Ecosyste.ms: Papers

10.3390/v12101145

Unmapped RNA Virus Diversity in Termites and Their Symbionts
Cited by: 23
Author(s): Callum Le Lay, Mǎng Shī, Aleš Buček, Thomas Bourguignon, Nathan Lo, Edward C. Holmes
Software Mentions: 6
Published: about 4 years ago

10.1186/s12864-019-5925-5

Transcriptional profiling of spiny lobster metamorphosis reveals three new additions to the nuclear receptor superfamily
Cited by: 8
Author(s): Cameron J. Hyde, Quinn P. Fitzgibbon, Abigail Elizur, Gregory G. Smith, Tomer Ventura
Software Mentions: 6
Published: over 5 years ago

10.1111/pbi.13210

The draft genome of a wild barley genotype reveals its enrichment in genes related to biotic and abiotic stresses compared to cultivated barley
Cited by: 39
Author(s): Miao Liu, Yan Li, Yanling Ma, Qiang Zhao, Jiri Stiller, Qi Feng, Qifeng Tian, Dengcai Liu, Bin Han, Chunji Liu
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.665153

Comparative Analysis of the Circular Transcriptome in Muscle, Liver, and Testis in Three Livestock Species
Cited by: 9
Author(s): Annie Robic, Chloé Cerutti, Christa Kühn, Thomas Faraut
Software Mentions: 6
Published: over 3 years ago

10.1111/1755-0998.12465

Optimization of next-generation sequencing transcriptome annotation for species lacking sequenced genomes
Cited by: 24
Author(s): Nina F. Ockendon, Lauren A. O’Connell, Stephen J. Bush, Jimena Monzón‐Sandoval, Holly Barnes, Tamás Székely, Hans A. Hofmann, Steve Dorus, Araxi O. Urrutia
Software Mentions: 5
Published: about 9 years ago

10.1186/s12864-015-2108-x

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos
Cited by: 18
Author(s): Delasa Aghamirzaie, Dhruv Batra, Lenwood S. Heath, Andrew M. Schneider, Ruth Grene, Eva Collakova
Software Mentions: 4
Published: about 9 years ago

10.1111/pbi.12995

Genome sequence of <i>Jatropha curcas</i> L., a non‐edible biodiesel plant, provides a resource to improve seed‐related traits
Cited by: 52
Author(s): Jung Min Ha, Sangrea Shim, Taeyoung Lee, Yang Jae Kang, Wooncheol Hwang, Haneul Jeong, Kularb Laosatit, Jayern Lee, Sue K. Kim, Dani Satyawan, Puji Lestari, Min Young Yoon, Moon Y. Kim, Annapurna Chitikineni, Patcharin Tanya, Prakit Somta, Peerasak Srinives, Rajeev K. Varshney, Suk-Ha Lee
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-017-00896-0

Arsenic metabolism in high altitude modern stromatolites revealed by metagenomic analysis
Cited by: 55
Author(s): Daniel Kurth, Ariel Fernando Amadío, Omar Federico Ordoñez, Virginia Helena Albarracín, Wolfgang Gärtner, Marı́a Eugenia Farı́as
Software Mentions: 4
Published: over 7 years ago

10.3389/fphar.2019.00109

A Comparative Study of Cluster Detection Algorithms in Protein–Protein Interaction for Drug Target Discovery and Drug Repurposing
Cited by: 23
Author(s): Ma Jun, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Benjamin Haibe‐Kains, Peng Dai
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-42485-3

Comparison of multi-tissue aging between human and mouse
Cited by: 13
Author(s): Jujuan Zhuang, Lijun Zhang, Shuang Dai, Lingyu Cui, Cheng Guo, Laura Sloofman, Jialiang Yang
Software Mentions: 4
Published: over 5 years ago

10.1002/cbic.202000509

Biochemical and Structural Characterization of an Unusual and Naturally Split Class 3 Intein
Cited by: 3
Author(s): Simon Hoffmann, Tobias M. E. Terhorst, Rohit Singh, Daniel Kümmel, Shmuel Pietrokovski, Henning D. Mootz
Software Mentions: 4
Published: about 4 years ago

10.3390/microorganisms9061121

Long-Term Effects of Dietary Supplementation with Olive Oil and Hydrogenated Vegetable Oil on the Rumen Microbiome of Dairy Cows
Cited by: 7
Author(s): Nathaly Cancino‐Padilla, Natalia Catalán, Karen Siu-Ting, Christopher J. Creevey, Sharon Huws, Jaime Romero, Einar Vargas‐Bello‐Pérez
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.7184

Soil physicochemical properties drive the variation in soil microbial communities along a forest successional series in a degraded wetland in northeastern China
Cited by: 27
Author(s): Xin Sui, Rongtao Zhang, Beat Frey, Libin Yang, Yingnan Liu, Hongwei Ni, Mai‐He Li
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2021.723350

Identification and Molecular Characterization of a Novel Hordeivirus Associated With Yellow Mosaic Disease of Privet (Ligustrum vulgare) in Europe
Cited by: 4
Author(s): Jean-Sébastien Reynard, Silvia Turco, Justine Brodard, Isabelle Kellenberger, François Maclot, Olivier Schumpp, P. Gugerli, Mikhail M. Pooggin
Software Mentions: 4
Published: about 3 years ago

10.1007/s00415-014-7343-6

Cervical dystonia and pain: characteristics and treatment patterns from CD PROBE (Cervical Dystonia Patient Registry for Observation of OnabotulinumtoxinA Efficacy)
Cited by: 59
Author(s): P. David Charles, Charles H. Adler, Mark Stacy, Cynthia L. Comella, Joseph Jankovic, Aubrey Manack Adams, Marc Schwartz, Mitchell F. Brin
Software Mentions: 4
Published: over 10 years ago

10.1002/ece3.5965

Draft genome of the famous ornamental plant <i>Paeonia suffruticosa</i>
Cited by: 31
Author(s): Shuzuo Lv, Shu Cheng, Zhanying Wang, Shiming Li, Xin Jin, Lei Lan, Bing Yang, Kun Yu, Xiliang Ni, Ning Li, Xiaogai Hou, Gang Huang, Jie Wang, Yang Dong, Erqiang Wang, Jun Huang, Gengyun Zhang, Zhang Can-jun
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1000274

Mutations in AtPS1 (Arabidopsis thaliana Parallel Spindle 1) Lead to the Production of Diploid Pollen Grains
Cited by: 125
Author(s): Isabelle d’Erfurth, Sylvie Jolivet, Nicole Froger, Olivier Catrice, Maria Novatchkova, Simon Mathieu, Eric Jenczewski, Raphaël Mercier
Software Mentions: 3
Published: almost 16 years ago

10.1002/ece3.6377

Comparison of spleen transcriptomes of two wild rodent species reveals differences in the immune response against <i>Borrelia afzelii</i>
Cited by: 4
Author(s): Xianqiong Zhong, Max Lundberg, Lars Råberg
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2019.02434

CD Maps—Dynamic Profiling of CD1–CD100 Surface Expression on Human Leukocyte and Lymphocyte Subsets
Cited by: 34
Author(s): Tomáš Kalina, Karel Fišer, Martín Pérez‐Andrés, Daniela Kužílková, Marta Cuenca, Sophinus J. W. Bartol, E Blanco, Pablo Engel, Menno C. van Zelm
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-08313-2

Recurrent horizontal transfer of arsenite methyltransferase genes facilitated adaptation of life to arsenic
Cited by: 57
Author(s): Songcan Chen, Guoxin Sun, Barry P. Rosen, Siyu Zhang, Ye Deng, Bokai Zhu, Christopher Rensing, Yan Zhu
Software Mentions: 3
Published: over 7 years ago

10.1155/2013/185282

Elucidation of Novel Structural Scaffold in Rohu TLR2 and Its Binding Site Analysis with Peptidoglycan, Lipoteichoic Acid and Zymosan Ligands, and Downstream MyD88 Adaptor Protein
Cited by: 20
Author(s): Bikash R. Sahoo, Madhubanti Basu, Bichitrananda Swain, Manas Ranjan Dikhit, P. Jayasankar, Mrinal Samanta
Software Mentions: 3
Published: almost 12 years ago

10.1111/pbi.12936

Chromosome-level assembly, genetic and physical mapping of<i>Phalaenopsis aphrodite</i>genome provides new insights into species adaptation and resources for orchid breeding
Cited by: 66
Author(s): Ya-Ting Chao, Wan Chieh Chen, Chun Yi Chen, Hsiu Yin Ho, Chih Hsin Yeh, Yi Tzu Kuo, Chun Li Su, Shao Hua Yen, Hao Yen Hsueh, Jen Hau Yeh, Hui Lan Hsu, Yi Hui Tsai, Tzu Yen Kuo, Song Bin Chang, Kai-Yi Chen, Ming Che Shih
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.5633

The draft genome of <i>Actinia tenebrosa</i> reveals insights into toxin evolution
Cited by: 25
Author(s): Joachim M. Surm, Zachary K. Stewart, Alexie Papanicolaou, Ana Pavasovic, Peter J. Prentis
Software Mentions: 3
Published: about 5 years ago

10.3390/genes12050634

Genome-Wide Identification and Expansion Patterns of SULTR Gene Family in Gramineae Crops and Their Expression Profiles under Abiotic Stress in Oryza sativa
Cited by: 5
Author(s): Zhengqing Yuan, Weixiong Long, Haifei Hu, Ting Liang, Xiaoyun Luo, Zhongli Hu, Rong Zhu, Xianting Wu
Software Mentions: 3
Published: over 3 years ago

10.15252/msb.20199208

Impact of C‐terminal amino acid composition on protein expression in bacteria
Cited by: 17
Author(s): Marc Weber, Raul Burgos, Eva Yus, Jun Yang, María Lluch‐Senar, Luís Serrano
Software Mentions: 3
Published: over 4 years ago

10.1080/21501203.2017.1419995

The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes
Cited by: 11
Author(s): Wladimir Mardones, Alex Di Génova, María Paz Cortés, Dante Travisany, Alejandro Maass, Jaime Eyzaguirre
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0056604

Genomic Insights into the Glutathione S-Transferase Gene Family of Two Rice Planthoppers, Nilaparvata lugens (Stål) and Sogatella furcifera (Horváth) (Hemiptera: Delphacidae)
Cited by: 60
Author(s): Wenwu Zhou, Qiao Liang, Yi Xu, Geoff M. Gurr, Yan-Yuan Bao, Xueping Zhou, Chuan‐Xi Zhang, Cheng Jiaan, Zhiliang Zhu
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41421-020-0150-6

Crystal structures of REF6 and its complex with DNA reveal diverse recognition mechanisms
Cited by: 14
Author(s): Zizi Tian, Xiaorong Li, Min Li, Wei Wu, Manfeng Zhang, C. C. H. Tang, Zhihui Li, Yunlong Liu, Zhongzhou Chen, Meng Yang, Lulu Ma, Cody Caba, Yufeng Tong, Hon‐Ming Lam, Shaodong Dai
Software Mentions: 2
Published: over 4 years ago

10.6061/clinics/2017(01)04

Late preterm infants' motor development until term age
Cited by: 6
Author(s): Viviane Martins Santos, Cibelle Kayenne Martins Roberto Formiga, Paulo Roberto Bezerra de Mello, Cléa Rodrigues Leone
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12859-016-1059-9

Reduction, alignment and visualisation of large diverse sequence families
Cited by: 4
Author(s): William R. Taylor
Software Mentions: 2
Published: over 8 years ago

10.1016/j.wroa.2020.100061

Predicting breakthrough of vanadium in fixed-bed absorbent columns with complex groundwater chemistries: A multi-component granular ferric hydroxide−vanadate−arsenate−phosphate−silicic acid system
Cited by: 8
Author(s): A. A. Dabizha, Carsten Bahr, Michael Kersten
Software Mentions: 2
Published: almost 4 years ago

10.3390/s18082567

DIFTOS: A Distributed Infrastructure-Free Traffic Optimization System Based on Vehicular Ad Hoc Networks for Urban Environments
Cited by: 17
Author(s): Guoqing Zhang, Nyothiri Aung, Sahraoui Dhelim, Yibo Ai
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.5571

The Bellerophon pipeline, improving de novo transcriptomes and removing chimeras
Cited by: 13
Author(s): Jesse Kerkvliet, Arthur de Fouchier, Michiel P. van Wijk, Astrid T. Groot
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.03338-20

Cooperation between Different CRISPR-Cas Types Enables Adaptation in an RNA-Targeting System
Cited by: 24
Author(s): Ville Hoikkala, Janne J. Ravantti, Cesar Díez‐Villaseñor, Marja Tiirola, Rachel A. Conrad, Mark J. McBride, Sylvain Moineau, Lotta‐Riina Sundberg
Software Mentions: 2
Published: over 3 years ago

10.1016/j.jmb.2018.10.011

Investigating the Effect of Chain Connectivity on the Folding of a Beta-Sheet Protein On and Off the Ribosome
Cited by: 20
Author(s): Andrew P. Marsden, Jeffrey J. Hollins, C.H. O'Neill, Pavel Ryzhov, Sally Higson, Carolina Mendonca, Tristan O. C. Kwan, Lee Gyan Kwa, Annette Steward, Jane Clarke
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22073529

Genome-wide Identification and Characterization of FCS-Like Zinc Finger (FLZ) Family Genes in Maize (Zea mays) and Functional Analysis of ZmFLZ25 in Plant Abscisic Acid Response
Cited by: 13
Author(s): Shunquan Chen, Xibao Li, Chao Yang, Yan Wang, Chuanliang Liu, Xiaoyan Tang, Caiji Gao
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.6865

Identification of scavenger receptors and thrombospondin‐type‐1 repeat proteins potentially relevant for plastid recognition in Sacoglossa
Cited by: 12
Author(s): Jenny Melo Clavijo, Silja Frankenbach, Cátia Fidalgo, João Serôdio, Alexander Donath, Angelika Preisfeld, Gregor Christa
Software Mentions: 2
Published: about 4 years ago

10.1111/eva.13000

Temporal changes in gene expression and genotype frequency of the ornithine decarboxylase gene in native silverside <i>Basilichthys microlepidotus</i>: Impact of wastewater reduction due to implementation of public policies
Cited by: 3
Author(s): David Véliz, Noemí Rojas‐Hernández, Sylvia V. Copaja, Caren Vega‐Retter
Software Mentions: 2
Published: over 4 years ago

10.1111/pbi.13493

A high‐quality <i>Brassica napus</i> genome reveals expansion of transposable elements, subgenome evolution and disease resistance
Cited by: 42
Author(s): Xuequn Chen, Chaobo Tong, Xingtan Zhang, Aixia Song, Ming Hu, Wei Dong, Fei Chen, Youping Wang, Jinxing Tu, Liu S, Haibao Tang, Liangsheng Zhang
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2020.01467

Marine Oomycetes of the Genus Halophytophthora Harbor Viruses Related to Bunyaviruses
Cited by: 19
Author(s): Leticia Botella, Jan Janoušek, Cristiana Maia, Marília Horta Jung, Milica Raco, Thomas S. Jung
Software Mentions: 2
Published: over 4 years ago

10.1111/pbi.13026

Integrated transcriptome, small <scp>RNA</scp> and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea
Cited by: 60
Author(s): Vanika Garg, Aamir W. Khan, Himabindu Kudapa, Sandip M. Kale, Annapurna Chitikineni, Sun Qi-zhong, Mamta Sharma, Li Chuanying, Baohong Zhang, Xin Liu, P. B. Kavi Kishor, Rajeev K. Varshney
Software Mentions: 2
Published: almost 6 years ago

10.1007/s00299-020-02520-4

Wheat PP2C-a10 regulates seed germination and drought tolerance in transgenic Arabidopsis
Cited by: 31
Author(s): Xiao‐Lan Yu, Jiapeng Han, Li Li, Qian Zhang, Guangxiao Yang, Guoqing He
Software Mentions: 2
Published: almost 5 years ago

10.1002/pld3.65

Transcriptome assembly and annotation of johnsongrass (<i>Sorghum halepense</i> ) rhizomes identify candidate rhizome-specific genes
Cited by: 8
Author(s): Nathan Ryder, Kevin M. Dorn, Mark Huitsing, Micah Adams, Jeff Ploegstra, Lee DeHaan, Steve Larson, Nathan L. Tintle
Software Mentions: 2
Published: over 6 years ago

10.3390/metabo10090378

Comparison of Three Untargeted Data Processing Workflows for Evaluating LC-HRMS Metabolomics Data
Cited by: 18
Author(s): Selina Hemmer, Sascha K. Manier, Svenja Fischmann, Folker Westphal, Lea Wagmann, Markus R. Meyer
Software Mentions: 2
Published: about 4 years ago

10.3389/fphar.2021.654714

Integrated Strategy of Network Pharmacological Prediction and Experimental Validation Elucidate Possible Mechanism of Bu-Yang Herbs in Treating Postmenopausal Osteoporosis via ESR1
Cited by: 14
Author(s): Hanting Xia, Jiangyuan Liu, Wenlong Yang, Min Liu, Yunfeng Luo, Zhijun Yang, Jingbo Xie, Huiliang Zeng, Rui Xu, Houfu Ling, Qinghe Zeng, Huihui Xu, Fang Liang, Hongyu Wang, Peijian Tong, Hongting Jin, Fusheng Yang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-015-1343-5

Characterization and expression profiling of glutathione S-transferases in the diamondback moth, Plutella xylostella (L.)
Cited by: 67
Author(s): Yunxiang You, Ming Xie, Na Ren, Xue-Min Cheng, Jianyu Li, Ma Xiang, Mingming Zou, Liette Vasseur, Geoff M. Gurr, Minsheng You
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.00066

Bioinformatics Prediction and Evolution Analysis of Arabinogalactan Proteins in the Plant Kingdom
Cited by: 57
Author(s): Yussanne Ma, Chenchao Yan, Huimin Li, Weihang Wu, Yaxue Liu, Yuqian Wang, Qin Chen, Hongwei Ma
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2021.709534

Genome-Wide Identification and Comparison of Cysteine Proteases in the Pollen Coat and Other Tissues in Maize
Cited by: 2
Author(s): Yanhua Li, Liangjie Niu, Xiaolin Wu, Claudia Faleri, Fuju Tai, Man Zhang, Hui Liu, Wei Wang, Giampiero Cai
Software Mentions: 2
Published: about 3 years ago

10.3390/metabo10050190

JUMPm: A Tool for Large-Scale Identification of Metabolites in Untargeted Metabolomics
Cited by: 6
Author(s): Xusheng Wang, Ji-Hoon Cho, P. Suresh, Yuxin Li, Drew R. Jones, Timothy I. Shaw, Haidong Tan, Boer Xie, Junmin Peng
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2021.667929

Genome-Wide Identification and Evolutionary Analysis of Gossypium Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress
Cited by: 13
Author(s): Nasreen Bano, Shafquat Fakhrah, Chandra Sekhar Mohanty, Sumit K. Bag
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2021.703994

Comprehensive Analysis of the SBP Family in Blueberry and Their Regulatory Mechanism Controlling Chlorophyll Accumulation
Cited by: 4
Author(s): Xin Xie, Shaokang Yue, Baosheng Shi, Hongxue Li, Yuhai Cui, Jingying Wang, Penghui Yang, Shuchun Li, Xuyan Li, Shaomin Bian
Software Mentions: 2
Published: over 3 years ago

10.3389/fpls.2021.634594

Gene Expression Patterns for Proteins With Lectin Domains in Flax Stem Tissues Are Related to Deposition of Distinct Cell Wall Types
Cited by: 8
Author(s): Н. В. Петрова, Alsu Nazipova, Oleg Gorshkov, Natalia Mokshina, Olga A. Patova, Т. А. Горшкова
Software Mentions: 2
Published: over 3 years ago

10.1111/1751-7915.13305

Comparative proteomic analysis of four biotechnological strains<i>Lactococcus lactis</i>through label-free quantitative proteomics
Cited by: 10
Author(s): Wanderson M. Silva, Cassiana Severiano de Sousa, Lívia Costa de Oliveira, Siomar C. Soares, Gustavo H. M. F. Souza, Guilherme Campos Tavares, Cristiana Perdigão Resende, Edson Luiz Folador, Felipe L. Pereira, Henrique César Pereira Figueiredo, Vasco Azevedo
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pcbi.1008834

A unified framework for inferring the multi-scale organization of chromatin domains from Hi-C
Cited by: 7
Author(s): Ji Hyun Bak, Min Hyeok Kim, Lei Liu, Changbong Hyeon
Software Mentions: 2
Published: over 3 years ago

10.1242/bio.026393

Cloning, molecular evolution and functional characterization of ZmbHLH16, the maize ortholog of OsTIP2 (OsbHLH142)
Cited by: 6
Author(s): Yongming Liu, Jia Li, Weihua Gui, Yonghao Sun, Yanli Lu, Hai Long, Chuan Li, Suzhi Zhang, Mengji Cao
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12864-021-07705-z

The dissection of R genes and locus Pc5.1 in Phytophthora capsici infection provides a novel view of disease resistance in peppers
Cited by: 13
Author(s): Jin-Song Du, Hang Liao, Qian Hao, Haitao Yang, S. Ali, Radwa Salah Ezaat Badawy, Xiaoyu Xu, Haidong Tan, Lihong Su, Huanxiu Li, Zou KaiXi, Li Yu, Bo Sun, Lijin Lin, Yunsong Lai
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0226232

Investigation of the quorum-sensing regulon of the biocontrol bacterium Pseudomonas chlororaphis strain PA23
Cited by: 11
Author(s): Nidhi Shah, April S. Gislason, Michael G. Becker, Mark F. Belmonte, W. G. Dilantha Fernando, Teresa R. de Kievit
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0170676

Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics
Cited by: 18
Author(s): Rafael Azevedo Baraúna, Rommel Thiago Jucá Ramos, Adonney Allan de Oliveira Veras, Kenny C. Pinheiro, Leandro de Jesus Benevides, Marcus Vinícius Canário Viana, Luís Carlos Guimarães, Judy M. Edman, Sharon J. Spier, Vasco Azevedo, Artur M. S. Silva
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0129650

Computational Prediction of acyl-coA Binding Proteins Structure in Brassica napus
Cited by: 15
Author(s): Nadia Raboanatahiry, Guangyuan Lu, Maoteng Li
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-017-3769-4

Comparative genomic analysis of innate immunity reveals novel and conserved components in crustacean food crop species
Cited by: 36
Author(s): Alvina G. Lai, A. Aziz Aboobaker
Software Mentions: 2
Published: over 7 years ago

10.1155/2021/8885954

Serum Metabolites as an Indicator of Developing Gestational Diabetes Mellitus Later in the Pregnancy: A Prospective Cohort of a Chinese Population
Cited by: 13
Author(s): Mengyuan Tian, Shujuan Ma, Yu You, Sisi Long, Jiayue Zhang, Chuhao Guo, Xiaolei Wang, Hongzhuan Tan
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.ppat.1008539

Inhibition of the NAD salvage pathway in schistosomes impairs metabolism, reproduction, and parasite survival
Cited by: 7
Author(s): Michael D. Schultz, Tulin Dadali, Sylvain Jacques, Hélène Muller-Steffner, Jeremy B. Foote, Leonardo Sorci, Esther Kellenberger, Davide Botta, Frances E. Lund
Software Mentions: 2
Published: over 4 years ago

10.15252/msb.20209880

Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes
Cited by: 22
Author(s): Georgy Smyshlyaev, Alex Bateman, O. Barábas
Software Mentions: 2
Published: over 3 years ago

10.1186/s40249-020-00713-3

Bioinformatics analysis of epitope-based vaccine design against the novel SARS-CoV-2
Cited by: 48
Author(s): Hongzhi Chen, Lingli Tang, Xia Yu, Jie Zhou, Yunfeng Chang, Xiang Wu
Software Mentions: 1
Published: over 4 years ago

10.1111/1744-7917.12711

Identification and temporal expression profiles of cuticular proteins in the endoparasitoid wasp, <i>Microplitis mediator</i>
Cited by: 11
Author(s): Olga Volovych, Liu Zhe, Jie Du, Hong Jiang, Zhen Zou
Software Mentions: 1
Published: over 5 years ago

10.1186/s13036-019-0186-z

A silkworm based silk gland bioreactor for high-efficiency production of recombinant human lactoferrin with antibacterial and anti-inflammatory activities
Cited by: 12
Author(s): Sheng Xu, Feng Wang, Yuancheng Wang, Riyuan Wang, Kai Hou, Chao Tian, Yanting Ji, Qianqian Yang, Ping Zhao, Qingyou Xia
Software Mentions: 1
Published: over 5 years ago

10.1111/jcpp.12581

Mapping the structural organization of the brain in conduct disorder: replication of findings in two independent samples
Cited by: 12
Author(s): Graeme Fairchild, Nicola Toschi, Kate Sully, Edmund Sonuga‐Barke, Cindy C. Hagan, Stefano Diciotti, Ian Goodyer, Andrew J. Calder, Luca Passamonti
Software Mentions: 1
Published: over 8 years ago

10.1002/prot.25779

Prediction of interresidue contacts with DeepMetaPSICOV in CASP13
Cited by: 98
Author(s): Shaun M. Kandathil, Joe G Greener, David T. Jones
Software Mentions: 1
Published: over 5 years ago

10.1098/rsos.190412

Chitinase genes from <i>Metarhizium anisopliae</i> for the control of whitefly in cotton
Cited by: 14
Author(s): Waheed Anwar, Muhammad Asim Javed, Ahmad Ali Shahid, Kiran Nawaz, Adnan Akhter, Muhammad Zia ur Rehman, Usman Hameed, Sehrish Iftikhar, Muhammad Saleem Haider
Software Mentions: 1
Published: over 5 years ago

10.1038/srep10031

Effects and Mechanism of Atmospheric-Pressure Dielectric Barrier Discharge Cold Plasmaon Lactate Dehydrogenase (LDH) Enzyme
Cited by: 115
Author(s): Hao Zhang, Zimu Xu, Jie Shen, Li Xu, Lili Ding, Jie Ma, Yan Liu, Weidong Xia, Cheng Cheng, Qibin Sun, Zelong Zhang, Paul K. Chu
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-02513-6

Characterization of the Adult Head Transcriptome and Identification of Migration and Olfaction Genes in the Oriental Armyworm Mythimna separate
Cited by: 5
Author(s): Hai-Xu Bian, Hui Ma, Xiangqun Zheng, Minghui Peng, Yuping Li, Junfang Su, Huan Wang, LI Qun, Run-Xi Xia, Yan-Qun Liu, Xingfu Jiang
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-27031-x

Comparative Evaluation of MS-based Metabolomics Software and Its Application to Preclinical Alzheimer’s Disease
Cited by: 41
Author(s): Ling Hao, Jingxin Wang, David L. Page, Sanjay Asthana, Henrik Zetterberg, Cynthia M. Carlsson, Ozioma C. Okonkwo, Lingjun Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-019-47140-5

Tyrosine 51 residue of the syndecan-2 extracellular domain is involved in the interaction with and activation of pro-matrix metalloproteinase-7
Cited by: 5
Author(s): Bohee Jang, Ji-Hye Yun, Sojoong Choi, Jimin Park, Dongkun Shin, Seung Taek Lee, Weontae Lee, Eok Soo Oh
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-82567-9

Understanding and recognition of the right ventricular function and dysfunction via a numerical study
Cited by: 6
Author(s): Giulia Comunale, Paolo Peruzzo, Biagio Castaldi, Renato Razzolini, Giovanni Di Salvo, Massimo A. Padalino, Francesca Maria Susin
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-86269-0

Comparative transcriptome and metabolome analysis of Ostrinia furnacalis female adults under UV-A exposure
Cited by: 7
Author(s): Li Su, Chang-Li Yang, Jian‐Yu Meng, Lv Zhou, Changyu Zhang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-86337-5

Genome-wide identification and expression pattern analysis of the ribonuclease T2 family in Eucommia ulmoides
Cited by: 2
Author(s): Qing Jun, Qingxin Du, Yide Meng, Panfeng Liu, Hongyan Du, Lu Wang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-99346-1

Novel gene similar to nitrite reductase (NO forming) plays potentially important role in the latency of tuberculosis
Cited by: 0
Author(s): Sonia Agrawal, Suwarna P. Gample, Amar Yeware, Dhiman Sarkar
Software Mentions: 1
Published: about 3 years ago

10.3390/toxins11110619

A Data-Independent Methodology for the Structural Characterization of Microcystins and Anabaenopeptins Leading to the Identification of Four New Congeners
Cited by: 19
Author(s): Audrey Roy-Lachapelle, Morgan Solliec, Sébastien Sauvé, Christian Gagnon
Software Mentions: 1
Published: about 5 years ago

10.3390/toxins11120702

Immunogenic Properties of Recombinant Enzymes from Bothrops ammodytoides towards the Generation of Neutralizing Antibodies against Its Own Venom
Cited by: 6
Author(s): Herlinda Clement, Ligia Luz Corrales-García, Damaris I. Bolaños, Gerardo Corzo, Elba Villegas
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijms19123969

Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.)
Cited by: 44
Author(s): Xuejiao Cheng, Xiaodan Liu, Weiwei Mao, Xurui Zhang, Shulin Chen, Kai Zhan, Huihui Bi, Haixia Xu
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms221910264

Genome-Wide Identification and Characterization of the Cystatin Gene Family in Bread Wheat (Triticum aestivum L.)
Cited by: 4
Author(s): Long He, Xuan Chen, Menghui Xu, Tingting Liu, Tianye Zhang, Juan Li, Jian Yang, Jianping Chen, Kaili Zhong
Software Mentions: 1
Published: about 3 years ago

10.1186/s12967-020-02222-1

Establishment of the circadian metabolic phenotype strategy in spontaneously hypertensive rats: a dynamic metabolomics study
Cited by: 14
Author(s): Huanjun Wang, Xiaoming Wang, Dongmei Qi, Mengjia Sun, Qingqing Hou, Yunlun Li, Haiqiang Jiang
Software Mentions: 1
Published: almost 5 years ago

10.1107/S1399004715016892

The structure of the GemC1 coiled coil and its interaction with the Geminin family of coiled-coil proteins
Cited by: 20
Author(s): Christophe Caillat, Alexander Fish, Dafni-Eleftheria Pefani, Stavros Taraviras, Zoi Lygerou, Anastassis Perrakis
Software Mentions: 1
Published: about 9 years ago

10.3390/nu13051401

Mobile Application for Promoting Gluten-Free Diet Self-Management in Adolescents with Celiac Disease: Proof-of-Concept Study
Cited by: 4
Author(s): Sonya Meyer, Gali Naveh
Software Mentions: 1
Published: over 3 years ago

10.1002/advs.202001044

Functional Ultrasound Speckle Decorrelation‐Based Velocimetry of the Brain
Cited by: 13
Author(s): Jianbo Tang, Dmitry D. Postnov, Kıvılcım Kılıç, Şefik Evren Erdener, Blaire Lee, John Giblin, Thomas L. Szabo, David A. Boas
Software Mentions: 1
Published: over 4 years ago

10.1002/advs.201500369

Identification of a Novel Parallel β‐Strand Conformation within Molecular Monolayer of Amyloid Peptide
Cited by: 28
Author(s): Lei Liu, Qiang Li, Shuai Zhang, Xiaofeng Wang, Søren Vrønning Hoffmann, Jingyuan Li, Zheng Liu, Flemming Besenbacher, Mingdong Dong
Software Mentions: 1
Published: over 8 years ago

10.3390/ani11020560

LC-MS/MS Based Metabolomics Reveal Candidate Biomarkers and Metabolic Changes in Different Buffalo Species
Cited by: 16
Author(s): Wen Shi, Xiang Yuan, Kuiqing Cui, Hui Li, Penghui Fu, Saif ur Rehman, Deshun Shi, Qingyou Liu, Zhipeng Li
Software Mentions: 1
Published: almost 4 years ago

10.1002/aps3.1036

Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics
Cited by: 49
Author(s): Mohammad Vatanparast, Adrian F. Powell, Jeff J. Doyle, Ashley N. Egan
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-7-503

Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
Cited by: 48
Author(s): Petras J. Kundrotas, Emil Alexov
Software Mentions: 1
Published: about 18 years ago

10.1186/1471-2148-10-144

Generation of microsatellite repeat families by RTE retrotransposons in lepidopteran genomes
Cited by: 63
Author(s): Wee Tek Tay, G. T. Behere, Philip Batterham, David G. Heckel
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-13-595

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote
Cited by: 115
Author(s): Shikai Liu, Yu Zhang, Zunchun Zhou, Geoff Waldbieser, Fenyong Sun, Jianguo Lü, Jiaren Zhang, Yanliang Jiang, Hao Zhang, Xiuli Wang, K. V. Rajendran, Lester H. Khoo, Huseyin Kucuktas, Eric Peatman, Zhanjiang Liu
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-019-5990-9

Correction to: Transcriptional profiling of spiny lobster metamorphosis reveals three new additions to the nuclear receptor superfamily
Cited by: 0
Author(s): Cameron J. Hyde, Quinn P. Fitzgibbon, Abigail Elizur, Gregory G. Smith, Tomer Ventura
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-15-585

Transcriptome analysis of the differences in gene expression between testis and ovary in green mud crab (Scylla paramamosain)
Cited by: 89
Author(s): Jie Gao, Xiaowei Wang, Zhihua Zou, Xiaoyun Jia, Yilei Wang, Ziping Zhang
Software Mentions: 1
Published: over 10 years ago

10.1186/s12870-021-02933-7

Genome-wide identification, characterization and expression analysis of BES1 gene family in tomato
Cited by: 23
Author(s): Deding Su, Xu Wei, Liangzhi Wen, Lu Wang, Yuan Shi, Yudong Liu, Zhengguo Li
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-017-1052-0

Molecular cloning, structure, phylogeny and expression analysis of the invertase gene family in sugarcane
Cited by: 39
Author(s): Liming Wang, Zheng Yong, Shihui Ding, Qing Zhang, Youqiang Chen, Jisen Zhang
Software Mentions: 1
Published: over 7 years ago

10.1186/s13104-019-4488-5

Complete genome sequence of the Sulfodiicoccus acidiphilus strain HS-1T, the first crenarchaeon that lacks polB3, isolated from an acidic hot spring in Ohwaku-dani, Hakone, Japan
Cited by: 8
Author(s): Hiroyuki D. Sakai, Norio Kurosawa
Software Mentions: 1
Published: over 5 years ago

10.1007/s12575-009-9009-9

A Method for Structure–Activity Analysis of Quorum-Sensing Signaling Peptides from Naturally Transformable Streptococci
Cited by: 19
Author(s): Xiaolin Tian, Raymond T. Syvitski, TianLei Liu, Nadine Livingstone, David L. Jakeman, Yung-Hua Li
Software Mentions: 1
Published: over 15 years ago

10.1155/2021/9050026

Structural and Functional Elucidation of IF-3 Protein of Chloroflexus aurantiacus Involved in Protein Biosynthesis: An In Silico Approach
Cited by: 6
Author(s): Abu Saim Mohammad Saikat, Ekhlas Uddin, Tasnim Ahmad, Shahriar Mahmud, Abu Sayeed Imran, Sohel Ahmed, Salem A. Alyami, Mohammad Ali Moni
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-2867-9-9

Pegylated derivatives of recombinant human arginase (rhArg1) for sustained in vivo activity in cancer therapy: preparation, characterization and analysis of their pharmacodynamics in vivo and in vitro and action upon hepatocellular carcinoma cell (HCC)
Cited by: 61
Author(s): S. M. Tsui, Wai-man Lam, Alan Tin‐Lun Lam, Hiu-Chi Chong, Pui‐Kin So, Sui-Yi Kwok, Simon Arnold, Paul Cheng, Denys N. Wheatley, Wai‐Hung Lo, Yun Chung Leung
Software Mentions: 1
Published: over 15 years ago

10.1155/2020/6020247

Metabolic Profiling by UPLC–Orbitrap–MS/MS of Liver from C57BL/6 Mice with DSS-Induced Inflammatory Bowel Disease
Cited by: 6
Author(s): Zhongquan Xin, Zhe Zhai, Hongrong Long, Fan Zhang, Xiaojun Ni, Jinping Deng, Lunzhao Yi, Baichuan Deng
Software Mentions: 1
Published: about 4 years ago