Projects: pypi: CCMetagen
https://packages.ecosyste.ms/registries/pypi.org/packages/CCMetagen
Microbiome classification pipeline
8 versions
Latest release: almost 5 years ago
73 downloads last month
Enhanced Analysis
Educational Contributors:
jan.buchmann@sydney.edu.au
jan@fenner.bio.usyd.edu.au
Repository Activity:
Repository Owner:
VR Marcelino (user)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+40
Educational commit emails
2 contributors with educational email addresses -
+18
Science terms in README
9 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning CCMetagen 8
10.1038/s41598-021-91425-7
Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiomeCited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2020.572534
Coral-Associated Viral Assemblages From the Central Red Sea Align With Host Species and Contribute to Holobiont Genetic DiversityCited by: 12
Author(s): Anny Cárdenas, Jin Ye, Maren Ziegler, Jérôme P. Payet, Ryan McMinds, Rebecca Vega Thurber, Christian R. Voolstra
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12859-021-04212-6
Expanding the taxonomic range in the fecal metagenomeCited by: 1
Author(s): Theo R. Allnutt, Alexandra J. Roth‐Schulze, Leonard C. Harrison
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0231047
Metagenomic analysis of Aedes aegypti and Culex quinquefasciatus mosquitoes from Grenada, West IndiesCited by: 16
Author(s): Maria E. Ramos‐Nino, Daniel M. Fitzpatrick, Korin Eckstrom, Scott Tighe, Lindsey M. Hattaway, Andy N. Hsueh, Diana M. Stone, Julie A. Dragon, Sonia Cheetham
Software Mentions: 2
Published: over 6 years ago
10.1186/s13059-020-02014-2
CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic dataCited by: 74
Author(s): Vanessa R. Marcelino, Philip Thomas Lanken Conradsen Clausen, Jan P. Buchmann, Michelle Wille, Jonathan R. Iredell, Wieland Meyer, Ole Lund, Tania C. Sorrell, Edward C. Holmes
Software Mentions: 2
Published: over 6 years ago
10.3390/v12101180
Metatranscriptomic Identification of Diverse and Divergent RNA Viruses in Green and Chlorarachniophyte Algae CulturesCited by: 24
Author(s): Justine Charon, Vanessa R. Marcelino, Richard Wetherbee, Heroen Verbruggen, Edward C. Holmes
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12864-020-6592-2
The use of taxon-specific reference databases compromises metagenomic classificationCited by: 25
Author(s): Vanessa R. Marcelino, Edward C. Holmes, Tania C. Sorrell
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2021.685935
Key Technologies for Progressing Discovery of Microbiome-Based MedicinesCited by: 9
Author(s): Remy Young, Vanessa R. Marcelino, Michelle Chonwerawong, Emily L. Gulliver, Samuel C. Forster
Software Mentions: 1
Published: about 5 years ago