Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: CREDO
https://packages.ecosyste.ms/registries/pypi.org/packages/CREDO
Package for benchmarking, profiling and analysis scientific modelling codes
1 version
Latest release: over 1 year ago
Papers Mentioning CREDO 31
10.1186/1471-2105-15-324
Polyphony: superposition independent methods for ensemble-based drug discoveryCited by: 8
Author(s): William R. Pitt, Rinaldo W. Montalvão, Tom L. Blundell
Software Mentions: 6
Published: about 10 years ago
10.1016/j.jmb.2016.12.004
Arpeggio: A Web Server for Calculating and Visualising Interatomic Interactions in Protein StructuresCited by: 307
Author(s): Harry Jubb, Alícia P. Higueruelo, Bernardo Ochoa‐Montaño, William R. Pitt, David B. Ascher, Tom L. Blundell
Software Mentions: 3
Published: almost 8 years ago
10.1038/s41598-019-41294-y
CREDO: Highly confident disease-relevant A-to-I RNA-editing discovery in breast cancerCited by: 3
Author(s): Woochang Hwang, Stefano Calza, M. Silvestri, Yudi Pawitan, Youngjo Lee
Software Mentions: 3
Published: over 5 years ago
10.1093/database/bat049
CREDO: a structural interactomics database for drug discoveryCited by: 31
Author(s): Adrian Schreyer, Tom L. Blundell
Software Mentions: 2
Published: almost 12 years ago
10.3389/fphar.2019.00561
In Silico Toxicology Data Resources to Support Read-Across and (Q)SARCited by: 53
Author(s): Gopal Pawar, Judith C. Madden, David J. Ebbrell, James W. Firman, Mark T.D. Cronin
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms21217906
Molecular Drivers of Platelet Activation: Unraveling Novel Targets for Anti-Thrombotic and Anti-Thrombo-Inflammatory TherapyCited by: 15
Author(s): Mainak Chatterjee, Agnes Ehrenberg, Laura Mara Toska, Lisa Maria Metz, Meike Klier, Irena Krüger, Friedrich Reusswig, Margitta Elvers
Software Mentions: 2
Published: about 4 years ago
10.3390/ijms22126184
Bioinformatics Accelerates the Major Tetrad: A Real Boost for the Pharmaceutical IndustryCited by: 11
Author(s): Tapan Behl, Ishnoor Kaur, Aayush Sehgal, Sukhbir Singh, Saurabh Bhatia, Ahmed Al‐Harrasi, Gökhan Zengin, Elena Emilia Babeş, Ciprian Brisc, Manuela Stoicescu, Mirela Mărioara Toma, Cristian Sava, Simona Bungău
Software Mentions: 2
Published: over 3 years ago
10.1186/1743-422X-7-359
Structural analysis of bacteriophage T4 DNA replication: a review in the Virology Journal series on bacteriophage T4 and its relativesCited by: 40
Author(s): Timothy C. Mueser, Jennifer M. Hinerman, Juliette M. Devos, Ryan A Boyer, Kandace J. Williams
Software Mentions: 2
Published: almost 14 years ago
10.1186/1471-2105-12-313
Comprehensive, atomic-level characterization of structurally characterized protein-protein interactions: the PICCOLO databaseCited by: 56
Author(s): G. Richard J. Bickerton, Alícia P. Higueruelo, Tom L. Blundell
Software Mentions: 2
Published: over 13 years ago
10.1093/database/bav026
CHOPIN: a web resource for the structural and functional proteome of Mycobacterium tuberculosisCited by: 23
Author(s): Bernardo Ochoa‐Montaño, Nishita Mohan, Tom L. Blundell
Software Mentions: 2
Published: almost 10 years ago
10.1093/database/bav060
SInCRe—structural interactome computational resource for<i>Mycobacterium tuberculosis</i>Cited by: 9
Author(s): Rahul Metri, Sridhar Hariharaputran, Gayatri Ramakrishnan, Praveen Anand, Upadhyayula S. Raghavender, Bernardo Ochoa‐Montaño, Alícia P. Higueruelo, Ramanathan Sowdhamini, Nagasuma Chandra, Tom L. Blundell, Narayanaswamy Srinivasan
Software Mentions: 2
Published: almost 10 years ago
10.1161/JAHA.112.004564
Impact of Proton Pump Inhibitor Therapy on the Efficacy of Clopidogrel in the CAPRIE and CREDO TrialsCited by: 44
Author(s): Steven P. Dunn, Steven R. Steinhubl, Déborah Bauer, Richard Charnigo, Peter B. Berger, Eric J. Topol
Software Mentions: 1
Published: almost 12 years ago
10.1186/1758-2946-4-27
USRCAT: real-time ultrafast shape recognition with pharmacophoric constraintsCited by: 68
Author(s): Adrian Schreyer, Tom L. Blundell
Software Mentions: 1
Published: about 12 years ago
10.1155/2016/6760710
Type 2 Diabetes and ADP Receptor Blocker TherapyCited by: 8
Author(s): Matej Samoš, Marián Fedor, František Kovář, Marián Mokáň, Tomáš Bolek, Péter Galajda, Peter Kubisz
Software Mentions: 1
Published: almost 9 years ago
10.3390/s21061963
Recognition of Cosmic Ray Images Obtained from CMOS Sensors Used in Mobile Phones by Approximation of Uncertain Class Assignment with Deep Convolutional Neural NetworkCited by: 8
Author(s): Tomasz Hachaj, Łukasz Bibrzycki, Marcin Piekarczyk
Software Mentions: 1
Published: over 3 years ago
10.3390/s21144804
CNN-Based Classifier as an Offline Trigger for the CREDO ExperimentCited by: 9
Author(s): Marcin Piekarczyk, Olaf Bar, Łukasz Bibrzycki, Michał Niedźwiecki, Krzysztof Rzecki, Sławomir Stuglik, T. C. Andersen, Н. Буднев, David Alvarez-Castillo, Kévin Almeida Cheminant, Dariusz Góra, Alok C. Gupta, B. Hnatyk, P. Homola, R. Kamiński, Marcin Kasztelan, Marek Knap, P. Kovács, Bartosz Łozowski, Justyna Miszczyk, Alona Mozgova, V. Nazari, Maciej Pawlik, Matías Rosas, Oleksandr Sushchov, Katarzyna Smelcerz, K. Smolek, J. Stasielak, T. Wibig, K. W. Woźniak, J. A. Zamora Saa
Software Mentions: 1
Published: over 3 years ago
10.1186/1477-9560-3-10
Resistance to aspirin is increased by ST-elevation myocardial infarction and correlates with adenosine diphosphate levelsCited by: 86
Author(s): Catharina Borna, Eduardo R. Lazarowski, Catharina van Heusden, Hans Öhlin, David Erlinge
Software Mentions: 1
Published: over 19 years ago
10.1155/2013/518968
Dual Antiplatelet Therapy Can Be Discontinued at Three Months after Implantation of Zotarolimus-Eluting Stent in Patients with Coronary Artery DiseaseCited by: 4
Author(s): Tadashi Wada, Makoto Nakahama, H. Toda, Atsuyuki Watanabe, Katsushi Hashimoto, Ritsuko Terasaka, Kazufumi Nakamura, Nobuyuki Yamada, Hiroshi Ito
Software Mentions: 1
Published: over 11 years ago
10.2196/jmir.2771
Rethinking the Dose-Response Relationship Between Usage and Outcome in an Online Intervention for Depression: Randomized Controlled TrialCited by: 148
Author(s): Liesje Donkin, Ian B. Hickie, Helen Christensen, Sharon L. Naismith, Bruce Neal, Nicole Cockayne, Nick Glozier
Software Mentions: 1
Published: about 11 years ago
10.1107/S0907444912000200
Handling ligands with <i>Coot</i>Cited by: 108
Author(s): J. Debreczeni, Paul Emsley
Software Mentions: 1
Published: over 12 years ago
10.2196/jmir.7864
Scaling Up Psychological Treatments: A Countrywide Test of the Online Training of TherapistsCited by: 33
Author(s): Christopher G. Fairburn, Elizabeth Allen, Suzanne Bailey‐Straebler, Marianne O'Connor, Zafra Cooper
Software Mentions: 1
Published: over 7 years ago
10.1155/2012/846163
Trends in Ambulatory Prescribing of Antiplatelet Therapy among US Ischemic Stroke Patients: 2000–2007Cited by: 6
Author(s): Sudeep Karve, Deborah A. Levine, Eric E. Seiber, Milap C. Nahata, Rajesh Balkrishnan
Software Mentions: 1
Published: almost 13 years ago
10.1186/1471-2105-15-12
GIANT: pattern analysis of molecular interactions in 3D structures of protein–small ligand complexesCited by: 13
Author(s): Kota Kasahara, Kengo Kinoshita
Software Mentions: 1
Published: almost 11 years ago
10.1186/1471-2148-8-280
Unique genes in plants: specificities and conserved features throughout evolutionCited by: 40
Author(s): David Armisén, Alain Lecharny, Santiago P. Aubourg
Software Mentions: 1
Published: about 16 years ago
10.1186/s12888-020-02604-1
Online cognitive behavioral therapy enhanced for binge eating disorder: study protocol for a randomized controlled trialCited by: 8
Author(s): Elske van den Berg, Bernou Melisse, Jitske Koenders, Margo de Jonge, Matthijs Blankers, Edwin de Beurs, Jack Dekker
Software Mentions: 1
Published: over 4 years ago
10.1186/s12893-015-0096-z
Should dual antiplatelet therapy be used in patients following coronary artery bypass surgery? A meta-analysis of randomized controlled trialsCited by: 65
Author(s): Subodh Verma, Shaun G. Goodman, Shamir R. Mehta, David A. Latter, Marc Ruel, Milan Gupta, Bobby Yanagawa, Mohammed Al‐Omran, Nandini Gupta, Hwee Teoh, Jan O. Friedrich
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0203343
The relationship between depression and cognitive function in adults with cardiovascular risk: Evidence from a randomised attention-controlled trialCited by: 11
Author(s): Haley M LaMonica, Daniel J. Biddle, Sharon L. Naismith, Ian B. Hickie, Paul Maruff
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0051742
What Can We Learn from the Evolution of Protein-Ligand Interactions to Aid the Design of New Therapeutics?Cited by: 20
Author(s): Alícia P. Higueruelo, Adrian Schreyer, G. Richard J. Bickerton, Tom L. Blundell, William R. Pitt
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0059139
Internet-Delivered Cognitive Behavioural Therapy for Adults with Mild to Moderate Depression and High Cardiovascular Disease Risks: A Randomised Attention-Controlled TrialCited by: 98
Author(s): Nick Glozier, Helen Christensen, Sharon L. Naismith, Nicole Cockayne, Liesje Donkin, Bruce Neal, Andrew Mackinnon, Ian B. Hickie
Software Mentions: 1
Published: over 11 years ago
10.3390/cells10092363
Lipid Polymorphism of the Subchloroplast—Granum and Stroma Thylakoid Membrane–Particles. II. Structure and FunctionsCited by: 4
Author(s): Ondřej Dlouhý, Václav Karlický, Rameez Arshad, Ottó Zsíros, Ildikó Domonkos, Irena Kurasová, András Wacha, Tomas Morosinotto, Attila Bóta, Roman Kouřil, Vladimı́r Špunda, Győző Garab
Software Mentions: 1
Published: about 3 years ago
10.2174/138920312799277901
How Random are Intrinsically Disordered Proteins? A Small Angle Scattering PerspectiveCited by: 288
Author(s): Véronique Receveur‐Brechot, Dominique Durand
Software Mentions: 1
Published: almost 13 years ago