10.1111/jmi.12853

Application of automated electron microscopy imaging and machine learning to characterise and quantify nanoparticle dispersion in aqueous media
Cited by: 20
Author(s): Martha Ilett, John W. Wills, Paul Rees, Sandeep Sharma, Stuart Micklethwaite, Andy Brown, Rik Brydson, Nicole Hondow
Software Mentions: 1
Published: over 6 years ago

10.1089/aid.2018.0188

Increased Cervical CD4⁺CCR5⁺ T Cells Among Kenyan Sex Working Women Using Depot Medroxyprogesterone Acetate
Cited by: 17
Author(s): Julie Lajoie, Annelie Tjernlund, Kenneth Omollo, Gabriella Edfeldt, Maria Röhl, Geneviève Boily-Larouche, Julianna Cheruiyot, Murungaru Kimani, Joshua Kimani, Julius Oyugi, Kristina Broliden, Keith R. Fowke
Software Mentions: 1
Published: over 7 years ago

10.1063/5.0035291

Injectable, macroporous scaffolds for delivery of therapeutic genes to the injured spinal cord
Cited by: 15
Author(s): Arshia Ehsanipour, Mayilone Sathialingam, Laila M. Rad, Joseph de Rutte, Rebecca D. Bierman, Jesse Liang, Weikun Xiao, Dino Di Carlo, Stephanie K. Seidlits
Software Mentions: 1
Published: over 5 years ago

10.1063/5.0054984

Engineering skeletal muscle tissues with advanced maturity improves synapse formation with human induced pluripotent stem cell-derived motor neurons
Cited by: 11
Author(s): Jeffrey W Santoso, Xiling Li, Divya Gupta, Gio C. Suh, Eric Hendricks, Shao-Yu Lin, Sarah L. Perry, Justin K. Ichida, Dion Dickman, Megan L. McCain
Software Mentions: 1
Published: about 5 years ago

10.1007/s00401-017-1725-7

In-depth clinico-pathological examination of RNA foci in a large cohort of C9ORF72 expansion carriers
Cited by: 70
Author(s): Mariely DeJesus-Hernandez, Ni Cole A. Finch, Xue Wang, Tania F. Gendron, Kevin F. Bieniek, Michael G. Heckman, Aliaksei Vasilevich, Melissa E. Murray, Linda Rousseau, Rachael Weesner, Anthony Lucido, Meeia Parsons, Jeannie Chew, Keith A. Josephs, Joseph E. Parisi, David S. Knopman, Ronald C. Petersen, Bradley F. Boeve, Neill R. Graff‐Radford, Jan de Boer, Yan W. Asmann, Leonard Petrucelli, Kevin B. Boylan, Dennis W. Dickson, Marka van Blitterswijk, Rosa Rademakers
Software Mentions: 1
Published: over 9 years ago

10.1007/s00401-021-02319-x

Missense mutations in small muscle protein X-linked (SMPX) cause distal myopathy with protein inclusions
Cited by: 6
Author(s): Mridul Johari, J. Sarparanta, Anna Vihola, Per Harald Jonson, Marco Savarese, Manu Jokela, Annalaura Torella, Giulio Piluso, Edith Said, Norbert Vella, Marija Cauchi, Armelle Magot, Francesca Magri, Eleonora Mauri, Cornelia Kornblum, Jens Reimann, Tanya Stojkovic, Norma B. Romero, H. Luque, Sanna Huovinen, Päivi Lahermo, Kati Donner, Giacomo Pietro Comi, Vincenzo Nigro, Peter Hackman, Bjarne Udd
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-017-0450-8

Zika virus tropism and interactions in myelinating neural cell cultures: CNS cells and myelin are preferentially affected
Cited by: 54
Author(s): Stephanie L. Cumberworth, Jennifer A. Barrie, Madeleine E. Cunningham, Daniely Paulino Gomes de Figueiredo, Verena Schultz, Adrian Wilder-Smith, Benjamin Brennan, Lindomar Pena, Rafael Freitas de Oliveira França, Christopher Linington, Susan C. Barnett, Hugh J. Willison, Alain Kohl, Julia M. Edgar
Software Mentions: 1
Published: about 9 years ago

10.1186/s40478-019-0864-6

Polarizing receptor activation dissociates fibroblast growth factor 2 mediated inhibition of myelination from its neuroprotective potential
Cited by: 13
Author(s): Katja Thümmler, Eran Rom, Thomas Zeis, Maren Lindner, Sarah Brunner, John Cole, Diana Arseni, Steve Mücklisch, Julia M. Edgar, Nicole Schaeren‐Wiemers, Avner Yayon, Christopher Linington
Software Mentions: 1
Published: over 6 years ago

10.1186/s40478-020-0894-0

Early-onset impairment of the ubiquitin-proteasome system in dopaminergic neurons caused by α-synuclein
Cited by: 52
Author(s): Chris McKinnon, Mitchell L. de Snoo, Elise Gondard, Clemens Neudorfer, Hien Chau, Sophie G. Ngana, Darren M O'Hara, Jonathan M. Brotchie, James B. Koprich, Andrés M. Lozano, Lorraine V. Kalia, Suneil K. Kalia
Software Mentions: 1
Published: over 6 years ago

10.1186/s40478-020-00976-9

Fyn kinase inhibition reduces protein aggregation, increases synapse density and improves memory in transgenic and traumatic Tauopathy
Cited by: 28
Author(s): Si Jie Tang, Arman Fesharaki-Zadeh, Hideyuki Takahashi, Sarah Helena Nies, Levi M. Smith, Anin Luo, Annabel S. Chyung, Marius Chiasseu, Stephen M. Strittmatter
Software Mentions: 1
Published: about 6 years ago

10.1080/17453674.2020.1793613

Rotator cuff repair with biological graft augmentation causes adverse tissue outcomes
Cited by: 11
Author(s): Mustafa S. Rashid, Robert S. Smith, Navraj S. Nagra, Kim Wheway, Bridget Watkins, Sarah Snelling, Stephanie G. Dakin, Andrew Carr
Software Mentions: 1
Published: about 6 years ago

10.1080/21623945.2020.1787583

AdipoGauge software for analysis of biological microscopic images
Cited by: 22
Author(s): Mohammad Yosofvand, Sanka Liyanage, Nishan S. Kalupahana, Shane Scoggin, Naïma Moustaïd-Moussa, Hanna Moussa
Software Mentions: 1
Published: over 6 years ago

10.1002/adma.201501351

Discovery of a Novel Polymer for Human Pluripotent Stem Cell Expansion and Multilineage Differentiation
Cited by: 74
Author(s): Adam D. Celiz, James G W Smith, Asha K. Patel, Andrew L. Hook, Divya Rajamohan, Vinoj George, Luke Flatt, Minal Patel, V. Chandana Epa, Taranjit Singh, Robert Langer, Daniel G. Anderson, Nicholas Denby Allen, David C. Hay, David A. Winkler, David A. Barrett, Martyn C. Davies, Lorraine Young, Chris Denning, Morgan R. Alexander
Software Mentions: 1
Published: about 11 years ago

10.1002/advs.201902621

Routing Nanomolar Protein Cargoes to Lipid Raft‐Mediated/Caveolar Endocytosis through a Ganglioside GM1‐Specific Recognition Tag
Cited by: 5
Author(s): Norbert Imre, Anasztázia Hetényi, Enikő Szabó, Brigitta Bodnár, Ábel Szkalisity, Ilona Gróf, Alexandra Bocsik, Mária A. Deli, Péter Horváth, Ágnes Czibula, Éva Monostori, Tamás A. Martinek
Software Mentions: 1
Published: over 6 years ago

10.1002/advs.201901099

Engineered Cardiac Pacemaker Nodes Created by TBX18 Gene Transfer Overcome Source–Sink Mismatch
Cited by: 14
Author(s): Sandra I. Grijalva, Jin-Mo Gu, Jun Li, Natasha Fernandez, Jinqi Fan, Jung Hoon Sung, Seung Yup Lee, Conner Herndon, Erin M. Buckley, Sung‐Jin Park, Flavio H. Fenton, Hee Cheol Cho
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.101065

Inducing cellular senescence in vitro by using genetically encoded photosensitizers
Cited by: 8
Author(s): Nadezhda V. Petrova, Artem V. Luzhin, Ekaterina O. Serebrovskaya, Alina P. Ryumina, Artem K. Velichko, S. V. Razin, Omar L. Kantidze
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.101066

Plasticity Related Gene 3 (PRG3) overcomes myelin-associated growth inhibition and promotes functional recovery after spinal cord injury
Cited by: 15
Author(s): Thomas Broggini, Lisa Schnell, Ali Ghoochani, José Marı́a Mateos, Michael Buchfelder, Kurt Wiendieck, Michael K. E. Schäfer, Ilker Y. Eyüpoglu, Nicolai Ε. Savaskan
Software Mentions: 1
Published: almost 10 years ago

10.18632/aging.102941

Peroxisomal abnormalities and catalase deficiency in Hutchinson-Gilford Progeria Syndrome
Cited by: 9
Author(s): Xiaojing Mao, Pratima Bharti, Abhirami Thaivalappil, Kan Cao
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.13108

Heterochromatin loss as a determinant of progerin‐induced DNA damage in Hutchinson–Gilford Progeria
Cited by: 24
Author(s): Alexandre Chojnowski, P.P. Ong, Mattheus Xing Rong Foo, David Liebl, Louis‐Peter Hor, Colin L. Stewart, Oliver Dreesen
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.13171

Autophagy regulates the localization and degradation of p16^INK4a
Cited by: 18
Author(s): Philip Coryell, Supreet K. Goraya, Katherine A. Griffin, Margaret A. Redick, Samuel R. Sisk, Jeremy E. Purvis
Software Mentions: 1
Published: about 6 years ago

10.1111/acel.12367

Age‐dependent decline in fin regenerative capacity in the short‐lived fish<i>Nothobranchius furzeri</i>
Cited by: 61
Author(s): Sebastian Wendler, Nils Hartmann, Beate Hoppe, Christoph Englert
Software Mentions: 1
Published: about 11 years ago

10.1111/acel.12588

Residual Cdk1/2 activity after DNA damage promotes senescence
Cited by: 38
Author(s): Erik Müllers, Helena Silva Cascales, Kamila Burdová, Libor Macůrek, Arne Lindqvist
Software Mentions: 1
Published: over 9 years ago

10.1186/s13195-019-0469-0

Alzheimer’s disease phospholipase C-gamma-2 (PLCG2) protective variant is a functional hypermorph
Cited by: 95
Author(s): Lorenza Magno, Christian Lessard, Marta Martins, Verena Lang, Pedro Cruz, Yasmine T. Asi, Matilda Katan, Jamie Bilsland, Tammaryn Lashley, Paramita Chakrabarty, Todd E. Golde, Paul J. Whiting
Software Mentions: 1
Published: over 7 years ago

10.1016/j.ajhg.2018.02.010

Antisense Therapy for a Common Corneal Dystrophy Ameliorates TCF4 Repeat Expansion-Mediated Toxicity
Cited by: 53
Author(s): Christina Zarouchlioti, Beatriz Sanchez-Pintado, Nathaniel J. Hafford-Tear, Pontus Klein, Petra Lišková, Kalyan Dulla, Ma’ayan Semo, Anthony Vugler, Kirithika Muthusamy, Ľubica Ďuďáková, Hannah J. Levis, Pavlína Skalická, Pirro G. Hysi, Michael E. Cheetham, Stephen Tuft, Peter Adamson, Alison J. Hardcastle, Alice E. Davidson
Software Mentions: 1
Published: over 8 years ago

10.1155/2021/4793338

Pannexin1: Role as a Sensor to Injury Is Attenuated in Pretype 2 Corneal Diabetic Epithelium
Cited by: 3
Author(s): Garrett Rhodes, Kristen L Segars, Yoonjoo K Lee, Audrey E. K. Hutcheon, Celeste B. Rich, Vickery Trinkaus‐Randall
Software Mentions: 1
Published: about 5 years ago

10.1007/s00277-020-04304-y

Macrophage frequency in the bone marrow correlates with morphologic subtype of myeloproliferative neoplasm
Cited by: 7
Author(s): D. Molitor, Peter Boor, Andreas Buneß, Rebekka K. Schneider, Lino L. Teichmann, R Körber, Gábor Horváth, Steffen Koschmieder, Ines Gütgemann
Software Mentions: 1
Published: almost 6 years ago

10.1002/ana.25221

Stem cell modeling of mitochondrial parkinsonism reveals key functions of OPA1
Cited by: 17
Author(s): Mindaugas Jonikas, Martin Madill, Alexandre Mathy, Theresa Zekoll, Christos E. Zois, Simon Wigfield, Marzena Kurzawa‐Akanbi, Cathy Browne, David Sims, Patrick F. Chinnery, Sally A. Cowley, George K. Tofaris
Software Mentions: 1
Published: over 8 years ago

10.1128/AAC.01192-16

Cefazolin and Ertapenem, a Synergistic Combination Used To Clear Persistent Staphylococcus aureus Bacteremia
Cited by: 33
Author(s): George Sakoulas, Joshua Olson, Juwon Yim, Niedita B. Singh, Monika Kumaraswamy, Diana Quach, Michael J. Rybak, Joseph Pogliano, Victor Nizet
Software Mentions: 1
Published: almost 10 years ago

10.3390/antiox9070586

The NADPH Oxidase Isoform 1 Contributes to Angiotensin II-Mediated DNA Damage in the Kidney
Cited by: 4
Author(s): Anna Zimnol, Nora Spicker, Ronja Balhorn, Katrin Schröder, Nicole Schupp
Software Mentions: 1
Published: about 6 years ago

10.1007/s00204-020-02902-3

Multiple-endpoint in vitro carcinogenicity test in human cell line TK6 distinguishes carcinogens from non-carcinogens and highlights mechanisms of action
Cited by: 4
Author(s): Katherine E. Chapman, Eleanor C. Wilde, Fiona Chapman, Jatin R. Verma, Ume-Kulsoom Shah, Leanne Stannard, Anna L. Seager, James A. Tonkin, M. Rowan Brown, Ann Doherty, George E. Johnson, Shareen H. Doak, Gareth Jenkins
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00204-021-03036-w

The in vitro assessment of the toxicity of volatile, oxidisable, redox-cycling compounds: phenols as an example
Cited by: 3
Author(s): Laia Tolosa, Teresa Martínez-Sena, Johannes P. Schimming, Erika Moro, Sylvia Escher, Bas ter Braak, Bob van der Water, Miguel A. Miranda, Barbara M.A. van Vugt-Lussenburg, José V. Castell
Software Mentions: 1
Published: about 5 years ago

10.1155/2014/898453

Towards a Computational Model of a Methane Producing Archaeum
Cited by: 16
Author(s): J.R. Peterson, Piyush Labhsetwar, Jeremy R. Ellermeier, Petra R. A. Kohler, Ankur Jain, Taekjip Ha, William W. Metcalf, Zaida Luthey‐Schulten
Software Mentions: 1
Published: over 12 years ago

10.1186/ar2493

Upregulated miR-146a expression in peripheral blood mononuclear cells from rheumatoid arthritis patients
Cited by: 603
Author(s): Kaleb M. Pauley, Minoru Satoh, Antony C. S. Chan, Michael R. Bubb, Westley H. Reeves, Edward K. L. Chan
Software Mentions: 1
Published: over 18 years ago

10.1186/ar4374

Mast cells exert pro-inflammatory effects of relevance to the pathophyisology of tendinopathy
Cited by: 36
Author(s): Hayedeh Behzad, Aishwariya Sharma, Rouhollah Mousavizadeh, Alex X. Lu, Alexander Scott
Software Mentions: 1
Published: over 13 years ago

10.1186/ar4157

Gene expression profiling of early intervertebral disc degeneration reveals a down-regulation of canonical Wnt signaling and caveolin-1 expression: implications for development of regenerative strategies
Cited by: 66
Author(s): Lucas A. Smolders, Björn P. Meij, David Onis, Frank M. Riemers, Niklas Bergknut, Richard Wubbolts, Guy C. M. Grinwis, Martin Houweling, Marian J. A. Groot Koerkamp, Dik van Leenen, Frank C. P. Holstege, H. A. W. Hazewinkel, Laura B. Creemers, Louis C. Penning, Marianna A. Tryfonidou
Software Mentions: 1
Published: over 13 years ago

10.1089/adt.2016.730

Development of the Theta Comparative Cell Scoring Method to Quantify Diverse Phenotypic Responses Between Distinct Cell Types
Cited by: 18
Author(s): Scott J. Warchal, John C. Dawson, Neil O. Carragher
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2105-10-75

Edge detection in microscopy images using curvelets
Cited by: 66
Author(s): Tobias Gebäck, Petros Koumoutsakos
Software Mentions: 1
Published: over 17 years ago

10.1186/s12859-015-0782-y

CytoSpectre: a tool for spectral analysis of oriented structures on cellular and subcellular levels
Cited by: 49
Author(s): Kimmo Kartasalo, Risto-Pekka Pölönen, Marisa Ojala, Jyrki Rasku, Jukka Lekkala, Katriina Aalto‐Setälä, Pasi Kallio
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2105-15-32

Maximizing Kolmogorov Complexity for accurate and robust bright field cell segmentation
Cited by: 6
Author(s): Hamid Mohamadlou, Joseph C. Shope, Nicholas S. Flann
Software Mentions: 1
Published: over 12 years ago

10.1186/s12859-015-0816-5

FoCo: a simple and robust quantification algorithm of nuclear foci
Cited by: 39
Author(s): Anastasiya Lapytsko, Gabriel Kollárovič, Lyubomira Ivanova, Maja Studencka, Jörg Schaber
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-14-S10-S6

Multi-scale Gaussian representation and outline-learning based cell image segmentation
Cited by: 6
Author(s): Muhammad Farhan, Pekka Ruusuvuori, Mario Emmenlauer, Pauli Rämö, Christoph Dehio, Olli Yli‐Harja
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-14-291

BIOCAT: a pattern recognition platform for customizable biological image classification and annotation
Cited by: 48
Author(s): Jie Zhou, Santosh Lamichhane, Gabriella R Sterne, Bing Yan, Hanchuan Peng
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2105-14-292

Unsupervised automated high throughput phenotyping of RNAi time-lapse movies
Cited by: 12
Author(s): Henrik Failmezger, Holger Fröhlich, Achim Tresch
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2105-16-S11-S9

Visual parameter optimisation for biomedical image processing
Cited by: 10
Author(s): A.J. Pretorius, Yu Zhou, RA Ruddle
Software Mentions: 1
Published: about 11 years ago

10.1186/s12859-015-0618-9

Discrimination of cell cycle phases in PCNA-immunolabeled cells
Cited by: 62
Author(s): Felix Schönenberger, Anja Deutzmann, Elisa Ferrando‐May, Dorit Merhof
Software Mentions: 1
Published: about 11 years ago

10.1186/s12859-016-1126-2

A model of the spatial tumour heterogeneity in colorectal adenocarcinoma tissue
Cited by: 16
Author(s): Violeta N. Kovacheva, David Snead, Nasir M. Rajpoot
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2105-11-353

ScreenMill: A freely available software suite for growth measurement, analysis and visualization of high-throughput screen data
Cited by: 77
Author(s): John Dittmar, Robert J.D. Reid, Rodney Rothstein
Software Mentions: 1
Published: about 16 years ago

10.1186/s12859-018-2087-4

Assessing microscope image focus quality with deep learning
Cited by: 110
Author(s): Samuel J. Yang, Marc Berndl, D. Michael Ando, Mariya, Arunachalam Narayanaswamy, Eric Christiansen, Stephan Hoyer, Chris Roat, Jia‐Jang Hung, Curtis Rueden, Asim Shankar, Steven Finkbeiner, Philip C. Nelson
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-11-124

A fast and robust hepatocyte quantification algorithm including vein processing
Cited by: 5
Author(s): Tetyana Ivanovska, Andrea Schenk, André Homeyer, Meihong Deng, Uta Dahmen, Olaf Dirsch, Horst K. Hahn, Lars Linsen
Software Mentions: 1
Published: over 16 years ago

10.1186/s12859-020-3431-z

A deep learning-based framework for lung cancer survival analysis with biomarker interpretation
Cited by: 22
Author(s): Lei Cui, Hansheng Li, Wenli Hui, Sitong Chen, Lin Yang, Yuxin Kang, Qirong Bo, Jun Feng
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-014-0431-x

FogBank: a single cell segmentation across multiple cell lines and image modalities
Cited by: 56
Author(s): Joe Chalfoun, Michael Majurski, Alden A. Dima, Christina H. Stuelten, Adele P. Peskin, Mary Brady
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-12-297

BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
Cited by: 11
Author(s): Christian Loyek, Nasir M. Rajpoot, Michael Khan, Tim Wilhelm Nattkemper
Software Mentions: 1
Published: about 15 years ago

10.1186/s12859-019-2602-2

Automated cell segmentation in FIJI® using the DRAQ5 nuclear dye
Cited by: 13
Author(s): Mischa Schwendy, Ronald E. Unger, Mischa Bonn, Sapun H. Parekh
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-020-3370-8

FocAn: automated 3D analysis of DNA repair foci in image stacks acquired by confocal fluorescence microscopy
Cited by: 13
Author(s): Simon Memmel, Dmitri Sisario, Heiko Zimmermann, Markus Sauer, Vladimir L. Sukhorukov, Cholpon S. Djuzenova, Michael Flentje
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-9-482

CellProfiler Analyst: data exploration and analysis software for complex image-based screens
Cited by: 480
Author(s): Thouis R. Jones, In Han Kang, Douglas B. Wheeler, Robert A. Lindquist, Adam Papallo, David M. Sabatini, Polina Golland, Anne E. Carpenter
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12859-020-3466-1

Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes
Cited by: 3
Author(s): Lu Cao, Andries D. van der Meer, Fons J. Verbeek, Robert Passier
Software Mentions: 1
Published: over 6 years ago

10.1186/s12915-018-0496-5

Combined flow cytometry and high-throughput image analysis for the study of essential genes in Caenorhabditis elegans
Cited by: 17
Author(s): Blanca Hernando‐Rodríguez, Annmary Paul Erinjeri, María Jesús Rodríguez‐Palero, Val Millar, Sara González-Hernández, María Olmedo, B. Schulze, Ralf Baumeister, Manuel J. Muñoz, Peter Askjaer, Marta Artal‐Sanz
Software Mentions: 1
Published: over 8 years ago

10.1186/s12915-016-0343-5

Surface attachment, promoted by the actomyosin system of Toxoplasma gondii is important for efficient gliding motility and invasion
Cited by: 78
Author(s): Jamie Whitelaw, María Fernanda Latorre Barragán, Simon Gras, Gurman S. Pall, Jacqueline M. Leung, Aoife T. Heaslip, Saskia Egarter, Nicole Andenmatten, Shane R. Nelson, David M. Warshaw, Gary E. Ward, Markus Meissner
Software Mentions: 1
Published: over 9 years ago

10.1186/s12915-017-0408-0

Thioester-containing proteins regulate the Toll pathway and play a role in Drosophila defence against microbial pathogens and parasitoid wasps
Cited by: 67
Author(s): Anna Dostálová, Samuel Rommelaere, Mickaël Poidevin, Bruno Lemaître
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12915-019-0736-3

Spatiotemporal mapping of RNA editing in the developing mouse brain using in situ sequencing reveals regional and cell-type-specific regulation
Cited by: 24
Author(s): E. Lundin, Chenglin Wu, Albin Widmark, Mikaela Behm, Jens Hjerling-Leffler, Chammiran Daniel, Marie Öhman, Mats Nilsson
Software Mentions: 1
Published: over 6 years ago

10.1186/s12915-017-0477-0

WorMachine: machine learning-based phenotypic analysis tool for worms
Cited by: 31
Author(s): Adam Hakim, Mor Y, Itai Antoine Toker, Amir Levine, Moran Neuhof, Yishai Markovitz, Oded Rechavi
Software Mentions: 1
Published: over 8 years ago

10.1186/s12885-015-1045-z

Enhanced tumour cell nuclear targeting in a tumour progression model
Cited by: 5
Author(s): Michael S Nastasie, Helmut Thissen, David A. Jans, Kylie M. Wagstaff
Software Mentions: 1
Published: over 11 years ago

10.1186/s12885-020-06770-z

Tumor endothelial ELTD1 as a predictive marker for treatment of renal cancer patients with sunitinib
Cited by: 6
Author(s): Marjut Niinivirta, Maria Georganaki, Gunilla Enblad, Cecilia Lindskog, Anna Dimberg, Gustav Ullenhag
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-017-3084-0

HSP90 inhibition sensitizes head and neck cancer to platin-based chemoradiotherapy by modulation of the DNA damage response resulting in chromosomal fragmentation
Cited by: 26
Author(s): Martin McLaughlin, Holly E. Barker, Aadil Khan, Malin Pedersen, Magnus T. Dillon, David Mansfield, Radhika R. Patel, Joan Kyula, Shreerang A. Bhide, Kate Newbold, Christopher M. Nutting, Kevin Harrington
Software Mentions: 1
Published: over 9 years ago

10.1186/s12885-015-1540-2

Monitoring therapeutic efficacy of sunitinib using [18F]FDG and [18F]FMISO PET in an immunocompetent model of luminal B (HER2-positive)-type mammary carcinoma
Cited by: 15
Author(s): Benoît Thézé, Nicholas Bernards, Audrey Beynel, Stéphan Bouet, Bertrand Kühnast, Irène Buvat, Bertrand Tavitian, Raphaël Boisgard
Software Mentions: 1
Published: about 11 years ago

10.1186/s12885-020-07258-6

Mitochondrial apurinic/apyrimidinic endonuclease 1 enhances mtDNA repair contributing to cell proliferation and mitochondrial integrity in early stages of hepatocellular carcinoma
Cited by: 11
Author(s): Veronica Bazzani, Arianna Barchiesi, Dorota Radecka, Riccardo Pravisani, Antonio Guadagno, Carla Di Loreto, Umberto Baccarani, Carlo Vascotto
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-020-07420-0

Interferon-beta enhances sensitivity to gemcitabine in pancreatic cancer
Cited by: 10
Author(s): Amber Blaauboer, Stephanie Booy, Peter M. van Koetsveld, Bas Karels, Fadime Dogan, Suzanne van Zwienen, Casper H.J. van Eijck, Leo J. Hofland
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-019-5694-1

An image-based assay to quantify changes in proliferation and viability upon drug treatment in 3D microenvironments
Cited by: 19
Author(s): Vasanth Siruvallur Murali, Bo-Jui Chang, Reto Fiolka, Gaudenz Danuser, Murat Can Çobanoğlu, Erik S. Welf
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2121-11-5

Pirin delocalization in melanoma progression identified by high content immuno-detection based approaches
Cited by: 21
Author(s): Silvia Licciulli, Chiara Luise, Andrea Zanardi, Luca Giorgetti, Giuseppe Viale, Luisa Lanfrancone, Roberta Carbone, Myriam Alcalay
Software Mentions: 1
Published: over 16 years ago

10.1186/s12906-015-0860-8

Assessment of cytotoxicity exerted by leaf extracts from plants of the genus Rhododendron towards epidermal keratinocytes and intestine epithelial cells
Cited by: 15
Author(s): Ahmed Rezk, Alaa Al-Hashimi, Warren A. John, Hartwig Schepker, Matthias S. Ullrich, Klaudia Brix
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-15-1169

Integrative analysis of high-throughput RNAi screen data identifies the FER and CRKL tyrosine kinases as new regulators of the mitogenic ERK-dependent pathways in transformed cells
Cited by: 6
Author(s): Philippe Nizard, Frédéric Ezan, Dominique Bonnier, Nolwenn Le Meur, Sophie Langouët, Georges Baffet, Yannick Arlot‐Bonnemains, Nathalie Théret
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2334-14-472

Automated image-based assay for evaluation of HIV neutralization and cell-to-cell fusion inhibition
Cited by: 3
Author(s): Enas Sheik-Khalil, Mark-Anthony Bray, Gülşen Özkaya Şahin, Gabriella Scarlatti, Marianne Jansson, Anne E. Carpenter, Éva Mária Fenyõ
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12911-020-01185-z

Histopathological distinction of non-invasive and invasive bladder cancers using machine learning approaches
Cited by: 19
Author(s): Peng-Nien Yin, Kishan Kc, Shishi Wei, Qi Yu, Rui Li, Anne R. Haake, Hiroshi Miyamoto, Feng Cui
Software Mentions: 1
Published: about 6 years ago

10.1186/s12866-015-0376-x

Critical aspects of using bacterial cell viability assays with the fluorophores SYTO9 and propidium iodide
Cited by: 471
Author(s): Philipp Stiefel, Sabrina Schmidt-Emrich, Katharina Maniura‐Weber, Qun Ren
Software Mentions: 1
Published: over 11 years ago

10.1186/s12868-016-0274-7

Histological characterization of orphan transporter MCT14 (SLC16A14) shows abundant expression in mouse CNS and kidney
Cited by: 10
Author(s): Sahar Roshanbin, Frida A. Lindberg, Emilia Lekholm, Mikaela M. Eriksson, Emelie Perland, Johan Åhlund, Amanda Raine, Robert Fredriksson
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2202-12-74

Cathepsin K deficiency in mice induces structural and metabolic changes in the central nervous system that are associated with learning and memory deficits
Cited by: 45
Author(s): Stephanie Dauth, Ruxandra F. Sîrbulescu, Silvia Jordans, Maren Rehders, Linda Avena, Julia Oswald, Alexander Lerchl, Paul Säftig, Klaudia Brix
Software Mentions: 1
Published: about 15 years ago

10.1186/s12886-021-02099-8

Imaging mass cytometry for high-dimensional tissue profiling in the eye
Cited by: 8
Author(s): Anja Schlecht, Stefaniya Boneva, Henrike Salié, Saskia Killmer, Julian Wolf, Rozina Ida Hajdú, Claudia Auw-Haedrich, Hansjürgen Agostini, Thomas Reinhard, Günther Schlunck, Bertram Bengsch, Clemens Ak Lange
Software Mentions: 1
Published: almost 5 years ago

10.1186/1756-0500-5-358

Optimizing cell arrays for accurate functional genomics
Cited by: 6
Author(s): Sven Fengler, Philippe I. H. Bastiaens, Hernán E. Grecco, Pedro Roda-Navarro
Software Mentions: 1
Published: about 14 years ago

10.1186/s13104-020-05053-x

The cholesterol 24-hydroxylase activates autophagy and decreases mutant huntingtin build-up in a neuroblastoma culture model of Huntington’s disease
Cited by: 9
Author(s): Clévio Nóbrega, André Conceição, Ricardo A. Costa, Rebekah Koppenol, Raquel L. Sequeira, Ricardo José Nunes, Sara Carmo‐Silva, Adriana Marcelo, Carlos A. Matos, Sandrine Bétuing, Jocelyne Caboche, Nathalie Cartier, Sandro Alves
Software Mentions: 1
Published: over 6 years ago

10.1016/j.bbrep.2021.101096

The effect of serum starvation on tight junctional proteins and barrier formation in Caco-2 cells
Cited by: 2
Author(s): Aisling M. Ross, Darragh R. Walsh, Rachel M. Cahalane, Lynnette Marcar, John J. Mulvihill
Software Mentions: 1
Published: almost 5 years ago

10.1042/BJ20150364

Epithelial–mesenchymal transition, IP3 receptors and ER–PM junctions: translocation of Ca2+ signalling complexes and regulation of migration
Cited by: 21
Author(s): Emmanuel Sunday Okeke, Tony J. Parker, Hayley Dingsdale, Matthew J. Concannon, Muhammad Awais, Svetlana Voronina, Jordi Molgó, Malcolm Begg, Daniel J. Metcalf, Alex E. Knight, Robert Sutton, Lee P. Haynes, Alexei V. Tepikin
Software Mentions: 1
Published: over 10 years ago

10.1016/j.bbamcr.2013.06.011

cAMP inhibits migration, ruffling and paxillin accumulation in focal adhesions of pancreatic ductal adenocarcinoma cells: Effects of PKA and EPAC
Cited by: 42
Author(s): Alex Burdyga, Alan R. Conant, Lee P. Haynes, Jin Jin Zhang, Kees Jalink, Robert Sutton, John P. Neoptolemos, Eithne Costello, Alexei V. Tepikin
Software Mentions: 1
Published: over 12 years ago

10.1016/j.bbadis.2018.01.028

VPS33B and VIPAR are essential for epidermal lamellar body biogenesis and function
Cited by: 28
Author(s): Clare Rogerson, Paul Gissen
Software Mentions: 1
Published: over 8 years ago

10.3390/bioengineering8010006

Characterization of Gelatin Hydrogels Cross-Linked with Microbial Transglutaminase as Engineered Skeletal Muscle Substrates
Cited by: 25
Author(s): Divya Gupta, Jeffrey W Santoso, Megan L. McCain
Software Mentions: 1
Published: over 5 years ago

10.1002/bies.201100168

Innovation in biological microscopy: Current status and future directions
Cited by: 35
Author(s): Jason R. Swedlow
Software Mentions: 1
Published: over 14 years ago

10.1016/j.bioflm.2020.100021

Surfactin production is not essential for pellicle and root-associated biofilm development of Bacillus subtilis
Cited by: 33
Author(s): Maude Thérien, Heiko T. Kiesewalter, Emile Auria, Vincent Charron-Lamoureux, Mario Wibowo, Gergely Maróti, Ákos T. Kovács, Pascale B. Beauregard
Software Mentions: 1
Published: over 5 years ago

10.1007/s10522-019-09796-4

Optimisation of a screening platform for determining IL-6 inflammatory signalling in the senescence-associated secretory phenotype (SASP)
Cited by: 15
Author(s): Adam Rolt, Anitha Nair, Lynne S. Cox
Software Mentions: 1
Published: over 7 years ago

10.1093/bioinformatics/btz402

YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells
Cited by: 64
Author(s): Alex X. Lu, Taraneh Zarin, Ian Hsu, Alan M. Moses
Software Mentions: 1
Published: over 7 years ago

10.1093/bioinformatics/btz417

CytoPacq: a web-interface for simulating multi-dimensional cell imaging
Cited by: 15
Author(s): David Wiesner, David Svoboda, Martin Maška, Michal Kozubek
Software Mentions: 1
Published: about 7 years ago

10.1242/bio.037788

Automated morphometry toolbox for analysis of microscopic model organisms using simple bright-field imaging
Cited by: 5
Author(s): Guanghui Liu, Fenfen Dong, Chuanhai Fu, Zachary J. Smith
Software Mentions: 1
Published: over 7 years ago

10.1242/bio.201410595

The Nimrod transmembrane receptor Eater is required for hemocyte attachment to the sessile compartment in <i>Drosophila melanogaster</i>
Cited by: 65
Author(s): Andrew J. Bretscher, Viktor Honti, Olivier Binggeli, Olivier Burri, Mickaël Poidevin, Éva Kurucz, János Zsámboki, István Andó, Bruno Lemaître
Software Mentions: 1
Published: over 11 years ago

10.1242/bio.058513

A versatile, automated and high-throughput drug screening platform for zebrafish embryos
Cited by: 13
Author(s): Alexandra Lubin, Jason Otterstrom, Yvette Hoade, Ivana Bjedov, Eleanor R. Stead, Matt Whelan, Gaia Gestri, Yael Paran, Elspeth Payne
Software Mentions: 1
Published: almost 5 years ago

10.1242/bio.057026

First person – Pearl Ryder
Cited by: 0
Author(s):
Software Mentions: 1
Published: almost 6 years ago

10.1242/bio.044370

Reduced mTORC1-signaling in retinal progenitor cells leads to visual pathway dysfunction
Cited by: 6
Author(s): Iwan Jones, Anna-Carin Hägglund, Leif Carlsson
Software Mentions: 1
Published: over 7 years ago

10.1186/s12575-015-0023-9

CellProfiler: Novel Automated Image Segmentation Procedure for Super-Resolution Microscopy
Cited by: 22
Author(s): Kareem Soliman
Software Mentions: 1
Published: about 11 years ago

10.1186/s40659-018-0190-7

High-throughput micro-phenotyping measurements applied to assess stalk lodging in maize (Zea mays L.)
Cited by: 17
Author(s): Ying Zhang, Jianjun Du, Jinglu Wang, Liming Ma, Xianju Lu, Xinyue Pan, Xinyu Guo, Chunjiang Zhao
Software Mentions: 1
Published: almost 8 years ago

10.3390/biology8030052

The Use of Myelinating Cultures as a Screen of Glycomolecules for CNS Repair
Cited by: 3
Author(s): George A. McCanney, Susan L. Lindsay, Michael A. McGrath, Hugh J. Willison, Claire Moss, Charles D. Bavington, Susan C. Barnett
Software Mentions: 1
Published: about 7 years ago

10.3390/biology10060521

Nuclear Syndecan-1 Regulates Epithelial-Mesenchymal Plasticity in Tumor Cells
Cited by: 10
Author(s): Ashish Kumar-Singh, Malgorzata Maria Parniewska, Nikolina Giotopoulou, Joman Javadi, Wenwen Sun, Tünde Szatmári, Katalin Dobra, Anders Hjerpe, Jonas Fuxe
Software Mentions: 1
Published: about 5 years ago

10.1039/c6bm00214e

Identification of polymer surface adsorbed proteins implicated in pluripotent human embryonic stem cell expansion
Cited by: 18
Author(s): Moamen Hammad, Wei Rao, James G W Smith, Daniel G. Anderson, Robert Langer, Lorraine Young, David A. Barrett, Martyn C. Davies, Chris Denning, Morgan R. Alexander
Software Mentions: 1
Published: over 10 years ago

10.1016/j.biomaterials.2020.119998

Characterisation and evaluation of the regenerative capacity of Stro-4+ enriched bone marrow mesenchymal stromal cells using bovine extracellular matrix hydrogel and a novel biocompatible melt electro-written medical-grade polycaprolactone scaffold
Cited by: 26
Author(s): Cameron Black, Janos M. Kanczler, María C. de Andrés, Lisa J. White, Flávia Medeiros Savi, Onur Bas, Siamak Saifzadeh, Janin Henkel, Andrew C.W. Zannettino, Stan Gronthos, Maria A. Woodruff, Dietmar W. Hutmacher, Richard O.C. Oreffo
Software Mentions: 1
Published: about 6 years ago