pypi: CellProfiler | Projects | Ecosyste.ms: Papers

10.1523/ENEURO.0370-20.2020

κ Opioid Receptor-Dynorphin Signaling in the Central Amygdala Regulates Conditioned Threat Discrimination and Anxiety
Cited by: 10
Author(s): Madison A. Baird, TingTing Y. Hsu, Rachel Wang, Barbara Juarez, Larry S. Zweifel
Software Mentions: 1
Published: almost 4 years ago

10.3389/fimmu.2019.02588

Spatial Distribution of Macrophages During Callus Formation and Maturation Reveals Close Crosstalk Between Macrophages and Newly Forming Vessels
Cited by: 26
Author(s): Jonathan Stefanowski, Annemarie Lang, Ariana Rauch, Linus Aulich, M Köhler, Alexander Fiedler, Frank Buttgereit, Katharina Schmidt‐Bleek, Georg N. Duda, Timo Gaber, Raluca Niesner, Anja E. Hauser
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2018.02633

Cell Death Is Counteracted by Mitophagy in HIV-Productively Infected Astrocytes but Is Promoted by Inflammasome Activation Among Non-productively Infected Cells
Cited by: 36
Author(s): Diego S. Ojeda, Daniel Grasso, Javier Urquiza, Andreas Till, María I. Vaccaro, Jorge Quarleri
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2020.00152

Fish Macrophages Show Distinct Metabolic Signatures Upon Polarization
Cited by: 36
Author(s): Annelieke S. Wentzel, Joëlle J. E. Janssen, Vincent C.J. de Boer, Wouter G. van Veen, Maria Forlenza, G.F. Wiegertjes
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2121-11-5

Pirin delocalization in melanoma progression identified by high content immuno-detection based approaches
Cited by: 21
Author(s): Silvia Licciulli, Chiara Luise, Andrea Zanardi, Luca Giorgetti, Giuseppe Viale, Luisa Lanfrancone, Roberta Carbone, Myriam Alcalay
Software Mentions: 1
Published: almost 15 years ago

10.3389/fimmu.2019.01340

Imaging Mass Cytometry and Single-Cell Genomics Reveal Differential Depletion and Repletion of B-Cell Populations Following Ofatumumab Treatment in Cynomolgus Monkeys
Cited by: 19
Author(s): Diethilde Theil, Paul A. Smith, Catherine Huck, Yoann Gilbart, Algirdas Kakarieka, David Leppert, Céline Rauld, Cindy Schmid, Reto Baumgartner, Nathalie Stuber, Francisco Córdoba, Valérie Dubost, Katy Darribat, Magali Jivkov, Wilfried Frieauff, Rainer Kneuer, Markus Stoeckli, Stefan Reinker, Keith Mansfield, José M. Carballido, Philippe Couttet, Gisbert Weckbecker
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.03068

Cytoskeletal Protein 4.1R Is a Positive Regulator of the FcεRI Signaling and Chemotaxis in Mast Cells
Cited by: 5
Author(s): Lubica Dráberová, Helena Draberova, Lucie Potůčková, Ivana Hálová, Monika Bambousková, Narla Mohandas, Petr Dráber
Software Mentions: 1
Published: almost 5 years ago

10.3389/fimmu.2021.666531

Inflammation Determines the Capacity of Allogenic Endothelial Cells to Regulate Human Treg Expansion
Cited by: 13
Author(s): Amy Cross, Julien Lion, Karine Poussin, Denis Glotz, Nuala Mooney
Software Mentions: 1
Published: over 3 years ago

10.3389/fimmu.2017.01229

Artificial Polysialic Acid Chains as Sialidase-Resistant Molecular-Anchors to Accumulate Particles on Neutrophil Extracellular Traps
Cited by: 16
Author(s): Christina E. Galuska, Jan A Dambon, Andrea Kühnle, Kim F Bornhöfft, Gerlinde Prem, Kristina Zlatina, Thomas Lütteke, Sebastian P. Galuska
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms22126553

In Vitro and In Vivo Efficacies of the Linear and the Cyclic Version of an All-d-Enantiomeric Peptide Developed for the Treatment of Alzheimer’s Disease
Cited by: 5
Author(s): Sarah Schemmert, Luana Cristina Camargo, Dominik Honold, Ian Gering, Janine Kutzsche, Antje Willuweit, Dieter Willbold
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2018.01675

Host Factor Nucleoporin 93 Is Involved in the Nuclear Export of Influenza Virus RNA
Cited by: 9
Author(s): Yuri Furusawa, S. Yamada, Yoshihiro Kawaoka
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-019-5694-1

An image-based assay to quantify changes in proliferation and viability upon drug treatment in 3D microenvironments
Cited by: 19
Author(s): Vasanth Siruvallur Murali, Bo-Jui Chang, Reto Fiolka, Gaudenz Danuser, Murat Can Çobanoğlu, Erik S. Welf
Software Mentions: 1
Published: over 5 years ago

10.3389/fmolb.2021.647590

Enhanced UnaG With Minimal Labeling Artifact for Single-Molecule Localization Microscopy
Cited by: 3
Author(s): Sangyoon Ko, Jiwoong Kwon, Sang Hee Shim
Software Mentions: 1
Published: over 3 years ago

10.3389/fnmol.2018.00051

Acute Down-regulation of BDNF Signaling Does Not Replicate Exacerbated Amyloid-β Levels and Cognitive Impairment Induced by Cholinergic Basal Forebrain Lesion
Cited by: 17
Author(s): Marion T. Turnbull, Zoran Boskovic, Elizabeth J. Coulson
Software Mentions: 1
Published: over 6 years ago

10.3389/fnmol.2018.00393

Investigating Gene Function for Neuronal Survival After Metabolic Stress Using Semi-Automated Fluorescence Microscopy and Automated Image Analysis
Cited by: 0
Author(s): Kristin Wendland, Andreas Meisel, Philipp Mergenthaler
Software Mentions: 1
Published: about 6 years ago

10.3389/fncir.2019.00004

Two eARCHT3.0 Lines for Optogenetic Silencing of Dopaminergic and Serotonergic Neurons
Cited by: 5
Author(s): Alexandra Krol, Violeta G. López-Huerta, Taylor E. C. Corey, Karl Deisseroth, Jonathan T. Ting, Guoping Feng
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22137098

New Concept and Apparatus for Cytocentrifugation and Cell Processing for Microscopy Analysis
Cited by: 1
Author(s): Anna Ligasová, Karel Koberna
Software Mentions: 1
Published: over 3 years ago

10.3389/fnana.2020.00042

Region and Cell Type Distribution of TCF4 in the Postnatal Mouse Brain
Cited by: 24
Author(s): Hyojin Kim, Noah Berens, Nicole Ochandarena, Benjamin D. Philpot
Software Mentions: 1
Published: over 4 years ago

10.3389/fneur.2017.00335

Changes in Ionic Conductance Signature of Nociceptive Neurons Underlying Fabry Disease Phenotype
Cited by: 23
Author(s): Barbara Namer, Kirstin Ørstavik, Roland Schmidt, Norbert Mair, Inge Petter Kleggetveit, Maximillian Zeidler, Theresa Martha, Ellen Jørum, Martin Schmelz, Theodora Kalpachidou, Michaela Kress, Michiel Langeslag
Software Mentions: 1
Published: over 7 years ago

10.3389/fnins.2017.00737

Parkinson's Disease Skin Fibroblasts Display Signature Alterations in Growth, Redox Homeostasis, Mitochondrial Function, and Autophagy
Cited by: 47
Author(s): Joji M. Y. Teves, Vedanshi Bhargava, Konner R. Kirwan, Mandi J. Corenblum, Rebecca Justiniano, Georg T. Wondrak, Annadurai Anandhan, Andrew J. Flores, David Schipper, Zain Khalpey, James E. Sligh, Clara Curiel‐Lewandrowski, Scott J. Sherman, Lalitha Madhavan
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms22168644

Ultrasensitive and Multiplexed Protein Imaging with Cleavable Fluorescent Tyramide and Antibody Stripping
Cited by: 2
Author(s): Thai H. Pham, Christopher D. Nazaroff, Joshua LaBaer, Jia Guo
Software Mentions: 1
Published: over 3 years ago

10.3389/fnins.2020.00274

Exogenous Orexin-A Microinjected Into Central Nucleus of the Amygdala Modulates Feeding and Gastric Motility in Rats
Cited by: 15
Author(s): Tingting Jin, Zucheng Jiang, Xiying Luan, Zhuling Qu, Feifei Guo, Shengli Gao, Xu Luo, Xiangrong Sun
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2019.01100

A High-Content Screening Approach to Identify MicroRNAs Against Head and Neck Cancer Cell Survival and EMT in an Inflammatory Microenvironment
Cited by: 9
Author(s): Bruno Sangiorgi, Felipe Canto de Souza, Ildercílio Mota de Souza Lima, Josiane Lilian dos Santos Schiavinato, Amanda Cristina Corveloni, Carolina Hassibe Thomé, Wilson A. Silva, Vítor Marcel Faça, Dimas Tadeu Covas, Marco Antônio Zago, Rodrigo Alexandre Panepucci
Software Mentions: 1
Published: about 5 years ago

10.1186/s12885-020-07420-0

Interferon-beta enhances sensitivity to gemcitabine in pancreatic cancer
Cited by: 10
Author(s): Amber Blaauboer, Stephanie Booy, Peter M. van Koetsveld, Bas Karels, Fadime Dogan, Suzanne van Zwienen, Casper H.J. van Eijck, Leo J. Hofland
Software Mentions: 1
Published: about 4 years ago

10.3389/fonc.2018.00446

miR-182 and miR-183 Promote Cell Proliferation and Invasion by Targeting FOXO1 in Mesothelioma
Cited by: 40
Author(s): Rui Suzuki, Vishwa Jeet Amatya, Kei Kushitani, Yuichiro Kai, Takahiro Kambara, Yukio Takeshima
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-020-07258-6

Mitochondrial apurinic/apyrimidinic endonuclease 1 enhances mtDNA repair contributing to cell proliferation and mitochondrial integrity in early stages of hepatocellular carcinoma
Cited by: 11
Author(s): Veronica Bazzani, Arianna Barchiesi, Dorota Radecka, Riccardo Pravisani, Antonio Guadagno, Carla Di Loreto, Umberto Baccarani, Carlo Vascotto
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms22168853

Cell Stress Induces Mislocalization of Transcription Factors with Mitochondrial Enrichment
Cited by: 3
Author(s): Chiara Rossi, Anna Fernàndez, Pascual Torres, Omar Ramírez‐Núñez, Ana Belén Granado-Serrano, Laia Fontdevila, Mònica Povedano, Reinald Pamplona, Isidró Ferrer, Manuel Portero‐Otín
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-015-1540-2

Monitoring therapeutic efficacy of sunitinib using [18F]FDG and [18F]FMISO PET in an immunocompetent model of luminal B (HER2-positive)-type mammary carcinoma
Cited by: 15
Author(s): Benoît Thézé, Nicholas Bernards, Audrey Beynel, Stéphan Bouet, Bertrand Kühnast, Irène Buvat, Bertrand Tavitian, Raphaël Boisgard
Software Mentions: 1
Published: over 9 years ago

10.1186/s12885-017-3084-0

HSP90 inhibition sensitizes head and neck cancer to platin-based chemoradiotherapy by modulation of the DNA damage response resulting in chromosomal fragmentation
Cited by: 26
Author(s): Martin McLaughlin, Holly E. Barker, Aadil Khan, Malin Pedersen, Magnus T. Dillon, David Mansfield, Radhika R. Patel, Joan Kyula, Shreerang A. Bhide, Kate Newbold, Christopher M. Nutting, Kevin Harrington
Software Mentions: 1
Published: almost 8 years ago

10.3389/fonc.2017.00161

Functional Assay of Cancer Cell Invasion Potential Based on Mechanotransduction of Focused Ultrasound
Cited by: 11
Author(s): Andrew C. Weitz, Nan Sook Lee, Chi Woo Yoon, Adrineh Bonyad, Kyo Suk Goo, Seaok Kim, San Moon, Hayong Jung, Qifa Zhou, Robert H. Chow, K. Kirk Shung
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-020-06770-z

Tumor endothelial ELTD1 as a predictive marker for treatment of renal cancer patients with sunitinib
Cited by: 6
Author(s): Marjut Niinivirta, Maria Georganaki, Gunilla Enblad, Cecilia Lindskog, Anna Dimberg, Gustav Ullenhag
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.00553

Metabolic Heterogeneity in Patient Tumor-Derived Organoids by Primary Site and Drug Treatment
Cited by: 69
Author(s): Joe T. Sharick, Christine M. Walsh, Carley M. Sprackling, Cheri A. Pasch, Dan Pham, Karla Esbona, Alka Choudhary, Rebeca Garcia-Valera, Mark E. Burkard, Stephanie M. McGregor, Kristina A. Matkowskyj, Alexander A. Parikh, Ingrid M. Meszoely, Mark C. Kelley, Susan Tsai, Dustin A. Deming, Melissa C. Skala
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2017.00127

Enhancing the Oncolytic Activity of CD133-Targeted Measles Virus: Receptor Extension or Chimerism with Vesicular Stomatitis Virus Are Most Effective
Cited by: 19
Author(s): Dina Kleinlützum, Julia Hanauer, Alexander Muik, Kay-Martin Hanschmann, Sarah-Katharina Kays, Camilo Ayala-Bretón, Kah-Whye Peng, Michael D. Mühlebach, Tobias Abel, Christian J. Buchholz
Software Mentions: 1
Published: over 7 years ago

10.1186/s12885-015-1045-z

Enhanced tumour cell nuclear targeting in a tumour progression model
Cited by: 5
Author(s): Michael S Nastasie, Helmut Thissen, David A. Jans, Kylie M. Wagstaff
Software Mentions: 1
Published: almost 10 years ago

10.3389/fphar.2019.00214

A Model of Glucocorticoid Receptor Interaction With Coregulators Predicts Transcriptional Regulation of Target Genes
Cited by: 11
Author(s): Federico Monczor, Antonia Chatzopoulou, Carlos Daniel Zappia, René Houtman, Onno C. Meijer, Carlos P. Fitzsimons
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2018.01104

Conventional Anti-glioblastoma Chemotherapy Affects Proteoglycan Composition of Brain Extracellular Matrix in Rat Experimental Model in vivo
Cited by: 17
Author(s): Alexandra Y. Tsidulko, Cynthia Bezier, Gabin de La Bourdonnaye, Anastasia V. Suhovskih, Т. М. Панкова, G. M. Kazanskaya, С. В. Айдагулова, Elvira V. Grigorieva
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2019.00619

Network Biology Identifies Novel Regulators of CFTR Trafficking and Membrane Stability
Cited by: 9
Author(s): Cláudia Loureiro, João Dourado Santos, Ana I. Matos, Peter Jordan, Paulo Matos, Carlos M. Farinha, Francisco Pinto
Software Mentions: 1
Published: over 5 years ago

10.3389/fphar.2021.604435

Enhanced Healthspan in Caenorhabditis elegans Treated With Extracts From the Traditional Chinese Medicine Plants Cuscuta chinensis Lam. and Eucommia ulmoides Oliv.
Cited by: 12
Author(s): Shimaa Mohamed Ali Sayed, Karsten Siems, Christian Schmitz‐Linneweber, Walter Luyten, Nadine Saul
Software Mentions: 1
Published: almost 4 years ago

10.3389/fphar.2021.679407

Dynamic Modeling of Mitochondrial Membrane Potential Upon Exposure to Mitochondrial Inhibitors
Cited by: 11
Author(s): Huan Yang, Wanda van der Stel, Randy Lee, Caroline Bauch, Sam Bevan, Paul Walker, Bob van de Water, Erik H.J. Danen, Joost B. Beltman
Software Mentions: 1
Published: over 3 years ago

10.3389/fphar.2019.01303

Applications of Deep-Learning in Exploiting Large-Scale and Heterogeneous Compound Data in Industrial Pharmaceutical Research
Cited by: 35
Author(s): Laurianne David, Josep Arús‐Pous, Johan Karlsson, Ola Engkvist, Esben Jannik Bjerrum, Thierry Kogej, Jan M. Kriegl, Bernd Beck, Hongming Chen
Software Mentions: 1
Published: about 5 years ago

10.3389/fphys.2018.00085

AdipoCount: A New Software for Automatic Adipocyte Counting
Cited by: 27
Author(s): Xu-Hao Zhi, Jiqiu Wang, Peng Lu, Junjing Jia, Hong Shen, Guang Ning
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphys.2019.01481

Multiscale Coupling of an Agent-Based Model of Tissue Fibrosis and a Logic-Based Model of Intracellular Signaling
Cited by: 24
Author(s): S. Michaela Rikard, Thomas L. Athey, Anders R. Nelson, Steven L. Christiansen, Jia-Jye Lee, Jeffrey W. Holmes, Shayn M. Peirce, Jeffrey J. Saucerman
Software Mentions: 1
Published: almost 5 years ago

10.3389/fphys.2016.00551

Limits of Applicability of the Voronoi Tessellation Determined by Centers of Cell Nuclei to Epithelium Morphology
Cited by: 47
Author(s): Sara Kaliman, Christina Jayachandran, Florian Rehfeldt, Ana‐Sunčana Smith
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2013.00439

Plant cell shape: modulators and measurements
Cited by: 68
Author(s): Alexander Ivakov, Staffan Persson
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijms22179387

Drebrin Regulates Acetylcholine Receptor Clustering and Organization of Microtubules at the Postsynaptic Machinery
Cited by: 2
Author(s): Paloma Álvarez-Suárez, Natalia Nowak, Anna Protasiuk-Filipunas, Hiroyuki Yamazaki, Tomasz J. Prószyński, Marta Gawor
Software Mentions: 1
Published: about 3 years ago

10.1186/s12915-017-0477-0

WorMachine: machine learning-based phenotypic analysis tool for worms
Cited by: 31
Author(s): Adam Hakim, Mor Y, Itai Antoine Toker, Amir Levine, Moran Neuhof, Yishai Markovitz, Oded Rechavi
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40478-020-00976-9

Fyn kinase inhibition reduces protein aggregation, increases synapse density and improves memory in transgenic and traumatic Tauopathy
Cited by: 28
Author(s): Si Jie Tang, Arman Fesharaki-Zadeh, Hideyuki Takahashi, Sarah Helena Nies, Levi M. Smith, Anin Luo, Annabel S. Chyung, Marius Chiasseu, Stephen M. Strittmatter
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.115.017830

CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns in<i>Saccharomyces cerevisiae</i>
Cited by: 66
Author(s): Judice L.Y. Koh, Yolanda T. Chong, Helena Friesen, Alan M. Moses, Charles Boone, Brenda Andrews, Jason Moffat
Software Mentions: 1
Published: over 9 years ago

10.1186/s12915-019-0736-3

Spatiotemporal mapping of RNA editing in the developing mouse brain using in situ sequencing reveals regional and cell-type-specific regulation
Cited by: 24
Author(s): E. Lundin, Chenglin Wu, Albin Widmark, Mikaela Behm, Jens Hjerling-Leffler, Chammiran Daniel, Marie Öhman, Mats Nilsson
Software Mentions: 1
Published: almost 5 years ago

10.1534/g3.120.401570

TheCellVision.org: A Database for Visualizing and Mining High-Content Cell Imaging Projects
Cited by: 2
Author(s): Myra Paz David Masinas, Mojca Mattiazzi Ušaj, Matej Ušaj, Charles Boone, Brenda Andrews
Software Mentions: 1
Published: about 4 years ago

10.1038/gt.2016.5

Oncolytic vaccinia virus as a vector for therapeutic sodium iodide symporter gene therapy in prostate cancer
Cited by: 44
Author(s): David Mansfield, Joan Kyula, N Rosenfelder, J Chao-Chu, Gabriela Kramer‐Marek, Aadil Khan, Victoria Roulstone, Martin McLaughlin, Alan Melcher, Richard G. Vile, Hardev Pandha, Vincent Khoo, Kevin Harrington
Software Mentions: 1
Published: almost 9 years ago

10.3390/genes11040347

Assessment of Genotoxicity in Human Cells Exposed to Modulated Electromagnetic Fields of Wireless Communication Devices
Cited by: 7
Author(s): David Schuermann, Christina Ziemann, Zeinab Barekati, Myles Capstick, A. Oertel, Frauke Focke, Manuel Murbach, Niels Kuster, Clemens Dasenbrock, Primo Schär
Software Mentions: 1
Published: over 4 years ago

10.3390/genes11050517

Evidence for Allele-Specific Levels of Enhanced Susceptibility of Wheat mlo Mutants to the Hemibiotrophic Fungal Pathogen Magnaporthe oryzae pv. Triticum
Cited by: 16
Author(s): Katrin Grüner, Tobias Esser, Johanna Acevedo‐Garcia, Matthias Freh, Michael Habig, Roxana Strugala, Eva H. Stukenbrock, Ulrich Schaffrath, Ralph Panstruga
Software Mentions: 1
Published: over 4 years ago

10.1186/s12915-017-0408-0

Thioester-containing proteins regulate the Toll pathway and play a role in Drosophila defence against microbial pathogens and parasitoid wasps
Cited by: 67
Author(s): Anna Dostálová, Samuel Rommelaere, Mickaël Poidevin, Bruno Lemaître
Software Mentions: 1
Published: about 7 years ago

10.1534/genetics.119.302053

Cross Talk with the GAR-3 Receptor Contributes to Feeding Defects in <i>Caenorhabditis elegans eat-2</i> Mutants
Cited by: 13
Author(s): Alena A. Kozlova, Michelle Lotfi, Peter G. Okkema
Software Mentions: 1
Published: over 5 years ago

10.1186/gb-2006-7-10-r100

Cited by: 4,179
Author(s): Anne E. Carpenter, Thouis R. Jones, Michael R. Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A. Guertin, Joo Han Chang, Robert A. Lindquist, Jason Moffat, Polina Golland, David M. Sabatini
Software Mentions: 1
Published: almost 19 years ago

10.1186/gb-2014-15-4-r64

Broad metabolic sensitivity profiling of a prototrophic yeast deletion collection
Cited by: 59
Author(s): Benjamin VanderSluis, David Hess, Colin Pesyna, Elias W. Krumholz, Tahin Syed, Balázs Szappanos, Corey Nislow, Balázs Papp, Olga G. Troyanskaya, Chad L. Myers, Amy A. Caudy
Software Mentions: 1
Published: almost 11 years ago

10.1523/ENEURO.0462-19.2019

A New Mouse Line Reporting the Translation of Brain-Derived Neurotrophic Factor Using Green Fluorescent Protein
Cited by: 9
Author(s): Erin Wosnitzka, Xinsheng Nan, Jeff Nan, Pedro Chacón-Fernández, Lothar Kußmaul, Michael Schuler, Bastian Hengerer, Yves‐Alain Barde
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms221910730

Molecular Mechanism of the Anti-Inflammatory Action of Heparin
Cited by: 17
Author(s): L. Litov, P. Petkov, Miroslav Rangelov, Nevena Ilieva, Elena Lilkova, Nadezhda Todorova, Elena Krachmarova, Kristina Malinova, Anastas Gospodinov, Rumyana Hristova, Iván Ivanov, Genoveva Nacheva
Software Mentions: 1
Published: about 3 years ago

10.1186/2041-9414-3-1

Development and validation of 'AutoRIF': software for the automated analysis of radiation-induced foci
Cited by: 12
Author(s): Andrew McVean, Simon Kent, A. V. Bakanov, Tom R. Hobbs, Rhona M. Anderson
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12915-016-0343-5

Surface attachment, promoted by the actomyosin system of Toxoplasma gondii is important for efficient gliding motility and invasion
Cited by: 78
Author(s): Jamie Whitelaw, María Fernanda Latorre Barragán, Simon Gras, Gurman S. Pall, Jacqueline M. Leung, Aoife T. Heaslip, Saskia Egarter, Nicole Andenmatten, Shane R. Nelson, David M. Warshaw, Gary E. Ward, Markus Meissner
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12915-018-0496-5

Combined flow cytometry and high-throughput image analysis for the study of essential genes in Caenorhabditis elegans
Cited by: 17
Author(s): Blanca Hernando‐Rodríguez, Annmary Paul Erinjeri, María Jesús Rodríguez‐Palero, Val Millar, Sara González-Hernández, María Olmedo, B. Schulze, Ralf Baumeister, Manuel J. Muñoz, Peter Askjaer, Marta Artal‐Sanz
Software Mentions: 1
Published: over 6 years ago

10.1186/s40478-020-0894-0

Early-onset impairment of the ubiquitin-proteasome system in dopaminergic neurons caused by α-synuclein
Cited by: 52
Author(s): Chris McKinnon, Mitchell L. de Snoo, Elise Gondard, Clemens Neudorfer, Hien Chau, Sophie G. Ngana, Darren M O'Hara, Jonathan M. Brotchie, James B. Koprich, Andrés M. Lozano, Lorraine V. Kalia, Suneil K. Kalia
Software Mentions: 1
Published: almost 5 years ago

10.1093/gigascience/giy078

KREAP: an automated Galaxy platform to quantify in vitro re-epithelialization kinetics
Cited by: 3
Author(s): Marcela M. Fernandez-Gutierrez, David B. H. van Zessen, Peter van Baarlen, Michiel Kleerebezem, Andrew Stubbs
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-020-3466-1

Automated image analysis system for studying cardiotoxicity in human pluripotent stem cell-Derived cardiomyocytes
Cited by: 3
Author(s): Lu Cao, Andries D. van der Meer, Fons J. Verbeek, Robert Passier
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-9-482

CellProfiler Analyst: data exploration and analysis software for complex image-based screens
Cited by: 480
Author(s): Thouis R. Jones, In Han Kang, Douglas B. Wheeler, Robert A. Lindquist, Adam Papallo, David M. Sabatini, Polina Golland, Anne E. Carpenter
Software Mentions: 1
Published: about 16 years ago

10.1186/s12859-020-3370-8

FocAn: automated 3D analysis of DNA repair foci in image stacks acquired by confocal fluorescence microscopy
Cited by: 13
Author(s): Simon Memmel, Dmitri Sisario, Heiko Zimmermann, Markus Sauer, Vladimir L. Sukhorukov, Cholpon S. Djuzenova, Michael Flentje
Software Mentions: 1
Published: almost 5 years ago

10.1002/glia.23562

Low sulfated heparins target multiple proteins for central nervous system repair
Cited by: 17
Author(s): George A. McCanney, Michael A. McGrath, Thomas D. Otto, Richard Burchmore, Edwin A. Yates, Charles D. Bavington, Hugh J. Willison, Jeremy E. Turnbull, Susan C. Barnett
Software Mentions: 1
Published: almost 6 years ago

10.1002/glia.23612

Transforming growth factor‐beta renders ageing microglia inhibitory to oligodendrocyte generation by CNS progenitors
Cited by: 31
Author(s): Roey Baror, Björn Neumann, Michael J. Segel, Kevin J. Chalut, Stephen P.J. Fancy, Dorothy P. Schafer, Robin J.M. Franklin
Software Mentions: 1
Published: over 5 years ago

10.1002/glia.22900

Characterization of glucose‐related metabolic pathways in differentiated rat oligodendrocyte lineage cells
Cited by: 68
Author(s): Ana Amaral Porem Amaral, Mussie Ghezu Hadera, Joana M. Tavares, Mark R. Kotter, Ursula Sonnewald
Software Mentions: 1
Published: about 9 years ago

10.1186/s12859-019-2602-2

Automated cell segmentation in FIJI® using the DRAQ5 nuclear dye
Cited by: 13
Author(s): Mischa Schwendy, Ronald E. Unger, Mischa Bonn, Sapun H. Parekh
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.heliyon.2018.e00920

Determination of the degree of grain refinement in irradiated U-Mo fuels
Cited by: 3
Author(s): Andrew M. Casella, Douglas E. Burkes, Paul J. MacFarlan, Edgar C. Buck
Software Mentions: 1
Published: almost 6 years ago

10.1007/s00418-018-1757-7

Histological processing of un-/cellularized thermosensitive electrospun scaffolds
Cited by: 10
Author(s): Julia Fuchs, Marc Mueller, Christine Daxböck, Manuela Stückler, Ingrid Lang, Gerd Leitinger, Elisabeth Bock, Amin El‐Heliebi, Gerit Moser, Birgit Glasmacher, Dagmar Brislinger
Software Mentions: 1
Published: almost 6 years ago

10.1111/imm.13343

Regulation of CTLA‐4 recycling by LRBA and Rab11
Cited by: 15
Author(s): Daniel Janman, Claudia Hinze, Alan Kennedy, Neil Halliday, Erin Waters, Cayman Williams, Behzad Rowshanravan, Tie Zheng Hou, Shane Minogue, Omar Qureshi, David M. Sansom
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-12-297

BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
Cited by: 11
Author(s): Christian Loyek, Nasir M. Rajpoot, Michael Khan, Tim Wilhelm Nattkemper
Software Mentions: 1
Published: over 13 years ago

10.1172/jci.insight.134290

MEK activation modulates glycolysis and supports suppressive myeloid cells in TNBC
Cited by: 20
Author(s): David S. Franklin, Joe T. Sharick, Paula I. Ericsson-Gonzalez, Violeta Sánchez, Phillip T. Dean, Susan R. Opalenik, Stefano Cairo, Jean Gabriel Judde, Michael T. Lewis, Jenny C. Chang, Melinda E. Sanders, Rebecca S. Cook, Melissa C. Skala, Jennifer Bordeaux, Jehovana Orozco Bender, Christine Vaupel, Gary Geiss, Douglas Hinerfeld, Justin M. Balko
Software Mentions: 1
Published: over 4 years ago

10.1172/jci.insight.138576

Loss of MAGEL2 in Prader-Willi syndrome leads to decreased secretory granule and neuropeptide production
Cited by: 37
Author(s): Helen Chen, A. Kaitlyn Victor, Jonathon Klein, Klementina Fon Tacer, Derek J.C. Tai, Celine de Esch, Alexander Nuttle, Jamshid Temirov, Lisa C. Burnett, Michael Rosenbaum, Yiying Zhang, Li Ding, James J. Moresco, Jolene K. Diedrich, John R. Yates, Heather Tillman, Rudolph L. Leibel, Michael E. Talkowski, Daniel D. Billadeau, Lawrence T. Reiter, Patrick Ryan Potts
Software Mentions: 1
Published: about 4 years ago

10.1186/s12859-014-0431-x

FogBank: a single cell segmentation across multiple cell lines and image modalities
Cited by: 56
Author(s): Joe Chalfoun, Michael Majurski, Alden A. Dima, Christina H. Stuelten, Adele P. Peskin, Mary Brady
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12951-017-0258-5

Optimizing conditions for labeling of mesenchymal stromal cells (MSCs) with gold nanoparticles: a prerequisite for in vivo tracking of MSCs
Cited by: 32
Author(s): Philipp Nold, Raimo Hartmann, Neus Feliu, Karsten Kantner, Mahmoud Gamal, Beatriz Pelaz, Jonas Hühn, Xing Sun, Philipp Jungebluth, Pablo del Pino, Holger Hackstein, Paolo Macchiarini, Wolfgang J. Parak, Cornelia Brendel
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-020-3431-z

A deep learning-based framework for lung cancer survival analysis with biomarker interpretation
Cited by: 22
Author(s): Lei Cui, Hansheng Li, Wenli Hui, Sitong Chen, Lin Yang, Yuxin Kang, Qirong Bo, Jun Feng
Software Mentions: 1
Published: over 4 years ago

10.1186/s40478-019-0864-6

Polarizing receptor activation dissociates fibroblast growth factor 2 mediated inhibition of myelination from its neuroprotective potential
Cited by: 13
Author(s): Katja Thümmler, Eran Rom, Thomas Zeis, Maren Lindner, Sarah Brunner, John Cole, Diana Arseni, Steve Mücklisch, Julia M. Edgar, Nicole Schaeren‐Wiemers, Avner Yayon, Christopher Linington
Software Mentions: 1
Published: almost 5 years ago

10.1172/jci.insight.148363

Characterization of HNRNPA1 mutations defines diversity in pathogenic mechanisms and clinical presentation
Cited by: 30
Author(s): Danique Beijer, Hong Joo Kim, Lin Guo, Kevin J. O’Donovan, Inès Mademan, Tine Deconinck, Kristof Van Schil, Charlotte M. Fare, Lauren E. Drake, Alice Flynn Ford, Andrzej Kochański, Dagmara Kabzińska, Nicolas Dubuisson, Peter Van den Bergh, Nicol C. Voermans, Richard J.L.F. Lemmers, Silvère M. van der Maarel, Devon Bonner, Jacinda B. Sampson, Matthew T. Wheeler, Anahit Mehrabyan, Steven C. Palmer, Peter De Jonghe, James Shorter, J. Paul Taylor, Jonathan Baets
Software Mentions: 1
Published: over 3 years ago

10.1200/CCI.19.00126

Deep-Learning–Based Characterization of Tumor-Infiltrating Lymphocytes in Breast Cancers From Histopathology Images and Multiomics Data
Cited by: 43
Author(s): Zixiao Lu, Siwen Xu, Wei Shao, Yi Wu, Jie Zhang, Zhi Han, Qianjin Feng, Kun Huang
Software Mentions: 1
Published: about 4 years ago

10.1016/j.jaci.2014.09.006

Prostaglandin D2 and leukotriene E4 synergize to stimulate diverse TH2 functions and TH2 cell/neutrophil crosstalk
Cited by: 46
Author(s): Luzheng Xue, Joannah R. Fergusson, Maryam Salimi, Isabel Panse, James E. Ussher, Ahmed N. Hegazy, Shân L. Vinall, David G. Jackson, Michael Hunter, Roy Pettipher, Graham S. Ogg, Paul Klenerman
Software Mentions: 1
Published: over 9 years ago

10.1186/s40104-020-00481-y

The interplay between non-esterified fatty acids and bovine peroxisome proliferator-activated receptors: results of an in vitro hybrid approach
Cited by: 15
Author(s): Sebastiano Busato, Massimo Bionaz
Software Mentions: 1
Published: over 4 years ago

10.1186/s11689-020-09332-3

A small-molecule screen reveals novel modulators of MeCP2 and X-chromosome inactivation maintenance
Cited by: 15
Author(s): Hyeong-Min Lee, M. Bram Kuijer, Nerea Ruiz Blanes, Ellen P. Clark, Megumi Aita, Lorena Galiano Arjona, Agnieszka Kokot, Noah Sciaky, Jeremy M. Simon, Sanchita Bhatnagar, Benjamin D. Philpot, Andrea Cerase
Software Mentions: 1
Published: about 4 years ago

10.1074/jbc.M117.792754

Role of the E3 ubiquitin ligase RNF157 as a novel downstream effector linking PI3K and MAPK signaling pathways to the cell cycle
Cited by: 15
Author(s): Taner Dogan, Florian Gnad, Jocelyn Chan, Lilian Phu, Amy Young, Jinan Chen, Sophia Doll, Matthew P. Stokes, Marcia Belvin, Lori S. Friedman, Donald S. Kirkpatrick, Klaus P. Hoeflich, Georgia Hatzivassiliou
Software Mentions: 1
Published: about 7 years ago

10.1074/jbc.RA118.002248

Human DHEA sulfation requires direct interaction between PAPS synthase 2 and DHEA sulfotransferase SULT2A1
Cited by: 26
Author(s): Jonathan Wolf Mueller, Jan Idkowiak, Tarsis F. Gesteira, Cecilia Vallet, Rebecca E. Hardman, Johannes van den Boom, Vivek Dhir, Shirley K. Knauer, Edina Rosta, Wiebke Arlt
Software Mentions: 1
Published: over 6 years ago

10.1186/s12974-019-1647-5

HSV-1 triggers paracrine fibroblast growth factor response from cortical brain cells via immediate-early protein ICP0
Cited by: 13
Author(s): Niko Hensel, Verena Raker, Benjamin Förthmann, Nora Tula Detering, Sabrina Kubinski, Anna Buch, Georgios Katzilieris-Petras, Julia Spanier, Viktoria Gudi, Sylvia Wagenknecht, Verena Kopfnagel, Thomas Werfel, Martin Stangel, Andreas Beineke, Ulrich Kalinke, Søren R. Paludan, Beate Sodeik, Peter Claus
Software Mentions: 1
Published: almost 5 years ago

10.1186/1471-2105-11-124

A fast and robust hepatocyte quantification algorithm including vein processing
Cited by: 5
Author(s): Tetyana Ivanovska, Andrea Schenk, André Homeyer, Meihong Deng, Uta Dahmen, Olaf Dirsch, Horst K. Hahn, Lars Linsen
Software Mentions: 1
Published: over 14 years ago

10.1523/ENEURO.0367-18.2018

Zic4-Lineage Cells Increase Their Contribution to Visual Thalamic Nuclei during Murine Embryogenesis If They Are Homozygous or Heterozygous for Loss of Pax6 Function
Cited by: 1
Author(s): Ziwen Li, Thomas Pratt, David J. Price
Software Mentions: 1
Published: about 6 years ago

10.1186/s12974-017-0813-x

Aprepitant limits in vivo neuroinflammatory responses in a rhesus model of Lyme neuroborreliosis
Cited by: 11
Author(s): Alejandra N. Martínez, Amanda R. Burmeister, Geeta Ramesh, Lara A. Doyle-Meyers, Ian Marriott, Mario T. Philipp
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.jbc.2021.101026

The DNA-binding protein CST associates with the cohesin complex and promotes chromosome cohesion
Cited by: 5
Author(s): P. Logan Schuck, Lauren E. Ball, Jason A. Stewart
Software Mentions: 1
Published: about 3 years ago

10.1186/s12859-018-2087-4

Assessing microscope image focus quality with deep learning
Cited by: 110
Author(s): Samuel J. Yang, Marc Berndl, D. Michael Ando, Mariya, Arunachalam Narayanaswamy, Eric Christiansen, Stephan Hoyer, Chris Roat, Jia‐Jang Hung, Curtis Rueden, Asim Shankar, Steven Finkbeiner, Philip C. Nelson
Software Mentions: 1
Published: over 6 years ago

10.1186/s12974-016-0666-8

High-fat diet feeding differentially affects the development of inflammation in the central nervous system
Cited by: 116
Author(s): Owein Guillemot-Legris, Julien Masquelier, Amandine Everard, Patrice D. Cani, Mireille Alhouayek, Giulio G. Muccioli
Software Mentions: 1
Published: about 8 years ago

10.1186/s13036-019-0222-z

Super-antibiofilm effect of N2 plasma treated buffer (NPB) against plant pathogenic bacterium
Cited by: 1
Author(s): Hyemi Seo, Jisoo Hong, Tae‐Yeol Kim, Won ll Choi, Daekyung Sung, Eunpyo Moon
Software Mentions: 1
Published: almost 5 years ago

10.1117/1.JBO.25.7.071203

Fluorescence lifetime imaging microscopy: fundamentals and advances in instrumentation, analysis, and applications
Cited by: 297
Author(s): Rupsa Datta, Tiffany M. Heaster, Joe T. Sharick, Amani A. Gillette, Melissa C. Skala
Software Mentions: 1
Published: over 4 years ago

10.1117/1.JBO.26.5.056502

Extracellular pH affects the fluorescence lifetimes of metabolic co-factors
Cited by: 9
Author(s): Rebecca Schmitz, Kelsey Tweed, Christine M. Walsh, Alex J. Walsh, Melissa C. Skala
Software Mentions: 1
Published: over 3 years ago

10.1177/1087057110370895

Screening Cellular Feature Measurements for Image-Based Assay Development
Cited by: 17
Author(s): David J. Logan, Anne E. Carpenter
Software Mentions: 1
Published: over 14 years ago

10.1186/s12974-019-1576-3

A small peptide antagonist of the Fas receptor inhibits neuroinflammation and prevents axon degeneration and retinal ganglion cell death in an inducible mouse model of glaucoma
Cited by: 75
Author(s): Anitha Krishnan, Andrew J. Kocab, David N. Zacks, Ann Marshak‐Rothstein, Meredith Gregory-Ksander
Software Mentions: 1
Published: about 5 years ago

Projects: pypi: CellProfiler

Papers Mentioning CellProfiler 1,504