allers, C Heldt, Jenny Meinhardt, Franziska Schmidt, Yasmina Rodríguez-Sillke, Désirée Kunkel, Michael Schümann, Chotima Böttcher, Christiane Stahl–Hennig∥, Sefer Elezkurtaj, Christian Bojarski, Helena Radbruch, Victor M. Corman, Thomas Schneider, Christoph Loddenkemper, Verena Moos, Carl Weidinger, Anja A. Kühl, Britta Siegmund
Software Mentions: 1
Published: about 3 years ago

10.3390/vetsci6020045

2,4-Thiazolidinedione in Well-Fed Lactating Dairy Goats: I. Effect on Adiposity and Milk Fat Synthesis
Cited by: 3
Author(s): Shana Jaaf, Fernanda Rosa, Misagh Moridi, J. S. Osorio, J. D. Lohakare, Erminio Trevisi, Shelby J. Filley, Gita Cherian, Charles T. Estill, Massimo Bionaz
Software Mentions: 1
Published: over 5 years ago

10.1080/21505594.2021.1964329

The ApoA-I mimetic peptide 4F attenuates in vitro replication of SARS-CoV-2, associated apoptosis, oxidative stress and inflammation in epithelial cells
Cited by: 9
Author(s): Theodoros Kelesidis, Sharma Madhav, Anton Petcherski, Cristelle Hugo, Ellen O’Connor, Nan W. Hultgren, Eleni Ritou, David Williams, Orian S. Shirihai, Srinivasa T. Reddy
Software Mentions: 1
Published: about 3 years ago

10.3390/v10040152

Identification of Ellagic Acid from Plant Rhodiola rosea L. as an Anti-Ebola Virus Entry Inhibitor
Cited by: 39
Author(s): Qinghua Cui, Ruikun Du, Manu Anantpadma, Adam Schafer, Lin Hou, Tian Jing-zhen, Robert A. Davey, Han Cheng, Lijun Rong
Software Mentions: 1
Published: over 6 years ago

10.3390/v10040202

Concepts in Light Microscopy of Viruses
Cited by: 40
Author(s): Robert Witte, Vardan Andriasyan, Fanny Georgi, Artur Yakimovich, Urs F. Greber
Software Mentions: 1
Published: over 6 years ago

10.3390/v10120678

Identification of Diaryl-Quinoline Compounds as Entry Inhibitors of Ebola Virus
Cited by: 20
Author(s): Qinghua Cui, Han Cheng, Rui Xiong, Gang Zhang, Ruikun Du, Manu Anantpadma, Robert A. Davey, Lijun Rong
Software Mentions: 1
Published: almost 6 years ago

10.3390/v12010012

The Zebrafish Xenograft Platform—A Novel Tool for Modeling KSHV-Associated Diseases
Cited by: 11
Author(s): Eric S. Pringle, Jaime Wertman, Nicole Melong, Andrew J Coombs, Andrew L. Young, David O’Leary, Chansey J. Veinotte, Carolyn A. Jost Robinson, Michael N. Ha, Graham Dellaire, Todd E. Druley, Craig McCormick, Jason N. Berman
Software Mentions: 1
Published: almost 5 years ago

10.3390/v12121423

Novel Broad-Spectrum Antiviral Inhibitors Targeting Host Factors Essential for Replication of Pathogenic RNA Viruses
Cited by: 20
Author(s): Marianna Tampere, Aleksandra Pettke, Cristiano Salata, Olov Wallner, Tobias Koolmeister, Armando Cázares‐Körner, Torkild Visnes, Maria C Hesselman, Elena Kunold, Elisée Wiita, Christina Kaldéren, Molly Lightowler, Ann‐Sofie Jemth, Janne Lehtiö, Åsa Rosenquist, Ulrika Warpman Berglund, Thomas Helleday, Alì Mirazimi, Rozbeh Jafari, Marjo-Riitta Puumalainen
Software Mentions: 1
Published: almost 4 years ago

10.3390/v13010037

Broadly Active Antiviral Compounds Disturb Zika Virus Progeny Release Rescuing Virus-Induced Toxicity in Brain Organoids
Cited by: 14
Author(s): Aleksandra Pettke, Marianna Tampere, Robin Pronk, Olov Wallner, Anna Falk, Ulrika Warpman Berglund, Thomas Helleday, Alì Mirazimi, Marjo-Riitta Puumalainen
Software Mentions: 1
Published: almost 4 years ago

10.3390/v13010036

Chloroquine and Sulfadoxine Derivatives Inhibit ZIKV Replication in Cervical Cells
Cited by: 4
Author(s): Audrien Alves Andrade de Souza, Lauana Ribas Torres, Lyana Rodrigues Pinto Lima Capobianco, Vanessa Salete de Paula, Cynthia Machado Cascabulho, Kelly Salomão, Maria da Glória Bonecini-Almeida, Maria de Lourdes G. Ferreira, Núbia Boechat, Luiz C. S. Pinheiro, Elen Mello de Souza
Software Mentions: 1
Published: almost 4 years ago

10.3390/v13020298

Heparan Sulfate Is a Cellular Receptor for Enteric Human Adenoviruses
Cited by: 9
Author(s): A. Rajan, Elin Palm, Fredrik Trulsson, Sarah Mundigl, Miriam Becker, B. David Persson, Lars Frängsmyr, Annasara Lenman
Software Mentions: 1
Published: almost 4 years ago

10.3390/v13071193

A Fluorescent Real-Time Plaque Assay Enables Single-Cell Analysis of Virus-Induced Cytopathic Effect by Live-Cell Imaging
Cited by: 3
Author(s): Jorge L. Arias-Arias, Eugenia Corrales-Aguilar, Rodrigo Mora-Rodríguez
Software Mentions: 1
Published: over 3 years ago

10.12688/wellcomeopenres.12469.2

Single-cell heterogeneity and cell-cycle-related viral gene bursts in the human leukaemia virus HTLV-1
Cited by: 81
Author(s): Martin Rafael Billman, David Rueda, Charles R. M. Bangham
Software Mentions: 1
Published: almost 7 years ago

10.1097/j.pain.0000000000000939

Paclitaxel-induced painful neuropathy is associated with changes in mitochondrial bioenergetics, glycolysis, and an energy deficit in dorsal root ganglia neurons
Cited by: 74
Author(s): Natalie A Duggett, Lisa A. Griffiths, Sarah J.L. Flatters
Software Mentions: 1
Published: over 7 years ago

10.3390/pathogens10010009

An In Vitro Cell Culture Model for Pyoverdine-Mediated Virulence
Cited by: 14
Author(s): Donghoon Kang, Natalia V. Kirienko
Software Mentions: 1
Published: almost 4 years ago

10.3390/pathogens9020144

Isolation of Acanthamoeba T5 from Water: Characterization of Its Pathogenic Potential, Including the Production of Extracellular Vesicles
Cited by: 7
Author(s): Lissette Retana Moreira, Daniel Vargas Ramírez, Fernando Gervilla Linares, Alexa Prescilla-Ledezma, Annette Vaglio Garro, Antonio Osuna, Jacob Morales, Elizabeth Abrahams Sandí
Software Mentions: 1
Published: over 4 years ago

10.3390/pathogens9080634

Combining Computed Tomography and Histology Leads to an Evolutionary Concept of Hepatic Alveolar Echinococcosis
Cited by: 8
Author(s): Johannes Grimm, A. Beck, Juliane Nell, Julian Schmidberger, Andreas Hillenbrand, Ambros Beer, Balázs Dezsényi, Rong Shi, Meinrad Beer, Peter Kern, Doris Henne‐Bruns, Wolfgang Kratzer, Peter Möller, Thomas Barth, Beate Gruener, Tilmann Graeter
Software Mentions: 1
Published: over 4 years ago

10.1016/j.patter.2020.100040

BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows
Cited by: 24
Author(s): Ulysse Rubens, Romain Mormont, Lassi Paavolainen, Volker Baecker, Benjamin Pavie, Leandro Aluisio Scholz, Gino Michiels, Martin Maška, Devrim Ünay, Graeme Ball, Renaud Hoyoux, Rémy Vandaele, Ofra Golani, Stefan G. Stanciu, Nataša Sladoje, Perrine Paul‐Gilloteaux, Raphaël Marée, Sébastien Tosi
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.4937

An inexpensive, customizable microscopy system for the automated quantification and characterization of multiple adherent cell types
Cited by: 4
Author(s): Vishwaratn Asthana, Yuqi Tang, Adam R. Ferguson, Pallavi Bugga, Anantratn Asthana, Emily Evans, Allen L. Chen, Brett S Stern, Rebekah A. Drezek
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.11829

Capturing and analyzing pattern diversity: an example using the melanistic spotted patterns of leopard geckos
Cited by: 5
Author(s): Tilmann Glimm, Maria A. Kiskowski, Nickolas Moreno, Ylenia Chiari
Software Mentions: 1
Published: about 3 years ago

10.7717/peerj.5789

Assessment of the kidney and lung as immune barriers and hematopoietic sites in the invasive apple snail <i>Pomacea canaliculata</i>
Cited by: 19
Author(s): Cristian Rodriguez, Guido I. Prieto, Israel A. Vega, Alfredo Castro-Vázquez
Software Mentions: 1
Published: about 6 years ago

10.3390/pharmaceutics13060893

Systemic Treatment with Nicotinamide Riboside Is Protective in Two Mouse Models of Retinal Ganglion Cell Damage
Cited by: 16
Author(s): Xian Zhang, Nan Zhang, Micah A Chrenek, Preston Girardot, Jiaxing Wang, Jana T Sellers, Eldon E. Geisert, Charles Brenner, John M. Nickerson, Jeffrey H Boatright, Ying Liu
Software Mentions: 1
Published: over 3 years ago

10.14814/phy2.14573

Spontaneous restoration of functional β‐cell mass in obese SM/J mice
Cited by: 4
Author(s): Mario A. Miranda, Caryn Carson, Celine L. St. Pierre, Juan F Macias-Velasco, Jing W. Hughes, Marcus Kunzmann, Heather Schmidt, Jessica P Wayhart, Heather A. Lawson
Software Mentions: 1
Published: about 4 years ago

10.1186/s13007-018-0298-3

MeioSeed: a CellProfiler-based program to count fluorescent seeds for crossover frequency analysis in Arabidopsis thaliana
Cited by: 5
Author(s): Niels van Tol, Martijn Rolloos, Peter van Loon, Bert J. van der Zaal
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.0060224

A Genome-Wide RNAi Screen to Dissect Centriole Duplication and Centrosome Maturation in Drosophila
Cited by: 217
Author(s): Jeroen Dobbelaere, Filipe Josué, Saskia J.E. Suijkerbuijk, Buzz Baum, Nicolas Tapon, Jordan W. Raff
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pbio.2006540

Comprehensive profiling of the STE20 kinase family defines features essential for selective substrate targeting and signaling output
Cited by: 31
Author(s): Chad J. Miller, Hua Lou, Craig D. Simpson, Bert van de Kooij, Byung Hak Ha, Oriana S. Fisher, Natasha L. Pirman, Titus J. Boggon, Jesse Rinehart, Michael B. Yaffe, Rune Linding, Benjamin E. Turk
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3001060

Ectoderm to mesoderm transition by down-regulation of actomyosin contractility
Cited by: 13
Author(s): Leily Kashkooli, David B. Rozema, Lina Espejo-Ramirez, Paul Lasko, François Fagotto
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pbio.3000340

Scientific Community Image Forum: A discussion forum for scientific image software
Cited by: 26
Author(s): Curtis Rueden, Jeanelle Ackerman, Ellen T. Arena, Jan Eglinger, Beth A. Cimini, Allen Goodman, Anne E. Carpenter, Kevin W. Eliceiri
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.1001758

Epigenetic Reprogramming of the Type III Interferon Response Potentiates Antiviral Activity and Suppresses Tumor Growth
Cited by: 51
Author(s): Siyuan Ding, William Khoury-Hanold, Akiko Iwasaki, Michael D. Robek
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pbio.2003127

Olig2 and Hes regulatory dynamics during motor neuron differentiation revealed by single cell transcriptomics
Cited by: 70
Author(s): Andreas Sagner, Zachary B. Gaber, Julien Delile, Jennifer H. Kong, D. Rousso, Caroline Alayne Pearson, Steven E. Weicksel, Manuela Melchionda, S. Neda Mousavy Gharavy, James Briscoe, Bennett G. Novitch
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pbio.2001655

Reduced insulin signaling maintains electrical transmission in a neural circuit in aging flies
Cited by: 21
Author(s): Hrvoje Augustin, Kieran McGourty, Marcus Allen, Sirisha Kudumala Madem, Jennifer Adcott, Fiona Kerr, Chi T. Wong, Alec Vincent, Tanja A. Godenschwege, Emmanuel Boucrot, Linda Partridge
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pbio.3000998

Seipin traps triacylglycerols to facilitate their nanoscale clustering in the endoplasmic reticulum membrane
Cited by: 47
Author(s): Xavier Prasanna, Veijo T. Salo, Shiqian Li, Katharina Ven, Helena Vihinen, Eija Jokitalo, Ilpo Vattulainen, Elina Ikonen
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pbio.2004644

Effective polyploidy causes phenotypic delay and influences bacterial evolvability
Cited by: 38
Author(s): Lei Sun, Helen K. Alexander, Balázs Bogos, Daniel J. Kiviet, Martin Ackermann, Sebastian Bonhoeffer
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3001263

A chemical screen for modulators of mRNA translation identifies a distinct mechanism of toxicity for sphingosine kinase inhibitors
Cited by: 3
Author(s): Alba Corman, Dimitris C. Kanellis, Patrycja Michalska, Maria Häggblad, Vanesa Lafarga, Jiří Bártek, Jordi Carreras-Puigvert, Óscar Fernández-Capetillo
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.3001277

Comprehensive glycoproteomics shines new light on the complexity and extent of glycosylation in archaea
Cited by: 7
Author(s): Stefan Schulze, Friedhelm Pfeiffer, Benjamin A. García, Mechthild Pohlschröder
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1003043

Chapter 17: Bioimage Informatics for Systems Pharmacology
Cited by: 25
Author(s): Fuhai Li, Zhimin Yin, Guangxu Jin, Hong Zhao, Stephen T.C. Wong
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pcbi.1007901

A systematic approach to decipher crosstalk in the p53 signaling pathway using single cell dynamics
Cited by: 11
Author(s): Fabian Konrath, Anna Mittermeier, Elena Cristiano, Jana Wolf, Alexander Loewer
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pcbi.1005985

A mechanistic pan-cancer pathway model informed by multi-omics data interprets stochastic cell fate responses to drugs and mitogens
Cited by: 45
Author(s): Mehdi Bouhaddou, Anne Marie Barrette, Ari Stern, Rick J. Koch, Matthew DiStefano, Eric A. Riesel, Leonardo D. Santos, Annie L. Tan, Alex E. Mertz, Marc R. Birtwistle
Software Mentions: 1
Published: over 6 years ago