Projects: pypi: CellProfiler
https://packages.ecosyste.ms/registries/pypi.org/packages/CellProfiler
An open-source application for biological image analysis
17 versions
Latest release: over 2 years ago
534 downloads last month
Enhanced Analysis
Educational Contributors:
bowdenm@spu.edu
christoph.sommer@imba.oeaw.ac.at
ctrueden@wisc.edu
nbauer@emory.edu
greent10@cardiff.ac.uk
s.warchal@sms.ed.ac.uk
warner.joshua@mayo.edu
magnus.nord@glasgow.ac.uk
leek@vpa84-8bb.broad.mit.edu
Repository Activity:
Repository Owner:
CellProfiler (organization)
Software for quantitative analysis of biological images Institutional
Software for quantitative analysis of biological images Institutional
README Analysis:
CITATION.cff
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+180
Educational commit emails
9 contributors with educational email addresses -
+15
Institutional repository owner
Repository owned by research institution -
+15
CITATION.cff file
Contains citation file for academic attribution
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning CellProfiler 1,504
10.7554/eLife.46595
Ceapins block the unfolded protein response sensor ATF6α by inducing a neomorphic inter-organelle tetherCited by: 42
Author(s): Sandra E. Torres, Ciara M Gallagher, Lars Plate, Meghna Gupta, Christina R Liem, Xiaoyan Guo, Ruilin Tian, Robert M. Stroud, Martin Kampmann, Jonathan S. Weissman, Peter Walter
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.58020
The RIF1-long splice variant promotes G1 phase 53BP1 nuclear bodies to protect against replication stressCited by: 14
Author(s): Lotte P. Watts, Toyoaki Natsume, Yuichiro Saito, Javier Garzón, Qianqian Dong, Lora Boteva, Nick Gilbert, Masato T. Kanemaki, Shin‐ichiro Hiraga, Anne Donaldson
Software Mentions: 1
Published: about 5 years ago
10.7554/eLife.38536
Spatial patterning of liver progenitor cell differentiation mediated by cellular contractility and Notch signalingCited by: 30
Author(s): Kerim B. Kaylan, Ian C. Berg, Matthew J. Biehl, Aidan Brougham-Cook, Ishita Jain, Sameed M Jamil, Lauren H Sargeant, Nicholas J Cornell, Lori T. Raetzman, Gregory H. Underhill
Software Mentions: 1
Published: almost 7 years ago
10.7554/eLife.28377
Initial elevations in glutamate and dopamine neurotransmission decline with age, as does exploratory behavior, in LRRK2 G2019S knock-in miceCited by: 66
Author(s): Mattia Volta, Dayne Beccano-Kelly, Sarah A. Paschall, Stefano Cataldi, Sarah E MacIsaac, Naila Kuhlmann, Chelsie Kadgien, Igor Tatarnikov, Jesse Fox, Jaskaran Khinda, Emma Mitchell, Sabrina Bergeron, Heather L. Melrose, Matthew J. Farrer, Austen J. Milnerwood
Software Mentions: 1
Published: about 8 years ago
10.7554/eLife.31922
Combinatorial programming of human neuronal progenitors using magnetically-guided stoichiometric mRNA deliveryCited by: 6
Author(s): Shiva Azimi, Steven D. Sheridan, Mostafa Ghannad-Rezaie, Peter M. Eimon, Mehmet Fatih Yanik
Software Mentions: 1
Published: over 7 years ago
10.3390/ijms160921658
A Novel Nanoprobe for Multimodal Imaging Is Effectively Incorporated into Human Melanoma Metastatic Cell LinesCited by: 10
Author(s): Synnøve Nymark Aasen, Aneta Pospíšilová, Tilo Wolf Eichler, Jiří Pánek, Martin Hrubý, Petr Štěpánek, Endy Spriet, Daniel Jirák, Kai Ove Skaftnesmo, Frits Thorsen
Software Mentions: 1
Published: about 10 years ago
10.3390/ijms18112491
Nitric Oxide Mediates Crosstalk between Interleukin 1β and WNT Signaling in Primary Human Chondrocytes by Reducing DKK1 and FRZB ExpressionCited by: 27
Author(s): Leilei Zhong, Stefano Schivo, Xiaobin Huang, Jeroen Leijten, Marcel Karperien, Janine N. Post
Software Mentions: 1
Published: almost 8 years ago
10.3390/ijms19082233
Restraining Akt1 Phosphorylation Attenuates the Repair of Radiation-Induced DNA Double-Strand Breaks and Reduces the Survival of Irradiated Cancer CellsCited by: 11
Author(s): Klaudia Szymonowicz, Sebastian Oeck, A. Krysztofiak, Jansje van der Linden, George Iliakis, Verena Jendrossek
Software Mentions: 1
Published: over 7 years ago
10.3390/ijms19082376
The ATR-Activation Domain of TopBP1 Is Required for the Suppression of Origin Firing during the S PhaseCited by: 13
Author(s): Miiko Sokka, Dennis Koalick, Peter Hemmerich, Juhani E. Syväoja, Helmut Pospiech
Software Mentions: 1
Published: over 7 years ago
10.3390/ijms20051244
Ginsenoside Rh2 Ameliorates Doxorubicin-Induced Senescence Bystander Effect in Breast Carcinoma Cell MDA-MB-231 and Normal Epithelial Cell MCF-10ACited by: 26
Author(s): Jingang Hou, Byeong Min Jeon, Yeejin Yun, Chang-Hao Cui, Sun Chang Kim
Software Mentions: 1
Published: over 6 years ago
10.3390/ijms20174266
Glomerular Collagen Deposition and Lipocalin-2 Expression Are Early Signs of Renal Injury in Prediabetic Obese RatsCited by: 7
Author(s): Éva Nóra Bukosza, Tamás Kaucsár, Mária Godó, Enikő Lajtár, Pál Tod, Gábor Koncsos, Zoltán V. Varga, Tamás Baranyai, Minh Tú Nguyen, Helga Schachner, Csaba Söti, Péter Ferdinándy, Zoltán Giricz, Gábor Szénási, Péter Hamar
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms20215337
Insight into Mechanobiology: How Stem Cells Feel Mechanical Forces and Orchestrate Biological FunctionsCited by: 73
Author(s): Chiara Argentati, Francesco Morena, Ilaria Tortorella, Martina Bazzucchi, Serena Porcellati, Carla Emiliani, Sabata Martino
Software Mentions: 1
Published: about 6 years ago
10.3390/ijms20246265
SLC38A10 (SNAT10) is Located in ER and Golgi Compartments and Has a Role in Regulating Nascent Protein SynthesisCited by: 12
Author(s): Rekha Tripathi, Kimia Hosseini, Vasiliki Arapi, Robert Fredriksson, Sonchita Bagchi
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijms21072588
Healthspan Maintenance and Prevention of Parkinson’s-like Phenotypes with Hydroxytyrosol and Oleuropein Aglycone in C. elegansCited by: 101
Author(s): Giovanni Brunetti, Gabriele Di Rosa, Maria Scuto, Manuela Leri, Massimo Stefani, Christian Schmitz‐Linneweber, Vittorio Calabrese, Nadine Saul
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21082949
Crocetin Prevents RPE Cells from Oxidative Stress through Protection of Cellular Metabolic Function and Activation of ERK1/2Cited by: 15
Author(s): Padideh Karimi, Ali Gheisari, Sylvia J. Gasparini, Hossein Baharvand, Faezeh Shekari, Leila Satarian, Marius Ader
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21114127
Large-Scale Image Analysis for Investigating Spatio-Temporal Changes in Nuclear DNA Damage Caused by Nitrogen Atmospheric Pressure Plasma JetsCited by: 6
Author(s): Xu Han, James Kapaldo, Yueying Liu, M. Sharon Stack, Elahe Alizadeh, Sylwia Ptasińska
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21113893
Healthspan Enhancement by Olive Polyphenols in C. elegans Wild Type and Parkinson’s ModelsCited by: 71
Author(s): Gabriele Di Rosa, Giovanni Brunetti, Maria Scuto, Angela Trovato Salinaro, Edward J. Calabrese, Roberto Crea, Christian Schmitz‐Linneweber, Vittorio Calabrese, Nadine Saul
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21145004
Genetically Encoded Fluorescent Sensor for Poly-ADP-RiboseCited by: 6
Author(s): Ekaterina O. Serebrovskaya, Nadezda M Podvalnaya, Varvara V. Dudenkova, А. Ефремова, Nadya G. Gurskaya, D.A. Gorbachev, Artem V. Luzhin, Omar L. Kantidze, Elena V. Zagaynova, С. И. Шрам, Konstantin A. Lukyanov
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21228656
Tissue Printing and Dual Excitation Flow Cytometry for Oxidative Stress—New Tools for Reactive Oxygen Species Research in Seed BiologyCited by: 5
Author(s): Danuta Cembrowska-Lech
Software Mentions: 1
Published: about 5 years ago
10.3390/ijms22031375
Extracellular Vesicles Do Not Mediate the Anti-Inflammatory Actions of Mouse-Derived Adipose Tissue Mesenchymal Stem Cells SecretomeCited by: 8
Author(s): María Carmen Carceller, Marı́a Isabel Guillén, M. Luisa Gil, Marı́a José Alcaraz
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms22041813
Human Islet Microtissues as an In Vitro and an In Vivo Model System for DiabetesCited by: 12
Author(s): Joan Mir-Coll, Tilo Moede, Meike Paschen, Aparna Neelakandhan, Ismael Valladolid‐Acebes, Barbara Leibiger, Adelinn Biernath, Carina Ämmälä, Ingo B. Leibiger, Burçak Yesildag, Per Olof Berggren
Software Mentions: 1
Published: almost 5 years ago
10.3390/ijms22052365
A Role for Human DNA Polymerase λ in Alternative Lengthening of TelomeresCited by: 3
Author(s): Elisa Mentegari, Federica Bertoletti, Miroslava Kiššová, Elisa Zucca, S. Galli, Giulia Tagliavini, Anna Garbelli, Antonio Maffia, Silvia Bione, Elena Ferrari, Fabrizio d’Adda di Fagagna, Sofia Francia, Simone Sabbioneda, Liuh‐Yow Chen, Joachim Lingner, Valérie Bergoglio, Jean-Sébastien Hoffmann, Ulrich Hübscher, Emmanuele Crespan, Giovanni Maga
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22094436
Radiation Enhancer Effect of Platinum Nanoparticles in Breast Cancer Cell Lines: In Vitro and In Silico AnalysesCited by: 20
Author(s): Marie Hullo, Romain Grall, Y. Perrot, Cécile Mathé, Véronique Ménard, Xingsheng Yang, S. Lacombe, Erika Porcel, C. Villagrasa, Sylvie Chevillard, Emmanuelle Bourneuf
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22094537
Small-Molecule Inhibitors of the RNA M6A Demethylases FTO Potently Support the Survival of Dopamine NeuronsCited by: 18
Author(s): Simona Selberg, Li-Ying Yu, Olesja Bondarenko, Esko Kankuri, Neinar Seli, Vera Kovaleva, Koit Herodes, Märt Saarma, Mati Karelson
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22115588
Bioactive Nanofiber-Based Conduits in a Peripheral Nerve Gap Management—An Animal Model StudyCited by: 12
Author(s): Tomasz Dębski, Ewa Kijeńska‐Gawrońska, Aleksandra Zołocińska, Katarzyna Siennicka, Anna Słysz, Wiktor Paskal, Paweł Włodarski, Wojciech Święszkowski, Zygmunt Pojda
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22126236
TNFα-Induced LDL Cholesterol Accumulation Involve Elevated LDLR Cell Surface Levels and SR-B1 Downregulation in Human Arterial Endothelial CellsCited by: 5
Author(s): Emmanuel U. Okoro
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22126553
In Vitro and In Vivo Efficacies of the Linear and the Cyclic Version of an All-d-Enantiomeric Peptide Developed for the Treatment of Alzheimer’s DiseaseCited by: 5
Author(s): Sarah Schemmert, Luana Cristina Camargo, Dominik Honold, Ian Gering, Janine Kutzsche, Antje Willuweit, Dieter Willbold
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22137098
New Concept and Apparatus for Cytocentrifugation and Cell Processing for Microscopy AnalysisCited by: 1
Author(s): Anna Ligasová, Karel Koberna
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22168644
Ultrasensitive and Multiplexed Protein Imaging with Cleavable Fluorescent Tyramide and Antibody StrippingCited by: 2
Author(s): Thai H. Pham, Christopher D. Nazaroff, Joshua LaBaer, Jia Guo
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22168853
Cell Stress Induces Mislocalization of Transcription Factors with Mitochondrial EnrichmentCited by: 3
Author(s): Chiara Rossi, Anna Fernàndez, Pascual Torres, Omar Ramírez‐Núñez, Ana Belén Granado-Serrano, Laia Fontdevila, Mònica Povedano, Reinald Pamplona, Isidró Ferrer, Manuel Portero‐Otín
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22179387
Drebrin Regulates Acetylcholine Receptor Clustering and Organization of Microtubules at the Postsynaptic MachineryCited by: 2
Author(s): Paloma Álvarez-Suárez, Natalia Nowak, Anna Protasiuk-Filipunas, Hiroyuki Yamazaki, Tomasz J. Prószyński, Marta Gawor
Software Mentions: 1
Published: about 4 years ago
10.3390/ijms221910730
Molecular Mechanism of the Anti-Inflammatory Action of HeparinCited by: 17
Author(s): L. Litov, P. Petkov, Miroslav Rangelov, Nevena Ilieva, Elena Lilkova, Nadezhda Todorova, Elena Krachmarova, Kristina Malinova, Anastas Gospodinov, Rumyana Hristova, Iván Ivanov, Genoveva Nacheva
Software Mentions: 1
Published: about 4 years ago
10.1186/s12951-017-0258-5
Optimizing conditions for labeling of mesenchymal stromal cells (MSCs) with gold nanoparticles: a prerequisite for in vivo tracking of MSCsCited by: 32
Author(s): Philipp Nold, Raimo Hartmann, Neus Feliu, Karsten Kantner, Mahmoud Gamal, Beatriz Pelaz, Jonas Hühn, Xing Sun, Philipp Jungebluth, Pablo del Pino, Holger Hackstein, Paolo Macchiarini, Wolfgang J. Parak, Cornelia Brendel
Software Mentions: 1
Published: over 8 years ago
10.1186/s11689-020-09332-3
A small-molecule screen reveals novel modulators of MeCP2 and X-chromosome inactivation maintenanceCited by: 15
Author(s): Hyeong-Min Lee, M. Bram Kuijer, Nerea Ruiz Blanes, Ellen P. Clark, Megumi Aita, Lorena Galiano Arjona, Agnieszka Kokot, Noah Sciaky, Jeremy M. Simon, Sanchita Bhatnagar, Benjamin D. Philpot, Andrea Cerase
Software Mentions: 1
Published: about 5 years ago
10.1186/s12974-019-1647-5
HSV-1 triggers paracrine fibroblast growth factor response from cortical brain cells via immediate-early protein ICP0Cited by: 13
Author(s): Niko Hensel, Verena Raker, Benjamin Förthmann, Nora Tula Detering, Sabrina Kubinski, Anna Buch, Georgios Katzilieris-Petras, Julia Spanier, Viktoria Gudi, Sylvia Wagenknecht, Verena Kopfnagel, Thomas Werfel, Martin Stangel, Andreas Beineke, Ulrich Kalinke, Søren R. Paludan, Beate Sodeik, Peter Claus
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12974-017-0813-x
Aprepitant limits in vivo neuroinflammatory responses in a rhesus model of Lyme neuroborreliosisCited by: 11
Author(s): Alejandra N. Martínez, Amanda R. Burmeister, Geeta Ramesh, Lara A. Doyle-Meyers, Ian Marriott, Mario T. Philipp
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12974-016-0666-8
High-fat diet feeding differentially affects the development of inflammation in the central nervous systemCited by: 116
Author(s): Owein Guillemot-Legris, Julien Masquelier, Amandine Everard, Patrice D. Cani, Mireille Alhouayek, Giulio G. Muccioli
Software Mentions: 1
Published: about 9 years ago
10.1186/s12974-019-1576-3
A small peptide antagonist of the Fas receptor inhibits neuroinflammation and prevents axon degeneration and retinal ganglion cell death in an inducible mouse model of glaucomaCited by: 75
Author(s): Anitha Krishnan, Andrew J. Kocab, David N. Zacks, Ann Marshak‐Rothstein, Meredith Gregory-Ksander
Software Mentions: 1
Published: about 6 years ago
10.1523/JNEUROSCI.0772-16.2017
TARP γ-2 Is Required for Inflammation-Associated AMPA Receptor Plasticity within Lamina II of the Spinal Cord Dorsal HornCited by: 21
Author(s): Steve J. Sullivan, M Farrant, SG Cull-Candy
Software Mentions: 1
Published: over 8 years ago
10.1523/JNEUROSCI.3619-17.2018
mTORC1 Is Transiently Reactivated in Injured Nerves to Promote c-Jun Elevation and Schwann Cell DedifferentiationCited by: 43
Author(s): Camilla Norrmén, Gianluca Figlia, Patrick Pfistner, Jorge A. Pereira, Sven Bachofner, Ueli Suter
Software Mentions: 1
Published: over 7 years ago
10.1155/2019/7604396
Repressed Wnt Signaling Accelerates the Aging Process in Mouse EyesCited by: 4
Author(s): Yujin Zhang, Joseph Jeffrey, Fei Dong, Jianhua Zhang, Winston W.‐Y. Kao, Chia-Yang Liu, Yong Yuan
Software Mentions: 1
Published: over 6 years ago
10.1186/1757-2215-7-12
Sequence variation among members of the miR-200 microRNA family is correlated with variation in the ability to induce hallmarks of mesenchymal-epithelial transition in ovarian cancer cellsCited by: 21
Author(s): Neda Jabbari, Ashley N Reavis, John F. McDonald
Software Mentions: 1
Published: almost 12 years ago
10.18632/oncotarget.7251
Lipid tethering of breast tumor cells enables real-time imaging of free-floating cell dynamics and drug responseCited by: 10
Author(s): Kristi R. Chakrabarti, James I. Andorko, Rebecca A. Whipple, Peipei Zhang, Elisabeth L. Sooklal, Stuart S. Martin, Christopher M. Jewell
Software Mentions: 1
Published: almost 10 years ago
10.18632/oncotarget.8201
Cell line with endogenous EGFRvIII expression is a suitable model for research and drug development purposesCited by: 21
Author(s): Wojciech J. Stec, Kamila Rosiak, Paulina Siejka, Joanna Peciak, Marta Popęda, Mateusz Banaszczyk, Róża Pawłowska, Cezary Tręda, Krystyna Hułas-Bigoszewska, Sylwester Piaskowski, Ewelina Stoczynska‐Fidelus, Piotr Rieske
Software Mentions: 1
Published: over 9 years ago
10.18632/oncotarget.8743
MUC1 stimulates EGFR expression and function in endometrial cancerCited by: 22
Author(s): Brian J. Engel, Jessica L. Bowser, Russell R. Broaddus, Daniel D. Carson
Software Mentions: 1
Published: over 9 years ago
10.18632/oncotarget.10675
Insulin-like growth factor binding protein-3 links obesity and breast cancer progressionCited by: 16
Author(s): Tiffany Scully, Sue M. Firth, Carolyn D. Scott, Hasanthi C. de Silva, John E. Pintar, Tailoi Chan‐Ling, Stephen M. Twigg, Robert C. Baxter
Software Mentions: 1
Published: over 9 years ago
10.18632/oncotarget.14066
Bafilomycin A1 triggers proliferative potential of senescent cancer cells<i>in vitro</i>and in NOD/SCID miceCited by: 39
Author(s): Halina Waś, Kamila Barszcz, Joanna Czarnecka, Agata Kowalczyk, Tytus Bernaś, Ewelina Użarowska, Paulina Koza, Agata Klejman, Katarzyna Piwocka, Bożena Kamińska, Ewa Sikora
Software Mentions: 1
Published: almost 9 years ago
10.18632/oncotarget.12088
Increased expression of programmed death ligand 1 (PD-L1) in human pituitary tumorsCited by: 95
Author(s): Mei Yu, Wenya Linda Bi, Noah F. Greenwald, Ziwei Du, Nathalie Y.R. Agar, Ursula B. Kaiser, Whitney W. Woodmansee, David A. Reardon, Gordon J. Freeman, Peter E. Fecci, Edward R. Laws, Sandro Santagata, Gavin P. Dunn, Ian F. Dunn
Software Mentions: 1
Published: about 9 years ago
10.18632/oncotarget.17901
Characterization of tumor-associated T-lymphocyte subsets and immune checkpoint molecules in head and neck squamous cell carcinomaCited by: 90
Author(s): Axel Lechner, Hans Schlößer, Sacha I. Rothschild, Martin Thelen, Sabrina Reuter, Peter Zentis, Alexander Shimabukuro‐Vornhagen, Sebastian Theurich, Kerstin Wennhold, María García-Márquez, Lars Tharun, Alexander Quaas, Astrid Schauß, Jörg Isensee, Tim Hucho, Christian U. Huebbers, Michael von Bergwelt‐Baildon, Dirk Beutner
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.10288
IL-8, GRO and MCP-1 produced by hepatocellular carcinoma microenvironment determine the migratory capacity of human bone marrow-derived mesenchymal stromal cells without affecting tumor aggressivenessCited by: 33
Author(s): Juan Bayo, Alejandrina Real, Esteban Fiore, Mariana Malvicini, Leonardo Sganga, Marcela F. Bolontrade, Oscar Andriani, Carolina Bizama, Cristóbal Fresno, Osvaldo L. Podhajcer, Elmer Fernández, Manuel Gidekel, Guillermo Mazzolini, Mariana Garcı́a
Software Mentions: 1
Published: over 9 years ago
10.18632/oncotarget.20642
Separation of low and high grade colon and rectum carcinoma by eukaryotic translation initiation factors 1, 5 and 6Cited by: 33
Author(s): Nicole Golob-Schwarzl, Caroline Schweiger, Carina Koller, Stefanie Krassnig, Margit Gogg-Kamerer, Nadine Gantenbein, Anna M. Toeglhofer, Christina Wodlej, Helmut Bergler, Brigitte Pertschy, Stefan Uranitsch, Magdalena Holter, Amin El‐Heliebi, Julia Fuchs, Andreas Punschart, Philipp Stiegler, Marlen Keil, Jens Hoffmann, David Henderson, Hans Lehrach, Christoph Reinhard, Christian Regenbrecht, Rudolf Schicho, Peter Fickert, Sigurd Lax, Johannes Haybaeck
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.22729
<i>Neat1</i> in hematopoietic stem cellsCited by: 8
Author(s): Noam Fallik, Yael Bar-Lavan, Yariv Greenshpan, Oron Goldstein, Markus Grosch, Micha Drukker, Roi Gazit
Software Mentions: 1
Published: almost 8 years ago
10.1002/cjp2.218
High tumor cell platelet‐derived growth factor receptor beta expression is associated with shorter survival in malignant pleural epithelioid mesotheliomaCited by: 3
Author(s): Hely Ollila, Juuso Paajanen, Henrik Wolff, Ilkka Ilonen, Eva Sutinen, Katja Välimäki, Arne Östman, Sisko Anttila, Eeva Kettunen, Jari Räsänen, Olli Kallioniemi, Marjukka Myllärniemi, Mikko I. Mäyränpää, Teijo Pellinen
Software Mentions: 1
Published: over 4 years ago
10.1098/rsob.150172
Dr Jekyll and Mr Hyde: a strange case of 5-ethynyl-2′-deoxyuridine and 5-ethynyl-2′-deoxycytidineCited by: 17
Author(s): Anna Ligasová, Radek Liboska, David Friedecký, Kateřina Mičová, Tomáš Adam, Tomáš Oždian, Ivan Rosenberg, Karel Koberna
Software Mentions: 1
Published: almost 10 years ago
10.1098/rsob.170142
Characteristics of 29 novel atypical solute carriers of major facilitator superfamily type: evolutionary conservation, predicted structure and neuronal co-expressionCited by: 41
Author(s): Emelie Perland, Sonchita Bagchi, Axel Klaesson, Robert Fredriksson
Software Mentions: 1
Published: about 8 years ago
10.1186/s40349-015-0040-9
Sonoporation efficacy on SiHa cells in vitro at raised bath temperatures—experimental validation of a prototype sonoporation deviceCited by: 2
Author(s): Jonathan Lawrence Kivinen, Melissa Togtema, Gregor Mulzer, Joshua J. Choi, Ingeborg Zehbe, Laura Curiel, Samuel Pichardo
Software Mentions: 1
Published: about 10 years ago
10.1177/2041731420919334
High BMPR2 expression leads to enhanced SMAD1/5/8 signalling and GDF6 responsiveness in human adipose-derived stem cells: implications for stem cell therapies for intervertebral disc degenerationCited by: 9
Author(s): Tom Hodgkinson, Francis Wignall, Judith A. Hoyland, Stephen M. Richardson
Software Mentions: 1
Published: almost 6 years ago
10.1002/term.2051
Low-density subculture: a technical note on the importance of avoiding cell-to-cell contact during mesenchymal stromal cell expansionCited by: 19
Author(s): Richard Balint, Stephen M. Richardson, Sarah H. Cartmell
Software Mentions: 1
Published: over 10 years ago
10.1186/s13023-020-01437-1
High content drug screening for Fanconi anemia therapeuticsCited by: 3
Author(s): Helena Montanuy, Cristina Camps-Fajol, Jordi Carreras‐Puigvert, Maria Häggblad, Bo Lundgren, Miriam Aza‐Carmona, Thomas Helleday, Jordi Minguillón, Jordi Surrallés
Software Mentions: 1
Published: over 5 years ago
10.3791/53821
Why Quantification Matters: Characterization of Phenotypes at the <em>Drosophila</em> Larval Neuromuscular JunctionCited by: 3
Author(s): Mario Sanhueza, Anisha Kubasik-Thayil, Giuseppa Pennetta
Software Mentions: 1
Published: over 9 years ago
10.1155/2016/7409196
Apocynin and Diphenyleneiodonium Induce Oxidative Stress and Modulate PI3K/Akt and MAPK/Erk Activity in Mouse Embryonic Stem CellsCited by: 29
Author(s): Jan Kučera, Lucia Binó, Kateřina Štefková, Josef Jaroš, Ondřej Vašíček, Josef Večeřa, Lukáš Kubala, Jiřı́ Pachernı́k
Software Mentions: 1
Published: almost 10 years ago
10.1155/2018/1324739
An<i>In Vivo</i>Zebrafish Model for Interrogating ROS-Mediated Pancreatic<i>β</i>-Cell Injury, Response, and PreventionCited by: 21
Author(s): Abhishek Kulkarni, Abass M. Conteh, Cody A. Sorrell, Anjali Mirmira, Sarah A. Tersey, Raghavendra G. Mirmira, Amelia K. Linnemann, Ryan M. Anderson
Software Mentions: 1
Published: almost 8 years ago
10.1155/2020/2309437
Circadian Clock and OxInflammation: Functional Crosstalk in Cutaneous HomeostasisCited by: 7
Author(s): Elena Frigato, Mascia Benedusi, Anna Guiotto, Cristiano Bertolucci, Giuseppe Valacchi
Software Mentions: 1
Published: over 5 years ago
10.1523/ENEURO.0477-19.2019
MANF Ablation Causes Prolonged Activation of the UPR without Neurodegeneration in the Mouse Midbrain Dopamine SystemCited by: 23
Author(s): Emmi Pakarinen, Tatiana Danilova, Vootele Võikar, Piotr Chmielarz, Petteri Piepponen, Mikko Airavaara, Märt Saarma, Maria Lindahl
Software Mentions: 1
Published: almost 6 years ago
10.1523/ENEURO.0370-20.2020
κ Opioid Receptor-Dynorphin Signaling in the Central Amygdala Regulates Conditioned Threat Discrimination and AnxietyCited by: 10
Author(s): Madison A. Baird, TingTing Y. Hsu, Rachel Wang, Barbara Juarez, Larry S. Zweifel
Software Mentions: 1
Published: almost 5 years ago
10.1523/ENEURO.0462-19.2019
A New Mouse Line Reporting the Translation of Brain-Derived Neurotrophic Factor Using Green Fluorescent ProteinCited by: 9
Author(s): Erin Wosnitzka, Xinsheng Nan, Jeff Nan, Pedro Chacón-Fernández, Lothar Kußmaul, Michael Schuler, Bastian Hengerer, Yves‐Alain Barde
Software Mentions: 1
Published: almost 6 years ago
10.1523/ENEURO.0367-18.2018
Zic4-Lineage Cells Increase Their Contribution to Visual Thalamic Nuclei during Murine Embryogenesis If They Are Homozygous or Heterozygous for Loss of Pax6 FunctionCited by: 1
Author(s): Ziwen Li, Thomas Pratt, David J. Price
Software Mentions: 1
Published: about 7 years ago
10.1523/ENEURO.0335-17.2018
Susceptibility to Oxidative Stress Is Determined by Genetic Background in Neuronal Cell CulturesCited by: 7
Author(s): Mattias Günther, Faiez Al Nimer, Fredrik Piehl, Mårten Risling, Tiit Mathiesen
Software Mentions: 1
Published: over 7 years ago
10.1523/ENEURO.0214-17.2017
MANF Is Essential for Neurite Extension and Neuronal Migration in the Developing CortexCited by: 46
Author(s): Kuan-Yin Tseng, Tatiana Danilova, Andrii Domanskyi, Märt Saarma, Maria Lindahl, Mikko Airavaara
Software Mentions: 1
Published: about 8 years ago
10.1523/ENEURO.0239-19.2019
Loss of Tiparp Results in Aberrant Layering of the Cerebral CortexCited by: 8
Author(s): Giulia Grimaldi, Barbora Vagaská, Oleksandr Ievglevskyi, Elena Kondratskaya, Joel C. Glover, Jason Matthews
Software Mentions: 1
Published: about 6 years ago
10.3390/nu10111788
Direct and Long-Term Metabolic Consequences of Lowly vs. Highly-Digestible Starch in the Early Post-Weaning Diet of MiceCited by: 8
Author(s): José M. S. Fernández-Calleja, Lex Bouwman, Hans J. M. Swarts, Annemarie Oosting, Jaap Keijer, Evert M. van Schothorst
Software Mentions: 1
Published: about 7 years ago
10.3390/nu9070714
Butyrate Reduces HFD-Induced Adipocyte Hypertrophy and Metabolic Risk Factors in Obese LDLr-/-.Leiden MiceCited by: 26
Author(s): Charlotte E. Pelgrim, Bart A. A. Franx, Jessica Snabel, Robert Kleemann, Ilse A.C. Arnoldussen, Amanda J. Kiliaan
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-021-88497-w
Saccharomyces boulardii modulates oxidative stress and renin angiotensin system attenuating diabetes-induced liver injury in miceCited by: 8
Author(s): Leticia Barssotti, Isabel Cristina Mallostro Emerich de Abreu, Ana Beatriz Pereira Brandão, Raquel Cristina Melo Ferreira de Albuquerque, Flávia Regina Ferreira, Miguel Angel Castillo Salgado, Danielle da Silva Dias, Kátia De Angelis, Rodrigo Yokota, Dulce Elena Casarini, Lívia Bruni de Souza, Carla Romano Taddei, Tatiana Sousa Cunha
Software Mentions: 1
Published: over 4 years ago
10.1089/aid.2018.0188
Increased Cervical CD4<sup>+</sup>CCR5<sup>+</sup> T Cells Among Kenyan Sex Working Women Using Depot Medroxyprogesterone AcetateCited by: 17
Author(s): Julie Lajoie, Annelie Tjernlund, Kenneth Omollo, Gabriella Edfeldt, Maria Röhl, Geneviève Boily-Larouche, Julianna Cheruiyot, Murungaru Kimani, Joshua Kimani, Julius Oyugi, Kristina Broliden, Keith R. Fowke
Software Mentions: 1
Published: over 6 years ago
10.1063/5.0035291
Injectable, macroporous scaffolds for delivery of therapeutic genes to the injured spinal cordCited by: 15
Author(s): Arshia Ehsanipour, Mayilone Sathialingam, Laila M. Rad, Joseph de Rutte, Rebecca D. Bierman, Jesse Liang, Weikun Xiao, Dino Di Carlo, Stephanie K. Seidlits
Software Mentions: 1
Published: over 4 years ago
10.1063/5.0054984
Engineering skeletal muscle tissues with advanced maturity improves synapse formation with human induced pluripotent stem cell-derived motor neuronsCited by: 11
Author(s): Jeffrey W Santoso, Xiling Li, Divya Gupta, Gio C. Suh, Eric Hendricks, Shao-Yu Lin, Sarah L. Perry, Justin K. Ichida, Dion Dickman, Megan L. McCain
Software Mentions: 1
Published: over 4 years ago
10.1007/s00401-017-1725-7
In-depth clinico-pathological examination of RNA foci in a large cohort of C9ORF72 expansion carriersCited by: 70
Author(s): Mariely DeJesus-Hernandez, Ni Cole A. Finch, Xue Wang, Tania F. Gendron, Kevin F. Bieniek, Michael G. Heckman, Aliaksei Vasilevich, Melissa E. Murray, Linda Rousseau, Rachael Weesner, Anthony Lucido, Meeia Parsons, Jeannie Chew, Keith A. Josephs, Joseph E. Parisi, David S. Knopman, Ronald C. Petersen, Bradley F. Boeve, Neill R. Graff‐Radford, Jan de Boer, Yan W. Asmann, Leonard Petrucelli, Kevin B. Boylan, Dennis W. Dickson, Marka van Blitterswijk, Rosa Rademakers
Software Mentions: 1
Published: over 8 years ago
10.1007/s00401-021-02319-x
Missense mutations in small muscle protein X-linked (SMPX) cause distal myopathy with protein inclusionsCited by: 6
Author(s): Mridul Johari, J. Sarparanta, Anna Vihola, Per Harald Jonson, Marco Savarese, Manu Jokela, Annalaura Torella, Giulio Piluso, Edith Said, Norbert Vella, Marija Cauchi, Armelle Magot, Francesca Magri, Eleonora Mauri, Cornelia Kornblum, Jens Reimann, Tanya Stojkovic, Norma B. Romero, H. Luque, Sanna Huovinen, Päivi Lahermo, Kati Donner, Giacomo Pietro Comi, Vincenzo Nigro, Peter Hackman, Bjarne Udd
Software Mentions: 1
Published: over 4 years ago
10.1186/s40478-017-0450-8
Zika virus tropism and interactions in myelinating neural cell cultures: CNS cells and myelin are preferentially affectedCited by: 54
Author(s): Stephanie L. Cumberworth, Jennifer A. Barrie, Madeleine E. Cunningham, Daniely Paulino Gomes de Figueiredo, Verena Schultz, Adrian Wilder-Smith, Benjamin Brennan, Lindomar Pena, Rafael Freitas de Oliveira França, Christopher Linington, Susan C. Barnett, Hugh J. Willison, Alain Kohl, Julia M. Edgar
Software Mentions: 1
Published: over 8 years ago
10.1186/s40478-019-0864-6
Polarizing receptor activation dissociates fibroblast growth factor 2 mediated inhibition of myelination from its neuroprotective potentialCited by: 13
Author(s): Katja Thümmler, Eran Rom, Thomas Zeis, Maren Lindner, Sarah Brunner, John Cole, Diana Arseni, Steve Mücklisch, Julia M. Edgar, Nicole Schaeren‐Wiemers, Avner Yayon, Christopher Linington
Software Mentions: 1
Published: almost 6 years ago
10.1186/s40478-020-0894-0
Early-onset impairment of the ubiquitin-proteasome system in dopaminergic neurons caused by α-synucleinCited by: 52
Author(s): Chris McKinnon, Mitchell L. de Snoo, Elise Gondard, Clemens Neudorfer, Hien Chau, Sophie G. Ngana, Darren M O'Hara, Jonathan M. Brotchie, James B. Koprich, Andrés M. Lozano, Lorraine V. Kalia, Suneil K. Kalia
Software Mentions: 1
Published: almost 6 years ago
10.1186/s40478-020-00976-9
Fyn kinase inhibition reduces protein aggregation, increases synapse density and improves memory in transgenic and traumatic TauopathyCited by: 28
Author(s): Si Jie Tang, Arman Fesharaki-Zadeh, Hideyuki Takahashi, Sarah Helena Nies, Levi M. Smith, Anin Luo, Annabel S. Chyung, Marius Chiasseu, Stephen M. Strittmatter
Software Mentions: 1
Published: over 5 years ago
10.1080/17453674.2020.1793613
Rotator cuff repair with biological graft augmentation causes adverse tissue outcomesCited by: 11
Author(s): Mustafa S. Rashid, Robert S. Smith, Navraj S. Nagra, Kim Wheway, Bridget Watkins, Sarah Snelling, Stephanie G. Dakin, Andrew Carr
Software Mentions: 1
Published: over 5 years ago
10.1080/21623945.2020.1787583
AdipoGauge software for analysis of biological microscopic imagesCited by: 22
Author(s): Mohammad Yosofvand, Sanka Liyanage, Nishan S. Kalupahana, Shane Scoggin, Naïma Moustaïd-Moussa, Hanna Moussa
Software Mentions: 1
Published: almost 6 years ago
10.1002/adma.201501351
Discovery of a Novel Polymer for Human Pluripotent Stem Cell Expansion and Multilineage DifferentiationCited by: 74
Author(s): Adam D. Celiz, James G W Smith, Asha K. Patel, Andrew L. Hook, Divya Rajamohan, Vinoj George, Luke Flatt, Minal Patel, V. Chandana Epa, Taranjit Singh, Robert Langer, Daniel G. Anderson, Nicholas Denby Allen, David C. Hay, David A. Winkler, David A. Barrett, Martyn C. Davies, Lorraine Young, Chris Denning, Morgan R. Alexander
Software Mentions: 1
Published: over 10 years ago
10.1002/advs.201902621
Routing Nanomolar Protein Cargoes to Lipid Raft‐Mediated/Caveolar Endocytosis through a Ganglioside GM1‐Specific Recognition TagCited by: 5
Author(s): Norbert Imre, Anasztázia Hetényi, Enikő Szabó, Brigitta Bodnár, Ábel Szkalisity, Ilona Gróf, Alexandra Bocsik, Mária A. Deli, Péter Horváth, Ágnes Czibula, Éva Monostori, Tamás A. Martinek
Software Mentions: 1
Published: almost 6 years ago
10.1002/advs.201901099
Engineered Cardiac Pacemaker Nodes Created by TBX18 Gene Transfer Overcome Source–Sink MismatchCited by: 14
Author(s): Sandra I. Grijalva, Jin-Mo Gu, Jun Li, Natasha Fernandez, Jinqi Fan, Jung Hoon Sung, Seung Yup Lee, Conner Herndon, Erin M. Buckley, Sung‐Jin Park, Flavio H. Fenton, Hee Cheol Cho
Software Mentions: 1
Published: about 6 years ago
10.18632/aging.101065
Inducing cellular senescence in vitro by using genetically encoded photosensitizersCited by: 8
Author(s): Nadezhda V. Petrova, Artem V. Luzhin, Ekaterina O. Serebrovskaya, Alina P. Ryumina, Artem K. Velichko, S. V. Razin, Omar L. Kantidze
Software Mentions: 1
Published: about 9 years ago
10.18632/aging.101066
Plasticity Related Gene 3 (PRG3) overcomes myelin-associated growth inhibition and promotes functional recovery after spinal cord injuryCited by: 15
Author(s): Thomas Broggini, Lisa Schnell, Ali Ghoochani, José Marı́a Mateos, Michael Buchfelder, Kurt Wiendieck, Michael K. E. Schäfer, Ilker Y. Eyüpoglu, Nicolai Ε. Savaskan
Software Mentions: 1
Published: about 9 years ago
10.18632/aging.102941
Peroxisomal abnormalities and catalase deficiency in Hutchinson-Gilford Progeria SyndromeCited by: 9
Author(s): Xiaojing Mao, Pratima Bharti, Abhirami Thaivalappil, Kan Cao
Software Mentions: 1
Published: over 5 years ago
10.1111/acel.13108
Heterochromatin loss as a determinant of progerin‐induced DNA damage in Hutchinson–Gilford ProgeriaCited by: 24
Author(s): Alexandre Chojnowski, P.P. Ong, Mattheus Xing Rong Foo, David Liebl, Louis‐Peter Hor, Colin L. Stewart, Oliver Dreesen
Software Mentions: 1
Published: over 5 years ago
10.1111/acel.13171
Autophagy regulates the localization and degradation of p16<sup>INK4a</sup>Cited by: 18
Author(s): Philip Coryell, Supreet K. Goraya, Katherine A. Griffin, Margaret A. Redick, Samuel R. Sisk, Jeremy E. Purvis
Software Mentions: 1
Published: over 5 years ago
10.1111/acel.12367
Age‐dependent decline in fin regenerative capacity in the short‐lived fish<i>Nothobranchius furzeri</i>Cited by: 61
Author(s): Sebastian Wendler, Nils Hartmann, Beate Hoppe, Christoph Englert
Software Mentions: 1
Published: over 10 years ago
10.1111/acel.12588
Residual Cdk1/2 activity after DNA damage promotes senescenceCited by: 38
Author(s): Erik Müllers, Helena Silva Cascales, Kamila Burdová, Libor Macůrek, Arne Lindqvist
Software Mentions: 1
Published: over 8 years ago
10.1186/s13195-019-0469-0
Alzheimer’s disease phospholipase C-gamma-2 (PLCG2) protective variant is a functional hypermorphCited by: 95
Author(s): Lorenza Magno, Christian Lessard, Marta Martins, Verena Lang, Pedro Cruz, Yasmine T. Asi, Matilda Katan, Jamie Bilsland, Tammaryn Lashley, Paramita Chakrabarty, Todd E. Golde, Paul J. Whiting
Software Mentions: 1
Published: almost 7 years ago
10.1016/j.ajhg.2018.02.010
Antisense Therapy for a Common Corneal Dystrophy Ameliorates TCF4 Repeat Expansion-Mediated ToxicityCited by: 53
Author(s): Christina Zarouchlioti, Beatriz Sanchez-Pintado, Nathaniel J. Hafford-Tear, Pontus Klein, Petra Lišková, Kalyan Dulla, Ma’ayan Semo, Anthony Vugler, Kirithika Muthusamy, Ľubica Ďuďáková, Hannah J. Levis, Pavlína Skalická, Pirro G. Hysi, Michael E. Cheetham, Stephen Tuft, Peter Adamson, Alison J. Hardcastle, Alice E. Davidson
Software Mentions: 1
Published: over 7 years ago
10.1155/2021/4793338
Pannexin1: Role as a Sensor to Injury Is Attenuated in Pretype 2 Corneal Diabetic EpitheliumCited by: 3
Author(s): Garrett Rhodes, Kristen L Segars, Yoonjoo K Lee, Audrey E. K. Hutcheon, Celeste B. Rich, Vickery Trinkaus‐Randall
Software Mentions: 1
Published: over 4 years ago
10.1007/s00277-020-04304-y
Macrophage frequency in the bone marrow correlates with morphologic subtype of myeloproliferative neoplasmCited by: 7
Author(s): D. Molitor, Peter Boor, Andreas Buneß, Rebekka K. Schneider, Lino L. Teichmann, R Körber, Gábor Horváth, Steffen Koschmieder, Ines Gütgemann
Software Mentions: 1
Published: about 5 years ago
10.1002/ana.25221
Stem cell modeling of mitochondrial parkinsonism reveals key functions of OPA1Cited by: 17
Author(s): Mindaugas Jonikas, Martin Madill, Alexandre Mathy, Theresa Zekoll, Christos E. Zois, Simon Wigfield, Marzena Kurzawa‐Akanbi, Cathy Browne, David Sims, Patrick F. Chinnery, Sally A. Cowley, George K. Tofaris
Software Mentions: 1
Published: over 7 years ago
10.1128/AAC.01192-16
Cefazolin and Ertapenem, a Synergistic Combination Used To Clear Persistent Staphylococcus aureus BacteremiaCited by: 33
Author(s): George Sakoulas, Joshua Olson, Juwon Yim, Niedita B. Singh, Monika Kumaraswamy, Diana Quach, Michael J. Rybak, Joseph Pogliano, Victor Nizet
Software Mentions: 1
Published: about 9 years ago