pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.7554/eLife.41460

Genome-wide interrogation of extracellular vesicle biology using barcoded miRNAs
Cited by: 22
Author(s): Albert Lu, Paulina S. Wawro, David W. Morgens, Fernando Gutiérrez Pórtela, Michael C. Bassik, Suzanne R Pfeffer
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.57297

Eater cooperates with Multiplexin to drive the formation of hematopoietic compartments
Cited by: 9
Author(s): Gábor Csordás, Ferdi Grawe, Mirka Uhlířová
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.30510

Automated cell-type classification in intact tissues by single-cell molecular profiling
Cited by: 91
Author(s): Monica Nagendran, Daniel P. Riordan, Pehr B. Harbury, Tushar J. Desai
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.06029

The Rab6-regulated KIF1C kinesin motor domain contributes to Golgi organization
Cited by: 50
Author(s): Peter L. Lee, Maikke B. Ohlson, Suzanne R Pfeffer
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.60917

A prion accelerates proliferation at the expense of lifespan
Cited by: 10
Author(s): David M Garcia, E. Campbell, Christopher M. Jakobson, Mitsuhiro Tsuchiya, Ethan A Shaw, Acadia DiNardo, Matt Kaeberlein, Daniel F. Jarosz
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.07068

Phosphodiesterase 4D acts downstream of Neuropilin to control Hedgehog signal transduction and the growth of medulloblastoma
Cited by: 33
Author(s): Xuecai Ge, Ljiljana Milenković, Kaye Suyama, Tom A. Hartl, Teresa Purzner, Amy Winans, Tobias Meyer, Matthew P. Scott
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.37963

SLC6A14, an amino acid transporter, modifies the primary CF defect in fluid secretion
Cited by: 23
Author(s): Saumel Ahmadi, Sunny Xia, Yu‐Sheng Wu, Michelle Di Paola, Randolph Kissoon, Catherine Luk, Lin Fan, Kai Du, Johanna M. Rommens, Christine E. Bear
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.49817

TRF1 averts chromatin remodelling, recombination and replication dependent-break induced replication at mouse telomeres
Cited by: 23
Author(s): Rosa María Porreca, Emilia Herrera-Moyano, Eleni Skourti, Law P, Roser Gonzalez Franco, Alex Montoya, Peter Faull, Holger Kramer, Jean‐Baptiste Vannier
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.12790

Protein flexibility is required for vesicle tethering at the Golgi
Cited by: 58
Author(s): Pak-yan Patricia Cheung, Charles Limouse, Hideo Mabuchi, Suzanne R Pfeffer
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.30473

Rapid DNA replication origin licensing protects stem cell pluripotency
Cited by: 80
Author(s): Jacob P. Matson, Raluca Dumitru, Philip Coryell, Ryan M. Baxley, Weili Chen, Kirk Twaroski, Beau R. Webber, Jakub Tolar, Anja‐Katrin Bielinsky, Jeremy E. Purvis, Jeanette Gowen Cook
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.32490

Lymphatic endothelium stimulates melanoma metastasis and invasion via MMP14-dependent Notch3 and β1-integrin activation
Cited by: 29
Author(s): Pirita Pekkonen, Sanni Alve, Giuseppe Balistreri, Silvia Gramolelli, Olga Tatti-Bugaeva, Ilkka Paatero, Otso Niiranen, Krista Tuohinto, Nina Perälä, Adewale Taiwo, Nadezhda Zinovkina, Pauliina Repo, Katherine Icay, Johanna Ivaska, Pipsa Saharinen, Sampsa Hautaniemi, Kaisa Lehti, Päivi M. Ojala
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.03939

Kinetic competition during the transcription cycle results in stochastic RNA processing
Cited by: 177
Author(s): Antoine Coulon, Matthew L. Ferguson, Valeria de Turris, Murali Palangat, Carson C. Chow, Daniel R. Larson
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.11880

Ceapins inhibit ATF6α signaling by selectively preventing transport of ATF6α to the Golgi apparatus during ER stress
Cited by: 104
Author(s): Ciara M Gallagher, Peter Walter
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.11878

Ceapins are a new class of unfolded protein response inhibitors, selectively targeting the ATF6α branch
Cited by: 136
Author(s): Ciara M Gallagher, Carolina Garri, Erica L. Cain, Kenny Kean‐Hooi Ang, Christopher G. Wilson, Steven Chen, Brian R. Hearn, Priyadarshini Jaishankar, Andrés Aranda-Díaz, Michelle R. Arkin, Adam R. Renslo, Peter Walter
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.46997

TLR induces reorganization of the IgM-BCR complex regulating murine B-1 cell responses to infections
Cited by: 32
Author(s): Hannah P Savage, Kathrin Kläsener, Fauna Leah Smith, Zheng Luo, Michael Reth, Nicole Baumgarth
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.59770

Alpha-satellite RNA transcripts are repressed by centromere–nucleolus associations
Cited by: 43
Author(s): Leah Bury, Brittania Moodie, Jimmy Ly, Liliana S. McKay, Karen H. Miga, Iain M. Cheeseman
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.67926

Role of BRCA2 DNA-binding and C-terminal domain in its mobility and conformation in DNA repair
Cited by: 15
Author(s): Maarten W. Paul, Arshdeep Sidhu, Yongxin Liang, Sarah E van Rossum-Fikkert, Hanny Odijk, Alex N. Zelensky, Roland Kanaar, Claire Wyman
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.31037

YAP and TAZ regulate adherens junction dynamics and endothelial cell distribution during vascular development
Cited by: 168
Author(s): Filipa Neto, Alexandra Klaus-Bergmann, Yu Ting Ong, Silvanus Alt, Anne-Clémence Vion, Anna Szymborska, Joana Rita Carvalho, Irene Hollfinger, Eireen Bartels-Klein, Cláudio A. Franco, Michael Potente, Holger Gerhardt
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.25681

Elastic force restricts growth of the murine utricle
Cited by: 26
Author(s): Ksenia Gnedeva, Adrián Jacobo, Joshua D. Salvi, Aleksandra A. Petelski, A. J. Hudspeth
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.55013

Spatially compartmentalized phase regulation of a Ca2+-cAMP-PKA oscillatory circuit
Cited by: 25
Author(s): Brian Tenner, Michael Getz, Brian Ross, Donya Ohadi, Christopher H. Bohrer, Eric C. Greenwald, Sohum Mehta, Jie Xiao, Padmini Rangamani, Jin Zhang
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.64251

Time-resolved phosphoproteomics reveals scaffolding and catalysis-responsive patterns of SHP2-dependent signaling
Cited by: 13
Author(s): Vidyasiri Vemulapalli, Lily A. Chylek, Alison R. Erickson, Anamarija Pfeiffer, Khal-Hentz Gabriel, Jonathan R. LaRochelle, Kartik Subramanian, Ruili Cao, Kimberley Stegmaier, Morvarid Mohseni, Matthew J. LaMarche, Michael G. Acker, Peter K. Sorger, Steven P. Gygi, Stephen C. Blacklow
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.52687

Squalene emulsion-based vaccine adjuvants stimulate CD8 T cell, but not antibody responses, through a RIPK3-dependent pathway
Cited by: 39
Author(s): Eui Ho Kim, Matthew C. Woodruff, L. A. Grigoryan, Bárbara Maier, Song Hee Lee, Pratyusha Mandal, Mario Cortese, Muktha S. Natrajan, Rajesh Ravindran, Huailiang Ma, Miriam Mérad, Alexander D. Gitlin, Edward S. Mocarski, Joshy Jacob, Bali Pulendran
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.23268

Copy-number and gene dependency analysis reveals partial copy loss of wild-type SF3B1 as a novel cancer vulnerability
Cited by: 63
Author(s): Brenton R. Paolella, William J. Gibson, Laura M. Urbanski, John A. Alberta, Travis I. Zack, Pratiti Bandopadhayay, Caitlin A. Nichols, Pankaj K. Agarwalla, Meredith S. Brown, Rebecca Lamothe, Yanke Yu, Peter S. Choi, Esther A. Obeng, Dirk Heckl, Guo Wei, Belinda Wang, Aviad Tsherniak, Francisca Vázquez, Barbara A. Weir, David E. Root, Glenn S. Cowley, Sara J. Buhrlage, Charles D. Stiles, Benjamin L. Ebert, William C. Hahn, Robin Reed, Rameen Beroukhim
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.08931

Digital signaling decouples activation probability and population heterogeneity
Cited by: 58
Author(s): Ryan Kellogg, Chengzhe Tian, Tomasz Lipniacki, Stephen R. Quake, Savaş Tay
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.49683

Improving drug discovery using image-based multiparametric analysis of the epigenetic landscape
Cited by: 16
Author(s): Chen Farhy, Santosh Hariharan, Jarkko Ylanko, Luis Orozco, Fu‐Yue Zeng, Ian Pass, Fernando Ugarte, Erik Forsberg, Chun-Teng Huang, David W. Andrews, Alexey V. Terskikh
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.51539

An efficient CRISPR-based strategy to insert small and large fragments of DNA using short homology arms
Cited by: 91
Author(s): Oguz Kanca, Jonathan Zirin, Jorge García-Marqués, Shannon M. Knight, Donghui Yang‐Zhou, Gabriel Amador, Hyunglok Chung, Zhuang Zuo, Liwen Ma, Yuchun He, Wen‐Jen Lin, Ying Fang, Ming Ge, Shinya Yamamoto, Karen L. Schulze, Yanhui Hu, Allan C. Spradling, Stephanie E. Mohr, Norbert Perrimon, Hugo J. Bellen
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.38187

Body size-dependent energy storage causes Kleiber’s law scaling of the metabolic rate in planarians
Cited by: 51
Author(s): Albert Thommen, Steffen Werner, Olga Frank, Patrick Jenny, Oskar Knittelfelder, Yihui Quek, Karim Fahmy, Andrej Shevchenko, Benjamin M. Friedrich, Frank Jülicher, Jochen C. Rink
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.10851

Cohesin-interacting protein WAPL-1 regulates meiotic chromosome structure and cohesion by antagonizing specific cohesin complexes
Cited by: 59
Author(s): Oliver Crawley, Consuelo Barroso, Sarah Testori, Nuria Ferrándiz, Nicola Silva, Maikel Castellano‐Pozo, Angel Luis Jaso-Tamame, Enrique Martínez-Pérez
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.40314

Translation attenuation by minocycline enhances longevity and proteostasis in old post-stress-responsive organisms
Cited by: 40
Author(s): Gregory M. Solis, Rozina Kardakaris, Elizabeth R. Valentine, Liron Bar-Peled, Alice L Chen, Megan M. Blewett, Mark McCormick, James R. Williamson, Brian K. Kennedy, Benjamin F. Cravatt, Michael Petrascheck
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.03708

Juxtaposition of heterozygous and homozygous regions causes reciprocal crossover remodelling via interference during Arabidopsis meiosis
Cited by: 88
Author(s): Piotr A Ziolkowski, Luke E. Berchowitz, Christophe Lambing, Nataliya E. Yelina, Xiaohui Zhao, Krystyna A. Kelly, Kyuha Choi, Liliana Ziolkowska, Viviana June, Eugenio Sánchez-Morán, F. Christopher H. Franklin, Gregory P. Copenhaver, Ian Henderson
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.61432

Cytoneme delivery of Sonic Hedgehog from ligand-producing cells requires Myosin 10 and a Dispatched-BOC/CDON co-receptor complex
Cited by: 38
Author(s): Eric T. Hall, Miriam E. Dillard, Daniel P. Stewart, Yan Zhang, Ben Wagner, Rachel M. Levine, Shondra M. Pruett-Miller, April Sykes, Jamshid Temirov, Richard E. Cheney, Motomi Mori, Camenzind G. Robinson, Stacey K. Ogden
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.15550

Small molecule proteostasis regulators that reprogram the ER to reduce extracellular protein aggregation
Cited by: 174
Author(s): Lars Plate, Christina B Cooley, John J. Chen, Ryan J Paxman, Ciara M Gallagher, Franck Madoux, Joseph C. Genereux, Wesley Dobbs, Dan Garza, Timothy Spicer, Louis Scampavia, Steven J Brown, Hugh Rosen, Evan T. Powers, Peter Walter, Peter Hodder, R. Luke Wiseman, Jeffery W. Kelly
Software Mentions: 1
Published: about 10 years ago

10.7554/eLife.66440

Quantitative live-cell imaging and computational modeling shed new light on endogenous WNT/CTNNB1 signaling dynamics
Cited by: 19
Author(s): Saskia Madelon Ada de Man, G. Zwanenburg, Tanne van der Wal, Mark A. Hink, Renée van Amerongen
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.40033

FGF2-FGFR1 signaling regulates release of Leukemia-Protective exosomes from bone marrow stromal cells
Cited by: 38
Author(s): Nathalie Javidi-Sharifi, Jacqueline Martinez, Isabel English, Sunil Kumar Joshi, Renata Scopim-Ribeiro, Shelton K Viola, David K. Edwards, Anupriya Agarwal, Clàudia López, Danielle Jorgens, Jeffrey W. Tyner, Brian J. Druker, Elie Traer
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.37549

Engineering induction of singular neural rosette emergence within hPSC-derived tissues
Cited by: 70
Author(s): Gavin Knight, Brady F Lundin, Nisha Iyer, Lydia Ashton, William A. Sethares, Rebecca Willett, Randolph S. Ashton
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.57894

PTEN and DNA-PK determine sensitivity and recovery in response to WEE1 inhibition in human breast cancer
Cited by: 14
Author(s): Andrä Brunner, Aldwin Suryo Rahmanto, Henrik J. Johansson, Marcela Franco, Johanna Viiliäinen, Mohiuddin Gazi, Oliver Frings, Erik Fredlund, Charles Spruck, Janne Lehtiö, Juha Rantala, Lars‐Gunnar Larsson, Olle Sangfelt
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.12552

Sequestration of host metabolism by an intracellular pathogen
Cited by: 62
Author(s): Lena Gehre, Olivier Gorgette, Stéphanie Perrinet, Marie‐Christine Prévost, Mathieu Ducatez, Amanda M. Giebel, David E. Nelson, Steven Ball, Agathe Subtil
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.20813

Acetylated tubulin is essential for touch sensation in mice
Cited by: 74
Author(s): Shane J. Morley, Yanmei Qi, Loredana Iovino, Laura Andolfi, Da Guo, Nereo Kalebic, Laura Castaldi, Christian Tischer, Carla Portulano, Giulia Bolasco, Kalyanee Shirlekar, Claudia M Fusco, Antonino Asaro, Federica Fermani, Mayya Sundukova, Ulf Matti, Luc Reymond, Adele De Ninno, Luca Businaro, Kai Johnsson, Marco Lazzarino, Jonas Ries, Yannick Schwab, Jing Hu, Paul A. Heppenstall
Software Mentions: 1
Published: almost 10 years ago

10.3390/s20164409

Automatic Detection Method for Cancer Cell Nucleus Image Based on Deep-Learning Analysis and Color Layer Signature Analysis Algorithm
Cited by: 13
Author(s): Hsing‐Hao Su, Hung‐Wei Pan, Chuan‐Pin Lu, Jyun-Jie Chuang, Tsan Yang
Software Mentions: 1
Published: about 6 years ago

10.1089/aid.2018.0188

Increased Cervical CD4+CCR5+ T Cells Among Kenyan Sex Working Women Using Depot Medroxyprogesterone Acetate
Cited by: 17
Author(s): Julie Lajoie, Annelie Tjernlund, Kenneth Omollo, Gabriella Edfeldt, Maria Röhl, Geneviève Boily-Larouche, Julianna Cheruiyot, Murungaru Kimani, Joshua Kimani, Julius Oyugi, Kristina Broliden, Keith R. Fowke
Software Mentions: 1
Published: over 7 years ago

10.1063/5.0035291

Injectable, macroporous scaffolds for delivery of therapeutic genes to the injured spinal cord
Cited by: 15
Author(s): Arshia Ehsanipour, Mayilone Sathialingam, Laila M. Rad, Joseph de Rutte, Rebecca D. Bierman, Jesse Liang, Weikun Xiao, Dino Di Carlo, Stephanie K. Seidlits
Software Mentions: 1
Published: over 5 years ago

10.1063/5.0054984

Engineering skeletal muscle tissues with advanced maturity improves synapse formation with human induced pluripotent stem cell-derived motor neurons
Cited by: 11
Author(s): Jeffrey W Santoso, Xiling Li, Divya Gupta, Gio C. Suh, Eric Hendricks, Shao-Yu Lin, Sarah L. Perry, Justin K. Ichida, Dion Dickman, Megan L. McCain
Software Mentions: 1
Published: about 5 years ago

10.1007/s00401-017-1725-7

In-depth clinico-pathological examination of RNA foci in a large cohort of C9ORF72 expansion carriers
Cited by: 70
Author(s): Mariely DeJesus-Hernandez, Ni Cole A. Finch, Xue Wang, Tania F. Gendron, Kevin F. Bieniek, Michael G. Heckman, Aliaksei Vasilevich, Melissa E. Murray, Linda Rousseau, Rachael Weesner, Anthony Lucido, Meeia Parsons, Jeannie Chew, Keith A. Josephs, Joseph E. Parisi, David S. Knopman, Ronald C. Petersen, Bradley F. Boeve, Neill R. Graff‐Radford, Jan de Boer, Yan W. Asmann, Leonard Petrucelli, Kevin B. Boylan, Dennis W. Dickson, Marka van Blitterswijk, Rosa Rademakers
Software Mentions: 1
Published: over 9 years ago

10.1007/s00401-021-02319-x

Missense mutations in small muscle protein X-linked (SMPX) cause distal myopathy with protein inclusions
Cited by: 6
Author(s): Mridul Johari, J. Sarparanta, Anna Vihola, Per Harald Jonson, Marco Savarese, Manu Jokela, Annalaura Torella, Giulio Piluso, Edith Said, Norbert Vella, Marija Cauchi, Armelle Magot, Francesca Magri, Eleonora Mauri, Cornelia Kornblum, Jens Reimann, Tanya Stojkovic, Norma B. Romero, H. Luque, Sanna Huovinen, Päivi Lahermo, Kati Donner, Giacomo Pietro Comi, Vincenzo Nigro, Peter Hackman, Bjarne Udd
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-017-0450-8

Zika virus tropism and interactions in myelinating neural cell cultures: CNS cells and myelin are preferentially affected
Cited by: 54
Author(s): Stephanie L. Cumberworth, Jennifer A. Barrie, Madeleine E. Cunningham, Daniely Paulino Gomes de Figueiredo, Verena Schultz, Adrian Wilder-Smith, Benjamin Brennan, Lindomar Pena, Rafael Freitas de Oliveira França, Christopher Linington, Susan C. Barnett, Hugh J. Willison, Alain Kohl, Julia M. Edgar
Software Mentions: 1
Published: over 9 years ago

10.1186/s40478-019-0864-6

Polarizing receptor activation dissociates fibroblast growth factor 2 mediated inhibition of myelination from its neuroprotective potential
Cited by: 13
Author(s): Katja Thümmler, Eran Rom, Thomas Zeis, Maren Lindner, Sarah Brunner, John Cole, Diana Arseni, Steve Mücklisch, Julia M. Edgar, Nicole Schaeren‐Wiemers, Avner Yayon, Christopher Linington
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40478-020-0894-0

Early-onset impairment of the ubiquitin-proteasome system in dopaminergic neurons caused by α-synuclein
Cited by: 52
Author(s): Chris McKinnon, Mitchell L. de Snoo, Elise Gondard, Clemens Neudorfer, Hien Chau, Sophie G. Ngana, Darren M O'Hara, Jonathan M. Brotchie, James B. Koprich, Andrés M. Lozano, Lorraine V. Kalia, Suneil K. Kalia
Software Mentions: 1
Published: over 6 years ago

10.1186/s40478-020-00976-9

Fyn kinase inhibition reduces protein aggregation, increases synapse density and improves memory in transgenic and traumatic Tauopathy
Cited by: 28
Author(s): Si Jie Tang, Arman Fesharaki-Zadeh, Hideyuki Takahashi, Sarah Helena Nies, Levi M. Smith, Anin Luo, Annabel S. Chyung, Marius Chiasseu, Stephen M. Strittmatter
Software Mentions: 1
Published: over 6 years ago

10.1080/17453674.2020.1793613

Rotator cuff repair with biological graft augmentation causes adverse tissue outcomes
Cited by: 11
Author(s): Mustafa S. Rashid, Robert S. Smith, Navraj S. Nagra, Kim Wheway, Bridget Watkins, Sarah Snelling, Stephanie G. Dakin, Andrew Carr
Software Mentions: 1
Published: about 6 years ago

10.1080/21623945.2020.1787583

AdipoGauge software for analysis of biological microscopic images
Cited by: 22
Author(s): Mohammad Yosofvand, Sanka Liyanage, Nishan S. Kalupahana, Shane Scoggin, Naïma Moustaïd-Moussa, Hanna Moussa
Software Mentions: 1
Published: almost 7 years ago

10.1002/adma.201501351

Discovery of a Novel Polymer for Human Pluripotent Stem Cell Expansion and Multilineage Differentiation
Cited by: 74
Author(s): Adam D. Celiz, James G W Smith, Asha K. Patel, Andrew L. Hook, Divya Rajamohan, Vinoj George, Luke Flatt, Minal Patel, V. Chandana Epa, Taranjit Singh, Robert Langer, Daniel G. Anderson, Nicholas Denby Allen, David C. Hay, David A. Winkler, David A. Barrett, Martyn C. Davies, Lorraine Young, Chris Denning, Morgan R. Alexander
Software Mentions: 1
Published: over 11 years ago

10.1002/advs.201902621

Routing Nanomolar Protein Cargoes to Lipid Raft‐Mediated/Caveolar Endocytosis through a Ganglioside GM1‐Specific Recognition Tag
Cited by: 5
Author(s): Norbert Imre, Anasztázia Hetényi, Enikő Szabó, Brigitta Bodnár, Ábel Szkalisity, Ilona Gróf, Alexandra Bocsik, Mária A. Deli, Péter Horváth, Ágnes Czibula, Éva Monostori, Tamás A. Martinek
Software Mentions: 1
Published: over 6 years ago

10.1002/advs.201901099

Engineered Cardiac Pacemaker Nodes Created by TBX18 Gene Transfer Overcome Source–Sink Mismatch
Cited by: 14
Author(s): Sandra I. Grijalva, Jin-Mo Gu, Jun Li, Natasha Fernandez, Jinqi Fan, Jung Hoon Sung, Seung Yup Lee, Conner Herndon, Erin M. Buckley, Sung‐Jin Park, Flavio H. Fenton, Hee Cheol Cho
Software Mentions: 1
Published: about 7 years ago

10.18632/aging.101065

Inducing cellular senescence in vitro by using genetically encoded photosensitizers
Cited by: 8
Author(s): Nadezhda V. Petrova, Artem V. Luzhin, Ekaterina O. Serebrovskaya, Alina P. Ryumina, Artem K. Velichko, S. V. Razin, Omar L. Kantidze
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.101066

Plasticity Related Gene 3 (PRG3) overcomes myelin-associated growth inhibition and promotes functional recovery after spinal cord injury
Cited by: 15
Author(s): Thomas Broggini, Lisa Schnell, Ali Ghoochani, José Marı́a Mateos, Michael Buchfelder, Kurt Wiendieck, Michael K. E. Schäfer, Ilker Y. Eyüpoglu, Nicolai Ε. Savaskan
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.102941

Peroxisomal abnormalities and catalase deficiency in Hutchinson-Gilford Progeria Syndrome
Cited by: 9
Author(s): Xiaojing Mao, Pratima Bharti, Abhirami Thaivalappil, Kan Cao
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.13108

Heterochromatin loss as a determinant of progerin‐induced DNA damage in Hutchinson–Gilford Progeria
Cited by: 24
Author(s): Alexandre Chojnowski, P.P. Ong, Mattheus Xing Rong Foo, David Liebl, Louis‐Peter Hor, Colin L. Stewart, Oliver Dreesen
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.13171

Autophagy regulates the localization and degradation of p16INK4a
Cited by: 18
Author(s): Philip Coryell, Supreet K. Goraya, Katherine A. Griffin, Margaret A. Redick, Samuel R. Sisk, Jeremy E. Purvis
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.12367

Age‐dependent decline in fin regenerative capacity in the short‐lived fishNothobranchius furzeri
Cited by: 61
Author(s): Sebastian Wendler, Nils Hartmann, Beate Hoppe, Christoph Englert
Software Mentions: 1
Published: over 11 years ago

10.1111/acel.12588

Residual Cdk1/2 activity after DNA damage promotes senescence
Cited by: 38
Author(s): Erik Müllers, Helena Silva Cascales, Kamila Burdová, Libor Macůrek, Arne Lindqvist
Software Mentions: 1
Published: over 9 years ago

10.1186/s13195-019-0469-0

Alzheimer’s disease phospholipase C-gamma-2 (PLCG2) protective variant is a functional hypermorph
Cited by: 95
Author(s): Lorenza Magno, Christian Lessard, Marta Martins, Verena Lang, Pedro Cruz, Yasmine T. Asi, Matilda Katan, Jamie Bilsland, Tammaryn Lashley, Paramita Chakrabarty, Todd E. Golde, Paul J. Whiting
Software Mentions: 1
Published: over 7 years ago

10.1016/j.ajhg.2018.02.010

Antisense Therapy for a Common Corneal Dystrophy Ameliorates TCF4 Repeat Expansion-Mediated Toxicity
Cited by: 53
Author(s): Christina Zarouchlioti, Beatriz Sanchez-Pintado, Nathaniel J. Hafford-Tear, Pontus Klein, Petra Lišková, Kalyan Dulla, Ma’ayan Semo, Anthony Vugler, Kirithika Muthusamy, Ľubica Ďuďáková, Hannah J. Levis, Pavlína Skalická, Pirro G. Hysi, Michael E. Cheetham, Stephen Tuft, Peter Adamson, Alison J. Hardcastle, Alice E. Davidson
Software Mentions: 1
Published: over 8 years ago

10.1155/2021/4793338

Pannexin1: Role as a Sensor to Injury Is Attenuated in Pretype 2 Corneal Diabetic Epithelium
Cited by: 3
Author(s): Garrett Rhodes, Kristen L Segars, Yoonjoo K Lee, Audrey E. K. Hutcheon, Celeste B. Rich, Vickery Trinkaus‐Randall
Software Mentions: 1
Published: about 5 years ago

10.1007/s00277-020-04304-y

Macrophage frequency in the bone marrow correlates with morphologic subtype of myeloproliferative neoplasm
Cited by: 7
Author(s): D. Molitor, Peter Boor, Andreas Buneß, Rebekka K. Schneider, Lino L. Teichmann, R Körber, Gábor Horváth, Steffen Koschmieder, Ines Gütgemann
Software Mentions: 1
Published: almost 6 years ago

10.1002/ana.25221

Stem cell modeling of mitochondrial parkinsonism reveals key functions of OPA1
Cited by: 17
Author(s): Mindaugas Jonikas, Martin Madill, Alexandre Mathy, Theresa Zekoll, Christos E. Zois, Simon Wigfield, Marzena Kurzawa‐Akanbi, Cathy Browne, David Sims, Patrick F. Chinnery, Sally A. Cowley, George K. Tofaris
Software Mentions: 1
Published: over 8 years ago

10.1128/AAC.01192-16

Cefazolin and Ertapenem, a Synergistic Combination Used To Clear Persistent Staphylococcus aureus Bacteremia
Cited by: 33
Author(s): George Sakoulas, Joshua Olson, Juwon Yim, Niedita B. Singh, Monika Kumaraswamy, Diana Quach, Michael J. Rybak, Joseph Pogliano, Victor Nizet
Software Mentions: 1
Published: almost 10 years ago

10.3390/antiox9070586

The NADPH Oxidase Isoform 1 Contributes to Angiotensin II-Mediated DNA Damage in the Kidney
Cited by: 4
Author(s): Anna Zimnol, Nora Spicker, Ronja Balhorn, Katrin Schröder, Nicole Schupp
Software Mentions: 1
Published: over 6 years ago

10.1007/s00204-020-02902-3

Multiple-endpoint in vitro carcinogenicity test in human cell line TK6 distinguishes carcinogens from non-carcinogens and highlights mechanisms of action
Cited by: 4
Author(s): Katherine E. Chapman, Eleanor C. Wilde, Fiona Chapman, Jatin R. Verma, Ume-Kulsoom Shah, Leanne Stannard, Anna L. Seager, James A. Tonkin, M. Rowan Brown, Ann Doherty, George E. Johnson, Shareen H. Doak, Gareth Jenkins
Software Mentions: 1
Published: about 6 years ago

10.1007/s00204-021-03036-w

The in vitro assessment of the toxicity of volatile, oxidisable, redox-cycling compounds: phenols as an example
Cited by: 3
Author(s): Laia Tolosa, Teresa Martínez-Sena, Johannes P. Schimming, Erika Moro, Sylvia Escher, Bas ter Braak, Bob van der Water, Miguel A. Miranda, Barbara M.A. van Vugt-Lussenburg, José V. Castell
Software Mentions: 1
Published: over 5 years ago

10.1155/2014/898453

Towards a Computational Model of a Methane Producing Archaeum
Cited by: 16
Author(s): J.R. Peterson, Piyush Labhsetwar, Jeremy R. Ellermeier, Petra R. A. Kohler, Ankur Jain, Taekjip Ha, William W. Metcalf, Zaida Luthey‐Schulten
Software Mentions: 1
Published: almost 13 years ago

10.1186/ar2493

Upregulated miR-146a expression in peripheral blood mononuclear cells from rheumatoid arthritis patients
Cited by: 603
Author(s): Kaleb M. Pauley, Minoru Satoh, Antony C. S. Chan, Michael R. Bubb, Westley H. Reeves, Edward K. L. Chan
Software Mentions: 1
Published: almost 19 years ago

10.1186/ar4374

Mast cells exert pro-inflammatory effects of relevance to the pathophyisology of tendinopathy
Cited by: 36
Author(s): Hayedeh Behzad, Aishwariya Sharma, Rouhollah Mousavizadeh, Alex X. Lu, Alexander Scott
Software Mentions: 1
Published: almost 14 years ago

10.1186/ar4157

Gene expression profiling of early intervertebral disc degeneration reveals a down-regulation of canonical Wnt signaling and caveolin-1 expression: implications for development of regenerative strategies
Cited by: 66
Author(s): Lucas A. Smolders, Björn P. Meij, David Onis, Frank M. Riemers, Niklas Bergknut, Richard Wubbolts, Guy C. M. Grinwis, Martin Houweling, Marian J. A. Groot Koerkamp, Dik van Leenen, Frank C. P. Holstege, H. A. W. Hazewinkel, Laura B. Creemers, Louis C. Penning, Marianna A. Tryfonidou
Software Mentions: 1
Published: almost 14 years ago

10.1089/adt.2016.730

Development of the Theta Comparative Cell Scoring Method to Quantify Diverse Phenotypic Responses Between Distinct Cell Types
Cited by: 18
Author(s): Scott J. Warchal, John C. Dawson, Neil O. Carragher
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2105-10-75

Edge detection in microscopy images using curvelets
Cited by: 66
Author(s): Tobias Gebäck, Petros Koumoutsakos
Software Mentions: 1
Published: over 17 years ago

10.1186/s12859-015-0782-y

CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels
Cited by: 49
Author(s): Kimmo Kartasalo, Risto-Pekka Pölönen, Marisa Ojala, Jyrki Rasku, Jukka Lekkala, Katriina Aalto‐Setälä, Pasi Kallio
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2105-15-32

Maximizing Kolmogorov Complexity for accurate and robust bright field cell segmentation
Cited by: 6
Author(s): Hamid Mohamadlou, Joseph C. Shope, Nicholas S. Flann
Software Mentions: 1
Published: over 12 years ago

10.1186/s12859-015-0816-5

FoCo: a simple and robust quantification algorithm of nuclear foci
Cited by: 39
Author(s): Anastasiya Lapytsko, Gabriel Kollárovič, Lyubomira Ivanova, Maja Studencka, Jörg Schaber
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2105-14-S10-S6

Multi-scale Gaussian representation and outline-learning based cell image segmentation
Cited by: 6
Author(s): Muhammad Farhan, Pekka Ruusuvuori, Mario Emmenlauer, Pauli Rämö, Christoph Dehio, Olli Yli‐Harja
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-14-291

BIOCAT: a pattern recognition platform for customizable biological image classification and annotation
Cited by: 48
Author(s): Jie Zhou, Santosh Lamichhane, Gabriella R Sterne, Bing Yan, Hanchuan Peng
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-14-292

Unsupervised automated high throughput phenotyping of RNAi time-lapse movies
Cited by: 12
Author(s): Henrik Failmezger, Holger Fröhlich, Achim Tresch
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-16-S11-S9

Visual parameter optimisation for biomedical image processing
Cited by: 10
Author(s): A.J. Pretorius, Yu Zhou, RA Ruddle
Software Mentions: 1
Published: about 11 years ago

10.1186/s12859-015-0618-9

Discrimination of cell cycle phases in PCNA-immunolabeled cells
Cited by: 62
Author(s): Felix Schönenberger, Anja Deutzmann, Elisa Ferrando‐May, Dorit Merhof
Software Mentions: 1
Published: over 11 years ago

10.1186/s12859-016-1126-2

A model of the spatial tumour heterogeneity in colorectal adenocarcinoma tissue
Cited by: 16
Author(s): Violeta N. Kovacheva, David Snead, Nasir M. Rajpoot
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-11-353

ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
Cited by: 77
Author(s): John Dittmar, Robert J.D. Reid, Rodney Rothstein
Software Mentions: 1
Published: over 16 years ago

10.1186/s12859-018-2087-4

Assessing microscope image focus quality with deep learning
Cited by: 110
Author(s): Samuel J. Yang, Marc Berndl, D. Michael Ando, Mariya, Arunachalam Narayanaswamy, Eric Christiansen, Stephan Hoyer, Chris Roat, Jia‐Jang Hung, Curtis Rueden, Asim Shankar, Steven Finkbeiner, Philip C. Nelson
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-11-124

A fast and robust hepatocyte quantification algorithm including vein processing
Cited by: 5
Author(s): Tetyana Ivanovska, Andrea Schenk, André Homeyer, Meihong Deng, Uta Dahmen, Olaf Dirsch, Horst K. Hahn, Lars Linsen
Software Mentions: 1
Published: over 16 years ago

10.1186/s12859-020-3431-z

A deep learning-based framework for lung cancer survival analysis with biomarker interpretation
Cited by: 22
Author(s): Lei Cui, Hansheng Li, Wenli Hui, Sitong Chen, Lin Yang, Yuxin Kang, Qirong Bo, Jun Feng
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-014-0431-x

FogBank: a single cell segmentation across multiple cell lines and image modalities
Cited by: 56
Author(s): Joe Chalfoun, Michael Majurski, Alden A. Dima, Christina H. Stuelten, Adele P. Peskin, Mary Brady
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2105-12-297

BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
Cited by: 11
Author(s): Christian Loyek, Nasir M. Rajpoot, Michael Khan, Tim Wilhelm Nattkemper
Software Mentions: 1
Published: about 15 years ago

10.1186/s12859-019-2602-2

Automated cell segmentation in FIJI® using the DRAQ5 nuclear dye
Cited by: 13
Author(s): Mischa Schwendy, Ronald E. Unger, Mischa Bonn, Sapun H. Parekh
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-020-3370-8

FocAn: automated 3D analysis of DNA repair foci in image stacks acquired by confocal fluorescence microscopy
Cited by: 13
Author(s): Simon Memmel, Dmitri Sisario, Heiko Zimmermann, Markus Sauer, Vladimir L. Sukhorukov, Cholpon S. Djuzenova, Michael Flentje
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-9-482

CellProfiler Analyst: data exploration and analysis software for complex image-based screens
Cited by: 480
Author(s): Thouis R. Jones, In Han Kang, Douglas B. Wheeler, Robert A. Lindquist, Adam Papallo, David M. Sabatini, Polina Golland, Anne E. Carpenter
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12859-020-3466-1

Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes
Cited by: 3
Author(s): Lu Cao, Andries D. van der Meer, Fons J. Verbeek, Robert Passier
Software Mentions: 1
Published: over 6 years ago

10.1186/s12915-018-0496-5

Combined flow cytometry and high-throughput image analysis for the study of essential genes in Caenorhabditis elegans
Cited by: 17
Author(s): Blanca Hernando‐Rodríguez, Annmary Paul Erinjeri, María Jesús Rodríguez‐Palero, Val Millar, Sara González-Hernández, María Olmedo, B. Schulze, Ralf Baumeister, Manuel J. Muñoz, Peter Askjaer, Marta Artal‐Sanz
Software Mentions: 1
Published: over 8 years ago

10.1186/s12915-016-0343-5

Surface attachment, promoted by the actomyosin system of Toxoplasma gondii is important for efficient gliding motility and invasion
Cited by: 78
Author(s): Jamie Whitelaw, María Fernanda Latorre Barragán, Simon Gras, Gurman S. Pall, Jacqueline M. Leung, Aoife T. Heaslip, Saskia Egarter, Nicole Andenmatten, Shane R. Nelson, David M. Warshaw, Gary E. Ward, Markus Meissner
Software Mentions: 1
Published: over 9 years ago

10.1186/s12915-017-0408-0

Thioester-containing proteins regulate the Toll pathway and play a role in Drosophila defence against microbial pathogens and parasitoid wasps
Cited by: 67
Author(s): Anna Dostálová, Samuel Rommelaere, Mickaël Poidevin, Bruno Lemaître
Software Mentions: 1
Published: about 9 years ago

10.1186/s12915-019-0736-3

Spatiotemporal mapping of RNA editing in the developing mouse brain using in situ sequencing reveals regional and cell-type-specific regulation
Cited by: 24
Author(s): E. Lundin, Chenglin Wu, Albin Widmark, Mikaela Behm, Jens Hjerling-Leffler, Chammiran Daniel, Marie Öhman, Mats Nilsson
Software Mentions: 1
Published: over 6 years ago

10.1186/s12915-017-0477-0

WorMachine: machine learning-based phenotypic analysis tool for worms
Cited by: 31
Author(s): Adam Hakim, Mor Y, Itai Antoine Toker, Amir Levine, Moran Neuhof, Yishai Markovitz, Oded Rechavi
Software Mentions: 1
Published: over 8 years ago

10.1186/s12885-015-1045-z

Enhanced tumour cell nuclear targeting in a tumour progression model
Cited by: 5
Author(s): Michael S Nastasie, Helmut Thissen, David A. Jans, Kylie M. Wagstaff
Software Mentions: 1
Published: over 11 years ago

Projects: pypi: CellProfiler

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Papers Mentioning CellProfiler 1,504